Query 029096
Match_columns 199
No_of_seqs 175 out of 743
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2107 Uncharacterized conser 100.0 2.1E-66 4.5E-71 425.2 12.5 177 11-187 1-178 (179)
2 PF03079 ARD: ARD/ARD' family; 100.0 3.8E-50 8.3E-55 328.6 12.6 155 13-167 1-157 (157)
3 COG1791 Uncharacterized conser 100.0 4.2E-48 9E-53 318.9 15.3 168 11-187 1-180 (181)
4 PF07883 Cupin_2: Cupin domain 98.9 1.1E-08 2.4E-13 70.4 7.8 61 94-159 10-71 (71)
5 COG1917 Uncharacterized conser 98.8 1.4E-08 2.9E-13 79.1 7.8 63 94-161 55-118 (131)
6 COG0662 {ManC} Mannose-6-phosp 98.8 1.9E-08 4.1E-13 78.9 7.8 61 95-160 49-110 (127)
7 PRK04190 glucose-6-phosphate i 98.7 1.5E-07 3.2E-12 79.6 11.5 85 72-162 68-157 (191)
8 TIGR03037 anthran_nbaC 3-hydro 98.7 7.4E-08 1.6E-12 79.6 7.9 55 95-150 41-95 (159)
9 smart00835 Cupin_1 Cupin. This 98.7 2E-07 4.3E-12 74.2 10.1 77 74-160 32-110 (146)
10 PF00190 Cupin_1: Cupin; Inte 98.7 1.7E-07 3.7E-12 74.4 9.2 85 65-160 28-119 (144)
11 TIGR03214 ura-cupin putative a 98.6 2.1E-07 4.6E-12 81.5 8.3 59 97-161 195-253 (260)
12 PRK13264 3-hydroxyanthranilate 98.6 1.9E-07 4.2E-12 78.3 7.6 55 95-150 47-101 (177)
13 TIGR03404 bicupin_oxalic bicup 98.5 8.2E-07 1.8E-11 81.6 11.4 68 95-162 258-326 (367)
14 PF02311 AraC_binding: AraC-li 98.5 5.5E-07 1.2E-11 67.1 6.9 61 93-158 14-74 (136)
15 PRK13290 ectC L-ectoine syntha 98.3 3.1E-06 6.6E-11 67.0 8.2 61 95-161 48-109 (125)
16 PF06560 GPI: Glucose-6-phosph 98.3 6E-06 1.3E-10 69.6 9.1 93 64-163 43-148 (182)
17 COG2140 Thermophilic glucose-6 98.3 6E-06 1.3E-10 70.9 9.3 69 96-164 94-165 (209)
18 TIGR03404 bicupin_oxalic bicup 98.2 5.6E-06 1.2E-10 76.1 9.5 66 95-161 80-145 (367)
19 PRK09943 DNA-binding transcrip 98.2 5.4E-06 1.2E-10 68.3 8.0 62 95-161 121-182 (185)
20 PLN00212 glutelin; Provisional 98.2 9.1E-06 2E-10 77.5 9.7 68 93-160 91-183 (493)
21 COG4297 Uncharacterized protei 98.1 1.7E-05 3.8E-10 64.6 8.2 110 59-186 34-145 (163)
22 PRK11171 hypothetical protein; 98.1 2.2E-05 4.8E-10 69.0 9.5 58 98-161 201-258 (266)
23 PF02041 Auxin_BP: Auxin bindi 98.0 2.6E-05 5.6E-10 64.3 8.0 72 95-166 57-133 (167)
24 PRK13500 transcriptional activ 98.0 1.3E-05 2.9E-10 70.8 6.5 65 77-153 50-114 (312)
25 PRK13501 transcriptional activ 97.9 1.8E-05 4E-10 68.6 6.2 51 95-150 31-81 (290)
26 PRK10296 DNA-binding transcrip 97.9 3.6E-05 7.7E-10 66.2 7.4 49 94-147 35-83 (278)
27 PRK13503 transcriptional activ 97.9 1.8E-05 3.8E-10 67.6 5.0 53 93-150 26-78 (278)
28 COG4101 Predicted mannose-6-ph 97.9 0.0001 2.2E-09 58.9 8.4 72 73-156 47-119 (142)
29 TIGR01479 GMP_PMI mannose-1-ph 97.8 5.7E-05 1.2E-09 71.2 8.1 63 95-162 389-452 (468)
30 PRK10371 DNA-binding transcrip 97.8 3.6E-05 7.8E-10 68.1 6.4 52 94-150 38-89 (302)
31 PRK13502 transcriptional activ 97.8 5E-05 1.1E-09 65.3 6.6 52 95-151 31-82 (282)
32 TIGR02297 HpaA 4-hydroxyphenyl 97.7 7.5E-05 1.6E-09 64.1 6.7 58 95-157 36-94 (287)
33 PRK15457 ethanolamine utilizat 97.7 9.2E-05 2E-09 64.6 6.8 44 98-146 171-214 (233)
34 COG3435 Gentisate 1,2-dioxygen 97.7 4.5E-05 9.8E-10 69.1 4.5 51 93-147 103-153 (351)
35 PRK15460 cpsB mannose-1-phosph 97.6 0.00035 7.7E-09 66.5 10.2 61 96-161 399-460 (478)
36 COG3837 Uncharacterized conser 97.6 0.00022 4.8E-09 59.0 6.9 64 96-164 57-123 (161)
37 PF01050 MannoseP_isomer: Mann 97.5 0.00054 1.2E-08 56.0 8.7 75 68-158 60-135 (151)
38 TIGR02451 anti_sig_ChrR anti-s 97.5 0.00047 1E-08 59.0 8.7 72 72-162 127-198 (215)
39 PF12973 Cupin_7: ChrR Cupin-l 97.5 0.00015 3.3E-09 53.4 4.7 59 73-150 25-83 (91)
40 TIGR02272 gentisate_1_2 gentis 97.5 0.00028 6E-09 64.6 7.3 54 95-152 94-147 (335)
41 PLN00212 glutelin; Provisional 97.5 0.001 2.2E-08 63.7 11.0 69 93-162 359-429 (493)
42 PRK11171 hypothetical protein; 97.4 0.00056 1.2E-08 60.1 8.1 51 101-156 82-132 (266)
43 TIGR03214 ura-cupin putative a 97.3 0.0011 2.3E-08 58.2 8.3 63 97-164 74-140 (260)
44 PF05899 Cupin_3: Protein of u 97.3 0.00072 1.6E-08 48.5 5.6 42 103-148 26-67 (74)
45 TIGR02272 gentisate_1_2 gentis 97.0 0.0063 1.4E-07 55.8 10.1 87 59-150 215-313 (335)
46 PF06052 3-HAO: 3-hydroxyanthr 96.9 0.0055 1.2E-07 50.4 7.7 54 96-150 47-100 (151)
47 PF05523 FdtA: WxcM-like, C-te 96.8 0.0068 1.5E-07 48.1 7.5 55 96-151 47-103 (131)
48 PF12852 Cupin_6: Cupin 96.6 0.0049 1.1E-07 50.3 5.7 44 104-150 37-80 (186)
49 PF06249 EutQ: Ethanolamine ut 96.5 0.0095 2.1E-07 49.1 7.0 43 101-148 94-136 (152)
50 COG3450 Predicted enzyme of th 96.2 0.0096 2.1E-07 47.0 5.1 48 96-147 56-104 (116)
51 PRK10572 DNA-binding transcrip 96.2 0.013 2.8E-07 50.7 6.4 52 94-150 41-92 (290)
52 PF04209 HgmA: homogentisate 1 95.6 0.028 6.1E-07 53.1 6.1 55 100-159 144-198 (424)
53 COG4766 EutQ Ethanolamine util 95.6 0.049 1.1E-06 45.4 6.8 84 73-166 88-174 (176)
54 PF02373 JmjC: JmjC domain, hy 95.1 0.045 9.7E-07 40.6 4.7 26 121-146 77-102 (114)
55 TIGR01015 hmgA homogentisate 1 94.8 0.1 2.2E-06 49.4 7.4 55 101-160 147-201 (429)
56 PRK05341 homogentisate 1,2-dio 94.5 0.086 1.9E-06 50.0 6.2 44 101-149 153-196 (438)
57 COG3257 GlxB Uncharacterized p 93.8 0.14 3.1E-06 45.0 5.7 57 99-161 200-256 (264)
58 PLN02658 homogentisate 1,2-dio 93.6 0.26 5.7E-06 46.8 7.4 54 101-159 146-200 (435)
59 PRK09685 DNA-binding transcrip 93.3 0.23 4.9E-06 43.0 6.2 49 103-156 72-120 (302)
60 PF13621 Cupin_8: Cupin-like d 93.1 0.25 5.5E-06 40.9 5.9 68 94-161 143-247 (251)
61 KOG3995 3-hydroxyanthranilate 92.8 0.16 3.5E-06 44.5 4.4 66 96-162 47-124 (279)
62 PF14525 AraC_binding_2: AraC- 92.5 0.51 1.1E-05 36.5 6.6 50 104-158 57-106 (172)
63 COG3435 Gentisate 1,2-dioxygen 92.0 0.28 6E-06 45.0 5.0 99 58-166 225-338 (351)
64 PF06339 Ectoine_synth: Ectoin 91.6 2 4.4E-05 34.5 9.0 57 101-162 54-110 (126)
65 PF14499 DUF4437: Domain of un 91.3 0.32 6.9E-06 43.1 4.6 48 96-147 50-97 (251)
66 PF07385 DUF1498: Protein of u 91.0 0.78 1.7E-05 40.2 6.6 26 126-151 155-180 (225)
67 PF00908 dTDP_sugar_isom: dTDP 90.6 2 4.4E-05 35.9 8.5 61 91-151 56-124 (176)
68 PF08007 Cupin_4: Cupin superf 90.4 1.2 2.5E-05 40.1 7.4 55 95-149 128-200 (319)
69 PRK12335 tellurite resistance 90.3 1.8 3.9E-05 38.0 8.4 78 87-164 16-97 (287)
70 COG3822 ABC-type sugar transpo 89.2 0.55 1.2E-05 40.5 4.1 59 93-151 97-179 (225)
71 KOG2757 Mannose-6-phosphate is 89.1 0.95 2.1E-05 42.4 5.9 55 103-162 354-408 (411)
72 PF11699 CENP-C_C: Mif2/CENP-C 89.1 0.73 1.6E-05 34.3 4.3 66 71-150 11-76 (85)
73 COG3257 GlxB Uncharacterized p 88.8 1.5 3.2E-05 38.7 6.6 42 103-149 84-125 (264)
74 PF04962 KduI: KduI/IolB famil 88.6 0.69 1.5E-05 40.9 4.5 47 95-143 166-227 (261)
75 TIGR01221 rmlC dTDP-4-dehydror 88.4 4.2 9.2E-05 34.0 8.9 56 96-151 58-124 (176)
76 PF02678 Pirin: Pirin; InterP 88.3 3 6.5E-05 32.2 7.4 61 95-159 42-106 (107)
77 COG3508 HmgA Homogentisate 1,2 86.7 2.5 5.4E-05 39.7 7.0 46 101-151 145-190 (427)
78 TIGR00218 manA mannose-6-phosp 82.8 0.65 1.4E-05 41.4 1.4 20 126-145 152-171 (302)
79 COG1482 ManA Phosphomannose is 82.2 0.94 2E-05 41.4 2.2 23 126-148 159-181 (312)
80 PF13759 2OG-FeII_Oxy_5: Putat 80.8 1.9 4.1E-05 32.0 3.1 25 123-147 64-88 (101)
81 COG1898 RfbC dTDP-4-dehydrorha 80.3 13 0.00029 31.2 8.3 57 96-152 59-125 (173)
82 PF09313 DUF1971: Domain of un 79.3 7 0.00015 28.9 5.7 59 92-150 13-75 (82)
83 PF06172 Cupin_5: Cupin superf 76.1 16 0.00035 29.4 7.4 57 93-149 52-115 (139)
84 PF14499 DUF4437: Domain of un 74.9 3 6.6E-05 37.0 3.2 61 95-158 184-244 (251)
85 PRK15131 mannose-6-phosphate i 73.0 2.7 5.8E-05 39.3 2.5 23 126-148 238-260 (389)
86 TIGR00218 manA mannose-6-phosp 70.9 9.3 0.0002 34.0 5.3 39 102-145 253-291 (302)
87 PRK00924 5-keto-4-deoxyuronate 70.8 7.6 0.00016 35.0 4.7 45 95-145 191-245 (276)
88 PF06865 DUF1255: Protein of u 68.0 20 0.00042 27.5 5.8 46 102-150 41-86 (94)
89 PRK15131 mannose-6-phosphate i 67.7 13 0.00027 34.8 5.7 40 102-146 339-378 (389)
90 cd00038 CAP_ED effector domain 65.5 22 0.00048 24.5 5.4 37 102-138 35-72 (115)
91 PRK10579 hypothetical protein; 64.6 30 0.00065 26.5 6.2 44 103-149 42-85 (94)
92 COG1741 Pirin-related protein 61.5 26 0.00057 31.4 6.3 81 70-162 39-125 (276)
93 PRK15186 AraC family transcrip 57.2 24 0.00052 31.6 5.3 43 104-150 40-82 (291)
94 COG2850 Uncharacterized conser 56.6 6.8 0.00015 36.8 1.7 23 126-148 180-202 (383)
95 PRK13918 CRP/FNR family transc 56.3 52 0.0011 26.3 6.8 36 103-138 27-63 (202)
96 PRK09391 fixK transcriptional 55.9 67 0.0014 26.9 7.6 57 102-158 56-113 (230)
97 PRK11753 DNA-binding transcrip 55.9 77 0.0017 25.4 7.8 57 102-158 38-99 (211)
98 KOG3706 Uncharacterized conser 55.9 8 0.00017 37.8 2.2 67 95-161 331-417 (629)
99 PF00027 cNMP_binding: Cyclic 54.5 48 0.001 22.2 5.5 38 102-139 17-55 (91)
100 COG1482 ManA Phosphomannose is 49.0 45 0.00097 30.6 5.8 81 62-149 205-302 (312)
101 PRK09392 ftrB transcriptional 46.6 1E+02 0.0022 25.4 7.3 57 102-158 48-107 (236)
102 PRK10402 DNA-binding transcrip 46.5 1.7E+02 0.0037 24.2 9.1 38 102-139 49-87 (226)
103 smart00652 eIF1a eukaryotic tr 45.2 41 0.00089 24.8 4.1 28 110-137 15-52 (83)
104 PF05995 CDO_I: Cysteine dioxy 44.5 1.8E+02 0.0038 23.9 9.9 70 93-162 86-165 (175)
105 cd05793 S1_IF1A S1_IF1A: Trans 44.4 45 0.00098 24.2 4.1 28 110-137 10-47 (77)
106 PLN02288 mannose-6-phosphate i 43.4 40 0.00086 31.7 4.7 39 101-142 353-391 (394)
107 smart00100 cNMP Cyclic nucleot 43.0 81 0.0018 21.5 5.3 38 102-139 35-73 (120)
108 PF10983 DUF2793: Protein of u 38.1 74 0.0016 23.8 4.5 42 130-172 29-75 (87)
109 cd04456 S1_IF1A_like S1_IF1A_l 37.9 54 0.0012 23.9 3.7 28 110-137 10-47 (78)
110 PLN02288 mannose-6-phosphate i 37.0 28 0.00061 32.7 2.6 24 126-149 252-275 (394)
111 KOG3416 Predicted nucleic acid 35.6 64 0.0014 26.2 4.1 56 101-167 34-93 (134)
112 PF05726 Pirin_C: Pirin C-term 35.3 1.1E+02 0.0023 22.8 5.1 54 101-163 19-72 (104)
113 TIGR02466 conserved hypothetic 34.6 68 0.0015 27.3 4.4 86 60-147 75-184 (201)
114 PF05721 PhyH: Phytanoyl-CoA d 34.6 25 0.00054 27.5 1.6 26 122-147 177-202 (211)
115 TIGR00523 eIF-1A eukaryotic/ar 34.5 67 0.0014 24.6 3.9 28 110-137 29-66 (99)
116 PRK11161 fumarate/nitrate redu 34.3 1.9E+02 0.0042 23.7 7.0 37 102-138 55-92 (235)
117 COG3123 Uncharacterized protei 34.1 1.1E+02 0.0024 23.3 4.9 43 102-147 41-83 (94)
118 COG0361 InfA Translation initi 34.0 80 0.0017 23.2 4.0 12 126-137 44-55 (75)
119 PRK04012 translation initiatio 32.5 76 0.0017 24.3 3.9 28 110-137 31-68 (100)
120 PHA02890 hypothetical protein; 31.7 2.1E+02 0.0044 26.0 7.0 59 103-163 91-151 (278)
121 PF11142 DUF2917: Protein of u 31.4 70 0.0015 22.2 3.3 39 106-147 20-58 (63)
122 PF07653 SH3_2: Variant SH3 do 31.3 48 0.001 21.7 2.3 34 127-168 16-49 (55)
123 TIGR00568 alkb DNA alkylation 31.1 1E+02 0.0022 25.5 4.7 40 106-145 125-166 (169)
124 TIGR03805 beta_helix_1 paralle 30.2 26 0.00057 31.5 1.2 16 128-143 7-22 (314)
125 cd00248 Mth938-like Mth938-lik 30.2 50 0.0011 25.2 2.6 27 111-145 6-32 (109)
126 COG0664 Crp cAMP-binding prote 29.7 1.1E+02 0.0023 23.9 4.5 39 103-141 42-81 (214)
127 PRK10202 ebgC cryptic beta-D-g 29.6 2.6E+02 0.0057 22.5 6.8 46 101-146 64-127 (149)
128 PF13464 DUF4115: Domain of un 29.5 2E+02 0.0043 20.1 7.1 46 107-152 3-49 (77)
129 TIGR03697 NtcA_cyano global ni 28.8 1.3E+02 0.0028 23.7 4.9 35 103-137 12-47 (193)
130 PF01176 eIF-1a: Translation i 28.7 60 0.0013 22.5 2.6 28 110-137 13-50 (65)
131 PF13532 2OG-FeII_Oxy_2: 2OG-F 28.3 1.8E+02 0.0038 23.3 5.7 37 107-143 128-166 (194)
132 PRK15401 alpha-ketoglutarate-d 28.2 1.1E+02 0.0023 26.5 4.6 41 106-146 146-188 (213)
133 cd06919 Asp_decarbox Aspartate 28.2 32 0.00069 27.1 1.2 30 106-139 56-88 (111)
134 PF13640 2OG-FeII_Oxy_3: 2OG-F 28.2 89 0.0019 22.3 3.6 57 92-148 9-86 (100)
135 PRK15372 pathogenicity island 26.3 1.9E+02 0.0041 26.2 5.8 76 103-188 55-134 (292)
136 cd05792 S1_eIF1AD_like S1_eIF1 26.0 1.2E+02 0.0027 22.2 3.9 28 110-137 10-47 (78)
137 PRK10884 SH3 domain-containing 25.6 2.8E+02 0.0062 23.7 6.7 59 103-168 23-82 (206)
138 PF04622 ERG2_Sigma1R: ERG2 an 25.1 2E+02 0.0043 25.0 5.7 61 99-167 116-176 (216)
139 PLN02868 acyl-CoA thioesterase 24.8 1.6E+02 0.0035 27.1 5.4 36 103-138 50-85 (413)
140 PHA02984 hypothetical protein; 24.7 3.4E+02 0.0073 24.8 7.1 55 103-158 92-149 (286)
141 TIGR03027 pepcterm_export puta 24.6 49 0.0011 26.7 1.7 16 126-141 149-164 (165)
142 TIGR00223 panD L-aspartate-alp 24.4 40 0.00087 27.2 1.1 31 106-140 57-90 (126)
143 PF04773 FecR: FecR protein; 24.4 2.5E+02 0.0055 19.6 6.0 57 103-161 39-95 (98)
144 PLN00208 translation initiatio 24.2 1.3E+02 0.0028 24.7 4.1 28 111-138 43-80 (145)
145 PRK05449 aspartate alpha-decar 24.1 41 0.00089 27.1 1.2 30 106-139 57-89 (126)
146 COG3145 AlkB Alkylated DNA rep 23.9 1.5E+02 0.0032 25.4 4.6 41 106-146 136-178 (194)
147 PF06719 AraC_N: AraC-type tra 23.6 3.8E+02 0.0082 21.3 7.3 55 100-159 21-78 (155)
148 PF01987 AIM24: Mitochondrial 23.4 1.1E+02 0.0024 25.4 3.7 33 107-140 134-166 (215)
149 PLN02168 copper ion binding / 22.2 2.2E+02 0.0048 27.9 6.0 57 95-166 437-496 (545)
150 KOG1641 Mitochondrial chaperon 21.8 1.7E+02 0.0037 22.8 4.1 55 93-150 33-88 (104)
151 cd03028 GRX_PICOT_like Glutare 21.4 2.2E+02 0.0049 20.3 4.6 51 39-91 31-81 (90)
152 PTZ00329 eukaryotic translatio 21.1 1.6E+02 0.0034 24.6 4.0 27 111-137 43-79 (155)
153 TIGR00192 urease_beta urease, 21.1 73 0.0016 24.8 2.0 29 130-158 56-84 (101)
154 PRK13201 ureB urease subunit b 20.5 73 0.0016 26.0 1.9 28 131-158 57-84 (136)
No 1
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=2.1e-66 Score=425.23 Aligned_cols=177 Identities=71% Similarity=1.302 Sum_probs=173.5
Q ss_pred ceeEEEecCC-CCCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCccChHHHHHHHHhcCCCeeeeEEECCCCCCChHH
Q 029096 11 VIQAWYMDDS-DEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEE 89 (199)
Q Consensus 11 m~~aw~~d~~-~~d~~l~~~~~p~~~v~~~~L~~lGV~~w~~~~~~~~~~~~l~~l~~e~gY~~~Dvv~i~p~~~p~~e~ 89 (199)
||+||||++. ++|||+|||.+|++.||+++|+++||.||++++++++.+++|++|++++||+++|+++++|+++|||++
T Consensus 1 m~qaw~mdd~~~~D~RlPhh~~p~~~vs~d~L~~lGVly~kld~D~~e~~~~L~~lr~e~~~~~~d~~~~~~e~~~nfde 80 (179)
T KOG2107|consen 1 MMQAWYMDDSPCEDQRLPHHKDPKKEVSLDELARLGVLYWKLDADNYELDEELDRLREERGYSYMDICTVCPETLPNFDE 80 (179)
T ss_pred CeeEEEcCCCCcccccCCCCCCCcccCCHHHHHhhCcEEEEecCchHHHHHHHHHHHHHcCCceeeEEEEchhhcccHHH
Confidence 8999999996 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCceeecC
Q 029096 90 KIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFN 169 (199)
Q Consensus 90 ~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~gW~~~~ 169 (199)
|+++||.||+|.++|||||++|+|||+||+++|.||||.|++||||+||||||||||++++++++|+|||.++|.|+|+|
T Consensus 81 Kvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~wta~n 160 (179)
T KOG2107|consen 81 KVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPKWTAYN 160 (179)
T ss_pred HHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhh
Q 029096 170 RPHDHLPARKGYVQNFLQ 187 (199)
Q Consensus 170 r~~d~~~~r~~yl~~~~~ 187 (199)
||+|+.++|++||..|+.
T Consensus 161 R~~d~l~~r~~yl~~i~~ 178 (179)
T KOG2107|consen 161 RPHDELPARKQYLNFISQ 178 (179)
T ss_pred CccccchhHHHHHhhccc
Confidence 999999999999999863
No 2
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=100.00 E-value=3.8e-50 Score=328.62 Aligned_cols=155 Identities=58% Similarity=1.009 Sum_probs=133.8
Q ss_pred eEEEecCCC-CCCCCCCCCCCCCcCCHhHHhhcCeEEEEeCCCCccChHHHHHHHHhcCCCeeee-EEECCCCCCChHHH
Q 029096 13 QAWYMDDSD-EDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDF-CEVCPEKLPNYEEK 90 (199)
Q Consensus 13 ~aw~~d~~~-~d~~l~~~~~p~~~v~~~~L~~lGV~~w~~~~~~~~~~~~l~~l~~e~gY~~~Dv-v~i~p~~~p~~e~~ 90 (199)
+||||++.+ +|+++||+++|++++|+.+|+++||.+|+++.++.+....++.|.+.++|..+++ |...+..+||++++
T Consensus 1 ~~~~~d~~~~~d~~~~~~~~p~~~~s~~~l~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~p~~~~~ 80 (157)
T PF03079_consen 1 RAWYYDEEDPGDQRLPHHSDPDKIVSLLQLAGLGVLYWKLDADDPEDAEELQIIRAYRNYIDRDIDVVSLHPDHPNYEAK 80 (157)
T ss_dssp EEEEB-S--S-STCCEEE-SCHHCHHHHHCCCTCEEEEE-SCGGTTS-HHHHHHHHCHCHHCCCCEEEESTTTSTCHHHH
T ss_pred CEEEECCCCcccCCCcccCCcccccCHHHhhCceEEEeecCCCccCCccHHHHHHHHcCCceEEEEEEecCCCCcchhHH
Confidence 699999976 7999999999999999999999999999999887777889999999999999886 44444446999999
Q ss_pred HhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCceee
Q 029096 91 IKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 167 (199)
Q Consensus 91 ~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~gW~~ 167 (199)
+++|+.||+|+++|||||++|+|+|+|++.++.|+||.|++||||+|||||+|||+++++++|+|||||++++||+|
T Consensus 81 ~~~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~gWva 157 (157)
T PF03079_consen 81 LKKFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEPGWVA 157 (157)
T ss_dssp HHHHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCGGEES
T ss_pred hhhhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=100.00 E-value=4.2e-48 Score=318.91 Aligned_cols=168 Identities=32% Similarity=0.547 Sum_probs=148.7
Q ss_pred ceeEEEecCCCCCCCCCCCCCCCCcCCHhHHhhcCeEE--EEeCCCCc----------cChHHHHHHHHhcCCCeeeeEE
Q 029096 11 VIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLS--WRLDADNY----------ETDEELKKIREDRGYSYMDFCE 78 (199)
Q Consensus 11 m~~aw~~d~~~~d~~l~~~~~p~~~v~~~~L~~lGV~~--w~~~~~~~----------~~~~~l~~l~~e~gY~~~Dvv~ 78 (199)
|++++++|+. .-.+++..++ ..|+++||.| |.+.+... .+..++++|++++||+++|||+
T Consensus 1 Ms~l~I~d~~------~~~~~~deia--~~l~~i~v~~e~we~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvs 72 (181)
T COG1791 1 MSRLRIHDET------KIITNQDEIA--PELSKIEVSFERWEATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVS 72 (181)
T ss_pred CceEEEecCc------ccccCHhHhh--hhcccceeEhhhhhhccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEE
Confidence 8899999887 1112455666 7888889998 55333211 2678999999999999999999
Q ss_pred ECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 79 VCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 79 i~p~~~p~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
|+|++ |++++++++|++||+|+++||||||+|.|+|+|++.|++|++|.|++||||+||+||+|||+++++++|+||||
T Consensus 73 v~~~~-pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl 151 (181)
T COG1791 73 VSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL 151 (181)
T ss_pred eCCCC-ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE
Confidence 99987 99999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ecCCCceeecCCCCCCchhHHHHHHHHhh
Q 029096 159 FVGDPVWTPFNRPHDHLPARKGYVQNFLQ 187 (199)
Q Consensus 159 F~~~~gW~~~~r~~d~~~~r~~yl~~~~~ 187 (199)
|+.++||+|+++..|.+++|..|+..+.+
T Consensus 152 F~~~~gWVa~ytg~di~~~~~~y~~~i~~ 180 (181)
T COG1791 152 FTEPEGWVAIYTGDDIADRFPKYIEEINQ 180 (181)
T ss_pred eeCCCCceeeecCchhHHHHHHHHHHhhc
Confidence 99999999999988888888889998863
No 4
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.88 E-value=1.1e-08 Score=70.43 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=52.9
Q ss_pred cccccccCcc-eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEe
Q 029096 94 FFEEHLHTDE-EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLF 159 (199)
Q Consensus 94 f~~eH~H~dd-Evr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF 159 (199)
-...|.|... |+.||++|++.+.+. ++ ++.+++||.+.+|+|+.|++....+..++.+-+|
T Consensus 10 ~~~~h~H~~~~e~~~vl~G~~~~~~~---~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 10 SIPPHRHPGEDEFFYVLSGEGTLTVD---GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEEEESSEEEEEEEEESEEEEEET---TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred CCCCEECCCCCEEEEEEECCEEEEEc---cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 3679999987 999999999999974 44 5789999999999999999998888778877665
No 5
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.83 E-value=1.4e-08 Score=79.12 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=51.8
Q ss_pred cccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 94 FFEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 94 f~~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
-..+|+|+ .+++.||++|++.|++. ++ ...+.+||+|++|+|+.||+...++..+..|-++..
T Consensus 55 ~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 55 VIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred ccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence 37899998 78999999999999997 33 267999999999999999998877664455555544
No 6
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=1.9e-08 Score=78.93 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=49.2
Q ss_pred ccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEec
Q 029096 95 FEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFV 160 (199)
Q Consensus 95 ~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~ 160 (199)
+.+|.|.. +|++||++|+|.+.++ |+ .+.+++||.+.||+|+.|++....+..++.+-+..
T Consensus 49 ~~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~ 110 (127)
T COG0662 49 ISLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS 110 (127)
T ss_pred cCcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence 35666665 9999999999999997 33 47899999999999999999876665566555443
No 7
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.73 E-value=1.5e-07 Score=79.65 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=65.3
Q ss_pred CeeeeEEECCCCCCChHHHHhcccc--ccccC---cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeee
Q 029096 72 SYMDFCEVCPEKLPNYEEKIKNFFE--EHLHT---DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 72 ~~~Dvv~i~p~~~p~~e~~~~~f~~--eH~H~---ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
-..++.+|.|.... +.|+. -|.|. ..|+.||++|+|.+.+.+.+++...+.+.+||++.||+|+.|++.
T Consensus 68 L~~g~t~l~PG~~g------~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 68 LNFGTTRLYPGKVG------DEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred eEEEEEEECCCcEe------cccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 35588899887521 23322 37774 369999999999999987666666789999999999999999998
Q ss_pred ecCCCcEEEEEEecCC
Q 029096 147 LDTDNYIKAMRLFVGD 162 (199)
Q Consensus 147 ~~~~~~~~alRlF~~~ 162 (199)
...+..++.+-++...
T Consensus 142 N~G~epl~fl~v~p~~ 157 (191)
T PRK04190 142 NTGDEPLVFLACYPAD 157 (191)
T ss_pred ECCCCCEEEEEEEcCC
Confidence 7666667777666543
No 8
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.68 E-value=7.4e-08 Score=79.55 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=47.3
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
+.+|.|+.||.+|+++|++.+.+++. ++.-.|.+++||+++||+|++|.+...++
T Consensus 41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred cccccCCCceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 56899999999999999999999843 44345899999999999999999987555
No 9
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=98.67 E-value=2e-07 Score=74.16 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=60.1
Q ss_pred eeeEEECCCCCCChHHHHhccccccccC-cceEEEEEeceEEEEEEeCC-CcEEEEEEecCCEEEeCCCCceeeeecCCC
Q 029096 74 MDFCEVCPEKLPNYEEKIKNFFEEHLHT-DEEIRYCVAGSGYFDVRDRN-EKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 74 ~Dvv~i~p~~~p~~e~~~~~f~~eH~H~-ddEvr~il~G~g~f~v~~~~-d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~ 151 (199)
.-.+++.|.. +...|.|. .+|+.||++|++.+.+.+.+ ++.....+++||++.||+|+.|++....+.
T Consensus 32 ~~~~~i~pg~----------~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~ 101 (146)
T smart00835 32 AARVNLEPGG----------MLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDE 101 (146)
T ss_pred EEEEEecCCc----------CcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCC
Confidence 3455666654 36799997 58999999999999997653 456678999999999999999999876666
Q ss_pred cEEEEEEec
Q 029096 152 YIKAMRLFV 160 (199)
Q Consensus 152 ~~~alRlF~ 160 (199)
.+..+-+..
T Consensus 102 ~~~~l~~~~ 110 (146)
T smart00835 102 NLEFVAFNT 110 (146)
T ss_pred CEEEEEEec
Confidence 676664433
No 10
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.66 E-value=1.7e-07 Score=74.39 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=59.4
Q ss_pred HHHhcCCCeeeeEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCC-----cEEEE--EEecCCEEEe
Q 029096 65 IREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNE-----KWIRI--WVKKGGMIVL 137 (199)
Q Consensus 65 l~~e~gY~~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d-----~~~ri--~~~~GDlI~v 137 (199)
+....++ ..-.+.|.|.+ +...|.|...|+.||++|+|++.+-..++ +...- .+++||+++|
T Consensus 28 ~~~~~~~-~~~~~~i~pg~----------~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 28 LLGLNGV-AVRRVLIEPGG----------LRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp HHHHTTE-EEEEEEEETTE----------EEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred eecccce-EEEeeehhcCC----------ccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 3333444 34555567664 47899996699999999999999987655 23333 4999999999
Q ss_pred CCCCceeeeecCCCcEEEEEEec
Q 029096 138 PAGCYHRFTLDTDNYIKAMRLFV 160 (199)
Q Consensus 138 PaG~~HrF~~~~~~~~~alRlF~ 160 (199)
|+|..||...+.++....+.+|.
T Consensus 97 P~G~~h~~~n~~~~~~~~~~~f~ 119 (144)
T PF00190_consen 97 PAGHPHWIINDGDDEALVLIIFD 119 (144)
T ss_dssp -TT-EEEEEECSSSSEEEEEEEE
T ss_pred ccceeEEEEcCCCCCCEEEEEEE
Confidence 99999999987644444444543
No 11
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.58 E-value=2.1e-07 Score=81.46 Aligned_cols=59 Identities=20% Similarity=0.390 Sum_probs=50.9
Q ss_pred ccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 97 EHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 97 eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
-|+|.++|..|||+|+|.|.+ |++| +.+++||+|.||+|..||+..+.+..++.| ||++
T Consensus 195 ~~~H~~eh~~yiL~G~G~~~~---~g~~--~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l-~ykd 253 (260)
T TIGR03214 195 IETHVMEHGLYVLEGKGVYNL---DNNW--VPVEAGDYIWMGAYCPQACYAGGRGEFRYL-LYKD 253 (260)
T ss_pred cccccceeEEEEEeceEEEEE---CCEE--EEecCCCEEEECCCCCEEEEecCCCcEEEE-EEcc
Confidence 478888999999999999988 4777 579999999999999999988766667777 6765
No 12
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.57 E-value=1.9e-07 Score=78.28 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=47.2
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
..+|.|+.+|.+|+++|++...+++ +++.-.|.+.+||+++||+|++|+....++
T Consensus 47 ~d~H~~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~ 101 (177)
T PRK13264 47 TDFHYDPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAG 101 (177)
T ss_pred cccccCCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence 5789999999999999999999985 444346899999999999999999976443
No 13
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.54 E-value=8.2e-07 Score=81.57 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=58.1
Q ss_pred ccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCC
Q 029096 95 FEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (199)
Q Consensus 95 ~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~ 162 (199)
...|.|.. +|+.||++|++.+.|.+.++......+++||+++||+|..|++....+..++.+-+|+.+
T Consensus 258 ~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~ 326 (367)
T TIGR03404 258 RELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKAD 326 (367)
T ss_pred cCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCC
Confidence 57899995 899999999999999766555556789999999999999999987666678888888763
No 14
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.46 E-value=5.5e-07 Score=67.07 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=43.2
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 93 ~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
..+..|.|+.-|+.||++|+|.+.++ ++ ...+++||++.+|+|..|.+...++..+...-+
T Consensus 14 ~~~~~h~h~~~~i~~v~~G~~~~~~~---~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 14 FEFPPHWHDFYEIIYVLSGEGTLHID---GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp -SEEEETT-SEEEEEEEEE-EEEEET---TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred CccCCEECCCEEEEEEeCCEEEEEEC---CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 34688999999999999999999885 44 478999999999999999999888644443333
No 15
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.32 E-value=3.1e-06 Score=67.01 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=49.2
Q ss_pred ccccccCcceEEEEEeceEEEE-EEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFD-VRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~-v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
...|+|...|+.||++|++.|. +. +++ ...+++||.+.+|+|..|++... ..+..|-++++
T Consensus 48 ~~~h~h~~~E~~yVL~G~~~~~~i~--~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~tP 109 (125)
T PRK13290 48 THLHYKNHLEAVYCIEGEGEVEDLA--TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFNP 109 (125)
T ss_pred ccceeCCCEEEEEEEeCEEEEEEcC--CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEECC
Confidence 4668887679999999999999 63 244 37899999999999999999986 34666666764
No 16
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.26 E-value=6e-06 Score=69.60 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=57.2
Q ss_pred HHHHhcCCCeeeeEEECCCCCCChHHHHhcccc--ccccCc-------ceEEEEEeceEEEEEEeCCC----cEEEEEEe
Q 029096 64 KIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFE--EHLHTD-------EEIRYCVAGSGYFDVRDRNE----KWIRIWVK 130 (199)
Q Consensus 64 ~l~~e~gY~~~Dvv~i~p~~~p~~e~~~~~f~~--eH~H~d-------dEvr~il~G~g~f~v~~~~d----~~~ri~~~ 130 (199)
++.++++..+ |+..|.|..+. ..|+. =|.|.. .|++++++|+|.|.+.+.++ +++.+.++
T Consensus 43 ~~~~~~~L~y-giTvi~Pg~vG------~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~ 115 (182)
T PF06560_consen 43 EWLQKRNLRY-GITVIPPGKVG------GEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAK 115 (182)
T ss_dssp -------EEE-EEEEE---EET------TEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-
T ss_pred ccceeeeEEe-eeEEEcCcccC------CccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeC
Confidence 4556666644 89999988654 23433 477764 79999999999999998877 78889999
Q ss_pred cCCEEEeCCCCceeeeecCCCcEEEEEEecCCC
Q 029096 131 KGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDP 163 (199)
Q Consensus 131 ~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~ 163 (199)
+||++.||+|..|+-....+..+++.-++...-
T Consensus 116 ~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~~ 148 (182)
T PF06560_consen 116 PGDVVYIPPGYAHRTINTGDEPLVFAAWVPRDA 148 (182)
T ss_dssp TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT-
T ss_pred CCCEEEECCCceEEEEECCCCcEEEEEEEecCC
Confidence 999999999999998766666677776665443
No 17
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.26 E-value=6e-06 Score=70.93 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=59.7
Q ss_pred cccccCc-ce--EEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCc
Q 029096 96 EEHLHTD-EE--IRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPV 164 (199)
Q Consensus 96 ~eH~H~d-dE--vr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~g 164 (199)
.-|.|.. || +.|+++|+|.+.|....++.+.+.+++||+|.||+|--|+-..+.+..+..+-+|....+
T Consensus 94 ~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~ 165 (209)
T COG2140 94 ELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAG 165 (209)
T ss_pred ccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCC
Confidence 3499975 55 999999999999998888888899999999999999999998777777888888876543
No 18
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=98.25 E-value=5.6e-06 Score=76.08 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=54.0
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
...|.|..+|+.||++|++.+.+.+.+++.+...+++||++++|+|+.|.+....+ ....+-+|..
T Consensus 80 ~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~-~~~~l~vf~~ 145 (367)
T TIGR03404 80 RELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDE-GCEFLLVFDD 145 (367)
T ss_pred CCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCC-CeEEEEEeCC
Confidence 46899988999999999999999876677665589999999999999999987643 3555555554
No 19
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.22 E-value=5.4e-06 Score=68.33 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=50.7
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
...|.|..+|+.||++|++.+.+. ++ ...+++||.+.+|+++.|++....+..++++-++.+
T Consensus 121 ~~~~~h~~~E~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p 182 (185)
T PRK09943 121 GERIKHQGEEIGTVLEGEIVLTIN---GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTP 182 (185)
T ss_pred ccccccCCcEEEEEEEeEEEEEEC---CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCC
Confidence 346778889999999999999995 44 368999999999999999988766666777766553
No 20
>PLN00212 glutelin; Provisional
Probab=98.18 E-value=9.1e-06 Score=77.53 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCcE-------------------------EEEEEecCCEEEeCCCCceeeee
Q 029096 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKW-------------------------IRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 93 ~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~-------------------------~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
.++..|+|...++.||+.|+|++++-..+... ---.+++||+|.||||+.||...
T Consensus 91 gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN 170 (493)
T PLN00212 91 GLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYN 170 (493)
T ss_pred cccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEe
Confidence 46889999889999999999999997432100 01378999999999999999998
Q ss_pred cCCCcEEEEEEec
Q 029096 148 DTDNYIKAMRLFV 160 (199)
Q Consensus 148 ~~~~~~~alRlF~ 160 (199)
+.+..+.++.++.
T Consensus 171 ~Gd~~~v~v~~~d 183 (493)
T PLN00212 171 DGDAPVVALYVYD 183 (493)
T ss_pred CCCCcEEEEEEEe
Confidence 8777788887775
No 21
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.09 E-value=1.7e-05 Score=64.64 Aligned_cols=110 Identities=13% Similarity=0.194 Sum_probs=80.6
Q ss_pred hHHHHHHHHhcCCCeeeeEEECCCCCCChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEe
Q 029096 59 DEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVL 137 (199)
Q Consensus 59 ~~~l~~l~~e~gY~~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~v 137 (199)
...++++.+.+|+.. +++ + .-|---|.|+. .||.-+++|+....|++.++. .+.+..||.|+|
T Consensus 34 a~~~e~~~~~~gW~g----sW~-g---------~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlli 97 (163)
T COG4297 34 AAQVEDHFKANGWFG----SWR-G---------GVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLI 97 (163)
T ss_pred HHHHHHHHhhcCCcc----ccc-c---------cccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEE
Confidence 467999999999963 111 1 23445688886 899999999999999988887 588999999999
Q ss_pred CCCCceeeeecCCCcEEEEEEecCCCceeecCCCCCC-chhHHHHHHHHh
Q 029096 138 PAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDH-LPARKGYVQNFL 186 (199)
Q Consensus 138 PaG~~HrF~~~~~~~~~alRlF~~~~gW~~~~r~~d~-~~~r~~yl~~~~ 186 (199)
|||+-|+- +..+..|+.+--|.+-..|. +.++++. .+.-.+.++++.
T Consensus 98 PAGvGH~r-l~sS~DF~VvGaYp~G~q~d-iqtg~~t~~aear~~I~~vp 145 (163)
T COG4297 98 PAGVGHCR-LHSSADFQVVGAYPPGQQAD-IQTGAPTDLAEARARIKSVP 145 (163)
T ss_pred ecCccccc-ccCCCCeEEEcccCCccccc-ccCCCCccHHHHHHHHHcCC
Confidence 99999975 34556689998888766665 3666533 233334455543
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.09 E-value=2.2e-05 Score=68.96 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=47.3
Q ss_pred cccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 98 HLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 98 H~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
|.|..+|..||++|+|.+.+. ++| ..+++||.|.+|++..|+|....+..++.+ +|++
T Consensus 201 ~~~~~ee~i~Vl~G~~~~~~~---~~~--~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl-~~k~ 258 (266)
T PRK11171 201 ETHVMEHGLYVLEGKGVYRLN---NDW--VEVEAGDFIWMRAYCPQACYAGGPGPFRYL-LYKD 258 (266)
T ss_pred cCCCceEEEEEEeCEEEEEEC---CEE--EEeCCCCEEEECCCCCEEEECCCCCcEEEE-EEcc
Confidence 568889999999999999984 676 579999999999999999987555445554 4544
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.02 E-value=2.6e-05 Score=64.32 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=47.3
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCC----CcEEEEEEecCCEEEeCCCCcee-eeecCCCcEEEEEEecCCCcee
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRN----EKWIRIWVKKGGMIVLPAGCYHR-FTLDTDNYIKAMRLFVGDPVWT 166 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~----d~~~ri~~~~GDlI~vPaG~~Hr-F~~~~~~~~~alRlF~~~~gW~ 166 (199)
-+.|.|+-|||++|++|+|+..+.... ++--++..-+++.+.||.+..|. |.+++...++++-+.+.+|.=+
T Consensus 57 TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPvkv 133 (167)
T PF02041_consen 57 TPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPVKV 133 (167)
T ss_dssp --EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS--E
T ss_pred CCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCeEE
Confidence 478999999999999999999998553 55567899999999999999996 6777778899999999887633
No 24
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.00 E-value=1.3e-05 Score=70.83 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=52.1
Q ss_pred EEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcE
Q 029096 77 CEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYI 153 (199)
Q Consensus 77 v~i~p~~~p~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~ 153 (199)
|.+.+.. |+ ..+.+|.|+.-|+.||++|+|.+.+. ++ ...+.+||+++||+|..|.+...++...
T Consensus 50 ~~v~~~~-~~------~~~~~H~H~~~el~~v~~G~g~~~v~---~~--~~~l~~Gdl~~I~~~~~H~~~~~~~~~~ 114 (312)
T PRK13500 50 VAVADRY-PQ------DVFAEHTHDFCELVIVWRGNGLHVLN---DR--PYRITRGDLFYIHADDKHSYASVNDLVL 114 (312)
T ss_pred EEEecCC-CC------CCCCccccceEEEEEEEcCeEEEEEC---CE--EEeecCCeEEEECCCCeecccccCCceE
Confidence 6666543 53 23689999999999999999999996 33 4689999999999999999987555433
No 25
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.94 E-value=1.8e-05 Score=68.62 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=44.8
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
..+|.|+.-|+.||++|+|.+.|. ++ ...+++||+++||+|..|.+....+
T Consensus 31 ~~~H~H~~~ei~~i~~G~~~~~i~---~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 31 FVEHTHQFCEIVIVWRGNGLHVLN---DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CccccccceeEEEEecCceEEEEC---Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 568999999999999999999995 43 4789999999999999999876543
No 26
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.91 E-value=3.6e-05 Score=66.19 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=43.1
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 94 f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
....|.|+.-|+.||++|++.+.+. ++ .+.+.+||+++||+|..|.+..
T Consensus 35 ~~~~H~H~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~l~~i~p~~~H~~~~ 83 (278)
T PRK10296 35 VSGLHQHDYYEFTLVLTGRYYQEIN---GK--RVLLERGDFVFIPLGSHHQSFY 83 (278)
T ss_pred CCCCcccccEEEEEEEeceEEEEEC---CE--EEEECCCcEEEeCCCCccceee
Confidence 4579999999999999999999995 43 4789999999999999997643
No 27
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.88 E-value=1.8e-05 Score=67.57 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=45.6
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 93 ~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
..+.+|.|+.-|+.||++|+|.+.+. ++ .+.+.+||+++||+|+.|.+...++
T Consensus 26 ~~~~~H~H~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 26 AAFPEHHHDFHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred ccccccccCceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhccC
Confidence 34689999999999999999999996 33 3679999999999999998876544
No 28
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.0001 Score=58.95 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=54.8
Q ss_pred eeeeEEECCCCCCChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCC
Q 029096 73 YMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 73 ~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~ 151 (199)
++-+|+|.|.. . -..|.|.+ |-+.|+|+|+.....++.=+ .-+.+.+||+|.||+|++|--..-++.
T Consensus 47 ~~~~vTi~pgA----k------akaH~H~~hEtaIYvlsG~ah~w~G~rLE--~ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 47 CMHLVTIPPGA----K------AKAHLHEEHETAIYVLSGEAHTWYGNRLE--EHAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred eEEEEeeCCCc----c------ccccccccccEEEEEEeceeeeeecccee--eeEEecCCCeEEcCCCCCCcccccCCC
Confidence 56889998774 1 26799987 78999999999888863322 357899999999999999986543444
Q ss_pred cEEEE
Q 029096 152 YIKAM 156 (199)
Q Consensus 152 ~~~al 156 (199)
...|+
T Consensus 115 p~s~v 119 (142)
T COG4101 115 PLSAV 119 (142)
T ss_pred CeEEE
Confidence 45555
No 29
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=97.84 E-value=5.7e-05 Score=71.15 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=50.2
Q ss_pred ccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCC
Q 029096 95 FEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (199)
Q Consensus 95 ~~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~ 162 (199)
...|.|. .+|.+||++|++.+.+. ++ .+.+++||.+.+|+|+.|+|....+..++.+-++.++
T Consensus 389 ~~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 389 LSLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred cCccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 3556654 36788999999999995 44 4789999999999999999997766667777776643
No 30
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.84 E-value=3.6e-05 Score=68.06 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=45.1
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 94 f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
...+|.|.+-|+.|+++|++.|.+. |+ .+.+.+||+++||+|+.|.+...++
T Consensus 38 m~~~HwH~e~Ei~yv~~G~~~~~i~---g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 38 MPTSHWHGQVEVNVPFDGDVEYLIN---NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred CCCCCccccEEEEEecCCcEEEEEC---CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 3689999999999999999999996 44 4689999999999999998766444
No 31
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.81 E-value=5e-05 Score=65.30 Aligned_cols=52 Identities=25% Similarity=0.355 Sum_probs=45.2
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~ 151 (199)
+..|.|+.-|+.|+++|+|.+.+. ++ ...+.+||+++||+|..|.+...++.
T Consensus 31 ~~~H~h~~~~l~~v~~G~~~~~i~---~~--~~~l~~g~l~li~~~~~H~~~~~~~~ 82 (282)
T PRK13502 31 FAEHTHEFCELVMVWRGNGLHVLN---ER--PYRITRGDLFYIRAEDKHSYTSVNDL 82 (282)
T ss_pred CCccccceEEEEEEecCcEEEEEC---CE--EEeecCCcEEEECCCCcccccccCCc
Confidence 678999999999999999999995 43 46899999999999999998765543
No 32
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.74 E-value=7.5e-05 Score=64.10 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=47.8
Q ss_pred ccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEE
Q 029096 95 FEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMR 157 (199)
Q Consensus 95 ~~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alR 157 (199)
...|.|+ .-|+.|+++|++.+.+. ++ ...+++||+++||+|+.|.+...++....++.
T Consensus 36 ~~~H~H~~~~~l~~~~~G~~~~~~~---~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~ 94 (287)
T TIGR02297 36 MPVHFHDRYYQLHYLTEGSIALQLD---EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT 94 (287)
T ss_pred CCCcccccceeEEEEeeCceEEEEC---CE--EEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence 5789998 69999999999999985 43 46899999999999999998776655444554
No 33
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.72 E-value=9.2e-05 Score=64.62 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=36.9
Q ss_pred cccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeee
Q 029096 98 HLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 98 H~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
++++.+|+.||++|+..|.+. ++ ...+.+||.|+||+|..|-|.
T Consensus 171 wtl~~dEi~YVLEGe~~l~Id---G~--t~~l~pGDvlfIPkGs~~hf~ 214 (233)
T PRK15457 171 WTLNYDEIDMVLEGELHVRHE---GE--TMIAKAGDVMFIPKGSSIEFG 214 (233)
T ss_pred eeccceEEEEEEEeEEEEEEC---CE--EEEeCCCcEEEECCCCeEEec
Confidence 445679999999999999994 44 478999999999999995553
No 34
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.68 E-value=4.5e-05 Score=69.07 Aligned_cols=51 Identities=25% Similarity=0.468 Sum_probs=44.6
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 93 ~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
.--++|.|+..-+|||++|.|.|.+- |++ ++.+++||+|+.|+++.|-.-.
T Consensus 103 EvApsHrHsqsAlRFvveG~Ga~T~V--dGe--r~~M~~GDfilTP~w~wHdHgn 153 (351)
T COG3435 103 EVAPSHRHNQSALRFVVEGKGAYTVV--DGE--RTPMEAGDFILTPAWTWHDHGN 153 (351)
T ss_pred ccCCcccccccceEEEEeccceeEee--cCc--eeeccCCCEEEccCceeccCCC
Confidence 34679999999999999999999997 444 6899999999999999997643
No 35
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.64 E-value=0.00035 Score=66.45 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=47.7
Q ss_pred cccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 96 EEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 96 ~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
..|.|. .+|..||++|++.+.+. |+ ...+.+||.|.+|+|+.|++....+..+..|-+..+
T Consensus 399 ~~~~H~~~~E~~~VlsG~~~v~id---g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g 460 (478)
T PRK15460 399 SVQMHHHRAEHWVVVAGTAKVTID---GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG 460 (478)
T ss_pred CcCCCCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 345553 36999999999999995 55 478999999999999999998766656666655443
No 36
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.58 E-value=0.00022 Score=59.01 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=51.3
Q ss_pred cccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCC--CceeeeecCCCcEEEEEEecCCCc
Q 029096 96 EEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHRFTLDTDNYIKAMRLFVGDPV 164 (199)
Q Consensus 96 ~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG--~~HrF~~~~~~~~~alRlF~~~~g 164 (199)
.-|.|+ +||.+|||+|++.+.+. +. +..+++||.+-.||| +-|-|....+.-++.|-+-+.++.
T Consensus 57 ~~H~Hs~edEfv~ILeGE~~l~~d---~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r~~~ 123 (161)
T COG3837 57 LRHWHSAEDEFVYILEGEGTLRED---GG--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTREPD 123 (161)
T ss_pred cccccccCceEEEEEcCceEEEEC---Ce--eEEecCCceeeccCCCcceeEEeecCCceEEEEEecccccc
Confidence 456675 48999999999998885 32 467999999999999 999998877777777766665543
No 37
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=97.55 E-value=0.00054 Score=56.02 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=56.2
Q ss_pred hcCCCeeeeEEECCCCCCChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeee
Q 029096 68 DRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 68 e~gY~~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
..+|+. -.++|.|.. -+..|.|.. .|.++|++|+|.+.+. |+. ..+.+||.+.||+|..|+..
T Consensus 60 ~~~~~v-kri~V~pG~----------~lSlq~H~~R~E~W~Vv~G~a~v~~~---~~~--~~~~~g~sv~Ip~g~~H~i~ 123 (151)
T PF01050_consen 60 GEGYKV-KRITVNPGK----------RLSLQYHHHRSEHWTVVSGTAEVTLD---DEE--FTLKEGDSVYIPRGAKHRIE 123 (151)
T ss_pred cCCEEE-EEEEEcCCC----------ccceeeecccccEEEEEeCeEEEEEC---CEE--EEEcCCCEEEECCCCEEEEE
Confidence 445653 566677664 367888876 8999999999999995 543 57999999999999999997
Q ss_pred ecCCCcEEEEEE
Q 029096 147 LDTDNYIKAMRL 158 (199)
Q Consensus 147 ~~~~~~~~alRl 158 (199)
...+..+..|-+
T Consensus 124 n~g~~~L~~IEV 135 (151)
T PF01050_consen 124 NPGKTPLEIIEV 135 (151)
T ss_pred CCCCcCcEEEEE
Confidence 644433444443
No 38
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=97.55 E-value=0.00047 Score=59.03 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=56.8
Q ss_pred CeeeeEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCC
Q 029096 72 SYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 72 ~~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~ 151 (199)
...-++.|.|.. -+..|+|...|+.+||+|+ | .+.++ ...+||+|.+|+|..|.++.+.+.
T Consensus 127 ~~v~Ll~i~pG~----------~~p~H~H~G~E~tlVLeG~--f--~de~g-----~y~~Gd~i~~p~~~~H~p~a~~~~ 187 (215)
T TIGR02451 127 ARVRLLYIEAGQ----------SIPQHTHKGFELTLVLHGA--F--SDETG-----VYGVGDFEEADGSVQHQPRTVSGG 187 (215)
T ss_pred cEEEEEEECCCC----------ccCCCcCCCcEEEEEEEEE--E--EcCCC-----ccCCCeEEECCCCCCcCcccCCCC
Confidence 456777777764 2789999999999999999 3 22332 478999999999999999998877
Q ss_pred cEEEEEEecCC
Q 029096 152 YIKAMRLFVGD 162 (199)
Q Consensus 152 ~~~alRlF~~~ 162 (199)
.+.++-+...+
T Consensus 188 ~Cicl~v~dap 198 (215)
T TIGR02451 188 DCLCLAVLDAP 198 (215)
T ss_pred CeEEEEEecCC
Confidence 77887665554
No 39
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.52 E-value=0.00015 Score=53.40 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=42.9
Q ss_pred eeeeEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 73 YMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 73 ~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
..-++.+.|.. -++.|.|...|-.|||+|+... .++ .+.+||++..|+|+.|.+...++
T Consensus 25 ~~~L~r~~pG~----------~~p~H~H~g~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 25 RVSLLRLEPGA----------SLPRHRHPGGEEILVLEGELSD----GDG-----RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp EEEEEEE-TTE----------EEEEEEESS-EEEEEEECEEEE----TTC-----EEETTEEEEE-TTEEEEEEESSC
T ss_pred EEEEEEECCCC----------CcCccCCCCcEEEEEEEEEEEE----CCc-----cCCCCeEEEeCCCCccccCcCCC
Confidence 45667777653 4889999998888999999662 233 25899999999999999996433
No 40
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.52 E-value=0.00028 Score=64.57 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=45.9
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCc
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~ 152 (199)
-..|.|...-++||++|+|.|.+- +++ ++.+++||+|++|++..|....+.+..
T Consensus 94 ~~~HRht~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~ 147 (335)
T TIGR02272 94 APSHRHTQSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEP 147 (335)
T ss_pred CCccccccceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCc
Confidence 568999999999999999987774 455 689999999999999999987655543
No 41
>PLN00212 glutelin; Provisional
Probab=97.49 E-value=0.001 Score=63.74 Aligned_cols=69 Identities=9% Similarity=0.192 Sum_probs=56.6
Q ss_pred ccccccccCc-ceEEEEEeceEEEEEEeCC-CcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCC
Q 029096 93 NFFEEHLHTD-EEIRYCVAGSGYFDVRDRN-EKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (199)
Q Consensus 93 ~f~~eH~H~d-dEvr~il~G~g~f~v~~~~-d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~ 162 (199)
..+..|+|.. .||.||++|+|.+.|-+.+ ..++.=.+++||+++||+|-.|--.++.+. +..+-+.+..
T Consensus 359 am~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg-fe~v~F~tna 429 (493)
T PLN00212 359 ALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG-CQYIAFKTNA 429 (493)
T ss_pred cccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc-eEEEEeecCC
Confidence 4588999987 8999999999999998655 567777899999999999999977776544 6666665554
No 42
>PRK11171 hypothetical protein; Provisional
Probab=97.45 E-value=0.00056 Score=60.13 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=40.6
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEE
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAM 156 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~al 156 (199)
..+|+.||++|++.+.+. ++ ...+++||.+.+|+|+.|+|....+...+.+
T Consensus 82 ~~eE~~~VlsG~l~v~~~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 82 GAETFLFVVEGEITLTLE---GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CceEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 458999999999999985 44 4789999999999999999975444333433
No 43
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=97.32 E-value=0.0011 Score=58.23 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=46.3
Q ss_pred ccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEE---EEEecCCCc
Q 029096 97 EHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKA---MRLFVGDPV 164 (199)
Q Consensus 97 eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~a---lRlF~~~~g 164 (199)
.|.|.. +|..||++|++.+.+. +++ ..+++||.+.+|+|+.|+|....+...+. .+-|...+|
T Consensus 74 ~~~~~g~ee~iyVl~G~l~v~~~---g~~--~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~~g 140 (260)
T TIGR03214 74 GFGGEGIETFLFVISGEVNVTAE---GET--HELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPVEG 140 (260)
T ss_pred CCCCCceEEEEEEEeCEEEEEEC---CEE--EEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEcCC
Confidence 455666 8999999999998874 443 58999999999999999997655443333 334544444
No 44
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.27 E-value=0.00072 Score=48.55 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=34.3
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeec
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~ 148 (199)
+|..|||+|++.+... ++. ++.+.+||++++|+|..-.++..
T Consensus 26 ~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~v~ 67 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWEVR 67 (74)
T ss_dssp EEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEEEE
T ss_pred CEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEEEC
Confidence 9999999999888774 555 47899999999999997766653
No 45
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=96.98 E-value=0.0063 Score=55.75 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=60.1
Q ss_pred hHHHHHHHH---hcCCCeeeeEEECCCCCCCh----HHHHh-----ccccccccCcceEEEEEeceEEEEEEeCCCcEEE
Q 029096 59 DEELKKIRE---DRGYSYMDFCEVCPEKLPNY----EEKIK-----NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIR 126 (199)
Q Consensus 59 ~~~l~~l~~---e~gY~~~Dvv~i~p~~~p~~----e~~~~-----~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~r 126 (199)
.+.|+++.+ ..+|...-+--++|.+-+.. ...+. .--..|.|+...|++|++|+|+-.|. ++ +
T Consensus 215 ~~aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig---~~--~ 289 (335)
T TIGR02272 215 REALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIG---DA--V 289 (335)
T ss_pred HHHHHHHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEEC---CE--E
Confidence 455665543 23554444556677643432 22222 12457999999999999999999995 44 6
Q ss_pred EEEecCCEEEeCCCCceeeeecCC
Q 029096 127 IWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 127 i~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
+..++||+++||+...|.+..+++
T Consensus 290 ~~W~~gD~f~vPsW~~~~h~a~~d 313 (335)
T TIGR02272 290 FRFSPKDVFVVPSWHPVRFEASDD 313 (335)
T ss_pred EEecCCCEEEECCCCcEecccCCC
Confidence 889999999999998888876543
No 46
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.86 E-value=0.0055 Score=50.45 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=39.7
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 96 ~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
..|.-+.+|.+|.++|.+...|.+ +++.-.|.++.||+..+|++++|...-.++
T Consensus 47 DyHine~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 47 DYHINETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp SEEE-SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred ccccCCcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 678888899999999999999985 466678999999999999999998765443
No 47
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.77 E-value=0.0068 Score=48.11 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=35.8
Q ss_pred cccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCC-EEEeCCCCceeeeecCCC
Q 029096 96 EEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGG-MIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 96 ~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GD-lI~vPaG~~HrF~~~~~~ 151 (199)
.+|.|.. .|.+++++|+..+.+.+...+ -.+.+...+ .|.||+|+.|.+..-+.+
T Consensus 47 G~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~ 103 (131)
T PF05523_consen 47 GWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED 103 (131)
T ss_dssp EEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT
T ss_pred cccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC
Confidence 5899976 899999999999999855443 456666655 799999999999754444
No 48
>PF12852 Cupin_6: Cupin
Probab=96.59 E-value=0.0049 Score=50.34 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=35.1
Q ss_pred eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 104 Evr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
-..+|++|++++.+.+. +. .+.+++||++++|.|..|++.-++.
T Consensus 37 ~fh~V~~G~~~l~~~~~-~~--~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPGG-GE--PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEEEEECCeEEEEEcCC-CC--eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 46788999999998632 23 5899999999999999999954444
No 49
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.54 E-value=0.0095 Score=49.09 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=32.1
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeec
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLD 148 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~ 148 (199)
+.||+-||++|+. .|. .+++ .+..++||+|.||+|..=.|...
T Consensus 94 ~YDEi~~VlEG~L--~i~-~~G~--~~~A~~GDvi~iPkGs~I~fst~ 136 (152)
T PF06249_consen 94 TYDEIKYVLEGTL--EIS-IDGQ--TVTAKPGDVIFIPKGSTITFSTP 136 (152)
T ss_dssp SSEEEEEEEEEEE--EEE-ETTE--EEEEETT-EEEE-TT-EEEEEEE
T ss_pred ecceEEEEEEeEE--EEE-ECCE--EEEEcCCcEEEECCCCEEEEecC
Confidence 4699999999874 555 3466 47899999999999999999764
No 50
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.22 E-value=0.0096 Score=47.03 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=36.9
Q ss_pred cccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 96 EEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 96 ~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
.+|.+- .+|..+||+|.+.+.-. +++ .|.+++||++++|+|..=.-+.
T Consensus 56 ~~r~~y~~~E~chil~G~v~~T~d--~Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 56 KFRVTYDEDEFCHILEGRVEVTPD--GGE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred cceEEcccceEEEEEeeEEEEECC--CCe--EEEEcCCCEEEECCCCeEEEEE
Confidence 344443 48999999999998875 455 4789999999999998764443
No 51
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.21 E-value=0.013 Score=50.65 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=41.9
Q ss_pred cccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 94 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 94 f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
+...|-...-++.++++|+|.+.+. ++ +..+++||+|++|+|+.|.+...++
T Consensus 41 ~~r~~~~~~~~i~~~~~G~~~~~~~---~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 41 IDRPLGMKGYILNLTIRGQGVIFNG---GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred eecCCCccceEEEEEEeccEEEecC---Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 3456666677899999999999874 43 4789999999999999998865443
No 52
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.58 E-value=0.028 Score=53.13 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=36.7
Q ss_pred cCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEe
Q 029096 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLF 159 (199)
Q Consensus 100 H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF 159 (199)
.+.||+.|+-+|++.+.-. - + .+.+++||+++||.||.+|..+....+.-++-.|
T Consensus 144 aDGD~Li~~q~G~l~l~Te-~-G---~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~ 198 (424)
T PF04209_consen 144 ADGDELIFPQQGSLRLETE-F-G---RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENF 198 (424)
T ss_dssp SSEEEEEEEEES-EEEEET-T-E---EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEE
T ss_pred CCCCEEEEEEECCEEEEec-C-e---eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcC
Confidence 3559999999999988764 2 2 4889999999999999999999844344444433
No 53
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.56 E-value=0.049 Score=45.38 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=56.8
Q ss_pred eeeeEEECCCCCC---ChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecC
Q 029096 73 YMDFCEVCPEKLP---NYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 73 ~~Dvv~i~p~~~p---~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
..|+|+....+ + .+-+....+|+|-+ ..||+-||++|+....+. |+ .+..++||+|.||.|-.=-|++..
T Consensus 88 ~tdLvt~~~g~-~l~aG~m~~~~~tf~wtl-~yDe~d~VlEGrL~V~~~---g~--tv~a~aGDvifiPKgssIefst~g 160 (176)
T COG4766 88 TTDLVTEQEGS-RLGAGLMEMKNTTFPWTL-NYDEIDYVLEGRLHVRID---GR--TVIAGAGDVIFIPKGSSIEFSTTG 160 (176)
T ss_pred eeceeecccCC-ccccceeeeccccCccee-cccceeEEEeeeEEEEEc---CC--eEecCCCcEEEecCCCeEEEeccc
Confidence 34677766432 2 24555557788754 568999999998766664 43 478999999999999999998754
Q ss_pred CCcEEEEEEecCCCcee
Q 029096 150 DNYIKAMRLFVGDPVWT 166 (199)
Q Consensus 150 ~~~~~alRlF~~~~gW~ 166 (199)
. .+.+ +++=+..|.
T Consensus 161 e--a~fl-yvtyPanWq 174 (176)
T COG4766 161 E--AKFL-YVTYPANWQ 174 (176)
T ss_pred e--EEEE-EEEcccccc
Confidence 4 3333 334444464
No 54
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=95.06 E-value=0.045 Score=40.55 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=18.0
Q ss_pred CCcEEEEEEecCCEEEeCCCCceeee
Q 029096 121 NEKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 121 ~d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
+-+.+++..++||+|++|+|.+|+.-
T Consensus 77 gi~~~~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 77 GIPVYRFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp TS--EEEEEETT-EEEE-TT-EEEEE
T ss_pred CcccccceECCCCEEEECCCceEEEE
Confidence 44567889999999999999999854
No 55
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.81 E-value=0.1 Score=49.41 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=42.8
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEec
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFV 160 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~ 160 (199)
+.|++.++-+|++.+.-+ -+ .+.+++||+++||.||.++.++....+.-++-.|.
T Consensus 147 DGD~Livpq~G~l~i~TE-fG----~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 147 DGDFLIVPQQGALLITTE-FG----RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred CCCEEEEEEeCcEEEEEe-cc----ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 459999999999998876 32 58999999999999999999986443343444443
No 56
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.53 E-value=0.086 Score=50.04 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=38.2
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecC
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
+.|++.++-+|++.+.-+ -+ .+.+++||+++||.||.++..+.+
T Consensus 153 DGD~Livpq~G~l~i~TE-fG----~L~v~pgei~VIPRG~~frv~l~~ 196 (438)
T PRK05341 153 DGELLIVPQQGRLRLATE-LG----VLDVEPGEIAVIPRGVKFRVELPD 196 (438)
T ss_pred CCCEEEEEEeCCEEEEEe-cc----ceEecCCCEEEEcCccEEEEecCC
Confidence 459999999999998886 32 589999999999999999999744
No 57
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=93.85 E-value=0.14 Score=45.00 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=45.7
Q ss_pred ccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 99 LHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 99 ~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
+|--|--.|||+|.|.|-+. ..| |.|++||+|-+=|-.+.+...+..+.++-| |+++
T Consensus 200 tHvmEHGlyvLeGk~vYrLn---~dw--v~V~aGD~mwm~A~cpQacyagG~g~frYL-lyKD 256 (264)
T COG3257 200 THVMEHGLYVLEGKGVYRLN---NNW--VPVEAGDYIWMGAYCPQACYAGGRGAFRYL-LYKD 256 (264)
T ss_pred hhhhhcceEEEecceEEeec---Cce--EEeecccEEEeeccChhhhccCCCCceEEE-EEec
Confidence 45556679999999999995 567 679999999999999998877666677766 5655
No 58
>PLN02658 homogentisate 1,2-dioxygenase
Probab=93.59 E-value=0.26 Score=46.79 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=41.7
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC-CcEEEEEEe
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD-NYIKAMRLF 159 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~-~~~~alRlF 159 (199)
+.|++.++-+|++.+.-+ -+ .+.+++||+++||.||.++..+.+. .+.-.+-.|
T Consensus 146 DGD~Livpq~G~l~i~TE-fG----~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 146 DGDFLIVPQQGRLWIKTE-LG----KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred CCCEEEEEEeCCEEEEEe-cc----ceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 459999999999998876 22 4889999999999999999997443 333333334
No 59
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.34 E-value=0.23 Score=42.98 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=36.7
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEE
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAM 156 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~al 156 (199)
--+.++++|++.+.+. ++ .+.+.+||++++|++.+|.+....+.....+
T Consensus 72 ~~l~~~~~G~~~~~~~---g~--~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l 120 (302)
T PRK09685 72 FFTVFQLSGHAIIEQD---DR--QVQLAAGDITLIDASRPCSIYPQGLSEQISL 120 (302)
T ss_pred EEEEEEecceEEEEEC---Ce--EEEEcCCCEEEEECCCCcEeecCCCceeEEE
Confidence 3466779999998885 33 4689999999999999998876544333333
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=93.10 E-value=0.25 Score=40.87 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=42.3
Q ss_pred cccccccCcceEEEEEeceEEEEEEeC---------C--------------------------CcEEEEEEecCCEEEeC
Q 029096 94 FFEEHLHTDEEIRYCVAGSGYFDVRDR---------N--------------------------EKWIRIWVKKGGMIVLP 138 (199)
Q Consensus 94 f~~eH~H~ddEvr~il~G~g~f~v~~~---------~--------------------------d~~~ri~~~~GDlI~vP 138 (199)
.-..|....+-+..+|.|+=.|.+-.. . -..+.+.+++||+|.||
T Consensus 143 ~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~LfiP 222 (251)
T PF13621_consen 143 FTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDVLFIP 222 (251)
T ss_dssp EEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-EEEE-
T ss_pred eeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeEEEEC
Confidence 345566556777788888877776311 0 14679999999999999
Q ss_pred CCCceeeeec-CCC-cEEEEEEecC
Q 029096 139 AGCYHRFTLD-TDN-YIKAMRLFVG 161 (199)
Q Consensus 139 aG~~HrF~~~-~~~-~~~alRlF~~ 161 (199)
+|-.|..... +++ .+..=..|..
T Consensus 223 ~gWwH~V~~~~~~~~sisvn~w~~~ 247 (251)
T PF13621_consen 223 PGWWHQVENLSDDDLSISVNYWFRT 247 (251)
T ss_dssp TT-EEEEEESTTSSCEEEEEEEEES
T ss_pred CCCeEEEEEcCCCCeEEEEEEEecc
Confidence 9999999876 343 4444444443
No 61
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=92.84 E-value=0.16 Score=44.51 Aligned_cols=66 Identities=27% Similarity=0.547 Sum_probs=50.0
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCce---eeeecC---------CCcEEEEEEecCC
Q 029096 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYH---RFTLDT---------DNYIKAMRLFVGD 162 (199)
Q Consensus 96 ~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~H---rF~~~~---------~~~~~alRlF~~~ 162 (199)
..|.-+.+|.+|-..|++...|-+. ++.-.|.++.||+..+|+.++| ||..+- +..+-++|++.+.
T Consensus 47 dyHieegeE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~yvg~ 124 (279)
T KOG3995|consen 47 DYHIEEGEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGD 124 (279)
T ss_pred ccccCCcchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEEEecc
Confidence 4677788999999999999999854 4455799999999999999999 453221 1234566766543
No 62
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=92.50 E-value=0.51 Score=36.53 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=39.1
Q ss_pred eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 104 Evr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
=+.+.++|++.+..+ +. ++.+.+||+++++++-+.++...++.....+++
T Consensus 57 ~l~~~~~G~~~~~~~---g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~i 106 (172)
T PF14525_consen 57 LLVLPLSGSARIEQG---GR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRI 106 (172)
T ss_pred EEEEEccCCEEEEEC---CE--EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEE
Confidence 455666777776664 33 589999999999999999999887777677766
No 63
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.96 E-value=0.28 Score=44.99 Aligned_cols=99 Identities=27% Similarity=0.427 Sum_probs=68.5
Q ss_pred ChHHHHHHHHhc------CCCeeeeEEECCCC----CCChHHHH----hcc-ccccccCcceEEEEEeceEEEEEEeCCC
Q 029096 58 TDEELKKIREDR------GYSYMDFCEVCPEK----LPNYEEKI----KNF-FEEHLHTDEEIRYCVAGSGYFDVRDRNE 122 (199)
Q Consensus 58 ~~~~l~~l~~e~------gY~~~Dvv~i~p~~----~p~~e~~~----~~f-~~eH~H~ddEvr~il~G~g~f~v~~~~d 122 (199)
+.+.|++|.... ||+-+ -++|.+ ||.....+ ..| -+.|.|.+.-|+-|++|+|+-.|. +
T Consensus 225 t~eAL~~la~~e~~dp~dG~~~r---yvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig---~ 298 (351)
T COG3435 225 TREALERLARLEEPDPFDGYKMR---YVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIG---G 298 (351)
T ss_pred HHHHHHHHHhccCCCCCCcceEE---EecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEEC---C
Confidence 567889998876 65432 233331 23333333 234 458999999999999999999996 4
Q ss_pred cEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCcee
Q 029096 123 KWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWT 166 (199)
Q Consensus 123 ~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~gW~ 166 (199)
+ +....+||+++||.=-.|.+..++++ .+|--|++-|.-.
T Consensus 299 ~--rf~~~~~D~fvVPsW~~~~~~~gs~d--a~LFsfsD~PV~e 338 (351)
T COG3435 299 E--RFDWSAGDIFVVPSWAWHEHVNGSED--AVLFSFSDRPVME 338 (351)
T ss_pred E--EeeccCCCEEEccCcceeecccCCcc--eEEEecCCcHHHH
Confidence 3 67899999999999999999887543 3444456655433
No 64
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=91.59 E-value=2 Score=34.52 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=47.9
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCC
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~ 162 (199)
..-|..|+++|+|..-.. .++++ ..++||.+..+-+.=.|.....+ .+.++=.|.++
T Consensus 54 nHlEAvyci~G~Gev~~~-~~G~~--~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFnPp 110 (126)
T PF06339_consen 54 NHLEAVYCIEGEGEVEDL-DTGEV--HPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFNPP 110 (126)
T ss_pred CceEEEEEEeceEEEEEc-cCCcE--EEcCCCeEEecCCCccEEEEecC--CEEEEEEcCCC
Confidence 447999999999998876 35665 46899999999999999999887 47888888876
No 65
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=91.29 E-value=0.32 Score=43.09 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=29.9
Q ss_pred cccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 96 EEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 96 ~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
+.|+|.-++-.||++|....+=. +--...+.+|.+...|+|..|.--.
T Consensus 50 pph~H~~~~~~~Vi~G~~~~~~~----~a~~~~l~~Gsy~~~PaG~~h~~~~ 97 (251)
T PF14499_consen 50 PPHIHNADYRGTVISGELHNGDP----KAAAMWLPAGSYWFQPAGEPHITAA 97 (251)
T ss_dssp --BEESS-EEEEEEESEEEETTE----E-----E-TTEEEEE-TT-EEEETT
T ss_pred CCcceeeeEEEEEEEeEEEcCCC----cccceecCCCceEeccCCCceeeec
Confidence 69999999999999998665422 2123469999999999997776543
No 66
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=90.98 E-value=0.78 Score=40.16 Aligned_cols=26 Identities=31% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEecCCEEEeCCCCceeeeecCCC
Q 029096 126 RIWVKKGGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~~HrF~~~~~~ 151 (199)
.|.+.||.-|.||+|++|+|-.....
T Consensus 155 ~l~L~PGESiTL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 155 QLRLNPGESITLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence 57899999999999999999986554
No 67
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=90.60 E-value=2 Score=35.87 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=41.3
Q ss_pred HhccccccccCcceEEEEEeceEEEEEEe--CC----CcEEEEEEecCC--EEEeCCCCceeeeecCCC
Q 029096 91 IKNFFEEHLHTDEEIRYCVAGSGYFDVRD--RN----EKWIRIWVKKGG--MIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 91 ~~~f~~eH~H~ddEvr~il~G~g~f~v~~--~~----d~~~ri~~~~GD--lI~vPaG~~HrF~~~~~~ 151 (199)
++-.|+...|....+..++.|+.+-.+-| ++ ++|..+.+.+++ .|.||+|+.|-|..-+++
T Consensus 56 RGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 56 RGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp EEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred EEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 33333333444468888999988655443 32 789999998887 699999999999765554
No 68
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=90.36 E-value=1.2 Score=40.12 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=37.4
Q ss_pred ccccccCcceEEEEEeceEEEEEEeC----------------C--CcEEEEEEecCCEEEeCCCCceeeeecC
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDR----------------N--EKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~----------------~--d~~~ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
+..|+=..|=+.+-++|+=...|... + .....+.+++||+|.||+|+.|..++..
T Consensus 128 ~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 128 FGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp SECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred ccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 66776666777777889888888751 0 2245799999999999999999998766
No 69
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=90.28 E-value=1.8 Score=37.95 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=56.4
Q ss_pred hHHHHhccccccccCc--ceEEEEEeceEEEEEEeCCCcEE-E-EEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCC
Q 029096 87 YEEKIKNFFEEHLHTD--EEIRYCVAGSGYFDVRDRNEKWI-R-IWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (199)
Q Consensus 87 ~e~~~~~f~~eH~H~d--dEvr~il~G~g~f~v~~~~d~~~-r-i~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~ 162 (199)
.+.+.+.|...|.|.. -|..-|++|+..|.+-+.++..+ + .....+.--+||++..|+....+++--.-+.||..+
T Consensus 16 ~~~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy~~~ 95 (287)
T PRK12335 16 KDTLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFYCKP 95 (287)
T ss_pred hhhchHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEEEcc
Confidence 4556689999999963 79999999999999875554322 2 334444555799999999998776655666777665
Q ss_pred Cc
Q 029096 163 PV 164 (199)
Q Consensus 163 ~g 164 (199)
..
T Consensus 96 ~~ 97 (287)
T PRK12335 96 ED 97 (287)
T ss_pred hh
Confidence 43
No 70
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=89.17 E-value=0.55 Score=40.54 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=41.7
Q ss_pred ccccccccCcceEEEEEeceEEEEEEeC------------------CC------cEEEEEEecCCEEEeCCCCceeeeec
Q 029096 93 NFFEEHLHTDEEIRYCVAGSGYFDVRDR------------------NE------KWIRIWVKKGGMIVLPAGCYHRFTLD 148 (199)
Q Consensus 93 ~f~~eH~H~ddEvr~il~G~g~f~v~~~------------------~d------~~~ri~~~~GDlI~vPaG~~HrF~~~ 148 (199)
+.-+.|.|.-...=.|-.|.|.+-++-- |+ -|-.+.++||.-|.+|+|++|||-..
T Consensus 97 QvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~~HsFwae 176 (225)
T COG3822 97 QVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGLYHSFWAE 176 (225)
T ss_pred CcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCceeeeeec
Confidence 4467899975444456677777766510 11 12368899999999999999999886
Q ss_pred CCC
Q 029096 149 TDN 151 (199)
Q Consensus 149 ~~~ 151 (199)
...
T Consensus 177 ~g~ 179 (225)
T COG3822 177 EGG 179 (225)
T ss_pred CCc
Confidence 664
No 71
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.14 E-value=0.95 Score=42.45 Aligned_cols=55 Identities=22% Similarity=0.426 Sum_probs=44.4
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGD 162 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~ 162 (199)
--|..+++|+|+.... .++ .+.+++||++.|||...=.|..++++ ++..|-|...
T Consensus 354 ~SIllv~~G~g~l~~~-t~~---~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~yrAf~~~ 408 (411)
T KOG2757|consen 354 PSILLVLKGSGILKTD-TDS---KILVNRGDVLFIPANHPIHLSSSSDP-FLGYRAFSNS 408 (411)
T ss_pred ceEEEEEecceEEecC-CCC---ceeeccCcEEEEcCCCCceeeccCcc-eeeeeccccc
Confidence 5688999999998875 233 47899999999999999988887766 7888877654
No 72
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=89.10 E-value=0.73 Score=34.34 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=42.8
Q ss_pred CCeeeeEEECCCCCCChHHHHhccccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 71 YSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 71 Y~~~Dvv~i~p~~~p~~e~~~~~f~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
+-..-.+.|.|... | -..+...+--++||+.|.....|+ +. ...+.+||...||+|-.=-+....+
T Consensus 11 ~fa~G~l~Lpp~~~-----K----~~k~s~~~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~ 76 (85)
T PF11699_consen 11 FFASGMLELPPGGE-----K----PPKNSRDNTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGN 76 (85)
T ss_dssp S-EEEEEEE-TCCC-----E----EEEE--SEEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred CceeEEEEeCCCCc-----c----CCcccCCcEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCC
Confidence 45567777777641 1 134566678899999999999997 32 4679999999999997766654333
No 73
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=88.78 E-value=1.5 Score=38.73 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=34.8
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
+-+.||++|+....+. ++. -.+++|++..||+|..|.++...
T Consensus 84 e~~lfVv~Ge~tv~~~---G~t--h~l~eggyaylPpgs~~~~~N~~ 125 (264)
T COG3257 84 ETFLFVVSGEITVKAE---GKT--HALREGGYAYLPPGSGWTLRNAQ 125 (264)
T ss_pred eEEEEEEeeeEEEEEc---CeE--EEeccCCeEEeCCCCcceEeecc
Confidence 5678999999888875 443 57999999999999999998543
No 74
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=88.56 E-value=0.69 Score=40.94 Aligned_cols=47 Identities=30% Similarity=0.545 Sum_probs=29.9
Q ss_pred ccccccCc---------ceEEEEE-eceEEEEEE-----eCCCcEEEEEEecCCEEEeCCCCce
Q 029096 95 FEEHLHTD---------EEIRYCV-AGSGYFDVR-----DRNEKWIRIWVKKGGMIVLPAGCYH 143 (199)
Q Consensus 95 ~~eH~H~d---------dEvr~il-~G~g~f~v~-----~~~d~~~ri~~~~GDlI~vPaG~~H 143 (199)
|+.|.|+. +|++|+- ...-=|.++ +.+.. --+.++-||.++||.| ||
T Consensus 166 yPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d-~~~~V~~~d~V~iP~g-yH 227 (261)
T PF04962_consen 166 YPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLD-EHYVVRNGDAVLIPSG-YH 227 (261)
T ss_dssp -SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSE-EEEEEETTEEEEESTT-B-
T ss_pred cCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCc-EEEEEECCCEEEeCCC-CC
Confidence 89999998 8999984 322224441 11111 2478999999999999 77
No 75
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=88.35 E-value=4.2 Score=34.01 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=42.0
Q ss_pred ccccc---CcceEEEEEeceEEEEEEeC--C----CcEEEEEEec--CCEEEeCCCCceeeeecCCC
Q 029096 96 EEHLH---TDEEIRYCVAGSGYFDVRDR--N----EKWIRIWVKK--GGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 96 ~eH~H---~ddEvr~il~G~g~f~v~~~--~----d~~~ri~~~~--GDlI~vPaG~~HrF~~~~~~ 151 (199)
-.|.| .......++.|+.+-.+-|. + ++|..+.+.+ +-.|.||+|.-|-|..-+++
T Consensus 58 GlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~ 124 (176)
T TIGR01221 58 GLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 (176)
T ss_pred EEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence 45554 57899999999987555433 2 5788888877 55999999999999764443
No 76
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=88.32 E-value=3 Score=32.19 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=41.0
Q ss_pred ccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCC--CceeeeecCC-CcEEEEEEe
Q 029096 95 FEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHRFTLDTD-NYIKAMRLF 159 (199)
Q Consensus 95 ~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG--~~HrF~~~~~-~~~~alRlF 159 (199)
|..|.|.+ +-|.|+++|+.... |.-+. +-.+++||+-.+=|| +.|-=....+ ..+..+.|+
T Consensus 42 f~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW 106 (107)
T PF02678_consen 42 FPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW 106 (107)
T ss_dssp EEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred CCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence 79999998 78899999987543 33333 467999999666554 7785444443 556766654
No 77
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.67 E-value=2.5 Score=39.71 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=38.6
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCC
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDN 151 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~ 151 (199)
+.|++.++-.|+..|.-. -+ .+.+++||+.+||.||.-|..+-++.
T Consensus 145 Dge~Livpq~G~l~l~te-~G----~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLKTE-LG----VLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEEEe-ec----eEEecCCcEEEeeCCceEEEEecCCc
Confidence 349999999999999876 22 58999999999999999999875554
No 78
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=82.77 E-value=0.65 Score=41.36 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=18.4
Q ss_pred EEEEecCCEEEeCCCCceee
Q 029096 126 RIWVKKGGMIVLPAGCYHRF 145 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~~HrF 145 (199)
.+.+++||.|.||||+.|-.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 68999999999999999973
No 79
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=82.19 E-value=0.94 Score=41.39 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEecCCEEEeCCCCceeeeec
Q 029096 126 RIWVKKGGMIVLPAGCYHRFTLD 148 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~~HrF~~~ 148 (199)
+|.++|||.+.|||||.|-.--+
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred EEecCCCCEEEecCCCceeeccc
Confidence 79999999999999999976543
No 80
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=80.83 E-value=1.9 Score=32.01 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=18.1
Q ss_pred cEEEEEEecCCEEEeCCCCceeeee
Q 029096 123 KWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 123 ~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
..+.+..++||||+-|+-+.|.-..
T Consensus 64 ~~~~~~p~~G~lvlFPs~l~H~v~p 88 (101)
T PF13759_consen 64 PYYIVEPEEGDLVLFPSWLWHGVPP 88 (101)
T ss_dssp SEEEE---TTEEEEEETTSEEEE--
T ss_pred ceEEeCCCCCEEEEeCCCCEEeccC
Confidence 4678999999999999999999764
No 81
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=80.32 E-value=13 Score=31.20 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=42.4
Q ss_pred cccccCc--ceEEEEEeceEEEEEEeC--CC----cEEEEEEecC--CEEEeCCCCceeeeecCCCc
Q 029096 96 EEHLHTD--EEIRYCVAGSGYFDVRDR--NE----KWIRIWVKKG--GMIVLPAGCYHRFTLDTDNY 152 (199)
Q Consensus 96 ~eH~H~d--dEvr~il~G~g~f~v~~~--~d----~~~ri~~~~G--DlI~vPaG~~HrF~~~~~~~ 152 (199)
-.|.|.. .+...++.|+.+..+.|. +. +|..+.+.+. -+|.||+|..|-|..-++..
T Consensus 59 GlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 59 GLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred EEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 4677753 689999999987655433 33 5887777755 78999999999998655543
No 82
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=79.26 E-value=7 Score=28.93 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=40.9
Q ss_pred hccccccccCcc--eEEEEEeceEEEEEEeCCCc--EEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 92 KNFFEEHLHTDE--EIRYCVAGSGYFDVRDRNEK--WIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 92 ~~f~~eH~H~dd--Evr~il~G~g~f~v~~~~d~--~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
+.|...|.=... ...-|++|+..|..-+.++. -..+...+|+.-+||+...|+...-++
T Consensus 13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 566666644432 45568999999999755322 236789999999999999999985443
No 83
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=76.08 E-value=16 Score=29.39 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=39.0
Q ss_pred ccccccccCcceEEEEEec-eEEEEEEeCCCcEEEEEEec----CC--EEEeCCCCceeeeecC
Q 029096 93 NFFEEHLHTDEEIRYCVAG-SGYFDVRDRNEKWIRIWVKK----GG--MIVLPAGCYHRFTLDT 149 (199)
Q Consensus 93 ~f~~eH~H~ddEvr~il~G-~g~f~v~~~~d~~~ri~~~~----GD--lI~vPaG~~HrF~~~~ 149 (199)
.+-.+|.-..||++++..| ...+.+-+.|+.+.++.+.. |. .++||+|+..-..+.+
T Consensus 52 ~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~ 115 (139)
T PF06172_consen 52 EFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEP 115 (139)
T ss_dssp BEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECE
T ss_pred CCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccC
Confidence 4456677677999999999 45555555678877766633 43 4999999988765433
No 84
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=74.91 E-value=3 Score=36.98 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=35.1
Q ss_pred ccccccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
...|+|...|=-|+++|+..+...+..+. -.+.+|.++..|+++.|....+++..+.-||-
T Consensus 184 g~i~~h~~~eraVvI~G~~~~~~~~~~~~---~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRt 244 (251)
T PF14499_consen 184 GRIHTHASNERAVVISGELDYQSYGASNF---GTLDPGSYFGSPGHITHGIFITEDECVLYIRT 244 (251)
T ss_dssp -SEEE--S-EEEEEEEEEEEETTEEEETT---EEEEE-TT-EE--E------EESS-EEEEEEE
T ss_pred CceeccCCceEEEEEEeEEEEeecccCCC---ccccCCcccccCCcccccccccCCCEEEEEEE
Confidence 35899999999999999999866433332 46889999999999999876777776666664
No 85
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=73.04 E-value=2.7 Score=39.26 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.4
Q ss_pred EEEEecCCEEEeCCCCceeeeec
Q 029096 126 RIWVKKGGMIVLPAGCYHRFTLD 148 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~~HrF~~~ 148 (199)
.|.++|||.|.||||+.|-.--|
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G 260 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQG 260 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCC
Confidence 68999999999999999986544
No 86
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=70.89 E-value=9.3 Score=34.01 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=30.0
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceee
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF 145 (199)
.-.+.++++|++..... +. .+.+++|+.++|||+....-
T Consensus 253 ~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~ipa~~~~~~ 291 (302)
T TIGR00218 253 SALILSVLEGSGRIKSG---GK--TLPLKKGESFFIPAHLGPFT 291 (302)
T ss_pred CcEEEEEEcceEEEEEC---CE--EEEEecccEEEEccCCccEE
Confidence 35788899999987542 22 47789999999999986543
No 87
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=70.78 E-value=7.6 Score=35.00 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=30.0
Q ss_pred ccccccC-cceEEEEEeceEEEEEEe---------CCCcEEEEEEecCCEEEeCCCCceee
Q 029096 95 FEEHLHT-DEEIRYCVAGSGYFDVRD---------RNEKWIRIWVKKGGMIVLPAGCYHRF 145 (199)
Q Consensus 95 ~~eH~H~-ddEvr~il~G~g~f~v~~---------~~d~~~ri~~~~GDlI~vPaG~~HrF 145 (199)
|+.|.|+ ..|++| ||.+.. .-|+---+.++-||.+++|+=-=|.-
T Consensus 191 yPPHkHDrr~E~Yl------Yf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g 245 (276)
T PRK00924 191 MPCHTHDRRMEVYF------YFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG 245 (276)
T ss_pred CCCccCCCCcceEE------EEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC
Confidence 8999998 457655 444431 11221138899999999998766654
No 88
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=68.01 E-value=20 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
..|+-=|++|++...+. ..+.| ....+|+-..|||+..-.....+.
T Consensus 41 ~~E~M~vvsG~l~V~lp-g~~ew--~~~~aGesF~VpanssF~v~v~~~ 86 (94)
T PF06865_consen 41 APERMEVVSGELEVKLP-GEDEW--QTYSAGESFEVPANSSFDVKVKEP 86 (94)
T ss_dssp S-EEEEEEESEEEEEET-T-SS---EEEETT-EEEE-TTEEEEEEESS-
T ss_pred CCEEEEEEEeEEEEEcC-CCccc--EEeCCCCeEEECCCCeEEEEECcc
Confidence 37889999999999997 34568 568999999999998877766543
No 89
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=67.73 E-value=13 Score=34.83 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=30.7
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeee
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
.-.|.+|++|++.... .++ .+.+++|+.++|||+....-.
T Consensus 339 ~~~Illv~~G~~~i~~--~~~---~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 339 SAAILFCVEGEAVLWK--GEQ---QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEcceEEEEe--CCe---EEEECCCCEEEEeCCCccEEE
Confidence 3589999999998754 223 367999999999999776433
No 90
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=65.47 E-value=22 Score=24.47 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.9
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vP 138 (199)
.+.+++|++|.........+++ .....+.+||++-.+
T Consensus 35 ~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 35 ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 3779999999999888755443 555678899987654
No 91
>PRK10579 hypothetical protein; Provisional
Probab=64.60 E-value=30 Score=26.51 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=36.1
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
.|+-=|++|++...+.+ .++| ....+|+-..||++..-......
T Consensus 42 ~E~MeivsG~l~V~Lpg-~~ew--~~~~aG~sF~VpanssF~l~v~~ 85 (94)
T PRK10579 42 PEEMTVISGALNVLLPG-ATDW--QVYEAGEVFNVPGHSEFHLQVAE 85 (94)
T ss_pred cEEEEEEeeEEEEECCC-Cccc--EEeCCCCEEEECCCCeEEEEECc
Confidence 78889999999999973 4668 57899999999999887766544
No 92
>COG1741 Pirin-related protein [General function prediction only]
Probab=61.54 E-value=26 Score=31.43 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=53.1
Q ss_pred CCCeeeeEEECCCCC-CChHHHHhccccccccCc-ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCC--Ccee-
Q 029096 70 GYSYMDFCEVCPEKL-PNYEEKIKNFFEEHLHTD-EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG--CYHR- 144 (199)
Q Consensus 70 gY~~~Dvv~i~p~~~-p~~e~~~~~f~~eH~H~d-dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG--~~Hr- 144 (199)
+|-..|++. |+.+ | .+.|..|.|.+ +=|-|+++|+....=. -+. .-.+.+||+-..=|| |.|-
T Consensus 39 pF~~ld~~~--~~~~~p------G~~f~pHPHrg~etvTyvl~G~i~HrDS--~Gn--~~~i~pGdvqwMTAG~GI~HSE 106 (276)
T COG1741 39 PFLFLDVIG--PDVLAP------GRGFPPHPHRGLETVTYVLDGEIEHRDS--LGN--KGVIRPGDVQWMTAGSGIVHSE 106 (276)
T ss_pred Cccceeecc--cccccC------CCcCCCCCCCCcEEEEEEEccEEEEeec--CCc--eeeecccceeEEcCCCceeecc
Confidence 455566665 2221 2 34799999988 7789999999665433 232 356889999777765 7775
Q ss_pred eee-cCCCcEEEEEEecCC
Q 029096 145 FTL-DTDNYIKAMRLFVGD 162 (199)
Q Consensus 145 F~~-~~~~~~~alRlF~~~ 162 (199)
+.. .++..+..+.|+...
T Consensus 107 ~~~~~~~~~l~~~QlWv~l 125 (276)
T COG1741 107 MNPPSTGKPLHGLQLWVNL 125 (276)
T ss_pred cCCccCCCccceeeeecCC
Confidence 333 345567777776554
No 93
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=57.21 E-value=24 Score=31.57 Aligned_cols=43 Identities=12% Similarity=0.083 Sum_probs=32.8
Q ss_pred eEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 104 EIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 104 Evr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
=+.++.+|.....- .++++ +.|.+|.+|++|.+..|.+...+.
T Consensus 40 ~li~v~~G~~~i~~--~~g~~--l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 40 VLIKLTTGKISITT--SSGEY--ITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred EEEEeccceEEEEe--CCCce--EEeCCCeEEEEeCCcEEEEEeccc
Confidence 45677777765544 34554 789999999999999999987664
No 94
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=56.55 E-value=6.8 Score=36.83 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.2
Q ss_pred EEEEecCCEEEeCCCCceeeeec
Q 029096 126 RIWVKKGGMIVLPAGCYHRFTLD 148 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~~HrF~~~ 148 (199)
...++|||++.||+|..|.-...
T Consensus 180 d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 180 DEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred hhhcCCCceeecCCCCCcCCccc
Confidence 45799999999999999998765
No 95
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=56.34 E-value=52 Score=26.33 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=27.2
Q ss_pred ceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vP 138 (199)
+.+++|++|.......+.+++ .+--.+.+||++-.+
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE 63 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence 569999999999888766665 333445899998654
No 96
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=55.94 E-value=67 Score=26.87 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=37.7
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
-+-+++|++|......-+.+++ .+--.+.+||++-...+..+.++...-.....+.+
T Consensus 56 ~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i 113 (230)
T PRK09391 56 ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLI 113 (230)
T ss_pred CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEE
Confidence 3678999999998877655555 34445689999887766666555444333444443
No 97
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=55.90 E-value=77 Score=25.44 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=35.1
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCC----CCceeeeecCCCcEEEEEE
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPA----GCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vPa----G~~HrF~~~~~~~~~alRl 158 (199)
.+.+++|++|.........+++ .+--.+.+||++-... +..+.++........++.+
T Consensus 38 ~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 38 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 4679999999998877655544 4445789999985433 2334444333333444443
No 98
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.89 E-value=8 Score=37.82 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=45.4
Q ss_pred ccccccCcceEEEEEeceEEEEEE--------------------eCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEE
Q 029096 95 FEEHLHTDEEIRYCVAGSGYFDVR--------------------DRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIK 154 (199)
Q Consensus 95 ~~eH~H~ddEvr~il~G~g~f~v~--------------------~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~ 154 (199)
|..|.-+-|-...-|+|+-+.-+- +.+.-++...++|||+|.+|.|+-|-..+.+.-+-.
T Consensus 331 faPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSl 410 (629)
T KOG3706|consen 331 FAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSL 410 (629)
T ss_pred CCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccccchhcee
Confidence 455554445555556676665552 233447788899999999999999999887765555
Q ss_pred EEEEecC
Q 029096 155 AMRLFVG 161 (199)
Q Consensus 155 alRlF~~ 161 (199)
.+-+-+.
T Consensus 411 HvTlSty 417 (629)
T KOG3706|consen 411 HVTLSTY 417 (629)
T ss_pred EEEeehh
Confidence 5555443
No 99
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=54.55 E-value=48 Score=22.23 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=29.4
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCC
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPA 139 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vPa 139 (199)
.+.++||++|.........+++ -+--.+.+||++-..+
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~ 55 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIE 55 (91)
T ss_dssp ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHH
T ss_pred CCEEEEEEECceEEEeceecceeeeecceeeecccccee
Confidence 5899999999999999866665 2345778999876554
No 100
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=49.00 E-value=45 Score=30.62 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=51.9
Q ss_pred HHHHHHhcCCCeeeeEEECCCCCCChHHHHh-------cc--cccc--------ccCcceEEEEEeceEEEEEEeCCCcE
Q 029096 62 LKKIREDRGYSYMDFCEVCPEKLPNYEEKIK-------NF--FEEH--------LHTDEEIRYCVAGSGYFDVRDRNEKW 124 (199)
Q Consensus 62 l~~l~~e~gY~~~Dvv~i~p~~~p~~e~~~~-------~f--~~eH--------~H~ddEvr~il~G~g~f~v~~~~d~~ 124 (199)
+.+|++-.-++..|+.++... |..+.... .| +.+= .+..-.|.++++|+|..... ++
T Consensus 205 ~~~lr~l~~~k~~~~~~~~~~--~~~~~~~~~~~v~~~~F~l~~~~i~~~~~~~~~~~~~il~v~eG~~~l~~~---~~- 278 (312)
T COG1482 205 IGELRELHLFKAKDVITLPTQ--PRKQGAELTYPVPNEDFALYKWDISGTAEFIKQESFSILLVLEGEGTLIGG---GQ- 278 (312)
T ss_pred chhHHhhhhccccchhhcCCc--ccccCceEEEeccccceEEEEEeccChhhhccCCCcEEEEEEcCeEEEecC---CE-
Confidence 466777778888888888522 11111111 11 1111 12356899999999987764 44
Q ss_pred EEEEEecCCEEEeCCCCceeeeecC
Q 029096 125 IRIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 125 ~ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
...+++|+-++|||...-+.-.+.
T Consensus 279 -~~~l~~G~s~~ipa~~~~~~i~g~ 302 (312)
T COG1482 279 -TLKLKKGESFFIPANDGPYTIEGE 302 (312)
T ss_pred -EEEEcCCcEEEEEcCCCcEEEEec
Confidence 478999999999999776655444
No 101
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=46.62 E-value=1e+02 Score=25.41 Aligned_cols=57 Identities=5% Similarity=0.007 Sum_probs=35.3
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeC---CCCceeeeecCCCcEEEEEE
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLP---AGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vP---aG~~HrF~~~~~~~~~alRl 158 (199)
.+.+++|++|.........+++..-..+.+||++-.. .+.++.++...-.....+++
T Consensus 48 ~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i 107 (236)
T PRK09392 48 ADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMI 107 (236)
T ss_pred cceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEE
Confidence 3789999999998876544444444577889986533 23344444433334555555
No 102
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=46.49 E-value=1.7e+02 Score=24.23 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=27.8
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCC
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPA 139 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vPa 139 (199)
.+.+++|++|.......+.+|+ .+--.+.+||++-..+
T Consensus 49 ~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~ 87 (226)
T PRK10402 49 PSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIE 87 (226)
T ss_pred CceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeeh
Confidence 3689999999998877656655 3334578999987543
No 103
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=45.20 E-value=41 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.667 Sum_probs=17.2
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
-|.+.|.|...|+..+ +|.+..||+++|
T Consensus 15 lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlV 52 (83)
T smart00652 15 LGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLV 52 (83)
T ss_pred cCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEE
Confidence 4667777765555432 455666777666
No 104
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=44.54 E-value=1.8e+02 Score=23.90 Aligned_cols=70 Identities=10% Similarity=-0.004 Sum_probs=43.0
Q ss_pred ccccccccCcc-eEEEEEeceEEEEEEe-CCC--cE-----EEEEEecCCEEEeCCCCceeee-ecCCCcEEEEEEecCC
Q 029096 93 NFFEEHLHTDE-EIRYCVAGSGYFDVRD-RNE--KW-----IRIWVKKGGMIVLPAGCYHRFT-LDTDNYIKAMRLFVGD 162 (199)
Q Consensus 93 ~f~~eH~H~dd-Evr~il~G~g~f~v~~-~~d--~~-----~ri~~~~GDlI~vPaG~~HrF~-~~~~~~~~alRlF~~~ 162 (199)
++-..|-|... =+..|++|+..-..=. .++ .. .......|...+.+.+--|+.. .+.+.....|.+|.++
T Consensus 86 q~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~~avSLHvYspP 165 (175)
T PF05995_consen 86 QRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDEPAVSLHVYSPP 165 (175)
T ss_dssp -B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS-EEEEEEEES-
T ss_pred CcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCCCEEEEEEcCCC
Confidence 55689999865 5677999997644321 122 11 1334567777788988889995 4546678899999875
No 105
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=44.36 E-value=45 Score=24.21 Aligned_cols=28 Identities=29% Similarity=0.705 Sum_probs=16.0
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
-|.+.|.|...|+..+ +|.+.+||++.|
T Consensus 10 ~g~~~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~V 47 (77)
T cd05793 10 LGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLV 47 (77)
T ss_pred cCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEE
Confidence 3556666654444432 456667777666
No 106
>PLN02288 mannose-6-phosphate isomerase
Probab=43.40 E-value=40 Score=31.75 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=29.2
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCc
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCY 142 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~ 142 (199)
..-.|.+|++|++..... ++. ..+.+++|+.++||++..
T Consensus 353 ~gp~Illv~~G~~~i~~~--~~~-~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 353 PGPSVFLVIEGEGVLSTG--SSE-DGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred CCCEEEEEEcCEEEEecC--Ccc-ceEEEeceeEEEEeCCCc
Confidence 346899999999987653 222 236789999999999753
No 107
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=43.00 E-value=81 Score=21.54 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=27.8
Q ss_pred cceEEEEEeceEEEEEEeCCC-cEEEEEEecCCEEEeCC
Q 029096 102 DEEIRYCVAGSGYFDVRDRNE-KWIRIWVKKGGMIVLPA 139 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d-~~~ri~~~~GDlI~vPa 139 (199)
.+.+++|++|.......+.++ ..+.-.+.+||++-...
T Consensus 35 ~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~ 73 (120)
T smart00100 35 GDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELA 73 (120)
T ss_pred CCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhh
Confidence 477999999999888764443 34455778999886654
No 108
>PF10983 DUF2793: Protein of unknown function (DUF2793); InterPro: IPR021251 This entry is represented by Bacteriophage D3112, Orf54. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=38.06 E-value=74 Score=23.81 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=28.2
Q ss_pred ecCCEEEeCCCCceeeeecCCCcEEE-----EEEecCCCceeecCCCC
Q 029096 130 KKGGMIVLPAGCYHRFTLDTDNYIKA-----MRLFVGDPVWTPFNRPH 172 (199)
Q Consensus 130 ~~GDlI~vPaG~~HrF~~~~~~~~~a-----lRlF~~~~gW~~~~r~~ 172 (199)
..||..+||+|-.=-+ .+-+..+.+ .+|+.+.+||.++....
T Consensus 29 ~~Gd~yiv~~~atGaW-aG~~g~iA~~~~g~W~f~~P~~GW~a~v~~~ 75 (87)
T PF10983_consen 29 AEGDRYIVPAGATGAW-AGQDGKIAAWQDGAWRFLTPRPGWRAWVADE 75 (87)
T ss_pred CCCCEEEECCCCCccc-ccCCCCEEEEECCeEEEeCCCCCcEEEEeCC
Confidence 3588989998843211 223344544 78999999999987654
No 109
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=37.88 E-value=54 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.595 Sum_probs=17.6
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
-|.+.|.|...|+..+ +|.+.+||++.|
T Consensus 10 lG~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV 47 (78)
T cd04456 10 LGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIV 47 (78)
T ss_pred CCCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEE
Confidence 3566666665544432 466778888877
No 110
>PLN02288 mannose-6-phosphate isomerase
Probab=37.02 E-value=28 Score=32.73 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.9
Q ss_pred EEEEecCCEEEeCCCCceeeeecC
Q 029096 126 RIWVKKGGMIVLPAGCYHRFTLDT 149 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~~HrF~~~~ 149 (199)
.|.++||+-|.+|||+.|-.--|.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~ 275 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGE 275 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCC
Confidence 689999999999999999875443
No 111
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=35.62 E-value=64 Score=26.21 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=38.9
Q ss_pred CcceEEEEE----eceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCceee
Q 029096 101 TDEEIRYCV----AGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 167 (199)
Q Consensus 101 ~ddEvr~il----~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~gW~~ 167 (199)
+.+|++-++ .|+.-+.|-+.- --.++|||+|-+-.|..--|. -+++||.+..||+.
T Consensus 34 dg~~v~~~kVaD~TgsI~isvW~e~----~~~~~PGDIirLt~Gy~Si~q-------g~LtL~~GK~Ge~~ 93 (134)
T KOG3416|consen 34 DGHEVRSCKVADETGSINISVWDEE----GCLIQPGDIIRLTGGYASIFQ-------GCLTLYVGKGGEVQ 93 (134)
T ss_pred CCCEEEEEEEecccceEEEEEecCc----CcccCCccEEEecccchhhhc-------CceEEEecCCceEe
Confidence 346888776 467777777422 247899999999888655443 26777777777763
No 112
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=35.32 E-value=1.1e+02 Score=22.81 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=34.9
Q ss_pred CcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCC
Q 029096 101 TDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDP 163 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~ 163 (199)
..+=..|+++|++.+ . ++. ..+.+|+++++..|..=.++.++ .....| |+.++|
T Consensus 19 ~~~~~iyv~~G~~~v--~--~~~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~l-ll~GeP 72 (104)
T PF05726_consen 19 GHNAFIYVLEGSVEV--G--GEE---DPLEAGQLVVLEDGDEIELTAGE-EGARFL-LLGGEP 72 (104)
T ss_dssp T-EEEEEEEESEEEE--T--TTT---EEEETTEEEEE-SECEEEEEESS-SSEEEE-EEEE--
T ss_pred CCEEEEEEEECcEEE--C--CCc---ceECCCcEEEECCCceEEEEECC-CCcEEE-EEEccC
Confidence 346788999999653 2 222 57899999999987777787774 334555 555544
No 113
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=34.60 E-value=68 Score=27.30 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCe-eeeEEECCCCCCChHHHHhccccccccCcc---eEEEEE----eceEEEEEEeC-----------
Q 029096 60 EELKKIREDRGYSY-MDFCEVCPEKLPNYEEKIKNFFEEHLHTDE---EIRYCV----AGSGYFDVRDR----------- 120 (199)
Q Consensus 60 ~~l~~l~~e~gY~~-~Dvv~i~p~~~p~~e~~~~~f~~eH~H~dd---Evr~il----~G~g~f~v~~~----------- 120 (199)
..+.+..++.|+.. .--+.|..- .+|.-. ...+...|.|+.- =|+|+- .|.+.|.--..
T Consensus 75 ~~v~~~~~~l~~d~~~~~l~i~~~-W~ni~~-~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~ 152 (201)
T TIGR02466 75 KHVAKFARDLEGDNDGLELRIQKA-WVNILP-QGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIP 152 (201)
T ss_pred HHHHHHHHHcCCCccccceEEeeE-eEEEcC-CCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccC
Confidence 45566777777732 111222211 244332 2578899999974 455555 23333321100
Q ss_pred -----CCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 121 -----NEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 121 -----~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
...++.+.-++||+|+-|.=+.|.-..
T Consensus 153 ~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v~p 184 (201)
T TIGR02466 153 NAKRAVQRFVYVPPQEGRVLLFESWLRHEVPP 184 (201)
T ss_pred ccccccCccEEECCCCCeEEEECCCCceecCC
Confidence 112445677899999999999998654
No 114
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=34.57 E-value=25 Score=27.47 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCEEEeCCCCceeeee
Q 029096 122 EKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 122 d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
..++.+.+++||+|+.-..+.|+-..
T Consensus 177 ~~~~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 177 DEWVPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp SGCEEE-BSTTEEEEEETTSEEEEE-
T ss_pred CceEEeecCCCeEEEEcCCccccCCC
Confidence 45688999999999999999998765
No 115
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=34.48 E-value=67 Score=24.56 Aligned_cols=28 Identities=32% Similarity=0.709 Sum_probs=17.3
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
-|.+.|.|...|+..+ +|.+.+||++.|
T Consensus 29 lG~~~~~V~~~dG~~~la~i~GK~Rk~iwI~~GD~VlV 66 (99)
T TIGR00523 29 LGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIV 66 (99)
T ss_pred cCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEE
Confidence 3566777765554432 566777777776
No 116
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=34.31 E-value=1.9e+02 Score=23.70 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=26.7
Q ss_pred cceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEeC
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLP 138 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vP 138 (199)
-+.+++|++|.......+.+++ .+--.+.+||++-.+
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~ 92 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD 92 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccc
Confidence 3678999999998877655554 344455899998643
No 117
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.07 E-value=1.1e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=33.9
Q ss_pred cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 102 DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 102 ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
..|+.=++.|++.+-+- .+++| ....+|..+.||++-..-...
T Consensus 41 ~~E~Mtvv~Gal~v~lp-gs~dW--q~~~~Ge~F~VpgnS~F~lqV 83 (94)
T COG3123 41 APEEMTVVSGALTVLLP-GSDDW--QVYTAGEVFNVPGNSEFDLQV 83 (94)
T ss_pred CceEEEEEeeEEEEEcC-CCccc--EEecCCceEEcCCCCeEEEEE
Confidence 46888899999998887 35678 468899999999987655443
No 118
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=33.95 E-value=80 Score=23.20 Aligned_cols=12 Identities=25% Similarity=0.626 Sum_probs=9.6
Q ss_pred EEEEecCCEEEe
Q 029096 126 RIWVKKGGMIVL 137 (199)
Q Consensus 126 ri~~~~GDlI~v 137 (199)
+|.+.+||.+.|
T Consensus 44 ~i~I~~GD~V~V 55 (75)
T COG0361 44 RIRILPGDVVLV 55 (75)
T ss_pred eEEeCCCCEEEE
Confidence 677888888776
No 119
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=32.50 E-value=76 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=17.5
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
-|.+.|.|...|+..+ +|.+.+||.++|
T Consensus 31 lG~~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlV 68 (100)
T PRK04012 31 LGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIV 68 (100)
T ss_pred cCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEE
Confidence 3567777765554432 566777777776
No 120
>PHA02890 hypothetical protein; Provisional
Probab=31.69 E-value=2.1e+02 Score=25.99 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=44.5
Q ss_pred ceEEE--EEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCC
Q 029096 103 EEIRY--CVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDP 163 (199)
Q Consensus 103 dEvr~--il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~ 163 (199)
-|-+| +++|++..-+- .+|+-+.-.+.+||-+++=-|+.|.-.+ .+-.+..+++=.+-|
T Consensus 91 nEy~FVlCL~Gs~~In~~-~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Viky~vd~p 151 (278)
T PHA02890 91 IECFFVACIEGSCKINVN-IGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFITKFEVDAH 151 (278)
T ss_pred ccEEEEEEeCCeEEEEEe-cCCceeeeeeecCceEEEEccceEEEEc-cceeEEEEEEEecce
Confidence 35555 47899998887 6677888999999999999999999877 554555555544433
No 121
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=31.44 E-value=70 Score=22.23 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=28.2
Q ss_pred EEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeee
Q 029096 106 RYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTL 147 (199)
Q Consensus 106 r~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~ 147 (199)
.-+.+|..-....+..+ -+.+.+||-+.||+|-.=|...
T Consensus 20 l~v~~G~vWlT~~g~~~---D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 20 LRVESGRVWLTREGDPD---DYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEEccccEEEECCCCCC---CEEECCCCEEEeCCCCEEEEEe
Confidence 56778887777754222 2568999999999997766554
No 122
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=31.29 E-value=48 Score=21.67 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCceeec
Q 029096 127 IWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPF 168 (199)
Q Consensus 127 i~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~gW~~~ 168 (199)
+.+++||+|.|= . ....+....+.. .+..||+|-
T Consensus 16 Ls~~~Gd~i~v~-----~-~~~~~~ww~~~~--~g~~G~~P~ 49 (55)
T PF07653_consen 16 LSFKKGDVIEVL-----G-EKDDDGWWLGEN--NGRRGWFPS 49 (55)
T ss_dssp -EB-TTEEEEEE-----E-EECSTSEEEEEE--TTEEEEEEG
T ss_pred eEEecCCEEEEE-----E-eecCCCEEEEEE--CCcEEEEcH
Confidence 788899988774 0 112234444433 677789883
No 123
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=31.07 E-value=1e+02 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=30.7
Q ss_pred EEEEeceEEEEEEeC--CCcEEEEEEecCCEEEeCCCCceee
Q 029096 106 RYCVAGSGYFDVRDR--NEKWIRIWVKKGGMIVLPAGCYHRF 145 (199)
Q Consensus 106 r~il~G~g~f~v~~~--~d~~~ri~~~~GDlI~vPaG~~HrF 145 (199)
.+=|--+..|.++.. ++....+.++.||+|+.-...+++|
T Consensus 125 SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~ 166 (169)
T TIGR00568 125 SVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAF 166 (169)
T ss_pred EEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccc
Confidence 344556788888754 3446799999999999988888766
No 124
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=30.24 E-value=26 Score=31.54 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=14.6
Q ss_pred EEecCCEEEeCCCCce
Q 029096 128 WVKKGGMIVLPAGCYH 143 (199)
Q Consensus 128 ~~~~GDlI~vPaG~~H 143 (199)
..++||.|.||+|+|+
T Consensus 7 ~A~~GDtI~l~~G~Y~ 22 (314)
T TIGR03805 7 AAQPGDTIVLPEGVFQ 22 (314)
T ss_pred hCCCCCEEEECCCEEE
Confidence 4689999999999998
No 125
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=30.22 E-value=50 Score=25.18 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred ceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceee
Q 029096 111 GSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF 145 (199)
Q Consensus 111 G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF 145 (199)
|.|.|.|. +..+ .||+|+.|.++..|-
T Consensus 6 ~~g~~~i~---g~~y-----~~~viv~p~~~~~w~ 32 (109)
T cd00248 6 GPGGFRIA---GQVY-----RGPLLVLPDGVVPWD 32 (109)
T ss_pred cCCEEEEC---CEEE-----eeCEEEeCCceeecC
Confidence 56667774 5544 599999999999983
No 126
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=29.67 E-value=1.1e+02 Score=23.93 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=30.1
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEE-EEecCCEEEeCCCC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRI-WVKKGGMIVLPAGC 141 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri-~~~~GDlI~vPaG~ 141 (199)
+-+++|++|.........+++..-+ .+.+||++-..+-.
T Consensus 42 ~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 42 DSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL 81 (214)
T ss_pred ceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence 4489999999999998766664434 58899999888654
No 127
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=29.60 E-value=2.6e+02 Score=22.46 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred CcceEEEEEeceEEEEEEeCC------------C------cEEEEEEecCCEEEeCCCCceeee
Q 029096 101 TDEEIRYCVAGSGYFDVRDRN------------E------KWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 101 ~ddEvr~il~G~g~f~v~~~~------------d------~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
..-.|-|+|+|+=.+.+.... | ....+.+.+|+++++-++=.|+..
T Consensus 64 ~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 64 RYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 347788889998888775321 1 112577888888888888888876
No 128
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=29.52 E-value=2e+02 Score=20.09 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=35.6
Q ss_pred EEEeceEEEEEEeCCCc-EEEEEEecCCEEEeCCCCceeeeecCCCc
Q 029096 107 YCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVLPAGCYHRFTLDTDNY 152 (199)
Q Consensus 107 ~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~vPaG~~HrF~~~~~~~ 152 (199)
+-..|.+.+.|.+.+++ .+.-.+.+||-+.++.+-.=.++++....
T Consensus 3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~ 49 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGA 49 (77)
T ss_pred EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCc
Confidence 34568899999877764 56778899999999888887888876653
No 129
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=28.79 E-value=1.3e+02 Score=23.65 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=26.4
Q ss_pred ceEEEEEeceEEEEEEeCCCc-EEEEEEecCCEEEe
Q 029096 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVKKGGMIVL 137 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~-~~ri~~~~GDlI~v 137 (199)
+-+++|++|.........+++ .+--.+.+||++-.
T Consensus 12 ~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 12 EKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 678999999999887666654 33446899998754
No 130
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=28.71 E-value=60 Score=22.47 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=15.5
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
-|...|.|...|+..+ +|.+.+||++.|
T Consensus 13 lG~~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V 50 (65)
T PF01176_consen 13 LGNNLFEVECEDGEERLARIPGKFRKRIWIKRGDFVLV 50 (65)
T ss_dssp ESSSEEEEEETTSEEEEEEE-HHHHTCC---TTEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEeccceeeeEecCCCCEEEE
Confidence 4666777776655533 355677777665
No 131
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=28.28 E-value=1.8e+02 Score=23.28 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=26.4
Q ss_pred EEEeceEEEEEEeC--CCcEEEEEEecCCEEEeCCCCce
Q 029096 107 YCVAGSGYFDVRDR--NEKWIRIWVKKGGMIVLPAGCYH 143 (199)
Q Consensus 107 ~il~G~g~f~v~~~--~d~~~ri~~~~GDlI~vPaG~~H 143 (199)
+=|-++..|.++.. .+..+.+.+..||+++.-...+.
T Consensus 128 lSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~ 166 (194)
T PF13532_consen 128 LSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARY 166 (194)
T ss_dssp EEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHH
T ss_pred EEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhh
Confidence 33456888999865 36789999999999999877543
No 132
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=28.25 E-value=1.1e+02 Score=26.51 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=31.0
Q ss_pred EEEEeceEEEEEEe--CCCcEEEEEEecCCEEEeCCCCceeee
Q 029096 106 RYCVAGSGYFDVRD--RNEKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 106 r~il~G~g~f~v~~--~~d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
.+=|-.++.|.++. .+++...|.++.||+|+.-...++|+-
T Consensus 146 SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~H 188 (213)
T PRK15401 146 SVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYH 188 (213)
T ss_pred EEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheec
Confidence 34455678888874 245678999999999999777777663
No 133
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=28.24 E-value=32 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=21.5
Q ss_pred EEEEec---eEEEEEEeCCCcEEEEEEecCCEEEeCC
Q 029096 106 RYCVAG---SGYFDVRDRNEKWIRIWVKKGGMIVLPA 139 (199)
Q Consensus 106 r~il~G---~g~f~v~~~~d~~~ri~~~~GDlI~vPa 139 (199)
-|++.| ||.+.+.+.. .-.+++||.|+|=+
T Consensus 56 TYvI~g~~gSg~I~lNGAA----Ar~~~~GD~vII~s 88 (111)
T cd06919 56 TYVIPGERGSGVICLNGAA----ARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEE
Confidence 466665 5899986432 35899999998854
No 134
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=28.23 E-value=89 Score=22.25 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=33.8
Q ss_pred hccccccccC---c-ceEEEE--Ee------ceEEEEEEeC---CCcEEEEE-----EecCCEEEeCC-CCceeeeec
Q 029096 92 KNFFEEHLHT---D-EEIRYC--VA------GSGYFDVRDR---NEKWIRIW-----VKKGGMIVLPA-GCYHRFTLD 148 (199)
Q Consensus 92 ~~f~~eH~H~---d-dEvr~i--l~------G~g~f~v~~~---~d~~~ri~-----~~~GDlI~vPa-G~~HrF~~~ 148 (199)
..++.+|+.. . ..+.++ |. -.|.+.+... ++....+. .++|++|+.|. .+.|..+.-
T Consensus 9 G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 9 GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEEEEE
T ss_pred CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecCccc
Confidence 4577888876 3 344444 44 2255555531 22333344 88999999999 999998764
No 135
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=26.30 E-value=1.9e+02 Score=26.20 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=50.6
Q ss_pred ceEEEEEeceEEEEEEeCCCc-EEEEEEe-cCCE-EEeCCC-CceeeeecCCCcEEEEEEecCCCceeecCCCCCCchhH
Q 029096 103 EEIRYCVAGSGYFDVRDRNEK-WIRIWVK-KGGM-IVLPAG-CYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPAR 178 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~-~~ri~~~-~GDl-I~vPaG-~~HrF~~~~~~~~~alRlF~~~~gW~~~~r~~d~~~~r 178 (199)
|.|....+|.-+|.|.+.|++ ...|.+. .|-. +.+|.| +.|.+++...+.+ +....++|=+.|--+
T Consensus 55 enI~~~r~g~n~fcI~den~qEILSvt~dda~~YTV~c~g~~~t~~~~~~~~~~v--------~~~~~~~nlt~di~a-- 124 (292)
T PRK15372 55 ENIHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGV--------ERTDITYNLTSDIDA-- 124 (292)
T ss_pred hhhhcccCCCceEEEEcCCCceeEEEEEcCCCceEEEeCCcceEEEeeccCCCcc--------hhccCccccccCCCH--
Confidence 455667889999999988766 5567776 5544 556655 6788887665432 233456677666533
Q ss_pred HHHHHHHhhc
Q 029096 179 KGYVQNFLQK 188 (199)
Q Consensus 179 ~~yl~~~~~~ 188 (199)
-+||..|+.+
T Consensus 125 ~~yl~el~~~ 134 (292)
T PRK15372 125 AAYLEELKQN 134 (292)
T ss_pred HHHHHHhhcC
Confidence 4699999843
No 136
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=26.01 E-value=1.2e+02 Score=22.22 Aligned_cols=28 Identities=25% Similarity=0.671 Sum_probs=18.0
Q ss_pred eceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 110 AGSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 110 ~G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
.|...|.+...|++.. ++.++.||+++|
T Consensus 10 ~G~n~~~V~~~dG~~~l~~iP~KfRk~iWIkrGd~VlV 47 (78)
T cd05792 10 KGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLV 47 (78)
T ss_pred CCCcEEEEEcCCCCEEEEEechhhcccEEEEeCCEEEE
Confidence 4556666665554432 567888888777
No 137
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.57 E-value=2.8e+02 Score=23.71 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=34.2
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeee-ecCCCcEEEEEEecCCCceeec
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFT-LDTDNYIKAMRLFVGDPVWTPF 168 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~-~~~~~~~~alRlF~~~~gW~~~ 168 (199)
+|-+||.+ ..+..+|..-+..++|.- .|++|..--.- ...+....-||.+.+..||++-
T Consensus 23 ~et~YIsD-~l~v~lRsGPg~~y~Iv~------~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~ 82 (206)
T PRK10884 23 EEKRYVSD-ELNTYVRSGPGDQYRIVG------TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPL 82 (206)
T ss_pred hccEEEEc-ceeEEEEcCCCCCCceEE------EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEH
Confidence 45678765 344555544343344432 46666665432 2332345667778889999983
No 138
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=25.11 E-value=2e+02 Score=25.03 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=44.6
Q ss_pred ccCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCceee
Q 029096 99 LHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 167 (199)
Q Consensus 99 ~H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~gW~~ 167 (199)
.|--|.-+.||.|+..=... ++.-.....|||....|.|...-..+.++-.+... ..||+|
T Consensus 116 rh~ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~~tw~LEY-----~RG~IP 176 (216)
T PF04622_consen 116 RHWADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPPGTWALEY-----GRGWIP 176 (216)
T ss_pred ceEeeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCCCeEEEEe-----cCCchh
Confidence 45568889999999765553 33235678899999999999999988877543333 367777
No 139
>PLN02868 acyl-CoA thioesterase family protein
Probab=24.76 E-value=1.6e+02 Score=27.15 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=27.0
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLP 138 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vP 138 (199)
+.+++|++|+......+.+++.+--.+.+||++-..
T Consensus 50 ~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 50 DGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG 85 (413)
T ss_pred ceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh
Confidence 679999999998777655555444466899998743
No 140
>PHA02984 hypothetical protein; Provisional
Probab=24.68 E-value=3.4e+02 Score=24.78 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=41.4
Q ss_pred ceEEE--EEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecC-CCcEEEEEE
Q 029096 103 EEIRY--CVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDT-DNYIKAMRL 158 (199)
Q Consensus 103 dEvr~--il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~-~~~~~alRl 158 (199)
-|-.| +|.|++...+- .+++-+...+.+|+-+++=-++.|.-++.. +-.+..+++
T Consensus 92 nEy~FvlCl~G~~~I~~~-~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y 149 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECF-NKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITY 149 (286)
T ss_pred ccEEEEEEcCCeEEEEEe-cCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEE
Confidence 45555 47899988887 457778899999999999999999987653 333444444
No 141
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=24.59 E-value=49 Score=26.70 Aligned_cols=16 Identities=19% Similarity=0.574 Sum_probs=14.0
Q ss_pred EEEEecCCEEEeCCCC
Q 029096 126 RIWVKKGGMIVLPAGC 141 (199)
Q Consensus 126 ri~~~~GDlI~vPaG~ 141 (199)
.+.+++||.|+||..+
T Consensus 149 n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 149 NVELKPGDVLIIPESW 164 (165)
T ss_pred CceeCCCCEEEEeccc
Confidence 4789999999999865
No 142
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=24.38 E-value=40 Score=27.16 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEEec---eEEEEEEeCCCcEEEEEEecCCEEEeCCC
Q 029096 106 RYCVAG---SGYFDVRDRNEKWIRIWVKKGGMIVLPAG 140 (199)
Q Consensus 106 r~il~G---~g~f~v~~~~d~~~ri~~~~GDlI~vPaG 140 (199)
-|++.| ||.+.+.+.. .-.+++||.|+|=+-
T Consensus 57 TYvI~G~~GSg~I~lNGAA----Arl~~~GD~VII~sy 90 (126)
T TIGR00223 57 TYAIAGKRGSRIICVNGAA----ARCVSVGDIVIIASY 90 (126)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEEC
Confidence 466655 5889986432 347999999988553
No 143
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=24.36 E-value=2.5e+02 Score=19.56 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=37.2
Q ss_pred ceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCCCcEEEEEEecC
Q 029096 103 EEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVG 161 (199)
Q Consensus 103 dEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~ 161 (199)
.-...+..|+.+|.+....... +.++.+...+...|+.-+........-..+..+.+
T Consensus 39 ~~~~~L~~G~~~~~~~~~~~~~--~~V~T~~~~i~v~GT~f~v~v~~~~~~~~v~v~~G 95 (98)
T PF04773_consen 39 PTRLRLLSGEILFDVSPGKKRP--FEVRTPTATIGVRGTRFSVRVDAEDGSTRVAVLEG 95 (98)
T ss_pred ceEEEEcCCCEEEEEcccCCCC--EEEEeCCEEEEEecCEEEEEEECCCCcEEEEEEee
Confidence 4457779999999998433322 66777888888889866556544444455555543
No 144
>PLN00208 translation initiation factor (eIF); Provisional
Probab=24.19 E-value=1.3e+02 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=18.1
Q ss_pred ceEEEEEEeCCCcEE----------EEEEecCCEEEeC
Q 029096 111 GSGYFDVRDRNEKWI----------RIWVKKGGMIVLP 138 (199)
Q Consensus 111 G~g~f~v~~~~d~~~----------ri~~~~GDlI~vP 138 (199)
|.+.|.|...|+... +|++.+||+++|=
T Consensus 43 Gn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVe 80 (145)
T PLN00208 43 GNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVG 80 (145)
T ss_pred CCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEE
Confidence 566666665544322 5778888888874
No 145
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=24.13 E-value=41 Score=27.08 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=21.5
Q ss_pred EEEEec---eEEEEEEeCCCcEEEEEEecCCEEEeCC
Q 029096 106 RYCVAG---SGYFDVRDRNEKWIRIWVKKGGMIVLPA 139 (199)
Q Consensus 106 r~il~G---~g~f~v~~~~d~~~ri~~~~GDlI~vPa 139 (199)
-|++.| ||.+.+.+.. .-.+++||.|+|=+
T Consensus 57 TYvI~g~~GSg~I~lNGAA----Ar~~~~GD~vII~a 89 (126)
T PRK05449 57 TYVIAGERGSGVICLNGAA----ARLVQVGDLVIIAA 89 (126)
T ss_pred EEEEEcCCCCCEEEeCCHH----HhcCCCCCEEEEEE
Confidence 466655 5889986433 35799999998854
No 146
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=23.91 E-value=1.5e+02 Score=25.40 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=31.4
Q ss_pred EEEEeceEEEEEEeCC--CcEEEEEEecCCEEEeCCCCceeee
Q 029096 106 RYCVAGSGYFDVRDRN--EKWIRIWVKKGGMIVLPAGCYHRFT 146 (199)
Q Consensus 106 r~il~G~g~f~v~~~~--d~~~ri~~~~GDlI~vPaG~~HrF~ 146 (199)
.+=+-..+.|.++... +.+.++.++.||+++.=...++-|.
T Consensus 136 slSLg~~~~F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~ 178 (194)
T COG3145 136 SLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWH 178 (194)
T ss_pred EEecCCCeEEEeccccCCCCceeEEecCCCEEEecCCcccccc
Confidence 3345578889998665 7788999999999998766666444
No 147
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=23.58 E-value=3.8e+02 Score=21.27 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=42.5
Q ss_pred cCcceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceee---eecCCCcEEEEEEe
Q 029096 100 HTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRF---TLDTDNYIKAMRLF 159 (199)
Q Consensus 100 H~ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF---~~~~~~~~~alRlF 159 (199)
--+-=+.+|+.|+=...++ ++ .+...+|+++++|.+++=.. .++++..+.++++.
T Consensus 21 ~y~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 21 VYEPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred ecCCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 3345678999999888885 34 36799999999999987644 45667778999886
No 148
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=23.43 E-value=1.1e+02 Score=25.36 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.2
Q ss_pred EEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCC
Q 029096 107 YCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAG 140 (199)
Q Consensus 107 ~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG 140 (199)
.-++|+|...|.. .+..+++.+.+|+-++|.++
T Consensus 134 ~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~ 166 (215)
T PF01987_consen 134 LKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPG 166 (215)
T ss_dssp EEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGG
T ss_pred EEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCC
Confidence 3488999999984 57788999999999888776
No 149
>PLN02168 copper ion binding / pectinesterase
Probab=22.18 E-value=2.2e+02 Score=27.88 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=32.1
Q ss_pred ccccccCcceEEEEE-eceEEEEEEeCCCcEEE-EEEecCCEEEeCCCCceeeeecCCCcEEEEEEecCCCc-ee
Q 029096 95 FEEHLHTDEEIRYCV-AGSGYFDVRDRNEKWIR-IWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPV-WT 166 (199)
Q Consensus 95 ~~eH~H~ddEvr~il-~G~g~f~v~~~~d~~~r-i~~~~GDlI~vPaG~~HrF~~~~~~~~~alRlF~~~~g-W~ 166 (199)
.+.|+|-.+ +||| .|.|.|+=.+. ..+. .-=-.-|.+.||+| .-.+|||-.+.|| |.
T Consensus 437 HP~HLHGh~--F~Vvg~g~g~~~~~~~--~~~Nl~nP~rRDTv~vp~~-----------Gw~vIRF~aDNPG~Wl 496 (545)
T PLN02168 437 ESYHIDGYN--FFVVGYGFGAWSESKK--AGYNLVDAVSRSTVQVYPY-----------SWTAILIAMDNQGMWN 496 (545)
T ss_pred CCeeeCCCc--eEEEECCCCCCCcccc--ccCCCCCCCccceEEeCCC-----------CEEEEEEEccCCeEEe
Confidence 567777654 5666 77776652100 0000 00112577777764 3578888888888 65
No 150
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=1.7e+02 Score=22.84 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred ccccccccC-cceEEEEEeceEEEEEEeCCCcEEEEEEecCCEEEeCCCCceeeeecCC
Q 029096 93 NFFEEHLHT-DEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTD 150 (199)
Q Consensus 93 ~f~~eH~H~-ddEvr~il~G~g~f~v~~~~d~~~ri~~~~GDlI~vPaG~~HrF~~~~~ 150 (199)
.+++|-.-. -.|..++--|.|..+ ..++-+.+.+++||-+.+|.-=---+.++.+
T Consensus 33 ilLPEks~~K~~~g~VvavGpG~~~---~~G~~v~~~Vk~Gd~VLlpeygGt~V~l~~~ 88 (104)
T KOG1641|consen 33 ILLPEKSVGKLLQGTVVAVGPGSRD---KGGEIVPVSVKVGDRVLLPEYGGTKVKLGDE 88 (104)
T ss_pred eEeccccccccceEEEEEEcCcccc---CCCCCcCccccCCCEEEeeccCCcEEeccCC
Confidence 556666544 378999999999876 3466678899999999999876666776644
No 151
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=21.36 E-value=2.2e+02 Score=20.31 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=33.4
Q ss_pred hHHhhcCeEEEEeCCCCccChHHHHHHHHhcCCCeeeeEEECCCCCCChHHHH
Q 029096 39 DQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKI 91 (199)
Q Consensus 39 ~~L~~lGV~~w~~~~~~~~~~~~l~~l~~e~gY~~~Dvv~i~p~~~p~~e~~~ 91 (199)
+.|.++||.|..++.... ....+.|++-.|..+.=+|-+.......+++..
T Consensus 31 ~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~ 81 (90)
T cd03028 31 QILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVK 81 (90)
T ss_pred HHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHH
Confidence 678899999988876532 334466666678777666777655445555544
No 152
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=21.13 E-value=1.6e+02 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=17.7
Q ss_pred ceEEEEEEeCCCcEE----------EEEEecCCEEEe
Q 029096 111 GSGYFDVRDRNEKWI----------RIWVKKGGMIVL 137 (199)
Q Consensus 111 G~g~f~v~~~~d~~~----------ri~~~~GDlI~v 137 (199)
|.+.|.|...++..+ +|++.+||+|.|
T Consensus 43 Gn~~f~V~c~dG~~rLa~I~GKmRK~IWI~~GD~VlV 79 (155)
T PTZ00329 43 GNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDIILV 79 (155)
T ss_pred CCCEEEEEECCCCEEEEEeeccceeeEEecCCCEEEE
Confidence 456666654444322 577889999888
No 153
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=21.10 E-value=73 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=23.8
Q ss_pred ecCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 130 KKGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 130 ~~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
-.|--+-|||||.-||..+....+..+-|
T Consensus 56 A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 56 AFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred hcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 35888999999999999999877666644
No 154
>PRK13201 ureB urease subunit beta; Reviewed
Probab=20.51 E-value=73 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=23.7
Q ss_pred cCCEEEeCCCCceeeeecCCCcEEEEEE
Q 029096 131 KGGMIVLPAGCYHRFTLDTDNYIKAMRL 158 (199)
Q Consensus 131 ~GDlI~vPaG~~HrF~~~~~~~~~alRl 158 (199)
-|--|-|||||.-||..++...+..+.|
T Consensus 57 ~G~RLdIPAGTAVRFEPG~~k~V~LV~i 84 (136)
T PRK13201 57 YGKHLDIPAGAAVRFEPGDKKEVQLVEY 84 (136)
T ss_pred cCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 4888999999999999998877766655
Done!