BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029098
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
           GN=PUB50 PE=3 SV=1
          Length = 765

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 93  ESSFFSFDVANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVK 151
           E+     +V   +G++ E + Y+AVG   Q     + W L+   N    I L+H+    +
Sbjct: 3   ETKTHELEVEAESGSRMEKV-YIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQ 61

Query: 152 -FVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194
            FV +P GKLP + V+ E+L+     E  K  +LL K++  C +
Sbjct: 62  DFVYTPFGKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGK 105


>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
           PE=2 SV=2
          Length = 834

 Score = 40.4 bits (93), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 113 IYVAVGKSQS-SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
           I+VAV K  + S   L W L++       I LIHV    + +P    K P   V  E++ 
Sbjct: 47  IFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEEEVR 104

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKV 197
            F  +E  K   +L  +L  C Q  V
Sbjct: 105 VFREKEREKVHMILDDYLRICQQRGV 130


>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
           PE=1 SV=2
          Length = 835

 Score = 31.6 bits (70), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLG-KLPRNQVNPEQL 170
           + VA+  S  S   ++W +        + F L+H+ P +  VP+P+G  +P ++V  + +
Sbjct: 22  VVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVV 81

Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKV 197
             +  +   +  ++L+ +     + KV
Sbjct: 82  TAYRQEILWQSEEMLKPYTKLFVRRKV 108


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.123    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,237,677
Number of Sequences: 539616
Number of extensions: 2835000
Number of successful extensions: 22633
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 19820
Number of HSP's gapped (non-prelim): 2079
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.9 bits)