Query 029094
Match_columns 199
No_of_seqs 109 out of 447
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_C Fumarate reductase 15 k 59.7 43 0.0015 25.3 7.6 47 83-129 60-112 (130)
2 1fjk_A Cardiac phospholamban; 24.0 1E+02 0.0036 19.1 3.7 27 60-86 22-48 (52)
3 3arc_X Photosystem II PSBX pro 16.8 1E+02 0.0034 18.5 2.4 20 140-159 3-22 (39)
4 3b5x_A Lipid A export ATP-bind 14.8 6.1E+02 0.021 22.7 8.4 20 54-73 120-139 (582)
5 3bz1_X Photosystem II PSBX pro 13.5 97 0.0033 19.5 1.8 22 138-159 11-32 (50)
6 2yl4_A ATP-binding cassette SU 12.7 6.3E+02 0.021 22.7 7.9 17 54-70 117-133 (595)
7 4ev6_A Magnesium transport pro 11.7 6.4E+02 0.022 20.9 7.2 15 79-93 281-295 (339)
8 2y1b_A RCSF protein, putative 10.3 1.3E+02 0.0043 22.7 1.8 23 50-72 66-88 (128)
9 3b60_A Lipid A export ATP-bind 9.6 7.4E+02 0.025 22.1 7.2 20 54-73 120-139 (582)
10 2ftx_B Hypothetical 24.6 kDa p 9.4 1.2E+02 0.0039 20.1 1.2 8 67-74 51-58 (64)
No 1
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=59.73 E-value=43 Score=25.32 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHh-CCCCeEeccccchHHHHHHHH
Q 029094 83 LSLLWHPVSMIVFIVVFVLWL-----FFYFA-RDDPVVVFNQTLDDKFVLGCL 129 (199)
Q Consensus 83 i~ll~~P~~Li~l~~~~~~~~-----~i~~~-~~~p~~i~g~~~~~~~v~~~l 129 (199)
+..+.||+.++.=++..++.+ ++... +.-++.++|+.++++.+..++
T Consensus 60 v~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~~~~~~~i~~~~ 112 (130)
T 1kf6_C 60 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSL 112 (130)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCCcCChHHHHHHH
Confidence 445678988776444332222 11111 334678889888887664433
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=23.95 E-value=1e+02 Score=19.10 Aligned_cols=27 Identities=22% Similarity=0.713 Sum_probs=18.2
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 029094 60 SRARRNASYFRVNYAVVMLFILFLSLL 86 (199)
Q Consensus 60 ~Ri~~Nl~yF~~NY~~i~~~~~~i~ll 86 (199)
...+.|+.---.|+-++.+.++++|++
T Consensus 22 ~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 22 QQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778877778887776666555544
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=16.84 E-value=1e+02 Score=18.50 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 029094 140 TDVGTNVLVGLIVGVVLVGL 159 (199)
Q Consensus 140 ~~~~~~l~~~l~~s~~vvl~ 159 (199)
+.+..++++++.++.+++.+
T Consensus 3 TpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 3 TPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 34455666666666554443
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=14.85 E-value=6.1e+02 Score=22.71 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHhHHhHHHHH
Q 029094 54 DYNDAISRARRNASYFRVNY 73 (199)
Q Consensus 54 s~~~~~~Ri~~Nl~yF~~NY 73 (199)
+.++..+|+.+.+...+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45889999987776555443
No 5
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=13.52 E-value=97 Score=19.54 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=15.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH
Q 029094 138 ILTDVGTNVLVGLIVGVVLVGL 159 (199)
Q Consensus 138 ~~~~~~~~l~~~l~~s~~vvl~ 159 (199)
-++.+..++++++.++.+++.+
T Consensus 11 ~mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 11 TITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888777665544
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=12.69 E-value=6.3e+02 Score=22.70 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHhHHhHH
Q 029094 54 DYNDAISRARRNASYFR 70 (199)
Q Consensus 54 s~~~~~~Ri~~Nl~yF~ 70 (199)
+.++..+|+.+.....+
T Consensus 117 ~~g~l~~r~~~d~~~i~ 133 (595)
T 2yl4_A 117 RTGELINRLSSDTALLG 133 (595)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 56899999987665444
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=11.68 E-value=6.4e+02 Score=20.86 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029094 79 FILFLSLLWHPVSMI 93 (199)
Q Consensus 79 ~~~~i~ll~~P~~Li 93 (199)
.+.+++.+.-|..++
T Consensus 281 ~LTiit~IflP~T~I 295 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWI 295 (339)
T ss_dssp HHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555554433
No 8
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=10.27 E-value=1.3e+02 Score=22.67 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHHhHHhHHHH
Q 029094 50 SLPADYNDAISRARRNASYFRVN 72 (199)
Q Consensus 50 s~P~s~~~~~~Ri~~Nl~yF~~N 72 (199)
..|.+..++..|++++..+..+|
T Consensus 66 d~Pasis~Ar~~lr~kAa~~gAN 88 (128)
T 2y1b_A 66 DSPPSIPTARKRMQINASKMKAN 88 (128)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 66789999999999999999888
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=9.63 E-value=7.4e+02 Score=22.14 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHhHHhHHHHH
Q 029094 54 DYNDAISRARRNASYFRVNY 73 (199)
Q Consensus 54 s~~~~~~Ri~~Nl~yF~~NY 73 (199)
+.++..+|+.+.+...+..|
T Consensus 120 ~~g~l~~r~~~d~~~i~~~~ 139 (582)
T 3b60_A 120 STGTLLSRITYDSEQVASSS 139 (582)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 46899999987776555443
No 10
>2ftx_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.300.1.2
Probab=9.43 E-value=1.2e+02 Score=20.12 Aligned_cols=8 Identities=13% Similarity=0.883 Sum_probs=6.4
Q ss_pred HhHHHHHH
Q 029094 67 SYFRVNYA 74 (199)
Q Consensus 67 ~yF~~NY~ 74 (199)
.||.+||+
T Consensus 51 ~fFytnyi 58 (64)
T 2ftx_B 51 DFYKTKYI 58 (64)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 57888886
Done!