Query 029091
Match_columns 199
No_of_seqs 113 out of 655
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 11:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029091.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029091hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o8ra1 a.7.15.1 (A:4-112) Pol 11.1 57 0.0041 21.7 2.0 32 28-65 19-51 (109)
2 d1xdpa1 a.7.15.1 (A:2-106) Pol 10.5 33 0.0024 23.2 0.5 33 27-65 19-52 (105)
3 d1lnsa1 a.40.2.1 (A:1-145) X-P 8.1 46 0.0033 24.2 0.5 23 148-170 62-84 (145)
4 d1dt9a2 d.79.3.2 (A:277-422) C 4.9 60 0.0044 23.0 -0.5 7 171-177 132-138 (146)
5 d1v54l_ f.23.6.1 (L:) Mitochon 4.3 2.6E+02 0.019 16.2 2.3 17 112-128 11-27 (46)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 4.0 3.3E+02 0.024 14.4 2.5 22 157-178 7-28 (32)
7 d1y6kr2 b.1.2.1 (R:101-206) In 3.8 1E+02 0.0074 21.3 0.0 12 108-120 92-103 (106)
8 d3dtua1 f.24.1.1 (A:14-551) Ba 3.7 1.7E+02 0.012 25.2 1.5 23 171-193 462-484 (538)
9 d1cg5b_ a.1.1.2 (B:) Hemoglobi 3.6 5.1E+02 0.037 17.0 4.0 95 22-150 35-130 (141)
10 d1nvta1 c.2.1.7 (A:111-287) Sh 3.6 2.9E+02 0.021 18.8 2.6 38 113-154 121-163 (177)
No 1
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=11.09 E-value=57 Score=21.74 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.9
Q ss_pred cccCCCCCCCCc-chhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 28 TVLNSDDPSLPV-WTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 28 ~v~~~DDp~~p~-~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
|.....||+.|. +-+| ++++..+=+..||.-|
T Consensus 19 VL~~a~d~~~PllER~~------Fl~I~ssNLDEFFmVR 51 (109)
T d2o8ra1 19 VLMEAADRTLPVYDRIK------FLSIFSSNLEEFYTVR 51 (109)
T ss_dssp HHHHHHCTTSCHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHH------HHHHHHhhHHHHHHHH
Confidence 344445777776 4455 5567788999999999
No 2
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=10.54 E-value=33 Score=23.19 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.8
Q ss_pred hcccCCCCCCCCc-chhhHHHHHHHHHHHHHHHhhhhhcc
Q 029091 27 LTVLNSDDPSLPV-WTFRMWFLGLLSCALLSFLNQFFAYR 65 (199)
Q Consensus 27 ~~v~~~DDp~~p~-~TfR~~~lG~~~~~iga~~nq~F~~R 65 (199)
.|+....||+.|. +-+| +++++++=+..||.-|
T Consensus 19 RVL~~a~~~~~PllERlr------Fl~I~ssNLDEFFmVR 52 (105)
T d1xdpa1 19 RVLQEAADKSNPLIERMR------FLGIYSNNLDEFYKVR 52 (105)
T ss_dssp HHHHHHHCTTSCHHHHHH------HHHHHHHHHHHHHHTH
T ss_pred HHHHHHcCCCCCHHHHHH------HHHHHHhhHHHHHHhh
Confidence 4445556777776 4566 6778899999999999
No 3
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=8.11 E-value=46 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.7
Q ss_pred HhccCchHHHHHHHHHHHHHHHH
Q 029091 148 FYHRKISFLASWLLIITTQVLGY 170 (199)
Q Consensus 148 fy~~~~~~g~~il~~lstQllG~ 170 (199)
|++.+-.....++..++-|++||
T Consensus 62 fl~s~~~lt~~vFY~VALQLLgF 84 (145)
T d1lnsa1 62 FLKSSIELDWEIFWNIALQLLDF 84 (145)
T ss_dssp HHHSSCCCCHHHHHHHHHHHTTC
T ss_pred HHcCCCcCCHHHHHHHHHHHcCC
Confidence 77777777888888899999997
No 4
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=60 Score=23.04 Aligned_cols=7 Identities=57% Similarity=1.113 Sum_probs=5.7
Q ss_pred HHhhhcc
Q 029091 171 GWAGLLR 177 (199)
Q Consensus 171 G~AGl~R 177 (199)
|+||+||
T Consensus 132 GiaAiLR 138 (146)
T d1dt9a2 132 GIGGILR 138 (146)
T ss_dssp TEEEECS
T ss_pred CEEEEEE
Confidence 7888887
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.30 E-value=2.6e+02 Score=16.22 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=10.9
Q ss_pred CCCcchhhhhhhhhhcc
Q 029091 112 PFNVKEHVLISIFANAG 128 (199)
Q Consensus 112 pFn~KEh~litIma~~a 128 (199)
||+++..--.+.|-.+-
T Consensus 11 PFsv~Nk~rLla~m~~~ 27 (46)
T d1v54l_ 11 PFSVENKWRLLAMMTLF 27 (46)
T ss_dssp SSCCSSHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHH
Confidence 68877776665555554
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.03 E-value=3.3e+02 Score=14.38 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 029091 157 ASWLLIITTQVLGYGWAGLLRK 178 (199)
Q Consensus 157 ~~il~~lstQllG~G~AGl~R~ 178 (199)
.+-++.+..-+.|+|+..++-+
T Consensus 7 ~aa~lsfglifvgwglgalllk 28 (32)
T d2e74f1 7 YAALLSFGLIFVGWGLGVLLLK 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhHHHHHHhh
Confidence 3445666677788888776543
No 7
>d1y6kr2 b.1.2.1 (R:101-206) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=1e+02 Score=21.25 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=8.9
Q ss_pred ecCCCCCcchhhh
Q 029091 108 LNSGPFNVKEHVL 120 (199)
Q Consensus 108 LNPGpFn~KEh~l 120 (199)
+|+|-|+ ||.|+
T Consensus 92 ~N~g~wS-~E~Ci 103 (106)
T d1y6kr2 92 SNKGMWS-KEECI 103 (106)
T ss_dssp CCCBCCC-CCEEE
T ss_pred cCccccC-cceeE
Confidence 7999999 55543
No 8
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.74 E-value=1.7e+02 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.5
Q ss_pred HHhhhccceeeecCCcccCchhh
Q 029091 171 GWAGLLRKYVVEPAHMWWPSTLV 193 (199)
Q Consensus 171 G~AGl~R~~lV~P~~miwP~~L~ 193 (199)
|+.|+-||.-.||.+......+.
T Consensus 462 Gl~GmpRR~~~y~~~~~~~n~i~ 484 (538)
T d3dtua1 462 GRQGMPRRYIDYPEAFATWNFVS 484 (538)
T ss_dssp HHTTCBSSCSCCCGGGHHHHHHH
T ss_pred HcCCCcccccCCcHHHHHHHHHH
Confidence 56899999999987654444433
No 9
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}
Probab=3.60 E-value=5.1e+02 Score=17.04 Aligned_cols=95 Identities=7% Similarity=-0.067 Sum_probs=54.0
Q ss_pred HHHhhhcccCCCCCCCCcc-hhhHHHHHHHHHHHHHHHhhhhhcccCccchhHHHHHHHHhhhhhhhhhcCCCceeecCC
Q 029091 22 VEEVRLTVLNSDDPSLPVW-TFRMWFLGLLSCALLSFLNQFFAYRTEPLIITQITVQVATLPIGRFLAATLPETRFRIPG 100 (199)
Q Consensus 22 y~eVr~~v~~~DDp~~p~~-TfR~~~lG~~~~~iga~~nq~F~~R~p~i~is~~~~ql~~~p~G~~~a~~lP~~~~~~~~ 100 (199)
||+.+...+..||.+.+.+ -+|+ =..-++.+++.+++.+=.+ ..++ ..+|+.=.+
T Consensus 35 ~P~~k~~F~~f~~~~~~~~~~~~~-H~~~v~~al~~~i~~Ld~l-------~~~l-----~~Lg~~H~~----------- 90 (141)
T d1cg5b_ 35 YPWTTRLFSKLQGLFSANDIGVQQ-HADKVQRALGEAIDDLKKV-------EINF-----QNLSGKHQE----------- 90 (141)
T ss_dssp SGGGGTTCGGGTTCCSTTSHHHHH-HHHHHHHHHHHHHHTTTSH-------HHHT-----HHHHHHHHH-----------
T ss_pred ChhHHHhcccCCCCCCCCCHHHHH-HHHHHHHHHHHHHHhhccc-------chHH-----HHHHHHHHH-----------
Confidence 5777777766555444322 2333 2344667777777755431 1111 133543221
Q ss_pred CCCCceeecCCCCCcchhhhhhhhhhcccCCCCcchhHHHHHHHHHHHhc
Q 029091 101 CGSRLFSLNSGPFNVKEHVLISIFANAGSAFGAGSTFAVSIVNIIKAFYH 150 (199)
Q Consensus 101 ~~g~~~~LNPGpFn~KEh~litIma~~a~~~~~~~a~a~~ii~~q~lfy~ 150 (199)
+...|..|..-.++++..++..- |..+.-++-.+=+++|+
T Consensus 91 -----~~v~p~~F~~~g~~ll~~l~~~l-----g~~ft~e~~~AW~k~~~ 130 (141)
T d1cg5b_ 91 -----IGVDTQNFKLLGQTFMVELALHY-----KKTFRPKEHAAAYKFFR 130 (141)
T ss_dssp -----HTCCTHHHHHHHHHHHHHHHHHH-----GGGCCHHHHHHHHHHHH
T ss_pred -----cCCCcHHHHHHHHHHHHHHHHHc-----CccCCHHHHHHHHHHHH
Confidence 12467778888888888887774 45577777777666664
No 10
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.59 E-value=2.9e+02 Score=18.83 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=26.6
Q ss_pred CCcchhhhhhhhhhcccCCCCcchhHHHHHHHH-----HHHhccCch
Q 029091 113 FNVKEHVLISIFANAGSAFGAGSTFAVSIVNII-----KAFYHRKIS 154 (199)
Q Consensus 113 Fn~KEh~litIma~~a~~~~~~~a~a~~ii~~q-----~lfy~~~~~ 154 (199)
++.||+.+....-+.+ .....+.+++..| ++|.+.+++
T Consensus 121 y~p~~T~l~~~a~~~G----~~~i~Gl~MLv~Qa~~qf~lwtg~~~~ 163 (177)
T d1nvta1 121 YNPLETVLLKEAKKVN----AKTINGLGMLIYQGAVAFKIWTGVEPN 163 (177)
T ss_dssp CSSSSCHHHHHHHTTT----CEEECTHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCcHhHHHHHHHHHCC----CcccCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4567777777766665 5556778888776 468888765
Done!