Query 029091
Match_columns 199
No_of_seqs 113 out of 655
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 4.1E-66 8.9E-71 491.3 11.6 180 14-199 45-224 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1.3E-60 2.7E-65 461.2 13.0 176 17-199 1-176 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 7.8E-46 1.7E-50 356.4 10.9 165 23-199 1-167 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 1.9E-34 4.1E-39 275.6 10.8 145 39-199 1-147 (624)
5 TIGR00733 putative oligopeptid 98.6 2.2E-07 4.7E-12 90.1 8.9 127 40-196 2-132 (591)
6 COG1297 Predicted membrane pro 97.4 0.00029 6.4E-09 68.4 6.4 133 35-196 10-146 (624)
7 TIGR02106 cyd_oper_ybgT cyd op 66.2 8 0.00017 23.7 2.7 18 44-61 5-22 (30)
8 PF08173 YbgT_YccB: Membrane b 64.2 9.3 0.0002 23.1 2.7 18 44-61 5-22 (28)
9 PRK14749 hypothetical protein; 62.5 10 0.00023 23.2 2.7 18 44-61 5-22 (30)
10 PF11166 DUF2951: Protein of u 41.5 27 0.00058 26.9 2.6 17 42-58 72-88 (98)
11 COG4890 Predicted outer membra 40.0 37 0.00081 21.6 2.7 19 44-62 5-23 (37)
12 PHA02975 hypothetical protein; 34.4 45 0.00098 24.2 2.7 42 23-65 25-66 (69)
13 PHA02650 hypothetical protein; 28.7 61 0.0013 24.2 2.7 43 23-65 25-71 (81)
14 PF13314 DUF4083: Domain of un 24.3 72 0.0016 22.4 2.2 29 154-182 5-33 (58)
15 TIGR00845 caca sodium/calcium 23.4 1.3E+02 0.0028 31.7 4.8 108 39-177 728-844 (928)
16 PF12575 DUF3753: Protein of u 23.3 99 0.0021 22.6 2.9 43 22-65 24-70 (72)
17 PF11167 DUF2953: Protein of u 23.2 79 0.0017 20.7 2.3 28 44-71 12-42 (53)
18 PHA02819 hypothetical protein; 23.1 97 0.0021 22.6 2.8 42 23-65 25-68 (71)
19 PF10710 DUF2512: Protein of u 22.9 92 0.002 25.1 3.0 38 55-94 19-56 (136)
20 PHA03054 IMV membrane protein; 21.2 1.1E+02 0.0025 22.3 2.9 43 23-65 25-70 (72)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-66 Score=491.35 Aligned_cols=180 Identities=62% Similarity=1.116 Sum_probs=174.9
Q ss_pred CCCCCCChHHHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCC
Q 029091 14 IDGDELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPE 93 (199)
Q Consensus 14 ~~~~~~sPy~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~ 93 (199)
.+++|||||||||++||++|||++|++|||||+||+++|+++|++||||++|+|+++|+.+++|+++||+||+|||+||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCceeecCCCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHh
Q 029091 94 TRFRIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWA 173 (199)
Q Consensus 94 ~~~~~~~~~g~~~~LNPGpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~lfy~~~~~~g~~il~~lstQllG~G~A 173 (199)
|++++. ++|+++|||||||.|||++|||+||++ +|.+|++.+|.+||+||+++.++++++|++++||++|||+|
T Consensus 125 ~~~~~~--~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwA 198 (761)
T KOG2262|consen 125 WKFGLG--GRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWA 198 (761)
T ss_pred eeeecC--cceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHh
Confidence 999863 488999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred hhccceeeecCCcccCchhhhcccCC
Q 029091 174 GLLRKYVVEPAHMWWPSTLVQVSLFR 199 (199)
Q Consensus 174 Gl~R~~lV~P~~miwP~~L~~~aLf~ 199 (199)
||+||+||||++|+||++|++|+||+
T Consensus 199 Gl~Rk~lV~Pa~m~WPsnLvqvsLFr 224 (761)
T KOG2262|consen 199 GLFRKYLVYPASMWWPSNLVQVSLFR 224 (761)
T ss_pred hhhHhhccCcHhhcCcchhHHHHHHH
Confidence 99999999999999999999999985
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.3e-60 Score=461.21 Aligned_cols=176 Identities=35% Similarity=0.677 Sum_probs=171.6
Q ss_pred CCCChHHHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCcee
Q 029091 17 DELSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRF 96 (199)
Q Consensus 17 ~~~sPy~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~~~ 96 (199)
||||||||||++|+++|||++|++|||+|++|++++++++++||+|++|+|+++++++++||++||+||+|||+||+|++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeecCCCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhhhc
Q 029091 97 RIPGCGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQVLGYGWAGLL 176 (199)
Q Consensus 97 ~~~~~~g~~~~LNPGpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~lfy~~~~~~g~~il~~lstQllG~G~AGl~ 176 (199)
+++ |++++|||||||+|||++|+||||++ ++.+|+++++.+|++|||++.+++++|++++|+|++|||+||++
T Consensus 81 ~~~---g~~~~lNPGPF~~KEh~liti~a~~~----~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~l 153 (681)
T TIGR00727 81 TIR---GRKYNIIPGPFNVKEHMFITLMYAVS----FGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGIL 153 (681)
T ss_pred ccc---cceeccCCCCCChhcceeeeeeeehh----ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 886 78899999999999999999999999 78899999999999999999999999999999999999999999
Q ss_pred cceeeecCCcccCchhhhcccCC
Q 029091 177 RKYVVEPAHMWWPSTLVQVSLFR 199 (199)
Q Consensus 177 R~~lV~P~~miwP~~L~~~aLf~ 199 (199)
||++|||++|+||++|++++|++
T Consensus 154 Rr~lV~p~~~iwPs~L~t~aL~~ 176 (681)
T TIGR00727 154 RRFVVYPARALWPTNLVTITINK 176 (681)
T ss_pred hceEeccccCcCCCccHHHHHHH
Confidence 99999999999999999999975
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=7.8e-46 Score=356.37 Aligned_cols=165 Identities=45% Similarity=0.756 Sum_probs=159.1
Q ss_pred HHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCceeecCCCC
Q 029091 23 EEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCG 102 (199)
Q Consensus 23 ~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~~~~~~~~~ 102 (199)
||||+ ++++|||++|++|||+|++|++++++++++||+|++|++.++++++++|+++||+||+|+|+||+|+
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~------- 72 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE------- 72 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc-------
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCceeecCCCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHHHhccCchHHHHHHHHHHHHH--HHHHHhhhcccee
Q 029091 103 SRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYHRKISFLASWLLIITTQV--LGYGWAGLLRKYV 180 (199)
Q Consensus 103 g~~~~LNPGpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~lfy~~~~~~g~~il~~lstQl--lG~G~AGl~R~~l 180 (199)
|++++|||||||+|||+++++|||++ ++.+++++++.+|++||+++.++++++++++++|+ +|+|+||++||++
T Consensus 73 ~~~~~lnpgpft~kE~~~iq~~asa~----~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~l 148 (654)
T TIGR00728 73 GWKFSLNPGPFNVKENNLIQTAASAC----GGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRAL 148 (654)
T ss_pred ccceecCCCCCChhhheeEEeeeecc----ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhhe
Confidence 35678999999999999999999999 77889999999999999999999999999999999 9999999999999
Q ss_pred eecCCcccCchhhhcccCC
Q 029091 181 VEPAHMWWPSTLVQVSLFR 199 (199)
Q Consensus 181 V~P~~miwP~~L~~~aLf~ 199 (199)
|+|++|+||+.+++++|++
T Consensus 149 V~~~~l~~P~~la~a~l~~ 167 (654)
T TIGR00728 149 VVPAKLPWPSGLATAELFK 167 (654)
T ss_pred eCcccccCCcccHHHHHHH
Confidence 9999999999999998864
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.9e-34 Score=275.62 Aligned_cols=145 Identities=37% Similarity=0.600 Sum_probs=138.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCceeecCCCCCCceeecCCCCCcchh
Q 029091 39 VWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEH 118 (199)
Q Consensus 39 ~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~~~~~~~~~g~~~~LNPGpFn~KEh 118 (199)
|+|||+|++|++++++++++||+|.+|++.+..+++++|+++||+||.|+|. +++++|||||||+|||
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~------------~~~~~ln~gp~~~kE~ 68 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI------------GWRFSLNPGPFTIKEN 68 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh------------ccccccCCCCCCHHHH
Confidence 5899999999999999999999999999999999999999999999999981 4567899999999999
Q ss_pred hhhhhhhhcccCCCCcchhHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHhhhccceeeecCCcccCchhhhcc
Q 029091 119 VLISIFANAGSAFGAGSTFAVSIVNI--IKAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVS 196 (199)
Q Consensus 119 ~litIma~~a~~~~~~~a~a~~ii~~--q~lfy~~~~~~g~~il~~lstQllG~G~AGl~R~~lV~P~~miwP~~L~~~a 196 (199)
+++++||+++ ++.+++.+++.+ |..|||++.++++++++++++|++|+++||++||++|+|++|+||+.+++++
T Consensus 69 ~~vq~~asa~----~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~ 144 (624)
T PF03169_consen 69 NLVQTMASAA----GGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAE 144 (624)
T ss_pred HHHHHHHHHh----hhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHH
Confidence 9999999998 788999999999 7789999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 029091 197 LFR 199 (199)
Q Consensus 197 Lf~ 199 (199)
+++
T Consensus 145 ~i~ 147 (624)
T PF03169_consen 145 LIN 147 (624)
T ss_pred HHH
Confidence 864
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=98.57 E-value=2.2e-07 Score=90.07 Aligned_cols=127 Identities=15% Similarity=0.235 Sum_probs=108.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCceeecCCCCCCceeecCCCCCcchhh
Q 029091 40 WTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFNVKEHV 119 (199)
Q Consensus 40 ~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~~~~~~~~~g~~~~LNPGpFn~KEh~ 119 (199)
.|+|+.++|++++++.++.|.++.+|.....-.++.+.++++.+=|.|. ++|+.|+.
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~-----------------------~~t~~Enn 58 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR-----------------------DRSILENN 58 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc-----------------------cCChhHHH
Confidence 6999999999999999999999999999999999999999999888552 26999999
Q ss_pred hhhhhhhcccCCCCcchhHHHHHHHHHHHh--c--cCchHHHHHHHHHHHHHHHHHHhhhccceeeecCCcccCchhhhc
Q 029091 120 LISIFANAGSAFGAGSTFAVSIVNIIKAFY--H--RKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQV 195 (199)
Q Consensus 120 litIma~~a~~~~~~~a~a~~ii~~q~lfy--~--~~~~~g~~il~~lstQllG~G~AGl~R~~lV~P~~miwP~~L~~~ 195 (199)
++.-+|+++ .+ .+ .++.+.+..| + ++++++.-++++++.-++|.-++-.+||.+|...++.||+...+.
T Consensus 59 ivQT~asA~----~~--~a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~A 131 (591)
T TIGR00733 59 MVQTAASAA----GT--LS-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACA 131 (591)
T ss_pred HHHHHHHHH----HH--HH-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHH
Confidence 999999998 43 23 2555555444 2 357889999999999999999999999999999999999987765
Q ss_pred c
Q 029091 196 S 196 (199)
Q Consensus 196 a 196 (199)
-
T Consensus 132 e 132 (591)
T TIGR00733 132 E 132 (591)
T ss_pred H
Confidence 3
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=97.42 E-value=0.00029 Score=68.37 Aligned_cols=133 Identities=15% Similarity=0.257 Sum_probs=100.6
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCceeecCCCCCCceeecCCCCC
Q 029091 35 PSLPVWTFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNSGPFN 114 (199)
Q Consensus 35 p~~p~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~~~~~~~~~g~~~~LNPGpFn 114 (199)
-.+|..|+|..++|++.+++..+.|.++.+|......+++=+.+++.-.=|++ + ++|
T Consensus 10 ~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~---------------~--------~~s 66 (624)
T COG1297 10 AFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAF---------------K--------GSS 66 (624)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHh---------------C--------ccc
Confidence 36788999999999999999999999999999999888888888776544432 1 579
Q ss_pred cchhhhhhhhhhcccCCCCcchhHHHHHHHH----HHHhccCchHHHHHHHHHHHHHHHHHHhhhccceeeecCCcccCc
Q 029091 115 VKEHVLISIFANAGSAFGAGSTFAVSIVNII----KAFYHRKISFLASWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPS 190 (199)
Q Consensus 115 ~KEh~litIma~~a~~~~~~~a~a~~ii~~q----~lfy~~~~~~g~~il~~lstQllG~G~AGl~R~~lV~P~~miwP~ 190 (199)
+-|+.++.-||+++ .+ .+..+|.+. ..=|-+++++.--....-.--++|.=|.=.+||-+|-++++=||.
T Consensus 67 ilENNmVQT~ASAa----gt--lsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPe 140 (624)
T COG1297 67 ILENNMVQTQASAA----GT--LSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPE 140 (624)
T ss_pred hhhhHHHHHHHhhh----cc--ccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCC
Confidence 99999999999998 43 333333222 223445665554444444555777777888999999999999998
Q ss_pred hhhhcc
Q 029091 191 TLVQVS 196 (199)
Q Consensus 191 ~L~~~a 196 (199)
.....-
T Consensus 141 GvAaAE 146 (624)
T COG1297 141 GVAAAE 146 (624)
T ss_pred chhHHH
Confidence 765543
No 7
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=66.22 E-value=8 Score=23.73 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029091 44 MWFLGLLSCALLSFLNQF 61 (199)
Q Consensus 44 ~~~lG~~~~~iga~~nq~ 61 (199)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999875
No 8
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=64.24 E-value=9.3 Score=23.06 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029091 44 MWFLGLLSCALLSFLNQF 61 (199)
Q Consensus 44 ~~~lG~~~~~iga~~nq~ 61 (199)
+|++|+.+++.-+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999998865
No 9
>PRK14749 hypothetical protein; Provisional
Probab=62.53 E-value=10 Score=23.21 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 029091 44 MWFLGLLSCALLSFLNQF 61 (199)
Q Consensus 44 ~~~lG~~~~~iga~~nq~ 61 (199)
+|++|+.+++..+.+|-+
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999875
No 10
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=41.53 E-value=27 Score=26.92 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 029091 42 FRMWFLGLLSCALLSFL 58 (199)
Q Consensus 42 fR~~~lG~~~~~iga~~ 58 (199)
++||++|++-+++|+.+
T Consensus 72 ~KmwilGlvgTi~gsli 88 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLI 88 (98)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999988888654
No 11
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=40.03 E-value=37 Score=21.57 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 029091 44 MWFLGLLSCALLSFLNQFF 62 (199)
Q Consensus 44 ~~~lG~~~~~iga~~nq~F 62 (199)
+|+||+.+++--+.+|.+.
T Consensus 5 aWiLG~lLAcAFgiinAlw 23 (37)
T COG4890 5 AWILGLLLACAFGIINALW 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999888888653
No 12
>PHA02975 hypothetical protein; Provisional
Probab=34.38 E-value=45 Score=24.17 Aligned_cols=42 Identities=5% Similarity=0.112 Sum_probs=21.8
Q ss_pred HHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 23 EEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 23 ~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
+-||.+...+|.|.- ..+-+.|++=+++.++..++=.|+++|
T Consensus 25 ~vVksVLtdk~~~~~-~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 25 DTIMHVLTGKKEPKK-KSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHcCCCCCCc-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446776666655554 333344444344444555555555554
No 13
>PHA02650 hypothetical protein; Provisional
Probab=28.72 E-value=61 Score=24.18 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHhhhcccCCCCCCC----CcchhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 23 EEVRLTVLNSDDPSL----PVWTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 23 ~eVr~~v~~~DDp~~----p~~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
+-|+.+...+|.+.- .+.+-+.+++=+++.++..++=.|+++|
T Consensus 25 ~VVkSVLtD~~~~~~~~~~~~~~~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 25 DVVKSVLSDEDGSKKTIKSVSWFNGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred HHHHHHHcCCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555544433 2222333333334444444444555554
No 14
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=24.29 E-value=72 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccceeee
Q 029091 154 SFLASWLLIITTQVLGYGWAGLLRKYVVE 182 (199)
Q Consensus 154 ~~g~~il~~lstQllG~G~AGl~R~~lV~ 182 (199)
++-|+++...-.-++|..|+|+.|+.+..
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~ 33 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLFIRRILIN 33 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777889999999999987654
No 15
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=23.38 E-value=1.3e+02 Score=31.66 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=56.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhcccCcc--------chhHHHHHHHHhhhhhhhhhcCCCceeecCCCCCCceeecC
Q 029091 39 VWTFRMWFLGLLSCALLSFLNQFFAYRTEPL--------IITQITVQVATLPIGRFLAATLPETRFRIPGCGSRLFSLNS 110 (199)
Q Consensus 39 ~~TfR~~~lG~~~~~iga~~nq~F~~R~p~i--------~is~~~~ql~~~p~G~~~a~~lP~~~~~~~~~~g~~~~LNP 110 (199)
|...=+|+|...|= ..|.++||.- .++.+++.++++.+|...+.+ |.
T Consensus 728 ~~~~~~~~l~~~wk-------~lfa~vPP~~~~~g~~~f~~sI~~Ig~l~~~i~~~a~~i------------g~------ 782 (928)
T TIGR00845 728 CFDYVMHFLTVFWK-------VLFAFVPPTEYWGGWACFVVSILMIGVLTAFIGDLASHF------------GC------ 782 (928)
T ss_pred HHHHHHHHHHhHHH-------hEEeecCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH------
Confidence 45556677777765 4566677742 245666777777777766542 11
Q ss_pred CCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHH-HhccCchHHHHHHHHHHHHHHHHHHhhhcc
Q 029091 111 GPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKA-FYHRKISFLASWLLIITTQVLGYGWAGLLR 177 (199)
Q Consensus 111 GpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~l-fy~~~~~~g~~il~~lstQllG~G~AGl~R 177 (199)
-++++|.++-..+.+.++ +-.=+.+.++++.+. +.+ ...|-.+---+.--++|.|++.+++
T Consensus 783 -~~gi~~~viGlt~vA~GT---SlPEl~~S~~aA~~~~~~d--~aigNv~GSNifNi~l~lGv~~~i~ 844 (928)
T TIGR00845 783 -TIGLKDSVTAVVFVALGT---SVPDTFASKVAATQDQYAD--ASIGNVTGSNAVNVFLGIGVAWSIA 844 (928)
T ss_pred -HcCCCHHhhhheeeeEec---CcHHHHHHHHHHHcCCCCc--eeEEeecchHHHHHHHHHHHHHHHh
Confidence 256677766555554441 111233445555442 222 2223333333344455666666655
No 16
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=23.30 E-value=99 Score=22.61 Aligned_cols=43 Identities=7% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHhhhcccCCCCCCC----CcchhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 22 VEEVRLTVLNSDDPSL----PVWTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 22 y~eVr~~v~~~DDp~~----p~~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
-++|+.+....+.... +..|+--++++++++++...+ .|+++|
T Consensus 24 i~vVksVltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l-~flYLK 70 (72)
T PF12575_consen 24 INVVKSVLTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLL-TFLYLK 70 (72)
T ss_pred HHHHHHHHcCCccccccCCCCcchHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 4567777655444222 223444666777766666555 555554
No 17
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=23.15 E-value=79 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHH---HhhhhhcccCccch
Q 029091 44 MWFLGLLSCALLSF---LNQFFAYRTEPLII 71 (199)
Q Consensus 44 ~~~lG~~~~~iga~---~nq~F~~R~p~i~i 71 (199)
+.+.|++|++.+.. ++.++.+|-+.+.|
T Consensus 12 gi~~G~l~~~~~~l~~~l~~~~~~~~~~i~V 42 (53)
T PF11167_consen 12 GILYGLLWAIKGILYGFLSRRFKIKKPRINV 42 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCeEEE
Confidence 56777777776655 33445555555444
No 18
>PHA02819 hypothetical protein; Provisional
Probab=23.09 E-value=97 Score=22.60 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHhhhcccCCCCCCC--CcchhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 23 EEVRLTVLNSDDPSL--PVWTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 23 ~eVr~~v~~~DDp~~--p~~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
+-||.+... |.|.- .+.+-+.+++=+++.++..++=.|+++|
T Consensus 25 ~VVksVLtd-~s~~~~~~~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 25 NVVKSVLNN-ENYNKKTKKSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred HHHHHHHcC-CCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555 55443 2233333333334444444555555554
No 19
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=22.87 E-value=92 Score=25.06 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=30.6
Q ss_pred HHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCc
Q 029091 55 LSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPET 94 (199)
Q Consensus 55 ga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~ 94 (199)
...+.-+|..-...+-+-++++.+++|.+|..+ +||+.
T Consensus 19 ~i~L~~~~~~sf~~~l~~sl~ltvvaY~iGDl~--ILPr~ 56 (136)
T PF10710_consen 19 YIILGLFFGASFGDILLISLVLTVVAYLIGDLF--ILPRT 56 (136)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh--eeeCC
Confidence 344556777777888888999999999999987 78875
No 20
>PHA03054 IMV membrane protein; Provisional
Probab=21.15 E-value=1.1e+02 Score=22.27 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=18.8
Q ss_pred HHhhhcccCCCCCCC---CcchhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 23 EEVRLTVLNSDDPSL---PVWTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 23 ~eVr~~v~~~DDp~~---p~~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
+-|+.+...+|.+.- .+.+-+.+++=+++.++..++=.|+++|
T Consensus 25 ~vV~sVl~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 25 EIVKSVLSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred HHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555544433322 2233333333334444444555555554
Done!