BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029092
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q640I9|KDM2B_XENLA Lysine-specific demethylase 2B OS=Xenopus laevis GN=kdm2b PE=2 SV=1
Length = 1259
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 45 RTNAYNVPKLEPFSRTKLERAVKEPSLIE 73
R YNV LE FS TKLER VK P++++
Sbjct: 136 REKLYNVISLE-FSHTKLERVVKRPTVVD 163
>sp|Q6P1G2|KDM2B_MOUSE Lysine-specific demethylase 2B OS=Mus musculus GN=Kdm2b PE=1 SV=1
Length = 1309
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 43 SSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTL 86
+ R YNV LE FS TKLE VK P+++ DL D+ +
Sbjct: 134 AQRDKLYNVISLE-FSHTKLEHLVKRPTVV-----DLVDWVDNM 171
>sp|Q8NHM5|KDM2B_HUMAN Lysine-specific demethylase 2B OS=Homo sapiens GN=KDM2B PE=1 SV=1
Length = 1336
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 43 SSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTL 86
+ R YNV LE FS TKLE VK P+++ DL D+ +
Sbjct: 165 AQRDKLYNVISLE-FSHTKLEHLVKRPTVV-----DLVDWVDNM 202
>sp|A8FX83|HTPG_SHESH Chaperone protein HtpG OS=Shewanella sediminis (strain HAW-EB3)
GN=htpG PE=3 SV=1
Length = 638
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E N L D+ +G +S R EL
Sbjct: 445 ADSHEAAANSPHLELLRKKGIEVVLMSERIDEWLINHLTDF----DGKQLHSVTRGDLEL 500
Query: 102 KDLEKELPKEDIEKLILQSGG----VKSLIGCLHGISSIRKAKTDGFA------SEEKTL 151
DLE KE EKL +S G +K +G + TD A E T
Sbjct: 501 GDLEDAGEKEAQEKLETESEGLVKRIKDSLGEKVSAVKVTTRLTDTPACVVAGEGEMSTQ 560
Query: 152 GSKRIESSSRPVPDGLPKTLEELEEEERARMPD 184
K +E++ + VP+ P E AR+ D
Sbjct: 561 MIKLMEAAGQAVPESKPTFEINPEHPLVARLND 593
>sp|Q9R0E2|PLOD1_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Mus musculus
GN=Plod1 PE=1 SV=1
Length = 728
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 102 KDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKAKTDG-FASEEKTLGSKRIESSS 160
K LEK KED+ L + S V G + ++AK+ F++EE +R+E+
Sbjct: 84 KALEKHADKEDLVILFVDSYDVVFASGPRELLKKFQQAKSQVVFSAEEHIYPDRRLEAKY 143
Query: 161 RPVPDG 166
VPDG
Sbjct: 144 PTVPDG 149
>sp|Q4V7H1|STIL_XENLA SCL-interrupting locus protein homolog OS=Xenopus laevis GN=stil
PE=2 SV=2
Length = 1281
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 6 VAGSCSVPLRLESKDNLNAGACFSDTT---RSASVACCSSSSRTNAYNVPKLEPFSRTKL 62
V GSC E + N+N A TT RS S + SS+ N +NV SR
Sbjct: 562 VKGSC------EQEQNINGSAQPQGTTPLMRSGSYSRQVSSNFPN-HNV-TFPLHSRHVA 613
Query: 63 ERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLI 117
E A P+L + ++ C +L S +CW A L E P E E ++
Sbjct: 614 EVAKPSPNLAPFHQTNVCTSCHSLVSCHSKNCWPAMGHLTYHTMENPPETCESVM 668
>sp|P28796|TNAA_PROVU Tryptophanase OS=Proteus vulgaris GN=tnaA PE=1 SV=1
Length = 467
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 65 AVKEPSLIEKSENDLAD--YCSTLEGDDSYSCWRAYFELKDLEKELPKED 112
AV L + N ++D + + + GD++Y+ R Y++LKD KEL D
Sbjct: 43 AVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYD 92
>sp|Q662L1|SECA_BORGA Protein translocase subunit SecA OS=Borrelia garinii (strain PBi)
GN=secA PE=3 SV=1
Length = 899
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 64 RAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSG 121
+AV EP++ KS+ DL DY TL + W +D KE K E L+SG
Sbjct: 3 KAVLEPAIGSKSKRDLKDYLPTLRNINKLERWALLLADEDFSKETQKLKYE---LKSG 57
>sp|A3QF50|HTPG_SHELP Chaperone protein HtpG OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=htpG PE=3 SV=1
Length = 639
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 42 SSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFEL 101
+ S A N P LE + +E + + E+ + L ++ S +G +S R EL
Sbjct: 446 ADSHEAAANSPHLELLRKKGIEVLL----MSERIDEWLINHLSEFDGKQLHSVTRGDLEL 501
Query: 102 KDLEKELPKEDIEKLILQSGG----VKSLIG 128
+LE KE EKL +S G VK ++G
Sbjct: 502 GELEDAAEKEAQEKLETESEGLVKRVKEVLG 532
>sp|B2V7F0|ILVC_SULSY Ketol-acid reductoisomerase OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=ilvC PE=3 SV=1
Length = 332
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 116 LILQSGGVKSLIGCLHGISSIRKAKTDGF 144
L L+ G+K +IG L G SI KAK +GF
Sbjct: 34 LNLRDSGIKVIIGLLAGSRSIEKAKAEGF 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,936,661
Number of Sequences: 539616
Number of extensions: 2993611
Number of successful extensions: 8232
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 8221
Number of HSP's gapped (non-prelim): 36
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)