Query 029094
Match_columns 199
No_of_seqs 109 out of 447
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6c_ f.21.2.2 (C:) Fumarate 50.8 21 0.0015 25.3 6.3 46 85-130 62-113 (130)
2 d2ftxb1 d.300.1.2 (B:155-213) 18.7 20 0.0015 21.9 1.2 8 67-74 46-53 (59)
3 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 11.1 29 0.0021 21.9 0.4 19 54-72 18-36 (75)
4 d2axti1 f.23.37.1 (I:1-35) Pho 10.8 26 0.0019 19.0 0.0 6 189-194 27-32 (35)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.4 3.2E+02 0.023 20.4 7.5 43 88-138 27-69 (248)
6 d1jb0m_ f.23.19.1 (M:) Subunit 9.3 1.4E+02 0.0099 15.4 3.2 18 120-137 3-20 (31)
7 d1kqfb2 f.23.22.1 (B:246-290) 8.2 1.9E+02 0.014 16.3 3.3 25 149-175 19-43 (45)
8 d2a07f1 a.4.5.14 (F:503-584) F 7.6 77 0.0056 20.1 1.4 20 54-73 24-43 (82)
9 d2axia1 a.42.1.1 (A:25-109) MD 7.5 44 0.0032 21.7 0.1 28 38-66 56-83 (85)
10 d2q7ra1 f.56.1.1 (A:1-139) Ara 7.4 3.3E+02 0.024 18.3 11.1 43 49-91 39-82 (139)
No 1
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=50.77 E-value=21 Score=25.25 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHh-CCCCeEeccccchHHHHHHHHH
Q 029094 85 LLWHPVSMIVFIVVFVLWL-----FFYFA-RDDPVVVFNQTLDDKFVLGCLT 130 (199)
Q Consensus 85 ll~~P~~Li~l~~~~~~~~-----~i~~~-~~~p~~i~g~~~~~~~v~~~l~ 130 (199)
.+.||+.++.=++..++.+ ++... +.-|+.+.|+.++++.+..++.
T Consensus 62 flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~~w 113 (130)
T d1kf6c_ 62 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW 113 (130)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHHHH
Confidence 3568887776333322221 11111 3346778888888876655443
No 2
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.74 E-value=20 Score=21.91 Aligned_cols=8 Identities=13% Similarity=0.883 Sum_probs=6.9
Q ss_pred HhHHHHHH
Q 029094 67 SYFRVNYA 74 (199)
Q Consensus 67 ~yF~~NY~ 74 (199)
.||.+||+
T Consensus 46 ~fF~tnYi 53 (59)
T d2ftxb1 46 DFYKTKYI 53 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68999997
No 3
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.10 E-value=29 Score=21.88 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=11.9
Q ss_pred ChHHHHHHHHHhHHhHHHH
Q 029094 54 DYNDAISRARRNASYFRVN 72 (199)
Q Consensus 54 s~~~~~~Ri~~Nl~yF~~N 72 (199)
+++|..+-|..|..||+.+
T Consensus 18 tL~eIy~~i~~~fpy~r~~ 36 (75)
T d1kq8a_ 18 TLAEINEYLMGKFPFFRGS 36 (75)
T ss_dssp CHHHHHHHHHHHCTTGGGT
T ss_pred cHHHHHHHHHHhCcccccC
Confidence 4566666666666666554
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.75 E-value=26 Score=19.03 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.6
Q ss_pred CCCccC
Q 029094 189 QPVRLT 194 (199)
Q Consensus 189 ~~~~~~ 194 (199)
+|.||+
T Consensus 27 DP~RnP 32 (35)
T d2axti1 27 DPARNP 32 (35)
T ss_dssp CTTCSS
T ss_pred CCCCCC
Confidence 344444
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.36 E-value=3.2e+02 Score=20.36 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEeccccchHHHHHHHHHHHHHHHHH
Q 029094 88 HPVSMIVFIVVFVLWLFFYFARDDPVVVFNQTLDDKFVLGCLTLVTVLALI 138 (199)
Q Consensus 88 ~P~~Li~l~~~~~~~~~i~~~~~~p~~i~g~~~~~~~v~~~l~~vs~~ll~ 138 (199)
+....+.++++.++..|+|.. .|.++-|.++-+++...++++|
T Consensus 27 ~~~~a~~~~~~~~~~~~vy~s--------~r~~p~kyi~PG~~~l~~Fvi~ 69 (248)
T d2r6gf1 27 EYLFAITTLILSSAGLYIFAN--------RKAYAWRYVYPGMAGMGLFVLF 69 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHSS--------SCCTTHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHheEEEEEc--------cCccceehhhhHHHHHHHHHHH
Confidence 333333344444444455543 2345556666666666655554
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=9.34 E-value=1.4e+02 Score=15.38 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHH
Q 029094 120 LDDKFVLGCLTLVTVLAL 137 (199)
Q Consensus 120 ~~~~~v~~~l~~vs~~ll 137 (199)
+++.|+++++++.-++-+
T Consensus 3 lsdtqv~valvial~pg~ 20 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAV 20 (31)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 577888887777666544
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.20 E-value=1.9e+02 Score=16.25 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhcccCCCCCccccc
Q 029094 149 GLIVGVVLVGLHASFRATDDLFLDEES 175 (199)
Q Consensus 149 ~l~~s~~vvl~HA~~R~~~~~~~de~~ 175 (199)
+++...+..+.|=.---||.. ||||
T Consensus 19 ~~~~~~~~~~fHYv~vGPn~v--~ee~ 43 (45)
T d1kqfb2 19 GFIATFAGLIFHYIGIGPNKE--VDDD 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHCCBCS--CSST
T ss_pred HHHHHHHHHHHhhheeCCCcc--cccc
Confidence 555666777788777777763 4444
No 8
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.55 E-value=77 Score=20.07 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHhHHhHHHHH
Q 029094 54 DYNDAISRARRNASYFRVNY 73 (199)
Q Consensus 54 s~~~~~~Ri~~Nl~yF~~NY 73 (199)
+++|..+-+..|..||+.++
T Consensus 24 tL~eIy~~i~~~fpyyr~~~ 43 (82)
T d2a07f1 24 TLNEIYSWFTRTFAYFRRNA 43 (82)
T ss_dssp CHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHhCcccccCC
Confidence 45556666666666665544
No 9
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.51 E-value=44 Score=21.74 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=23.4
Q ss_pred CChhhhhCCCCCCCCCChHHHHHHHHHhH
Q 029094 38 RPWREFFNTSALSLPADYNDAISRARRNA 66 (199)
Q Consensus 38 RPw~eF~d~~~fs~P~s~~~~~~Ri~~Nl 66 (199)
-|..|-|....|+. ++..++..++++||
T Consensus 56 D~LG~l~gv~sFsV-k~~r~l~~ml~rnL 83 (85)
T d2axia1 56 DLLGDLFGVPSFSV-KEHRKIYTMIYRNL 83 (85)
T ss_dssp SHHHHHHSSSEEET-TCHHHHHHHHHTTE
T ss_pred chHHhhcCCCceee-cCcHHHHHHHHhcc
Confidence 45788888888888 57889999999996
No 10
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=3.3e+02 Score=18.30 Aligned_cols=43 Identities=14% Similarity=-0.006 Sum_probs=27.2
Q ss_pred CCCCCC-hHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029094 49 LSLPAD-YNDAISRARRNASYFRVNYAVVMLFILFLSLLWHPVS 91 (199)
Q Consensus 49 fs~P~s-~~~~~~Ri~~Nl~yF~~NY~~i~~~~~~i~ll~~P~~ 91 (199)
.+.|.. -++-.+|..+--.-+-.|+-+....+.+..+..+|..
T Consensus 39 v~~p~~~g~~~f~ra~RaH~N~~E~~p~~L~~l~~~~l~~~~~~ 82 (139)
T d2q7ra1 39 GRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVP 82 (139)
T ss_dssp CSSCCSCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccCHHH
Confidence 344532 2445667766667777777776666666666667864
Done!