BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029099
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic
OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2
Length = 382
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 142/169 (84%)
Query: 1 MLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITAT 60
+LL A++CGY+YQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS+ E L ++
Sbjct: 197 LLLASAILCGYVYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGR 256
Query: 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 120
VLS+S+LVG TTSLILFCSHFHQV+GD VGK SPLVRLGTE+G+ VV+W + +LYS+L
Sbjct: 257 VLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLL 316
Query: 121 AIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVR 169
+GL+R LPL C +C +T P+G LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 317 VLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYYCVR 365
>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA
PE=3 SV=1
Length = 307
Score = 120 bits (300), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 10/181 (5%)
Query: 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATV 61
L+ A+ GY YQ PPFRL Y GLGE +C FGP A A Y + S + +
Sbjct: 129 LIGVAIFLGYTYQGPPFRLGYLGLGELICLITFGPLAIAAAYY-------SQSQSFSWNL 181
Query: 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 121
L+ S+ VG++T++ILFCSHFHQVE D GK SP+VRLGT+ GS V+ +V+ LY L+ A
Sbjct: 182 LTPSVFVGISTAIILFCSHFHQVEDDLAAGKKSPIVRLGTKLGSQVLTLSVVSLY-LITA 240
Query: 122 IG-LSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 180
IG L P + + A + P ++ +V + H ++ K+ V H G + A
Sbjct: 241 IGVLCHQAPWQTLLIIA-SLPWAVQLIRHVGQYHDQPEQVSNCKFIAVNLHFFSGMLMAA 299
Query: 181 G 181
G
Sbjct: 300 G 300
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 11 YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL-GSTRENLCLSITATVLSASLLVG 69
YIY PP +L G G FA A Y+ L + L ++T V+ +LL
Sbjct: 223 YIYSAPPLKLKQNGW--------VGNFALGASYISLPWWAGQALFGTLTPDVVVLTLLYS 274
Query: 70 LTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKW 110
+ I + F VEGDR +G S V GTE KW
Sbjct: 275 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTE----TAKW 311
>sp|P44739|MENA_HAEIN 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=menA PE=3 SV=1
Length = 308
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 27 EPLCFAAFGPFATTAFYLLLG--STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 84
+P + G + F+ LLG T SI + ++ ++ GL S +L ++ +
Sbjct: 150 KPYGYMGLGDISVLVFFGLLGVGGTYYLQTHSIDSHIILPAIGSGLLASAVLNINNLRDI 209
Query: 85 EGDRNVGKMSPLVRLGTERGSV 106
E D GK + VRLG +G V
Sbjct: 210 EQDAKAGKNTLAVRLGAYKGRV 231
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 11 YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYL-LLGSTRENLCLSITATVLSASLLVG 69
YIY PP +L G G FA A Y+ L + L ++T ++ + L
Sbjct: 212 YIYSAPPLKLKQNGW--------IGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYS 263
Query: 70 LTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKW 110
+ I + F VEGDR +G S V G E KW
Sbjct: 264 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGME----TAKW 300
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 11 YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYL-LLGSTRENLCLSITATVLSASLLVG 69
YIY PP +L G G FA A Y+ L + L ++T ++ + L
Sbjct: 214 YIYSAPPLKLKQNGW--------IGNFALGASYIGLPWWAGQALFGTLTPDIVVLTCLYS 265
Query: 70 LTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKW 110
+ I + F +EGDR +G S V G E KW
Sbjct: 266 IAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGME----TAKW 302
>sp|P65650|MENA_MYCTU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium tuberculosis GN=menA PE=3 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 2 LLTCAVIC---GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSIT 58
L+ IC ++Y Y G GE F FGP A +LG T+ L +
Sbjct: 115 LIAVGAICIAGAWLYTGGSKPYGYAGFGELAVFVFFGPVA------VLG-TQYTQALRVD 167
Query: 59 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTER 103
L+ ++ G + +L ++ + D K++ VRLG R
Sbjct: 168 WVGLAQAVATGALSCSVLVANNLRDIPTDARADKITLAVRLGDAR 212
>sp|P65651|MENA_MYCBO Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=menA PE=3 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 2 LLTCAVIC---GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSIT 58
L+ IC ++Y Y G GE F FGP A +LG T+ L +
Sbjct: 115 LIAVGAICIAGAWLYTGGSKPYGYAGFGELAVFVFFGPVA------VLG-TQYTQALRVD 167
Query: 59 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTER 103
L+ ++ G + +L ++ + D K++ VRLG R
Sbjct: 168 WVGLAQAVATGALSCSVLVANNLRDIPTDARADKITLAVRLGDAR 212
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 6 AVICGYIYQCPPFRLSYQGLGEP----LCFAAFGPFATTAFYLLLGSTRENLCLSITATV 61
V+ + Y P RL G P LC+ P+ T A L G+ + +
Sbjct: 127 GVLAAWAYSVEPIRLKRSGWWGPGLVALCYEGL-PWFTGAAVLSAGAP--------SFFI 177
Query: 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTE 102
++ +LL I+ + F +EGDR G S V LG E
Sbjct: 178 VTVALLYAFGAHGIMTLNDFKALEGDRQHGVRSLPVMLGPE 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,228,868
Number of Sequences: 539616
Number of extensions: 2464263
Number of successful extensions: 6185
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6175
Number of HSP's gapped (non-prelim): 14
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)