Query 029091
Match_columns 199
No_of_seqs 113 out of 655
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kw4_A Polyhomeotic; SAM domai 15.5 38 0.0013 23.9 0.4 42 1-45 1-42 (89)
2 2fnf_X Putative RAS effector N 9.1 96 0.0033 20.9 0.7 18 23-40 2-19 (72)
3 2jp3_A FXYD domain-containing 8.3 2.8E+02 0.0097 19.0 2.9 10 113-122 52-61 (67)
4 2xpp_A IWS1, ECU08_0440; trans 6.1 3.3E+02 0.011 21.0 2.7 33 19-51 60-92 (145)
5 2hjj_A Hypothetical protein YK 5.5 2.2E+02 0.0077 20.4 1.2 16 107-123 6-21 (87)
6 2dco_A S1P4 first extracellula 5.3 1.6E+02 0.0056 17.4 0.3 16 103-118 16-31 (34)
7 4dve_A Biotin transporter BIOY 5.0 9.3E+02 0.032 19.2 4.8 49 40-88 15-67 (198)
8 1guu_A C-MYB, MYB proto-oncoge 4.8 2.3E+02 0.008 17.1 0.8 18 108-125 1-18 (52)
9 3din_D Preprotein translocase 4.7 6.7E+02 0.023 16.2 3.2 43 20-63 10-52 (65)
10 2zy9_A Mg2+ transporter MGTE; 4.4 7.2E+02 0.025 22.0 4.1 46 45-92 387-432 (473)
No 1
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=15.51 E-value=38 Score=23.91 Aligned_cols=42 Identities=14% Similarity=-0.050 Sum_probs=17.9
Q ss_pred CCCCccccccccCCCCCCCChHHHhhhcccCCCCCCCCcchhhHH
Q 029091 1 MAPTNVTSATAADIDGDELSPVEEVRLTVLNSDDPSLPVWTFRMW 45 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~sPy~eVr~~v~~~DDp~~p~~TfR~~ 45 (199)
|.||||..... .+..++|+ ++|..-+...++-+.-+..||..
T Consensus 1 ~~~~~~~~~~~--~~v~~Ws~-edV~~wL~~l~gl~~y~~~F~~~ 42 (89)
T 1kw4_A 1 METKRVNGTDR--PPISSWSV-DDVSNFIRELPGCQDYVDDFIQQ 42 (89)
T ss_dssp ---------CC--CCGGGCCH-HHHHHHHHTSTTCGGGHHHHHHT
T ss_pred CCCcCCCCCCC--CCchhCCH-HHHHHHHHHCcChHHHHHHHHHh
Confidence 78898876543 35556777 77766555443333445666643
No 2
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=9.08 E-value=96 Score=20.90 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=4.1
Q ss_pred HHhhhcccCCCCCCCCcc
Q 029091 23 EEVRLTVLNSDDPSLPVW 40 (199)
Q Consensus 23 ~eVr~~v~~~DDp~~p~~ 40 (199)
++||.+....+||+++..
T Consensus 2 ~~~~~~~~~~~dp~~~~~ 19 (72)
T 2fnf_X 2 RDVRSIFEQPQDPRVLAE 19 (72)
T ss_dssp ------------CCCCGG
T ss_pred cchhhhccCCCCcccccc
Confidence 678999888888887654
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.29 E-value=2.8e+02 Score=18.98 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=6.0
Q ss_pred CCcchhhhhh
Q 029091 113 FNVKEHVLIS 122 (199)
Q Consensus 113 Fn~KEh~lit 122 (199)
=+-+|+.+|+
T Consensus 52 ~~~~a~~lit 61 (67)
T 2jp3_A 52 LPEKVTPLIT 61 (67)
T ss_dssp STTTSHHHHS
T ss_pred CCccCCceec
Confidence 3456777665
No 4
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=6.14 E-value=3.3e+02 Score=20.96 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=25.9
Q ss_pred CChHHHhhhcccCCCCCCCCcchhhHHHHHHHH
Q 029091 19 LSPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLS 51 (199)
Q Consensus 19 ~sPy~eVr~~v~~~DDp~~p~~TfR~~~lG~~~ 51 (199)
+.-+..++.-+.+-.|-++|..++|.-++.++.
T Consensus 60 ~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~ 92 (145)
T 2xpp_A 60 EGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLK 92 (145)
T ss_dssp TTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHH
Confidence 444566677778888999999999999887764
No 5
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=5.55 E-value=2.2e+02 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=8.1
Q ss_pred eecCCCCCcchhhhhhh
Q 029091 107 SLNSGPFNVKEHVLISI 123 (199)
Q Consensus 107 ~LNPGpFn~KEh~litI 123 (199)
.|.+|||+ +|++...+
T Consensus 6 ~LpegpFt-ReQA~aV~ 21 (87)
T 2hjj_A 6 LLPPGPFT-RRQAQAVT 21 (87)
T ss_dssp ----CCCC-HHHHHHHH
T ss_pred cCCCCCcc-HHHHHHHH
Confidence 46899999 66655443
No 6
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=5.28 E-value=1.6e+02 Score=17.38 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=12.2
Q ss_pred CCceeecCCCCCcchh
Q 029091 103 SRLFSLNSGPFNVKEH 118 (199)
Q Consensus 103 g~~~~LNPGpFn~KEh 118 (199)
.+.|.|.|-.|-.+|-
T Consensus 16 ~rTFrLaPa~WflREg 31 (34)
T 2dco_A 16 ARTFRLAPAQWSCRET 31 (34)
T ss_dssp GGGGTSSSSTTSHHHH
T ss_pred cceEEechHHHHHHHh
Confidence 3456789999998884
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.97 E-value=9.3e+02 Score=19.18 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=37.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhh----hhcccCccchhHHHHHHHHhhhhhhhh
Q 029091 40 WTFRMWFLGLLSCALLSFLNQF----FAYRTEPLIITQITVQVATLPIGRFLA 88 (199)
Q Consensus 40 ~TfR~~~lG~~~~~iga~~nq~----F~~R~p~i~is~~~~ql~~~p~G~~~a 88 (199)
...|...+-.+++++.+.+.++ ..+-+.+++....++.+...-+|.-+.
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G 67 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYG 67 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCBCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHHHHHHHHChhHH
Confidence 4677777777788877777765 334466899999999999999997654
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=4.84 E-value=2.3e+02 Score=17.11 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=11.7
Q ss_pred ecCCCCCcchhhhhhhhh
Q 029091 108 LNSGPFNVKEHVLISIFA 125 (199)
Q Consensus 108 LNPGpFn~KEh~litIma 125 (199)
|+-|+|+..|.....-+.
T Consensus 1 i~~~~Wt~eED~~L~~~v 18 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLV 18 (52)
T ss_dssp --CCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 467899999987654333
No 9
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=4.68 E-value=6.7e+02 Score=16.24 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=29.1
Q ss_pred ChHHHhhhcccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhh
Q 029091 20 SPVEEVRLTVLNSDDPSLPVWTFRMWFLGLLSCALLSFLNQFFA 63 (199)
Q Consensus 20 sPy~eVr~~v~~~DDp~~p~~TfR~~~lG~~~~~iga~~nq~F~ 63 (199)
+-+.|.|+++=|+-+ ++-..|.=..+.-++++++..+++..|+
T Consensus 10 ~v~~ElkKV~WPtr~-e~~~~T~vViv~~~i~~~~i~~vD~~~~ 52 (65)
T 3din_D 10 EVIAEAKKISWPSRK-ELLTSFGVVLVILAVTSVYFFVLDFIFS 52 (65)
T ss_dssp CHHHHHHHHHHHHCC-CCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcCHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788887755444 3556777777777777777777776665
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=4.36 E-value=7.2e+02 Score=21.98 Aligned_cols=46 Identities=22% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCC
Q 029091 45 WFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLP 92 (199)
Q Consensus 45 ~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP 92 (199)
.++|++++++...+..++ +. +.+.+......++...++.+....+|
T Consensus 387 ~~~g~~~~~~~~~~~~~~-~~-~~~~~~v~~a~~~~~~~a~~~g~~~p 432 (473)
T 2zy9_A 387 LLLGLTLSFLLVGKVYWD-GH-PLLLPVVGVSLVLIVFFANLVGAMLP 432 (473)
T ss_dssp HHHHHHHHHHHHHHHHHH-TC-TTSHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655554 33 44443333333333444444444555
Done!