Query 029095
Match_columns 199
No_of_seqs 109 out of 1096
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 6.6E-54 1.4E-58 368.0 17.1 172 1-173 2-173 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 6.5E-54 1.4E-58 368.3 16.9 172 1-173 1-173 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 3.4E-53 7.3E-58 369.5 17.3 181 5-189 3-184 (289)
4 PLN03030 cationic peroxidase; 100.0 5.4E-53 1.2E-57 372.9 11.2 168 2-184 31-208 (324)
5 cd00693 secretory_peroxidase H 100.0 9.4E-52 2E-56 362.9 12.6 168 2-184 8-188 (298)
6 cd00691 ascorbate_peroxidase A 100.0 3.3E-50 7.2E-55 346.0 16.6 157 9-173 13-172 (253)
7 PF00141 peroxidase: Peroxidas 100.0 9.3E-49 2E-53 332.9 9.4 153 12-178 1-161 (230)
8 cd00314 plant_peroxidase_like 100.0 7.2E-44 1.6E-48 305.9 14.8 172 11-189 2-186 (255)
9 cd00692 ligninase Ligninase an 100.0 2.1E-42 4.5E-47 306.4 15.7 167 20-189 21-199 (328)
10 cd08201 plant_peroxidase_like_ 100.0 1.2E-42 2.6E-47 299.0 8.9 143 28-176 37-182 (264)
11 cd00649 catalase_peroxidase_1 100.0 6.1E-42 1.3E-46 308.8 12.1 162 16-178 44-257 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 1.6E-39 3.5E-44 309.2 10.4 161 16-177 54-265 (716)
13 PRK15061 catalase/hydroperoxid 100.0 1E-37 2.2E-42 295.9 11.7 162 15-177 55-269 (726)
14 cd08200 catalase_peroxidase_2 100.0 9.9E-34 2.1E-38 246.7 14.4 155 14-172 14-201 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 4.8E-30 1E-34 244.6 15.3 156 13-172 431-614 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.1E-29 1.3E-33 236.3 15.0 155 14-172 439-626 (726)
17 COG0376 KatG Catalase (peroxid 99.9 4E-27 8.6E-32 216.5 9.3 157 15-172 68-276 (730)
18 COG0376 KatG Catalase (peroxid 99.3 4.4E-12 9.5E-17 117.9 7.6 151 13-167 448-625 (730)
19 PRK12346 transaldolase A; Prov 34.1 41 0.00089 30.3 3.1 85 77-164 138-240 (316)
20 KOG0400 40S ribosomal protein 33.3 16 0.00035 29.0 0.3 41 130-171 21-66 (151)
21 PRK12309 transaldolase/EF-hand 31.4 51 0.0011 30.5 3.3 86 76-164 142-245 (391)
22 PTZ00411 transaldolase-like pr 31.4 45 0.00098 30.2 2.9 58 108-166 180-255 (333)
23 cd00957 Transaldolase_TalAB Tr 29.6 54 0.0012 29.4 3.1 87 77-166 137-243 (313)
24 PRK10947 global DNA-binding tr 27.3 1.1E+02 0.0023 24.2 4.1 24 137-161 57-80 (135)
25 cd02642 R3H_encore_like R3H do 27.1 81 0.0018 21.1 3.0 34 14-47 3-43 (63)
26 COG1913 Predicted Zn-dependent 25.3 29 0.00063 28.8 0.5 19 154-173 126-144 (181)
27 PF09349 OHCU_decarbox: OHCU d 24.9 78 0.0017 25.3 3.0 36 133-168 31-68 (159)
28 PRK05269 transaldolase B; Prov 24.8 44 0.00096 30.0 1.6 58 107-165 169-242 (318)
29 PF00043 GST_C: Glutathione S- 24.1 1.8E+02 0.004 19.7 4.5 38 72-109 31-73 (95)
30 TIGR01911 HesB_rel_seleno HesB 22.6 26 0.00057 25.5 -0.2 32 17-58 8-39 (92)
31 cd00439 Transaldolase Transald 22.2 34 0.00074 29.6 0.4 86 76-164 127-230 (252)
32 TIGR00874 talAB transaldolase. 21.5 71 0.0015 28.8 2.3 57 107-164 167-239 (317)
33 PRK13859 type IV secretion sys 20.4 69 0.0015 21.4 1.4 29 96-124 9-40 (55)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=6.6e-54 Score=368.05 Aligned_cols=172 Identities=73% Similarity=1.223 Sum_probs=167.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccchHHhhccCcCchHHHHHH
Q 029095 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (199)
Q Consensus 1 ~~~~cP~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (199)
|.+.||.+.+.++++++.+|++|.+++.++.++|.+|||+||||+|||...+.||+||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHhhCCCCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhh
Q 029095 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (199)
Q Consensus 81 i~~iK~~~p~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLs 160 (199)
|++||++++.|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhhhhcccccCc
Q 029095 161 GGHTLVSAKLEGA 173 (199)
Q Consensus 161 GaHtiG~~~~~~f 173 (199)
||||||++||..+
T Consensus 161 GaHTiG~ah~~r~ 173 (251)
T PLN02879 161 GGHTLGRCHKERS 173 (251)
T ss_pred ccccccccccccc
Confidence 9999999999754
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=6.5e-54 Score=368.26 Aligned_cols=172 Identities=76% Similarity=1.258 Sum_probs=166.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccchHHhhccCcCchHHHHHH
Q 029095 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (199)
Q Consensus 1 ~~~~cP~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~ 80 (199)
|++.||.+.+.+++++++++++|++++.|+.++|.+|||+||||++||.....|||||||++.+|+++++|.+|++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHh-cCCChhhHHHh
Q 029095 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (199)
Q Consensus 81 i~~iK~~~p~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~-~Gl~~~elVaL 159 (199)
|++||+++++|||||||+|||++||+++|||.|+|++||+|+..+.++++||.|+.+++++++.| ++ +||+++|||||
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999998889999999999999999 75 69999999999
Q ss_pred hhhhhhhcccccCc
Q 029095 160 SGGHTLVSAKLEGA 173 (199)
Q Consensus 160 sGaHtiG~~~~~~f 173 (199)
+||||||.+||...
T Consensus 160 sGaHTiG~~hc~r~ 173 (250)
T PLN02364 160 SGAHTLGRCHKDRS 173 (250)
T ss_pred ecceeeccccCCCC
Confidence 99999999999554
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.4e-53 Score=369.48 Aligned_cols=181 Identities=62% Similarity=1.002 Sum_probs=168.1
Q ss_pred CCChhHHHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccchHHhhccCcCchHHHHHHHHHH
Q 029095 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (199)
Q Consensus 5 cP~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (199)
-|.++..|.++|+++|++|+++++|+.++|.+|||+||||++||.+.+.|||||||++.+|+++++|.+|++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 47888899999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhhCCCCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhhhhh
Q 029095 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (199)
Q Consensus 85 K~~~p~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLsGaHt 164 (199)
|+++|+|||||||+|||++||+++|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+++|||||+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999888889999999999999999 999999999999999999
Q ss_pred hhcccccCcCCCCCCC-CCCCCCccc
Q 029095 165 LVSAKLEGATRRGLDL-RDHGPATLS 189 (199)
Q Consensus 165 iG~~~~~~f~~r~~~~-~~~~p~~~~ 189 (199)
||.+||... +|+. .+.+|..||
T Consensus 162 iG~ahc~r~---g~~g~~~~Tp~~FD 184 (289)
T PLN02608 162 LGRAHPERS---GFDGPWTKEPLKFD 184 (289)
T ss_pred cccccccCC---CCCCCCCCCCCccC
Confidence 999999743 2321 234555554
No 4
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=5.4e-53 Score=372.94 Aligned_cols=168 Identities=27% Similarity=0.372 Sum_probs=157.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccch---HHhhccCcCchHHHH
Q 029095 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAV 78 (199)
Q Consensus 2 ~~~cP~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~~---~E~~~~~N~gl~~~~ 78 (199)
.++||++|+||+++|+++ +.+|+.+++++|||+|||||+ +||||||+++ .|+++++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 479999999999999999 999999999999999999997 8999999874 69999999988 799
Q ss_pred HHHHHHHhhC----C-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCC--CCCCCCCCCCCChHHHHHHHHHhcCC
Q 029095 79 RLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGNDHLRQVFGAQMGL 151 (199)
Q Consensus 79 ~~i~~iK~~~----p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~--~~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (199)
++|+.||+++ | +|||||||++||++||.++|||.|+|++||+|+..+ ...++||.|+.+++++++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 9999999975 6 899999999999999999999999999999999876 33458999999999999999 99999
Q ss_pred ChhhHHHhhhhhhhhcccccCcCCCCCCCCCCC
Q 029095 152 SDKDIVALSGGHTLVSAKLEGATRRGLDLRDHG 184 (199)
Q Consensus 152 ~~~elVaLsGaHtiG~~~~~~f~~r~~~~~~~~ 184 (199)
+.+|||+|+||||||++||.+|.+|+||+++.+
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~ 208 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTG 208 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCC
Confidence 999999999999999999999999999987653
No 5
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=9.4e-52 Score=362.91 Aligned_cols=168 Identities=27% Similarity=0.399 Sum_probs=156.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccc------hHHhhccCcCchH
Q 029095 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (199)
Q Consensus 2 ~~~cP~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~------~~E~~~~~N~gl~ 75 (199)
.++||++|+||+++|+++ +..|+.++|++|||+|||||+ +||||||++ .+|+++++|.++
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999998 999999999999999999997 899999986 369999999998
Q ss_pred HHHHHHHHHHhhC----C-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHh
Q 029095 76 IAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQ 148 (199)
Q Consensus 76 ~~~~~i~~iK~~~----p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~--~~~~lP~p~~~~~~l~~~F~~~ 148 (199)
++|++|++||+++ | +|||||||+||+++||+.+|||.|+|++||+|+..+. +.+.||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 7999999999975 6 8999999999999999999999999999999998663 3468999999999999999 99
Q ss_pred cCCChhhHHHhhhhhhhhcccccCcCCCCCCCCCCC
Q 029095 149 MGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHG 184 (199)
Q Consensus 149 ~Gl~~~elVaLsGaHtiG~~~~~~f~~r~~~~~~~~ 184 (199)
+||+++|||||+||||||++||..|.+|+|++++++
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~ 188 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTG 188 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccCCCCCC
Confidence 999999999999999999999999999999986644
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3.3e-50 Score=346.02 Aligned_cols=157 Identities=57% Similarity=1.000 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccchHHhhccCcCchHHHHHHHHHHHhhC
Q 029095 9 SEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF 88 (199)
Q Consensus 9 ~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (199)
..+|+++|+++ +.++.+++.+|||+|||||+||++.+.||+||++++.+|+++++|.+|++++++|++||+++
T Consensus 13 ~~~V~~~v~~~-------~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 13 LEAARNDIAKL-------IDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHH-------HHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc
Confidence 34555555544 44999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhhhhhh
Q 029095 89 PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165 (199)
Q Consensus 89 p~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLsGaHti 165 (199)
|+|||||||++|+++||+.+|||.|+|++||+|+..+. ++++||.|+.++++++++| +++||+++|||||+|||||
T Consensus 86 ~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 86 PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhccccee
Confidence 99999999999999999999999999999999999885 6788999999999999999 9999999999999999999
Q ss_pred hcccccCc
Q 029095 166 VSAKLEGA 173 (199)
Q Consensus 166 G~~~~~~f 173 (199)
|.+||..+
T Consensus 165 G~a~c~~~ 172 (253)
T cd00691 165 GRCHKERS 172 (253)
T ss_pred ecccccCC
Confidence 99999763
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=9.3e-49 Score=332.88 Aligned_cols=153 Identities=36% Similarity=0.576 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCcccc-hHHhhccCcCchHHHHHHHHHHHhhC--
Q 029095 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF-- 88 (199)
Q Consensus 12 v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~-~~E~~~~~N~gl~~~~~~i~~iK~~~-- 88 (199)
||++|+++ +..++.++|++|||+||||++| |||||||++ .+|+++++|.+|.+++++|++||+++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 56777766 7789999999999999999988 999999975 88999999999988999999999987
Q ss_pred --C-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHHHhcCCChhhHHHhhhhh
Q 029095 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (199)
Q Consensus 89 --p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLsGaH 163 (199)
| +|||||||++|+++||+.+|||.|+|++||+|+..+.+.+ +||.|+.+++++++.| +++||+++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 4 6999999999999999999999999999999999996644 5999999999999999 99999999999999999
Q ss_pred hhhcccccCcCCCCC
Q 029095 164 TLVSAKLEGATRRGL 178 (199)
Q Consensus 164 tiG~~~~~~f~~r~~ 178 (199)
|||++||..|. |+|
T Consensus 148 TiG~~~c~~f~-rl~ 161 (230)
T PF00141_consen 148 TIGRAHCSSFS-RLY 161 (230)
T ss_dssp GSTEESGGCTG-GTS
T ss_pred ccccceecccc-ccc
Confidence 99999999999 999
No 8
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=7.2e-44 Score=305.87 Aligned_cols=172 Identities=42% Similarity=0.622 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccC-CCCCCCCcccchHHhhccCcCchHHHHHHHHHHHhhCC
Q 029095 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89 (199)
Q Consensus 11 ~v~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~-~~gG~dgsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~p 89 (199)
.|+..|++. +.+++.+++++|||+||||++|+.+. ..|||||||++.+|+++|+|.+|.+++++|++||++++
T Consensus 2 ~v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcC
Confidence 355566555 56689999999999999999999886 78999999999999999999999899999999999995
Q ss_pred ---CCcHHHHHHHhhhhhhhhc--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHh
Q 029095 90 ---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (199)
Q Consensus 90 ---~VS~ADli~lAa~~av~~~--GGP~~~v~~GR~D~~-----~~~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaL 159 (199)
+|||||||++|+++|++.+ |||.|+|++||+|+. .+.|.+++|.+..++.++++.| +++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhh
Confidence 8999999999999999999 999999999999998 5677888999999999999999 8999999999999
Q ss_pred h-hhhhh-hcccccCcCCCCCCCCCCCCCccc
Q 029095 160 S-GGHTL-VSAKLEGATRRGLDLRDHGPATLS 189 (199)
Q Consensus 160 s-GaHti-G~~~~~~f~~r~~~~~~~~p~~~~ 189 (199)
+ |+||| |++||..+..|+...-+.+|..|+
T Consensus 155 ~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fD 186 (255)
T cd00314 155 SAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFD 186 (255)
T ss_pred ccCCeeccCcccCCCCCcccCCCCCCCCCccc
Confidence 9 99999 999999999987555566776665
No 9
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.1e-42 Score=306.40 Aligned_cols=167 Identities=30% Similarity=0.522 Sum_probs=141.5
Q ss_pred HHHHhh-HhhccCchh---hHHHHHhhhcccccc-----cCCCCCCCCcccch--HHhhccCcCchHHHHHHHHHHHhhC
Q 029095 20 KRKLRG-FIAEKNCAP---LMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEPFKEQF 88 (199)
Q Consensus 20 ~~~l~~-~~~~~~~a~---~~lRL~FHDc~~~D~-----s~~~gG~dgsi~~~--~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (199)
+++|++ +.++..|++ .+|||+||||++||. ..+.|||||||++. .|+++++|.||+..++.|+++++++
T Consensus 21 ~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~e~~ 100 (328)
T cd00692 21 LDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFHQKH 100 (328)
T ss_pred HHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 445555 445666655 599999999999994 56789999999864 5999999999998888888888888
Q ss_pred CCCcHHHHHHHhhhhhhhh-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhhhhhhhc
Q 029095 89 PTISYADLYQLAGVVGVEV-TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVS 167 (199)
Q Consensus 89 p~VS~ADli~lAa~~av~~-~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLsGaHtiG~ 167 (199)
+ |||||||+||+++||+. +|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+.+|||||+||||||+
T Consensus 101 c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~ 178 (328)
T cd00692 101 N-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDELVALLAAHSVAA 178 (328)
T ss_pred C-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHhhhcccccccc
Confidence 6 99999999999999994 69999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccCcCCCCCCCCCCCCCccc
Q 029095 168 AKLEGATRRGLDLRDHGPATLS 189 (199)
Q Consensus 168 ~~~~~f~~r~~~~~~~~p~~~~ 189 (199)
+|..+.+-.+.+ -|++|..|+
T Consensus 179 a~~~Dps~~g~p-~D~TP~~FD 199 (328)
T cd00692 179 QDFVDPSIAGTP-FDSTPGVFD 199 (328)
T ss_pred cCCCCCCCCCCC-CCCCcchhc
Confidence 996554332222 234565554
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.2e-42 Score=298.97 Aligned_cols=143 Identities=30% Similarity=0.467 Sum_probs=129.1
Q ss_pred hccCchhhHHHHHhhhcccccccCCCCCCCCcccchHHhhccCcCchH--HHHHHHHHHHhhCCCCcHHHHHHHhhhhhh
Q 029095 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (199)
Q Consensus 28 ~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgsi~~~~E~~~~~N~gl~--~~~~~i~~iK~~~p~VS~ADli~lAa~~av 105 (199)
.++.+++.||||+||||++||...+.|||||||++ |..++||.|+. ..++.++.|+. +.|||||||+||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998 67788998875 34555555543 48999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCChhhHHHhhh-hhhhhcccccCcCCC
Q 029095 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLVSAKLEGATRR 176 (199)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLsG-aHtiG~~~~~~f~~r 176 (199)
+.+|||.|+|++||+|+..+.+.+ ||.|+.+++++++.| +++||+++|||+|+| |||||.+||..|...
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~ 182 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEI 182 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhh
Confidence 999999999999999999998876 999999999999999 999999999999995 999999999998544
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.1e-42 Score=308.81 Aligned_cols=162 Identities=38% Similarity=0.615 Sum_probs=151.7
Q ss_pred HHHHHHHHhhHhhcc---------CchhhHHHHHhhhcccccccCCCCCCC-CcccchHHhhccCcCchHHHHHHHHHHH
Q 029095 16 VEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFK 85 (199)
Q Consensus 16 v~~~~~~l~~~~~~~---------~~a~~~lRL~FHDc~~~D~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~iK 85 (199)
++++|++|++++++. .++|.+|||+|||++|||.+++.||+| |+|+|.+|.+++.|.+|++++++|++||
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pik 123 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPIK 123 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHHH
Confidence 788899999999875 799999999999999999999999998 7999999999999999999999999999
Q ss_pred hhCC-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC--------------------------------------
Q 029095 86 EQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-------------------------------------- 126 (199)
Q Consensus 86 ~~~p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~-------------------------------------- 126 (199)
++|| .||+||||+||+.+||+.+|||.++|.+||.|...+.
T Consensus 124 ~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv~ 203 (409)
T cd00649 124 QKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYVN 203 (409)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhccccccC
Confidence 9997 7999999999999999999999999999999996431
Q ss_pred CCC--CCCCCCCChHHHHHHHHHhcCCChhhHHHh-hhhhhhhcccccCcCCCCC
Q 029095 127 QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKLEGATRRGL 178 (199)
Q Consensus 127 ~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~elVaL-sGaHtiG~~~~~~f~~r~~ 178 (199)
|++ .||.|..++.+|++.| .+|||+.+||||| +||||||++||..|..|++
T Consensus 204 Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg 257 (409)
T cd00649 204 PEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVG 257 (409)
T ss_pred CCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCC
Confidence 344 6999999999999999 9999999999999 5999999999999988874
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.6e-39 Score=309.23 Aligned_cols=161 Identities=37% Similarity=0.588 Sum_probs=149.3
Q ss_pred HHHHHHHHhhHhhcc---------CchhhHHHHHhhhcccccccCCCCCCC-CcccchHHhhccCcCchHHHHHHHHHHH
Q 029095 16 VEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFK 85 (199)
Q Consensus 16 v~~~~~~l~~~~~~~---------~~a~~~lRL~FHDc~~~D~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~iK 85 (199)
++++|++|++++++. .++|.+|||+||+++|||.+++.||++ |+|+|.+|.+|+.|.+|++++++|++||
T Consensus 54 ~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk 133 (716)
T TIGR00198 54 LAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIK 133 (716)
T ss_pred HHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHHH
Confidence 677899999999875 799999999999999999999999996 7999999999999999999999999999
Q ss_pred hhCC-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC-------------------------------------C
Q 029095 86 EQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-------------------------------------Q 127 (199)
Q Consensus 86 ~~~p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~-------------------------------------~ 127 (199)
++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+. +
T Consensus 134 ~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnp 213 (716)
T TIGR00198 134 KKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNP 213 (716)
T ss_pred HHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccCc
Confidence 9998 8999999999999999999999999999999994321 2
Q ss_pred CC--CCCCCCCChHHHHHHHHHhcCCChhhHHHhh-hhhhhhcccccCcCCCC
Q 029095 128 EG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKLEGATRRG 177 (199)
Q Consensus 128 ~~--~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLs-GaHtiG~~~~~~f~~r~ 177 (199)
++ .+|.|..++.+|++.| .+||||.+|||||+ ||||||.+||..|..|+
T Consensus 214 eg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl 265 (716)
T TIGR00198 214 EGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELI 265 (716)
T ss_pred ccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccC
Confidence 33 6899999999999999 99999999999995 99999999999998765
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1e-37 Score=295.88 Aligned_cols=162 Identities=38% Similarity=0.619 Sum_probs=149.0
Q ss_pred HHHHHHHHHhhHhhcc---------CchhhHHHHHhhhcccccccCCCCCCC-CcccchHHhhccCcCchHHHHHHHHHH
Q 029095 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (199)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRL~FHDc~~~D~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (199)
.++++|++|++++++. .++|.+|||+||+++|||.+++.||++ |+|||.+|.+|+.|.+|++++++|++|
T Consensus 55 d~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~pi 134 (726)
T PRK15061 55 DLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWPI 134 (726)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHHH
Confidence 4788899999999875 799999999999999999999999997 799999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCC-------------------------------------
Q 029095 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (199)
Q Consensus 85 K~~~p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~------------------------------------- 126 (199)
|++|| .||+||||+||+.+||+.+|||.++|.+||.|...+.
T Consensus 135 k~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgliy 214 (726)
T PRK15061 135 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLIY 214 (726)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhcccee
Confidence 99997 8999999999999999999999999999999986432
Q ss_pred --CCC--CCCCCCCChHHHHHHHHHhcCCChhhHHHhh-hhhhhhcccccCcCCCC
Q 029095 127 --QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKLEGATRRG 177 (199)
Q Consensus 127 --~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLs-GaHtiG~~~~~~f~~r~ 177 (199)
|++ .+|+|..++.++++.| .+|||+++|||||+ ||||||++||..|..|+
T Consensus 215 vnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl 269 (726)
T PRK15061 215 VNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHV 269 (726)
T ss_pred cCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCccccc
Confidence 111 2799999999999999 99999999999995 99999999999987765
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=9.9e-34 Score=246.71 Aligned_cols=155 Identities=28% Similarity=0.413 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCc-ccchHHhhccCcCc--hHHHHHHHHHHHhhCC-
Q 029095 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP- 89 (199)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgs-i~~~~E~~~~~N~g--l~~~~~~i~~iK~~~p- 89 (199)
+.|...|++ ++...-+++.+|||+||++.|||.+++.||+||. |+|.+|++|+.|.+ |.+++.+|++||+++|
T Consensus 14 ~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 14 ADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 455555665 4566678999999999999999999999999985 99999999999999 9999999999999997
Q ss_pred ------CCcHHHHHHHhhhhhhhhcCC-----CCCCCCCCCCCCCCCC--CC---CCCCCCCC------------ChHHH
Q 029095 90 ------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPP--QE---GRLPDAKQ------------GNDHL 141 (199)
Q Consensus 90 ------~VS~ADli~lAa~~av~~~GG-----P~~~v~~GR~D~~~~~--~~---~~lP~p~~------------~~~~l 141 (199)
.||+||+|+||+.+|||.+|| |.++|.+||.|+..+. ++ .++|.+.. ....|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 799999999999999999999 9999999999998752 22 24453321 33679
Q ss_pred HHHHHHhcCCChhhHHHhhhhh-hhhcccccC
Q 029095 142 RQVFGAQMGLSDKDIVALSGGH-TLVSAKLEG 172 (199)
Q Consensus 142 ~~~F~~~~Gl~~~elVaLsGaH-tiG~~~~~~ 172 (199)
++.| .+|||+++|||||+||| ++|.+|..+
T Consensus 171 rd~f-~rlglsd~EmvaL~Gg~r~lG~~~~~s 201 (297)
T cd08200 171 VDKA-QLLTLTAPEMTVLVGGLRVLGANYGGS 201 (297)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCCCC
Confidence 9999 99999999999999998 799988643
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=4.8e-30 Score=244.62 Aligned_cols=156 Identities=26% Similarity=0.411 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCc-ccchHHhhccCc--CchHHHHHHHHHHHhhCC
Q 029095 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFP 89 (199)
Q Consensus 13 ~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgs-i~~~~E~~~~~N--~gl~~~~~~i~~iK~~~p 89 (199)
++.|...|++ ++...-.++.+||++||++.|||.+++.||+||. |+|.+|++|+.| .+|.+++++|++||+++|
T Consensus 431 ~~di~~lk~~---i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~ 507 (716)
T TIGR00198 431 EGDIKELKQQ---ILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFA 507 (716)
T ss_pred HHHHHHHHHH---HHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 5566555554 3566778899999999999999999999999995 999999999999 899999999999999999
Q ss_pred --CCcHHHHHHHhhhhhhhhc---CCC--CCCCCCCCCCCCCC--CCCCCCCC---------------CCCChHHHHHHH
Q 029095 90 --TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEP--PQEGRLPD---------------AKQGNDHLRQVF 145 (199)
Q Consensus 90 --~VS~ADli~lAa~~av~~~---GGP--~~~v~~GR~D~~~~--~~~~~lP~---------------p~~~~~~l~~~F 145 (199)
.||+||+|+||+.+|||.+ ||| .++|.+||.|+... ++++..|. .......|+++|
T Consensus 508 ~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a 587 (716)
T TIGR00198 508 KGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKA 587 (716)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHH
Confidence 8999999999999999998 898 57999999999765 23333221 112345688999
Q ss_pred HHhcCCChhhHHHhhhhh-hhhcccccC
Q 029095 146 GAQMGLSDKDIVALSGGH-TLVSAKLEG 172 (199)
Q Consensus 146 ~~~~Gl~~~elVaLsGaH-tiG~~~~~~ 172 (199)
.++||+++|||||+||| ++|.+|..+
T Consensus 588 -~~lglt~~EmvaL~Gg~r~lG~~~~~s 614 (716)
T TIGR00198 588 -QLLTLTAPEMTVLIGGMRVLGANHGGS 614 (716)
T ss_pred -HhCCCChHHHHheecchhhccccCCCC
Confidence 99999999999999995 999999854
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.96 E-value=6.1e-29 Score=236.28 Aligned_cols=155 Identities=28% Similarity=0.429 Sum_probs=132.4
Q ss_pred HHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCCc-ccchHHhhccCcC--chHHHHHHHHHHHhhC--
Q 029095 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-- 88 (199)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dgs-i~~~~E~~~~~N~--gl~~~~~~i~~iK~~~-- 88 (199)
+.|...|.+| +...-..+.+||++||++.|||.+++.||+||. |||.+|++|+.|. +|.+++++|++||+++
T Consensus 439 ~di~~lk~~i---~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 439 ADIAALKAKI---LASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHHH---HhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 4455555553 555667899999999999999999999999985 9999999999999 9999999999999998
Q ss_pred -----CCCcHHHHHHHhhhhhhhhc---CC--CCCCCCCCCCCCCCCC--CC---CCCCCCC------------CChHHH
Q 029095 89 -----PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPP--QE---GRLPDAK------------QGNDHL 141 (199)
Q Consensus 89 -----p~VS~ADli~lAa~~av~~~---GG--P~~~v~~GR~D~~~~~--~~---~~lP~p~------------~~~~~l 141 (199)
|.||+||+|+||+.+|||.+ || |.++|.+||.|+.... ++ .++|... .....|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 68999999999999999998 57 9999999999997752 22 2556532 123679
Q ss_pred HHHHHHhcCCChhhHHHhhhhh-hhhcccccC
Q 029095 142 RQVFGAQMGLSDKDIVALSGGH-TLVSAKLEG 172 (199)
Q Consensus 142 ~~~F~~~~Gl~~~elVaLsGaH-tiG~~~~~~ 172 (199)
+++| .++||+++|||||+||| ++|.+|..+
T Consensus 596 ~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~~~S 626 (726)
T PRK15061 596 VDKA-QLLTLTAPEMTVLVGGLRVLGANYGGS 626 (726)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCCCC
Confidence 9999 99999999999999997 899988653
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4e-27 Score=216.49 Aligned_cols=157 Identities=39% Similarity=0.636 Sum_probs=143.7
Q ss_pred HHHHHHHHHhhHhhcc---------CchhhHHHHHhhhcccccccCCCCCCC-CcccchHHhhccCcCchHHHHHHHHHH
Q 029095 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (199)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRL~FHDc~~~D~s~~~gG~d-gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (199)
.+.+.|++|++++.+. ..++.+|||+||-++||+...+.||.. |..||.++.+||.|.+|++++++|.+|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 3677899999999875 579999999999999999999999988 699999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHhhhhhhhhcCCCCCCCCCCCCCCCCCCC------------------------------------
Q 029095 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (199)
Q Consensus 85 K~~~p-~VS~ADli~lAa~~av~~~GGP~~~v~~GR~D~~~~~~------------------------------------ 127 (199)
|.+|+ .||+||||+|++.+|++.+|++.+.|..||.|...+..
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYV 227 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYV 227 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEe
Confidence 99998 99999999999999999999999999999999877632
Q ss_pred --C--CCCCCCCCChHHHHHHHHHhcCCChhhHHHhh-hhhhhhcccccC
Q 029095 128 --E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKLEG 172 (199)
Q Consensus 128 --~--~~lP~p~~~~~~l~~~F~~~~Gl~~~elVaLs-GaHtiG~~~~~~ 172 (199)
+ +..|+|-.+..+++..| ++|+++++|.|||+ ||||+|.+|...
T Consensus 228 NPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag 276 (730)
T COG0376 228 NPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAG 276 (730)
T ss_pred CCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCC
Confidence 2 24688888899999999 99999999999997 699999999987
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.30 E-value=4.4e-12 Score=117.85 Aligned_cols=151 Identities=29% Similarity=0.447 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCC-cccchHHhhccCcC--chHHHHHHHHHHHhhCC
Q 029095 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP 89 (199)
Q Consensus 13 ~~~v~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dg-si~~~~E~~~~~N~--gl~~~~~~i~~iK~~~p 89 (199)
.+.|...|.+ ++...=....++-.+|-.+.||..|.+.||.|| .|++.|.++|+.|. -|.+++.+++.|++.+.
T Consensus 448 d~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fn 524 (730)
T COG0376 448 DADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFN 524 (730)
T ss_pred hHHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445555554 355555677899999999999999999999997 99999999999995 56789999999999997
Q ss_pred -CCcHHHHHHHhhhhhhhhc---CCC--CCCCCCCCCCCCCC--CCCC--CC-CC-----------CCCC-hHHHHHHHH
Q 029095 90 -TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEP--PQEG--RL-PD-----------AKQG-NDHLRQVFG 146 (199)
Q Consensus 90 -~VS~ADli~lAa~~av~~~---GGP--~~~v~~GR~D~~~~--~~~~--~l-P~-----------p~~~-~~~l~~~F~ 146 (199)
.||.||+|+|++..+|+.+ +|- .++|.+||.|+... +.+. .| |. ...+ -.-|+++-
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA- 603 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA- 603 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH-
Confidence 7999999999999999974 443 46889999999764 1110 00 11 1112 23477887
Q ss_pred HhcCCChhhHHHhhhhh-hhhc
Q 029095 147 AQMGLSDKDIVALSGGH-TLVS 167 (199)
Q Consensus 147 ~~~Gl~~~elVaLsGaH-tiG~ 167 (199)
+.++|+..||++|.||- -+|.
T Consensus 604 qlL~LtapemtVLiGGlRvLg~ 625 (730)
T COG0376 604 QLLTLTAPEMTVLIGGLRVLGA 625 (730)
T ss_pred HHhccCCccceEEEcceEeecc
Confidence 88999999999999875 4443
No 19
>PRK12346 transaldolase A; Provisional
Probab=34.15 E-value=41 Score=30.28 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--hcCCCCCCCCCCCCCCCCCC--CCCCCCC-CC---CChHHHHHHHHHh
Q 029095 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPP--QEGRLPD-AK---QGNDHLRQVFGAQ 148 (199)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADli~lAa~~av~--~~GGP~~~v~~GR~D~~~~~--~~~~lP~-p~---~~~~~l~~~F~~~ 148 (199)
|++.++.++++ .|+|--.+.|....++. .+|...+..+.||-|-..-. +...++. .. ..+.++.+.| ++
T Consensus 138 Gi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~ 214 (316)
T PRK12346 138 GIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-KQ 214 (316)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-HH
Confidence 44444444433 34443333444433333 36888889999998764321 1111211 11 3567788888 78
Q ss_pred cCCC----------hhhHHHhhhhhh
Q 029095 149 MGLS----------DKDIVALSGGHT 164 (199)
Q Consensus 149 ~Gl~----------~~elVaLsGaHt 164 (199)
.|+. ..|+.+|.|.|.
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~ 240 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDR 240 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCE
Confidence 7764 578889999983
No 20
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=33.26 E-value=16 Score=28.98 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCCCC----CChHHHHHHHHHhcCCChhhH-HHhhhhhhhhccccc
Q 029095 130 RLPDAK----QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLVSAKLE 171 (199)
Q Consensus 130 ~lP~p~----~~~~~l~~~F~~~~Gl~~~el-VaLsGaHtiG~~~~~ 171 (199)
.+|.+. +++.+.+-+| +++||++.++ |.|--+|-||.+...
T Consensus 21 ~~PtWlK~~~ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~r~v 66 (151)
T KOG0400|consen 21 SVPTWLKLTADDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQVRFV 66 (151)
T ss_pred CCcHHHhcCHHHHHHHHHHH-HHcCCChhHceeeeecccCcchhhee
Confidence 355554 3566677788 8999999998 556799988887643
No 21
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=31.45 E-value=51 Score=30.48 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--hcCCCCCCCCCCCCCCCCCCCCC--CCCCCC----CChHHHHHHHHH
Q 029095 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPDAK----QGNDHLRQVFGA 147 (199)
Q Consensus 76 ~~~~~i~~iK~~~p~VS~ADli~lAa~~av~--~~GGP~~~v~~GR~D~~~~~~~~--~lP~p~----~~~~~l~~~F~~ 147 (199)
.|++.+..++++ .|.|--.+.+....|+. .+|...+..+.||.|-..-...+ .+|... ..+.++.+.| +
T Consensus 142 eGi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~ 218 (391)
T PRK12309 142 EGIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-K 218 (391)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-H
Confidence 345555555443 23333333333333333 35778889999998764332111 234333 2467788888 7
Q ss_pred hcCCC----------hhhHHHhhhhhh
Q 029095 148 QMGLS----------DKDIVALSGGHT 164 (199)
Q Consensus 148 ~~Gl~----------~~elVaLsGaHt 164 (199)
+.|+. ..++..|+|.|.
T Consensus 219 ~~~~~T~Im~ASfRn~~~v~~laG~d~ 245 (391)
T PRK12309 219 KFGYKTEVMGASFRNIGEIIELAGCDL 245 (391)
T ss_pred hcCCCcEEEecccCCHHHHHHHHCCCe
Confidence 77764 577888889883
No 22
>PTZ00411 transaldolase-like protein; Provisional
Probab=31.36 E-value=45 Score=30.23 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=37.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCC--CCC-CCCC---CChHHHHHHHHHhcCCC----------hhhHHHhhhhh--hhh
Q 029095 108 TGGPDIPFHPGRDDKAEPPQE--GRL-PDAK---QGNDHLRQVFGAQMGLS----------DKDIVALSGGH--TLV 166 (199)
Q Consensus 108 ~GGP~~~v~~GR~D~~~~~~~--~~l-P~p~---~~~~~l~~~F~~~~Gl~----------~~elVaLsGaH--tiG 166 (199)
+|...+..+.||-+-..-.+. ... +... ..+.++.+.| ++.|+. .+|+..|.|.| ||.
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qi~~laG~D~lTi~ 255 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-KKHGYKTIVMGASFRNTGEILELAGCDKLTIS 255 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-HHcCCCeEEEecccCCHHHHHHHHCCCEEeCC
Confidence 577788999999855432211 112 2122 3466788888 777764 57888899998 444
No 23
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=29.59 E-value=54 Score=29.43 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--hcCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHHh
Q 029095 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQ 148 (199)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADli~lAa~~av~--~~GGP~~~v~~GR~D~~~~~~~~--~lP~----p~~~~~~l~~~F~~~ 148 (199)
|++.++.++++ .|+|--.+.+....++. .+|...+..+.||-|-..-...+ ..+. +-..+.++.+.| ++
T Consensus 137 Gi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~~ 213 (313)
T cd00957 137 GIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-KK 213 (313)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-HH
Confidence 45555555443 33333333333333333 35777789999998754221111 1111 123467888888 78
Q ss_pred cCCC----------hhhHHHhhhhh--hhh
Q 029095 149 MGLS----------DKDIVALSGGH--TLV 166 (199)
Q Consensus 149 ~Gl~----------~~elVaLsGaH--tiG 166 (199)
.|+. ..|+.+|.|.| ||.
T Consensus 214 ~~~~T~vmaASfRn~~~v~~laG~d~~Ti~ 243 (313)
T cd00957 214 FGYKTKVMGASFRNIGQILALAGCDYLTIS 243 (313)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCeEEcC
Confidence 8875 57788888888 544
No 24
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=27.32 E-value=1.1e+02 Score=24.17 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHhcCCChhhHHHhhh
Q 029095 137 GNDHLRQVFGAQMGLSDKDIVALSG 161 (199)
Q Consensus 137 ~~~~l~~~F~~~~Gl~~~elVaLsG 161 (199)
.+.+++... ...||++.|++...+
T Consensus 57 kl~~~r~~m-~~~Gis~~eL~~~~~ 80 (135)
T PRK10947 57 KLQQYREML-IADGIDPNELLNSLA 80 (135)
T ss_pred HHHHHHHHH-HHcCCCHHHHhcccc
Confidence 366888888 899999999965433
No 25
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.09 E-value=81 Score=21.15 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhHhhccC-------chhhHHHHHhhhcccc
Q 029095 14 KAVEKCKRKLRGFIAEKN-------CAPLMLRIAWHSAGTY 47 (199)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~-------~a~~~lRL~FHDc~~~ 47 (199)
.-|.+.+++|.+|+.|+. -..+.-|+.-|++.-|
T Consensus 3 ~~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~~ 43 (63)
T cd02642 3 LFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQY 43 (63)
T ss_pred hHHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHHH
Confidence 345666778888888761 2447899999999853
No 26
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=25.30 E-value=29 Score=28.83 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=14.0
Q ss_pred hhHHHhhhhhhhhcccccCc
Q 029095 154 KDIVALSGGHTLVSAKLEGA 173 (199)
Q Consensus 154 ~elVaLsGaHtiG~~~~~~f 173 (199)
.|++.=+ ||++|..||.+-
T Consensus 126 KEv~HEl-GH~~GL~HC~N~ 144 (181)
T COG1913 126 KEVLHEL-GHLLGLSHCPNP 144 (181)
T ss_pred HHHHHHh-hhhcCcccCCCC
Confidence 4555444 699999999874
No 27
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=24.91 E-value=78 Score=25.26 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHH-hcCCChhhHHHhhhhh-hhhcc
Q 029095 133 DAKQGNDHLRQVFGA-QMGLSDKDIVALSGGH-TLVSA 168 (199)
Q Consensus 133 ~p~~~~~~l~~~F~~-~~Gl~~~elVaLsGaH-tiG~~ 168 (199)
.|+.+..+|++.+.. -.+++.++...++.+| -||.-
T Consensus 31 rPf~s~~~L~~a~~~~~~~~~~~~~~~~l~aHP~lg~~ 68 (159)
T PF09349_consen 31 RPFASVDALIAAADEAVRSLSEEDKLEALRAHPRLGER 68 (159)
T ss_dssp GS-SSHHHHHHHHHHHHHCS-HHHHHHHHHTS--TTSH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHhCcccccc
Confidence 378889999988832 2399999999999999 67653
No 28
>PRK05269 transaldolase B; Provisional
Probab=24.76 E-value=44 Score=30.01 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred hcCCCCCCCCCCCCCCCCCCC---CCCCCC---CCCChHHHHHHHHHhcCCC----------hhhHHHhhhhhhh
Q 029095 107 VTGGPDIPFHPGRDDKAEPPQ---EGRLPD---AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (199)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~~~~---~~~lP~---p~~~~~~l~~~F~~~~Gl~----------~~elVaLsGaHti 165 (199)
.+|...+..+.||-|-..-.. ...-+. .-..+.++.+.| ++.|+. ..++.+|.|.|++
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-KKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-HHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 357778899999987542211 011111 223567888888 788775 5677888898844
No 29
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=24.13 E-value=1.8e+02 Score=19.67 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHhhC-----CCCcHHHHHHHhhhhhhhhcC
Q 029095 72 NGLDIAVRLLEPFKEQF-----PTISYADLYQLAGVVGVEVTG 109 (199)
Q Consensus 72 ~gl~~~~~~i~~iK~~~-----p~VS~ADli~lAa~~av~~~G 109 (199)
..+.+.++.+++.-..- ..+|.||+..+..-.-+...+
T Consensus 31 ~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 34456677777665542 279999998888765555433
No 30
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=22.63 E-value=26 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHHHhhHhhccCchhhHHHHHhhhcccccccCCCCCCCC
Q 029095 17 EKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG 58 (199)
Q Consensus 17 ~~~~~~l~~~~~~~~~a~~~lRL~FHDc~~~D~s~~~gG~dg 58 (199)
++|.++|++++.+..-.+..||+.+ ..|||.|
T Consensus 8 ~~A~~~i~~ll~~~~~~~~~LRi~v----------~~gGCsG 39 (92)
T TIGR01911 8 DDAYEEFKDFLKENDIDNDVIRIHF----------AGMGCMG 39 (92)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEE----------eCCCccC
Confidence 3455666666654433334477765 3478887
No 31
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=22.22 E-value=34 Score=29.57 Aligned_cols=86 Identities=12% Similarity=-0.070 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhCCCCcHHHHHHHhhhhhhh--hcCCCCCCCCCCCCCCCCCCCC-CCCCCCC--C---ChHHHHHHHHH
Q 029095 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQE-GRLPDAK--Q---GNDHLRQVFGA 147 (199)
Q Consensus 76 ~~~~~i~~iK~~~p~VS~ADli~lAa~~av~--~~GGP~~~v~~GR~D~~~~~~~-~~lP~p~--~---~~~~l~~~F~~ 147 (199)
.|++.+..++++ .|++--.+++....++. .+|...+.++.||.|...-... ..-+.+. . .+.++.+.| +
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~ 203 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-K 203 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-H
Confidence 456666666654 23322222333333332 3577778999999987554111 0111111 2 344666777 6
Q ss_pred hcCCC----------hhhHHHhhhhhh
Q 029095 148 QMGLS----------DKDIVALSGGHT 164 (199)
Q Consensus 148 ~~Gl~----------~~elVaLsGaHt 164 (199)
..|.. ..++..|.|.|+
T Consensus 204 ~~~~~tkiL~AS~r~~~~v~~l~G~d~ 230 (252)
T cd00439 204 QKFKKQRVLWASFSDTLYVAPLIGCDT 230 (252)
T ss_pred HhCCCCeEEEEeeCCHHHHHHhhCCCe
Confidence 66664 455556666664
No 32
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.55 E-value=71 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=36.8
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHHhcCCC----------hhhHHHhhhhhh
Q 029095 107 VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHT 164 (199)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~~~~~~--~lP~----p~~~~~~l~~~F~~~~Gl~----------~~elVaLsGaHt 164 (199)
.+|...+..+.||-+-..-...+ ..+. +-..+.++.+.| ++.|+. ..|+.+|.|.|.
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qv~~laG~d~ 239 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-KKHGYPTEVMGASFRNKEEILALAGCDR 239 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-HHcCCCcEEEeeccCCHHHHHHHHCCCe
Confidence 35778889999998653221111 1111 224567788888 788874 578888888883
No 33
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=20.40 E-value=69 Score=21.36 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHhhh---hhhhhcCCCCCCCCCCCCCCCC
Q 029095 96 LYQLAGV---VGVEVTGGPDIPFHPGRDDKAE 124 (199)
Q Consensus 96 li~lAa~---~av~~~GGP~~~v~~GR~D~~~ 124 (199)
+++||+. +-+..+.||.+++-.||=-...
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptp 40 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTP 40 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCCh
Confidence 4666664 4555688999999999965433
Done!