Query 029099
Match_columns 199
No_of_seqs 135 out of 1131
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07419 1,4-dihydroxy-2-napht 100.0 1E-42 2.3E-47 303.1 21.1 180 2-189 124-303 (304)
2 TIGR02235 menA_cyano-plnt 1,4- 100.0 5E-42 1.1E-46 296.6 20.0 175 2-184 111-285 (285)
3 PLN02922 prenyltransferase 100.0 1.8E-40 3.8E-45 290.4 20.5 184 2-185 128-314 (315)
4 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2.3E-40 4.9E-45 285.3 20.2 177 2-187 126-302 (303)
5 TIGR00751 menA 1,4-dihydroxy-2 100.0 5.5E-40 1.2E-44 283.7 18.9 171 2-181 114-284 (284)
6 PRK13387 1,4-dihydroxy-2-napht 100.0 3.1E-39 6.6E-44 282.9 20.3 185 2-187 119-316 (317)
7 PRK05951 ubiA prenyltransferas 100.0 4E-34 8.8E-39 248.4 20.5 172 2-187 121-292 (296)
8 PRK06080 1,4-dihydroxy-2-napht 100.0 2.6E-33 5.6E-38 242.3 20.2 174 3-185 119-292 (293)
9 PRK13105 ubiA prenyltransferas 100.0 3.2E-27 7E-32 203.9 18.6 164 2-181 110-276 (282)
10 TIGR01476 chlor_syn_BchG bacte 99.9 1.7E-26 3.6E-31 199.1 17.9 166 2-178 111-277 (283)
11 TIGR02056 ChlG chlorophyll syn 99.9 3.5E-26 7.6E-31 199.5 18.7 162 2-175 133-296 (306)
12 KOG4581 Predicted membrane pro 99.9 7.7E-25 1.7E-29 182.2 4.9 175 6-195 184-358 (359)
13 PRK07566 bacteriochlorophyll/c 99.9 8.1E-23 1.8E-27 179.0 17.8 164 2-176 137-302 (314)
14 PLN00012 chlorophyll synthetas 99.9 1.6E-22 3.5E-27 180.8 18.8 166 3-179 203-369 (375)
15 PRK12872 ubiA prenyltransferas 99.9 1.3E-20 2.8E-25 162.2 18.4 144 2-153 109-254 (285)
16 PRK12887 ubiA tocopherol phyty 99.9 1.8E-20 3.9E-25 163.8 18.4 128 2-130 125-253 (308)
17 PRK12875 ubiA prenyltransferas 99.8 1.4E-18 3E-23 150.3 18.7 108 4-121 120-227 (282)
18 PRK13591 ubiA prenyltransferas 99.8 2.5E-19 5.5E-24 155.8 13.9 137 2-152 124-271 (307)
19 PRK12392 bacteriochlorophyll c 99.8 5.6E-19 1.2E-23 155.8 16.2 141 4-152 132-273 (331)
20 PRK12884 ubiA prenyltransferas 99.7 2.9E-16 6.3E-21 134.9 17.5 133 3-147 110-243 (279)
21 PF01040 UbiA: UbiA prenyltran 99.7 7.4E-17 1.6E-21 135.2 13.4 95 3-106 98-193 (257)
22 PRK12847 ubiA 4-hydroxybenzoat 99.7 7.3E-16 1.6E-20 133.2 16.6 165 2-184 119-283 (285)
23 TIGR01475 ubiA_other putative 99.7 3.4E-15 7.3E-20 128.8 17.1 170 3-187 111-281 (282)
24 PRK12869 ubiA protoheme IX far 99.7 5.7E-15 1.2E-19 127.4 17.7 102 7-118 117-218 (279)
25 PLN02878 homogentisate phytylt 99.7 4.5E-15 9.7E-20 127.6 16.3 120 4-124 98-221 (280)
26 PRK12888 ubiA prenyltransferas 99.7 6.7E-15 1.5E-19 127.4 17.3 168 4-187 115-282 (284)
27 PRK12883 ubiA prenyltransferas 99.6 5.5E-14 1.2E-18 120.9 18.1 136 3-152 110-246 (277)
28 PRK09573 (S)-2,3-di-O-geranylg 99.6 1.1E-13 2.4E-18 119.2 17.3 137 3-152 110-248 (279)
29 PRK12886 ubiA prenyltransferas 99.6 1.9E-13 4.1E-18 118.7 18.3 116 4-130 118-233 (291)
30 TIGR01473 cyoE_ctaB protoheme 99.6 2E-13 4.3E-18 117.7 18.1 117 4-130 112-229 (280)
31 PRK12878 ubiA 4-hydroxybenzoat 99.6 1.8E-13 4E-18 120.1 18.1 167 2-187 146-313 (314)
32 PRK12848 ubiA 4-hydroxybenzoat 99.6 1E-13 2.2E-18 119.7 16.0 117 3-130 117-233 (282)
33 TIGR01474 ubiA_proteo 4-hydrox 99.6 1.7E-13 3.7E-18 118.3 17.0 165 2-185 114-279 (281)
34 PRK12871 ubiA prenyltransferas 99.6 2.4E-13 5.2E-18 118.5 17.0 165 3-184 129-293 (297)
35 PRK13595 ubiA prenyltransferas 99.6 2.3E-13 5.1E-18 118.0 16.6 158 2-180 123-280 (292)
36 PRK12870 ubiA 4-hydroxybenzoat 99.5 2.2E-13 4.8E-18 118.2 15.4 169 3-187 121-289 (290)
37 PRK12874 ubiA prenyltransferas 99.5 7.9E-13 1.7E-17 114.9 18.2 166 4-187 123-289 (291)
38 PRK12882 ubiA prenyltransferas 99.5 6.2E-13 1.3E-17 114.3 16.6 108 3-121 111-219 (276)
39 PRK04375 protoheme IX farnesyl 99.5 1.3E-12 2.8E-17 113.7 17.2 112 9-130 127-238 (296)
40 PRK13106 ubiA prenyltransferas 99.3 1.8E-10 4E-15 100.6 16.6 171 4-188 125-297 (300)
41 COG0382 UbiA 4-hydroxybenzoate 99.1 3.7E-09 8.1E-14 91.5 17.2 116 2-129 121-237 (289)
42 PLN02809 4-hydroxybenzoate non 99.1 5.5E-09 1.2E-13 90.9 17.0 164 3-187 120-287 (289)
43 PRK12895 ubiA prenyltransferas 99.1 3.6E-09 7.8E-14 91.9 15.6 161 19-191 124-285 (286)
44 PRK13362 protoheme IX farnesyl 99.1 1E-08 2.2E-13 89.9 18.3 92 9-110 130-221 (306)
45 PRK12876 ubiA prenyltransferas 99.1 1.1E-08 2.4E-13 89.4 17.3 169 3-186 122-296 (300)
46 PRK12873 ubiA prenyltransferas 98.7 1.3E-06 2.8E-11 76.3 15.5 107 5-122 125-232 (294)
47 PRK13592 ubiA prenyltransferas 98.4 9.8E-06 2.1E-10 70.7 13.3 106 5-119 116-233 (299)
48 PLN02776 prenyltransferase 98.2 0.00016 3.5E-09 64.4 18.4 96 10-116 113-210 (341)
49 COG0109 CyoE Polyprenyltransfe 96.1 0.075 1.6E-06 46.7 10.5 133 10-152 136-269 (304)
50 COG0382 UbiA 4-hydroxybenzoate 95.9 0.2 4.3E-06 43.3 12.5 39 59-97 47-88 (289)
51 PRK12873 ubiA prenyltransferas 95.2 0.37 7.9E-06 42.2 11.5 42 61-102 46-88 (294)
52 PRK12324 phosphoribose diphosp 94.8 2.3 5.1E-05 37.2 15.3 81 4-95 122-203 (295)
53 PRK12884 ubiA prenyltransferas 93.9 1.2 2.6E-05 38.1 11.5 41 60-101 38-78 (279)
54 PRK12324 phosphoribose diphosp 93.5 0.96 2.1E-05 39.6 10.3 55 61-115 48-106 (295)
55 PF01040 UbiA: UbiA prenyltran 93.5 1.3 2.8E-05 36.7 10.8 36 68-103 32-68 (257)
56 TIGR02056 ChlG chlorophyll syn 93.5 1.1 2.5E-05 39.1 10.9 51 69-120 64-117 (306)
57 TIGR01475 ubiA_other putative 93.3 3.4 7.4E-05 35.5 13.5 50 60-109 37-90 (282)
58 PLN02809 4-hydroxybenzoate non 93.2 2.4 5.2E-05 36.9 12.4 42 62-103 48-90 (289)
59 PRK08238 hypothetical protein; 92.7 7.4 0.00016 36.4 15.6 74 5-92 303-377 (479)
60 PLN02776 prenyltransferase 92.6 7.4 0.00016 34.9 15.1 52 61-112 31-86 (341)
61 PRK12882 ubiA prenyltransferas 92.5 3.7 8E-05 35.1 12.5 53 62-115 41-96 (276)
62 TIGR01474 ubiA_proteo 4-hydrox 92.3 6.2 0.00013 34.0 13.7 41 62-102 43-84 (281)
63 PRK12869 ubiA protoheme IX far 92.1 5.9 0.00013 34.1 13.3 56 61-116 38-97 (279)
64 PRK13362 protoheme IX farnesyl 92.1 7.9 0.00017 34.0 15.4 53 64-116 52-108 (306)
65 PRK04375 protoheme IX farnesyl 91.5 8.5 0.00018 33.4 13.7 57 62-118 47-107 (296)
66 PRK12875 ubiA prenyltransferas 91.4 2.9 6.3E-05 36.3 10.6 19 77-95 63-81 (282)
67 PRK12876 ubiA prenyltransferas 90.9 6.1 0.00013 34.8 12.2 42 60-101 48-90 (300)
68 PRK12847 ubiA 4-hydroxybenzoat 90.8 3.6 7.9E-05 35.4 10.6 49 61-109 47-99 (285)
69 PRK12895 ubiA prenyltransferas 90.7 11 0.00023 32.9 14.5 54 60-113 38-95 (286)
70 PRK12872 ubiA prenyltransferas 90.6 6.1 0.00013 33.7 11.8 31 62-92 39-69 (285)
71 PRK13592 ubiA prenyltransferas 90.2 8.1 0.00017 34.1 12.2 62 57-118 44-107 (299)
72 PRK09573 (S)-2,3-di-O-geranylg 90.1 11 0.00023 32.4 12.9 56 61-116 39-96 (279)
73 PRK08238 hypothetical protein; 90.0 4.4 9.4E-05 37.9 11.1 56 61-116 228-287 (479)
74 PRK12883 ubiA prenyltransferas 89.0 7.2 0.00016 33.3 11.0 45 67-112 45-92 (277)
75 PRK07566 bacteriochlorophyll/c 87.7 4.1 8.9E-05 35.8 8.8 47 70-116 76-124 (314)
76 PRK13595 ubiA prenyltransferas 87.6 17 0.00038 31.8 12.5 34 74-108 62-98 (292)
77 PRK05951 ubiA prenyltransferas 87.5 11 0.00025 32.6 11.4 62 57-118 37-106 (296)
78 PRK12848 ubiA 4-hydroxybenzoat 87.4 18 0.00039 31.1 15.2 50 66-115 49-102 (282)
79 PRK12886 ubiA prenyltransferas 87.4 19 0.0004 31.3 14.3 41 61-101 44-85 (291)
80 PRK12887 ubiA tocopherol phyty 87.3 4.8 0.0001 35.4 8.9 32 77-109 71-105 (308)
81 PLN00012 chlorophyll synthetas 87.0 12 0.00026 33.9 11.6 50 68-118 132-184 (375)
82 PRK13105 ubiA prenyltransferas 86.9 12 0.00025 32.7 11.0 21 77-97 52-72 (282)
83 PRK12392 bacteriochlorophyll c 86.7 6.1 0.00013 35.1 9.4 44 74-118 65-111 (331)
84 PRK13591 ubiA prenyltransferas 86.4 6.7 0.00014 34.7 9.3 27 64-90 63-89 (307)
85 TIGR01473 cyoE_ctaB protoheme 86.3 20 0.00044 30.6 14.7 56 61-116 37-96 (280)
86 PRK13106 ubiA prenyltransferas 86.1 23 0.00049 31.1 13.8 31 61-91 51-81 (300)
87 PRK12870 ubiA 4-hydroxybenzoat 85.7 17 0.00037 31.5 11.5 40 62-101 49-89 (290)
88 PRK12871 ubiA prenyltransferas 85.0 18 0.00039 31.6 11.4 54 65-118 47-113 (297)
89 PRK12878 ubiA 4-hydroxybenzoat 84.4 28 0.0006 30.6 13.9 31 61-91 74-104 (314)
90 PRK12874 ubiA prenyltransferas 82.7 31 0.00068 29.9 14.6 30 63-92 51-80 (291)
91 TIGR01476 chlor_syn_BchG bacte 81.8 10 0.00022 32.6 8.4 46 70-115 49-96 (283)
92 PRK12888 ubiA prenyltransferas 81.7 34 0.00073 29.6 15.8 32 61-92 41-72 (284)
93 PRK13387 1,4-dihydroxy-2-napht 74.2 57 0.0012 28.7 11.0 68 57-124 36-110 (317)
94 KOG1381 Para-hydroxybenzoate-p 65.3 58 0.0013 28.7 8.8 99 80-187 245-345 (353)
95 TIGR00751 menA 1,4-dihydroxy-2 64.7 94 0.002 26.9 11.1 62 57-118 25-93 (284)
96 TIGR02235 menA_cyano-plnt 1,4- 63.6 99 0.0021 26.8 11.4 32 57-88 32-66 (285)
97 PLN02878 homogentisate phytylt 63.2 75 0.0016 27.8 9.2 25 76-101 40-64 (280)
98 PRK07419 1,4-dihydroxy-2-napht 58.3 1.3E+02 0.0028 26.4 11.2 33 57-89 45-80 (304)
99 PRK06080 1,4-dihydroxy-2-napht 55.2 99 0.0021 26.5 8.7 58 58-115 36-100 (293)
100 cd00867 Trans_IPPS Trans-Isopr 51.9 8.6 0.00019 31.5 1.5 27 74-100 161-197 (236)
101 COG0109 CyoE Polyprenyltransfe 47.1 2.1E+02 0.0045 25.4 11.2 62 57-118 49-115 (304)
102 COG5477 Predicted small integr 36.9 1.6E+02 0.0034 21.2 6.7 40 93-132 43-82 (97)
103 TIGR01190 ccmB heme exporter p 35.4 2.6E+02 0.0057 23.2 9.5 94 19-112 7-102 (211)
104 PRK10299 PhoPQ regulatory prot 35.2 32 0.00069 21.9 1.8 23 73-95 19-41 (47)
105 COG3389 Uncharacterized protei 34.4 1.8E+02 0.004 25.0 6.7 58 95-152 51-108 (277)
106 PF09928 DUF2160: Predicted sm 29.4 2.2E+02 0.0048 20.5 8.2 51 77-132 23-73 (88)
107 PRK00220 putative glycerol-3-p 29.3 1.9E+02 0.0041 23.8 6.1 44 63-107 15-58 (198)
108 cd00385 Isoprenoid_Biosyn_C1 I 28.2 16 0.00034 28.7 -0.5 32 72-103 153-186 (243)
109 cd00683 Trans_IPPS_HH Trans-Is 26.8 25 0.00055 29.6 0.5 25 74-98 154-178 (265)
110 PF03366 YEATS: YEATS family; 26.1 25 0.00054 24.9 0.3 16 14-29 39-54 (84)
111 TIGR03464 HpnC squalene syntha 24.2 36 0.00077 28.9 0.9 26 73-98 145-170 (266)
112 TIGR03465 HpnD squalene syntha 22.6 37 0.00081 28.7 0.7 26 72-97 143-168 (266)
113 TIGR00023 acyl-phosphate glyce 22.6 3.2E+02 0.0069 22.4 6.2 42 63-105 15-56 (196)
114 COG3097 Uncharacterized protei 22.5 37 0.00081 24.9 0.6 17 83-99 11-27 (106)
115 PF12046 DUF3529: Protein of u 22.4 2.1E+02 0.0045 23.3 4.9 78 74-152 51-132 (173)
116 PF03379 CcmB: CcmB protein; 21.7 4.6E+02 0.0099 21.5 9.5 92 19-111 10-104 (215)
117 PF02683 DsbD: Cytochrome C bi 21.5 3.7E+02 0.008 21.7 6.5 9 85-93 30-38 (211)
118 PF05360 YiaAB: yiaA/B two hel 21.1 2.4E+02 0.0052 18.1 5.9 27 57-83 27-53 (53)
119 COG1575 MenA 1,4-dihydroxy-2-n 20.7 6E+02 0.013 22.5 10.3 54 57-110 41-101 (303)
No 1
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1e-42 Score=303.11 Aligned_cols=180 Identities=46% Similarity=0.760 Sum_probs=169.3
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+.++|++++|+||+||+|+||||+||++++++||++++.|+||+|+++ +++..++.|+|.++.++++|++||+
T Consensus 124 ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~-------~~~~~~~~sl~~gll~~~IL~~Nn~ 196 (304)
T PRK07419 124 LVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPS-------WSLIPLAASIILGLATSLILFCSHF 196 (304)
T ss_pred HHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 457889999999999999999999999999999999999999999998 6789999999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
||+|+||++||||++|++|+|+|+++|..+...+|++.+..+..|..|+++ +++++++|++.+.+|.+++++++++++.
T Consensus 197 rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~-Ll~ll~lPl~~~~~~~~~~~~~~~~~l~ 275 (304)
T PRK07419 197 HQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTT-LLSLLSLPFAIKLIRLVRENHDQPEKVS 275 (304)
T ss_pred cchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 7999999999999999988765677777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029099 162 MAKYYCVRFHALFGAALVAGLITARILV 189 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll~~~~~ 189 (199)
.++++|++.++++++++++|++++..++
T Consensus 276 ~~l~~t~~~~~l~g~l~~l~~~l~~~~~ 303 (304)
T PRK07419 276 NSKFIAVRFHFWSGLLLSLGLILAYLLP 303 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888999999999999999999988743
No 2
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=5e-42 Score=296.58 Aligned_cols=175 Identities=42% Similarity=0.747 Sum_probs=164.7
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+.++|++++|+||+||+|+||+|+||++++++||++++.++||+|+++ +++..++.|+|.++.+.+++++||+
T Consensus 111 lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~-------~~~~~~l~sl~~gl~~~~iL~~Nn~ 183 (285)
T TIGR02235 111 LVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS-------FSLIPWKASILVGLATTLILFCSHF 183 (285)
T ss_pred HHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc-------CcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456799999999999999999999999999999999999999999998 6799999999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
||+|+||++||||++||+|+|+|+++|..+...+|++.+..+..|..||++ +++++++|++.+++|+++++++++++..
T Consensus 184 rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~-ll~ll~lPl~~~~~~~~~~~~~~~~~l~ 262 (285)
T TIGR02235 184 HQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTT-LLALASIPWAVKLIRLVRQNHNNPEQIS 262 (285)
T ss_pred ccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 7999999999999999988765677777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAGLIT 184 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll 184 (199)
+++++|++.++++++++++|+++
T Consensus 263 ~~l~~t~~~~~~~g~l~~~g~~~ 285 (285)
T TIGR02235 263 NCKFIAVRFHFLSGILLTLGLLL 285 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 88889999999999999999863
No 3
>PLN02922 prenyltransferase
Probab=100.00 E-value=1.8e-40 Score=290.44 Aligned_cols=184 Identities=74% Similarity=1.281 Sum_probs=165.0
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCc---cccccccchHHHHHHHHHHHHHHHHHHHh
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGST---RENLCLSITATVLSASLLVGLTTSLILFC 78 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~---~~~~~~~~~~~~l~~slp~~l~~~~il~~ 78 (199)
+.++|++++|+||+||+|+||+|+||++++++||++++.++||+|++. .++...+++++.++.|+|.+++++++|++
T Consensus 128 iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~ 207 (315)
T PLN02922 128 LLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFC 207 (315)
T ss_pred HHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999883 11112236788999999999999999999
Q ss_pred cCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 029099 79 SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKG 158 (199)
Q Consensus 79 nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~ 158 (199)
||+||+|+||++||||++|++|+|+++++|..+...+|++++..+..|..|+++.+++++++|++.+..+.++++++++.
T Consensus 208 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~~~~~ 287 (315)
T PLN02922 208 SHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKDNA 287 (315)
T ss_pred ccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999999999999999999999999999999999987656888999999999888887655566
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHH
Q 029099 159 KIFMAKYYCVRFHALFGAALVAGLITA 185 (199)
Q Consensus 159 ~~~~~~~~t~~~~~l~~~ll~~glll~ 185 (199)
++...++.|++.++++++++++|++++
T Consensus 288 ~l~~~~~~t~~~~~l~g~ll~~g~~l~ 314 (315)
T PLN02922 288 KIFMAKYYCVRLHALFGAALALGLVLA 314 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777788889999999999999999864
No 4
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-40 Score=285.32 Aligned_cols=177 Identities=23% Similarity=0.370 Sum_probs=166.0
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+..+|+++|++||+||+|++|.|+||++++++||++.+.|+||+|+++ +++..++.|+|+++.+++++++||+
T Consensus 126 lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~-------~~~~~ll~slp~gil~~~Il~aNNi 198 (303)
T COG1575 126 LGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR-------LSWAILLPSLPVGILIANILLANNL 198 (303)
T ss_pred HHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHHhccc
Confidence 567899999999999999999999999999999999999999999998 6799999999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
||+|+|+++||+|+|||+|+++++.+|..++..+|++.+++.+.+..|+|. ++.++++|+++|.+|++++++..+ +..
T Consensus 199 rDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~-ll~ll~~Pl~ir~~r~v~~~~~~~-~~~ 276 (303)
T COG1575 199 RDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG-LLFLLALPLAIRAARPVRQNQVPA-TLV 276 (303)
T ss_pred ccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHhccCch-HHH
Confidence 999999999999999999999999999999999999999999999999988 789999999999999999986444 555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
+..+.+.+.+..+++++.+|++++.+
T Consensus 277 p~l~~~~~~~~~~~~l~~~~i~~~~l 302 (303)
T COG1575 277 PMLKNTVKANLLWNLLLAVGILLSQL 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999999999988754
No 5
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=5.5e-40 Score=283.72 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=158.4
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+.++|++++++||+||+|+||+|+||++++++||++++.|+||+|+++ ++++.++.++|.++++++++++||+
T Consensus 114 lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~-------~~~~~ll~sl~~g~l~~~il~~Nn~ 186 (284)
T TIGR00751 114 LGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHR-------VDWVGILPAVATGLLACAVLNINNL 186 (284)
T ss_pred HHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456788899999999999999999999999999999999999999998 6788999999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
||+|+|+++||||++||+|+|+|+++|..++..+|++.+.++..+..|+|+ +++++++|++.+.+|.+++++ +++++.
T Consensus 187 ~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~-ll~ll~lPl~~~~~~~~~~~~-~~~~l~ 264 (284)
T TIGR00751 187 RDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWC-VLFLLAAPLLLKAAGPVRSGR-GPRELR 264 (284)
T ss_pred ccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 999999999999999999999999999999999999999988888889987 689999999999999998753 456676
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAG 181 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~g 181 (199)
+..++|++.++++++++++|
T Consensus 265 ~~l~~t~~~~~l~~~l~~ig 284 (284)
T TIGR00751 265 PVLRDTGLAMLLWNLLFALG 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 77888999999999999875
No 6
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=3.1e-39 Score=282.93 Aligned_cols=185 Identities=18% Similarity=0.153 Sum_probs=162.7
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccc-----cc----h----HHHHHHHHHH
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCL-----SI----T----ATVLSASLLV 68 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~-----~~----~----~~~l~~slp~ 68 (199)
+.++|++++++||+||+|+||+|+||++++++||++++.|+||+|++..++... .+ + .+.++.|+|+
T Consensus 119 igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~ 198 (317)
T PRK13387 119 IGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPI 198 (317)
T ss_pred HHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999988431100 00 0 0223489999
Q ss_pred HHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q 029099 69 GLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVS 148 (199)
Q Consensus 69 ~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~ 148 (199)
++.+++++++||+||+|+||++||||+|+++|+|+|+++|..+...+|++.+..+..|..|+++ +++++++|++.+.+|
T Consensus 199 g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~-ll~ll~lP~~~~~~~ 277 (317)
T PRK13387 199 IFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWA-LLSFLTLRKPISNLQ 277 (317)
T ss_pred HHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred HHHhhccccchhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 149 YVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
.++++++++++.....+.+++.+..+++++++|++++.+
T Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~~ 316 (317)
T PRK13387 278 SFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQYL 316 (317)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998876666666677778999999999999999998653
No 7
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-34 Score=248.39 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=155.7
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+.++|+++++.||+||+++||||+||+.++++||++++.|+||+|++. +++..+..++|.++++.+++++||+
T Consensus 121 l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~-------~~~~~~~~sl~~~l~~~~il~~n~~ 193 (296)
T PRK05951 121 LALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGN-------LSSPNLLAGVPLGLLMALVLLSNNL 193 (296)
T ss_pred HHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999999999999999999999999998 5688999999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
||+|+||++||||+|+++|+|++ ++|..+...+|++++.++..|..|+++ +++++++|++.+..+..+++. +.++
T Consensus 194 ~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~ll~lp~~~~~~~~~~~~~-~~~~-- 268 (296)
T PRK05951 194 RDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLIS-LWALLSLLVAYALCLWQLRKF-PPDP-- 268 (296)
T ss_pred ccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHhhC-cccc--
Confidence 99999999999999999999999 889899999999999999999999987 688999999999888877653 2222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
.. .+++.+..+++++++|++++..
T Consensus 269 ~~--~~~~~~~~~g~l~~~~~~l~~~ 292 (296)
T PRK05951 269 DE--ATVQLFMLFGYLYILATLLSAL 292 (296)
T ss_pred cH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4999999999999999998764
No 8
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=2.6e-33 Score=242.31 Aligned_cols=174 Identities=21% Similarity=0.296 Sum_probs=159.7
Q ss_pred hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
.+++++++++||.||+++||+|+||+.+++++|++++.+++|.|+++ +++++++.++|.++++.+++++||+|
T Consensus 119 ~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~n~~~ 191 (293)
T PRK06080 119 GLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGT-------VDSAVFLPALPCGLLIGAVLLANNIR 191 (293)
T ss_pred HHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677889999999999999999999999999999999999999988 56889999999999999999999999
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM 162 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~ 162 (199)
|+|+||++||||+|+++|+|++++++..+..++|++.+.....|..|++. +++++++|.+.+.++.+++++ ++++...
T Consensus 192 D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~-ll~ll~~p~~~~~~~~~~~~~-~~~~~~~ 269 (293)
T PRK06080 192 DIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWG-LLFLLSLPLAVKAARPVLRKQ-KPETLIP 269 (293)
T ss_pred cchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 99999999999999999999999999999999999999999999899987 689999999999999988765 4444556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 029099 163 AKYYCVRFHALFGAALVAGLITA 185 (199)
Q Consensus 163 ~~~~t~~~~~l~~~ll~~glll~ 185 (199)
..+.+++.+..+++++++|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
T PRK06080 270 ALKATGKTNLLFGLLFAIGLLLS 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 66689999999999999999874
No 9
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=3.2e-27 Score=203.89 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=141.2
Q ss_pred hhHHHHHHhhccCCCCcccccccchHH--HHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEP--LCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS 79 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~--~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n 79 (199)
+..++++.++.||+||.|+||+|+||. .++.++|. .+.|+++. ++. +++..++.+.++++++.++...|
T Consensus 110 l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~~~-~~~-------~~~~~~l~~~~~~~~~~a~~ii~ 180 (282)
T PRK13105 110 VLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP-ALYGLVLA-GAP-------FTAALWAVLAAFFLWGMASHAFG 180 (282)
T ss_pred HHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH-HHHHHHHh-hcc-------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999 67777787 88888888 555 56778889999999999999999
Q ss_pred CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH-hhccccc
Q 029099 80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVE-ENHKDKG 158 (199)
Q Consensus 80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~-~~~~~~~ 158 (199)
|+||+|+||++||||+|+++|+|++.+++..+...++++.+.. + .+. . ++.++++|++.+..|.+. ++ +++.
T Consensus 181 ~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~---~-~~~-~-~l~ll~~p~~~~~~~~~~~~~-~~~~ 253 (282)
T PRK13105 181 AVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLAL---P-WPG-W-LAAVLALPYVVNTARFWSVTD-ADCE 253 (282)
T ss_pred hCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHH---H-hHH-H-HHHHHHHHHHHHHHHHHhhcC-CCHH
Confidence 9999999999999999999999999999999999999888732 2 222 3 578899999999998877 44 3566
Q ss_pred hhcchHHHHHHHHHHHHHHHHHH
Q 029099 159 KIFMAKYYCVRFHALFGAALVAG 181 (199)
Q Consensus 159 ~~~~~~~~t~~~~~l~~~ll~~g 181 (199)
+.+++.+.+++.++++++++++.
T Consensus 254 ~l~~~l~~~~~~~~~~~~l~~~~ 276 (282)
T PRK13105 254 RANRGWRRFLWLNYVSGFLVTML 276 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999984
No 10
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.95 E-value=1.7e-26 Score=199.12 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=135.9
Q ss_pred hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH 80 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn 80 (199)
+.+++++.++.||.||+++||+| +||+.+++++|..+..+++..+. . +++..++.+++.++++.++++.||
T Consensus 111 l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~~~i~~~nd 182 (283)
T TIGR01476 111 FTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA-P-------LTWQSVVVALIYSLGAHGIMTLND 182 (283)
T ss_pred HHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhC-C-------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999998 79999999998888777776653 3 467888899999999999999999
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKI 160 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~ 160 (199)
+||+|+||++||||+|+++|+|++++++..+...+|++.+........|+++.++.++..|...+..|.+++++++.+
T Consensus 183 ~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~p~~~~~~~~~~~~~~~~~-- 260 (283)
T TIGR01476 183 FKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATIVFLLLVAQIYNQIKLFLRDPQQNY-- 260 (283)
T ss_pred ccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhChHHhh--
Confidence 999999999999999999999999999999999899877765444446665446777888988888888876532222
Q ss_pred cchHHHHHHHHHHHHHHH
Q 029099 161 FMAKYYCVRFHALFGAAL 178 (199)
Q Consensus 161 ~~~~~~t~~~~~l~~~ll 178 (199)
...+.|++.++.++.+.
T Consensus 261 -~~~~~~~~~~~~~~~~~ 277 (283)
T TIGR01476 261 -VRYNATANPFYVLGMLA 277 (283)
T ss_pred -HHhhhhcHHHHHHHHHH
Confidence 33446999999998765
No 11
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.95 E-value=3.5e-26 Score=199.54 Aligned_cols=162 Identities=22% Similarity=0.228 Sum_probs=131.8
Q ss_pred hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH 80 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn 80 (199)
+.++|++++++||+||+|+||+| +||+.++..++..++.+++ .++++ +++..++.+++.++++.++.+.||
T Consensus 133 l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~-a~~g~-------~~~~~~l~~~~~~l~~~~i~~~n~ 204 (306)
T TIGR02056 133 LALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGH-ALFGE-------LNPDIAVLTLIYSIAGLGIAIVND 204 (306)
T ss_pred HHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHH-HHhCC-------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999998 7999998888877776655 55666 568888999999999999999999
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGK 159 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~-g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~ 159 (199)
+||+|+|+++||||+||++|+|++++++..+...+|.+.+..... +..|++. ++.++++|.+.+..|.+++++ .+
T Consensus 205 ~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~ll~~p~~~~~~~~~~~~~---~~ 280 (306)
T TIGR02056 205 FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAA-ALVALIIPQITFQDKYFLKDP---LK 280 (306)
T ss_pred ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHHHHHHHHhCh---Hh
Confidence 999999999999999999999999999999988888877665544 4455544 678899999999999887643 22
Q ss_pred hcchHHHHHHHHHHHH
Q 029099 160 IFMAKYYCVRFHALFG 175 (199)
Q Consensus 160 ~~~~~~~t~~~~~l~~ 175 (199)
.....+.+++.....+
T Consensus 281 ~~~~~~~~~~~~~~~~ 296 (306)
T TIGR02056 281 NDVKYQASAQPFLVLG 296 (306)
T ss_pred hCcchhhhhhHHHHHH
Confidence 3233334776666555
No 12
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.90 E-value=7.7e-25 Score=182.24 Aligned_cols=175 Identities=19% Similarity=0.304 Sum_probs=153.8
Q ss_pred HHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChH
Q 029099 6 AVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVE 85 (199)
Q Consensus 6 ~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die 85 (199)
|+-.++.||+| +.+||..+||+...+.||++.++..|..|+|+. .|..+..++|.++-+-+|+++||.||.|
T Consensus 184 gls~sflytgg-igfkyialgdliili~fgpiavlfaf~~q~g~l-------~~~~l~yaiplalnteailhsnntrd~d 255 (359)
T KOG4581|consen 184 GLSGSFLYTGG-IGFKYIALGDLIILILFGPIAVLFAFAIQTGHL-------AIFPLGYAIPLALNTEAILHSNNTRDAD 255 (359)
T ss_pred CcccceeEecc-cceEEEeccCEEEEEeechHHHHHHHHHhcCce-------eEEeehheeeeccchHHHhccCCCcccc
Confidence 34467899998 599999999999999999999999999999994 4667789999999999999999999999
Q ss_pred hhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcchHH
Q 029099 86 GDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKY 165 (199)
Q Consensus 86 ~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
.||++|+.|+++.+|+..+..+|..+.+++|.+..++..- ...|. +++++++|.++.+.|++|++| .-+++ +.
T Consensus 256 ndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~--~si~~-~lplltip~afqiek~frneq-a~~~l-p~-- 328 (359)
T KOG4581|consen 256 NDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALH--CSISF-ALPLLTIPMAFQIEKQFRNEQ-AFHKL-PQ-- 328 (359)
T ss_pred cccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HhHHhhchhHHhHHHHhhhHh-hhhhc-ch--
Confidence 9999999999999999999999999999999998777543 35544 799999999999999999875 23333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 029099 166 YCVRFHALFGAALVAGLITARILVTKHIPK 195 (199)
Q Consensus 166 ~t~~~~~l~~~ll~~glll~~~~~~~~~~~ 195 (199)
+|+|+++.+|++++.++.++.-+++--.||
T Consensus 329 qtakln~~~gi~yv~~~~~ahqlpa~~l~k 358 (359)
T KOG4581|consen 329 QTAKLNFFFGIFYVFACCCAHQLPAFGLPK 358 (359)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence 599999999999999999998777777776
No 13
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.90 E-value=8.1e-23 Score=178.95 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=124.3
Q ss_pred hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHH-HHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFY-LLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS 79 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y-~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n 79 (199)
+.++++++++.||+||+++||++ +||+.+++++|..+..+++ +.+++. .++..++.+++.+++..+++..|
T Consensus 137 l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~-------~~~~~~l~~~~~~l~~~~~~~~~ 209 (314)
T PRK07566 137 AALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGL-------PSWPIVILALLYSLGAHGIMTLN 209 (314)
T ss_pred HHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhccCC-------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999 6999999999887765544 444334 56888999999999999999999
Q ss_pred CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 029099 80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGK 159 (199)
Q Consensus 80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~ 159 (199)
|+||+|+||++|+||+|+++|++++++++..++..+|++.+........+++..++.++..|.+....+..++. ++.+
T Consensus 210 d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~- 287 (314)
T PRK07566 210 DFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDP-LERD- 287 (314)
T ss_pred HHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCh-hhcC-
Confidence 99999999999999999999999999999999999988875553332233333345667788887776664332 2222
Q ss_pred hcchHHHHHHHHHHHHH
Q 029099 160 IFMAKYYCVRFHALFGA 176 (199)
Q Consensus 160 ~~~~~~~t~~~~~l~~~ 176 (199)
...+.+.+.+.+++.
T Consensus 288 --~~~~~~~~~~~~~~l 302 (314)
T PRK07566 288 --VWYNASAQPFYVLGM 302 (314)
T ss_pred --hhhhhhhhHHHHHHH
Confidence 222346666666543
No 14
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.90 E-value=1.6e-22 Score=180.81 Aligned_cols=166 Identities=22% Similarity=0.218 Sum_probs=129.2
Q ss_pred hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
.++|+++++.||+||+++||+++ |++..+..+|.++.++++ ..++. +++..++.+++.+++..++.+.||+
T Consensus 203 ~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a~~g~-------~s~~~illal~~~l~~lai~ivnd~ 274 (375)
T PLN00012 203 ALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-ALFGT-------LTPDVVVLTLLYSIAGLGIAIVNDF 274 (375)
T ss_pred HHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-HHcCC-------CCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35677889999999999999997 999888888887776665 55666 5688889999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
||+|+||++|+||+||++|++++++++..+.....++.+........+++..++.++.+|......+.+.++ +.+.+
T Consensus 275 ~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~~~---p~~~~ 351 (375)
T PLN00012 275 KSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLPD---PVKND 351 (375)
T ss_pred cchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHH
Confidence 999999999999999999999999998766666655554443322222322356677888888888877653 44444
Q ss_pred chHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALV 179 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~ 179 (199)
...+.+++.+++++.+.+
T Consensus 352 ~~~~~~a~~~~~~~~l~~ 369 (375)
T PLN00012 352 VKYQASAQPFLVFGLLVT 369 (375)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555568899888886543
No 15
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=1.3e-20 Score=162.17 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=122.3
Q ss_pred hhHHHHHHhhccCCCCc-cccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099 2 LLTCAVICGYIYQCPPF-RLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCS 79 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~-~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n 79 (199)
+.+++.++++.||.||. ++|+.| +||+.++..+|..++.+.++.+++. ++...++.++...+.+......|
T Consensus 109 ~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~fl~~~~~~~~~ 181 (285)
T PRK12872 109 IFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIREIVF 181 (285)
T ss_pred HHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHH
Confidence 35677788999999887 589876 7999999999999999998887765 45677888888888888888999
Q ss_pred CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 029099 80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEEN 153 (199)
Q Consensus 80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~ 153 (199)
|+||+|+||++|+||+|+++|+|++++++..+...+++..+.....|..|++. +..++..|......+.+.++
T Consensus 182 d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (285)
T PRK12872 182 DIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLL-LVLLLLLAYVLYYIIKLFAA 254 (285)
T ss_pred hcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998888888876 45566667766655555544
No 16
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.86 E-value=1.8e-20 Score=163.84 Aligned_cols=128 Identities=24% Similarity=0.323 Sum_probs=103.6
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHH-HHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLC-FAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH 80 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~-~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn 80 (199)
+.+++.++++.||.||+|+||+|++|..+ +...|.....|.|+...+... ....++...++.+++..+++.++.+.||
T Consensus 125 ~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~d 203 (308)
T PRK12887 125 TVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLG-GSVLIPPTVWLLTLFVLVFTFAIAIFKD 203 (308)
T ss_pred HHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999999999988654 445566666776553221100 0112567788899999999999999999
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 130 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~ 130 (199)
+||+|+||++|+||+|+++|++++.+++..+...+|+..+.....+..++
T Consensus 204 i~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~ 253 (308)
T PRK12887 204 IPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTV 253 (308)
T ss_pred ccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999888876665444
No 17
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.82 E-value=1.4e-18 Score=150.33 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=88.6
Q ss_pred HHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099 4 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 83 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D 83 (199)
+..++.++.||+||+|+||+|++|..++..+ .+++.++|++|+++ .++..+..+ .++++.++...||+||
T Consensus 120 l~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~~tg~-------~~~~~l~~a--~~l~~~~~~~in~i~D 189 (282)
T PRK12875 120 LAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAAYALVSGS-------LPPLLAVAG--GWLWAMGMHTFSAIPD 189 (282)
T ss_pred HHHHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHHHHHHcCC-------CcHHHHHHH--HHHHHHHHHHHHhccC
Confidence 4567899999999999999999998763333 46778999999987 445544444 4789999999999999
Q ss_pred hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHH
Q 029099 84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 121 (199)
Q Consensus 84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~ 121 (199)
+|+||++||||+|+++|+++++++...+...+-.+...
T Consensus 190 ie~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~ 227 (282)
T PRK12875 190 IEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAA 227 (282)
T ss_pred HHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887777666655444
No 18
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.81 E-value=2.5e-19 Score=155.85 Aligned_cols=137 Identities=17% Similarity=0.139 Sum_probs=100.6
Q ss_pred hhHHHHHHhhccCCC----Cccc---ccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH--
Q 029099 2 LLTCAVICGYIYQCP----PFRL---SYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT-- 72 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~----P~~l---~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~-- 72 (199)
+.+++.++++.||.| |.++ +|.|+||+++++++|.+.+.+.... ++. +..+.+.++..
T Consensus 124 l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~~~------------~~~~~~i~l~~~~ 190 (307)
T PRK13591 124 LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-CGS------------LIPVGLIFLFFGV 190 (307)
T ss_pred HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-hhh------------HHHHHHHHHHHHH
Confidence 457788899999998 8888 6677999999999998776432111 111 11222333333
Q ss_pred --HHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 029099 73 --SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYV 150 (199)
Q Consensus 73 --~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~ 150 (199)
......||+||+|+||++||||+|+++|++++++++..+..++|++++..+..|..|+.+ ...+-+++.-+--.+..
T Consensus 191 ~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~-~~~~~s~~~~l~~~~~~ 269 (307)
T PRK13591 191 KLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEP-IILLYSFVCGLICIQVY 269 (307)
T ss_pred HHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhhHHHHHHHHHHHHHH
Confidence 333478999999999999999999999999999999999999999999999999888644 23333454444444444
Q ss_pred Hh
Q 029099 151 EE 152 (199)
Q Consensus 151 ~~ 152 (199)
++
T Consensus 270 ~~ 271 (307)
T PRK13591 270 SS 271 (307)
T ss_pred cC
Confidence 44
No 19
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.81 E-value=5.6e-19 Score=155.83 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=105.2
Q ss_pred HHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 4 TCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
++++++++.||.||+++||+++ ||+.++++||...+.+. +++.++ +++..++.+.+.++++.+....||++
T Consensus 132 ~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~-~a~~g~-------~~~~~~~l~~~~~l~~~~~~~i~d~~ 203 (331)
T PRK12392 132 LAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSA-NALFSD-------IRPEVVWLAGLNFFMAIALIIMNDFK 203 (331)
T ss_pred HHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHH-HHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4568899999999999999985 99999999997666544 444455 56778888999999999999999999
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE 152 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~ 152 (199)
|+|+||+.|+||+|+++|++++.++.........++.......-..++......++..|......+..|+
T Consensus 204 D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~r~ 273 (331)
T PRK12392 204 SVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQLYRD 273 (331)
T ss_pred chhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988766664555555444333222332323334444555555555544
No 20
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.73 E-value=2.9e-16 Score=134.92 Aligned_cols=133 Identities=15% Similarity=0.052 Sum_probs=102.5
Q ss_pred hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
.+++++.++.||. ++|++++ ||+.+++.+|.....|.++++. . +...+..+....+++......||+
T Consensus 110 ~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--------~~~~~~l~~~~~~~~~~~~~~~~~ 177 (279)
T PRK12884 110 VILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIAVGE-L--------NEAVILLAAMAFLMTLGREIMKDI 177 (279)
T ss_pred HHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHHhCC-C--------chHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788999984 7899986 9999999888766666665532 2 236677778888888888999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVV 147 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~ 147 (199)
+|+|+||++|+||+|+++|+|++++++.......+++.......|..+++.....++..+......
T Consensus 178 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~ 243 (279)
T PRK12884 178 EDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVADLIFLYSA 243 (279)
T ss_pred hhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888766665566555544344445555555444
No 21
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.72 E-value=7.4e-17 Score=135.21 Aligned_cols=95 Identities=26% Similarity=0.453 Sum_probs=83.5
Q ss_pred hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
.+++.+.++.|| +|+++|++++ +|+.+++++|.....+.+. +++. .+.+.++.+.+.+++..++...||+
T Consensus 98 ~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (257)
T PF01040_consen 98 LLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGGD-------PPPPPFLLAIFFFLLIFAIMFFNDI 168 (257)
T ss_pred HHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCCc-------ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677789999 8999999999 9999999998777766655 4554 4578889999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHH
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSV 106 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~ 106 (199)
||+|+|+++|+||+|+++|+++++.
T Consensus 169 ~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 169 RDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred hhHHHHHHcCCcchHHHHHHHHHHH
Confidence 9999999999999999999999998
No 22
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.70 E-value=7.3e-16 Score=133.19 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=119.6
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+.+++.++++.||.. -++++++|+..+++++. .++++|++++++ ++++.++.+++..+++.+....|++
T Consensus 119 ~~~~~~~~~~~Y~~~---Kr~~~~~~~~~g~~~~~-~~l~~~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~a~ 187 (285)
T PRK12847 119 LSFIAVILIVLYPLM---KRFFYWPQLFLGFTFNM-GILMAFAAVQNQ-------LDIEAILLYIGCIFWTIGYDTIYAY 187 (285)
T ss_pred HHHHHHHHHHhcccc---ccCCcccHHHHHHHHHH-HHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788999852 23567899999988884 677788888887 5688889999999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
+|+|+|+++|++|+|+++|++++.+++.......+++.......|..+++. +...+. ......+...-+.+|++
T Consensus 188 ~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~--~~~l~~~~~~~~~~~~~--- 261 (285)
T PRK12847 188 QDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFY-LAILAA--AGIFYYQYKLLDFDNPA--- 261 (285)
T ss_pred ccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHH--HHHHHHHHHHhCCCCHH---
Confidence 999999999999999999999999999998888888887777777766644 222222 22222222211112222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAGLIT 184 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll 184 (199)
..+ +.-+.+...+.++.+++++
T Consensus 262 ~~~-~~f~~~~~~~~l~~~~~~~ 283 (285)
T PRK12847 262 NCM-YAFKANHYVGLLLFLGAVL 283 (285)
T ss_pred HHH-HHHHHhHHHHHHHHHHHHh
Confidence 122 2455666666666666654
No 23
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.67 E-value=3.4e-15 Score=128.82 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=115.1
Q ss_pred hHHHHHHhhccCCCCcccccc-cchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~-glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
...+.++.+.|+ .+||+ +++++..++++|. ++.+++.+++++.+ .....++.+++..+++.+..+.||+
T Consensus 111 ~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~-~~~~g~~a~~g~~~-----~~~~~~ll~~~~~~w~~~~~~i~~~ 180 (282)
T TIGR01475 111 SPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGL-APLAGWVAVIGTIS-----FFLVAWLLGIGVGFWIAGFDLIYAI 180 (282)
T ss_pred HHHHHHHHHHHh----hHhccccccHHHHHHHHHH-HHHHHHHHHhCCcc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788897 36765 5799999988885 55666777777731 1266778899999999999999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
+|+|+|+++|+||+|+++|+|++++.+.......+.+.......+...+..+....+.........+..+. +|++
T Consensus 181 ~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~l~~~~~~~~~--~~~~--- 255 (282)
T TIGR01475 181 QDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYIVDP--GDQS--- 255 (282)
T ss_pred hhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHcCC--CCHH---
Confidence 99999999999999999999999999988887777776655544433332222222223333333332221 1222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
..++.--..+...++++.+|++++.+
T Consensus 256 ~~~~~ff~~~~~l~~~~~~g~~~~~~ 281 (282)
T TIGR01475 256 KIQRAFFYANGFLSITFLIGVIIDVL 281 (282)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 12222345556677778888877654
No 24
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.66 E-value=5.7e-15 Score=127.42 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=90.2
Q ss_pred HHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHh
Q 029099 7 VICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEG 86 (199)
Q Consensus 7 ~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~ 86 (199)
+..++.||. ++||+++++..++...|.++++++|++++++ +++..++.+++..+++.+..++++++|+|+
T Consensus 117 ~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~ll~~~~~~w~~~~~~~l~~~d~ed 186 (279)
T PRK12869 117 FFYAVVYTI---WLKPRTWLNIVIGGFAGNAAALAGYASGTGS-------LDLEAVLLSFLIYLWTPGHIWSLALKYRED 186 (279)
T ss_pred HHHHhhhCc---ccccCChHHHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 456788993 7999999999999999999999999999988 568889999999999999999999999999
Q ss_pred hHhcCCcccccccChhhHHHHHHHHHHHHHHH
Q 029099 87 DRNVGKMSPLVRLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 87 D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~ 118 (199)
|+++|+||+|++.|++++++....+.......
T Consensus 187 d~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~ 218 (279)
T PRK12869 187 YRRAGVPMLPAVVGEKTSVRAISISNALMIPY 218 (279)
T ss_pred HHHcCCeecceeecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876665544333
No 25
>PLN02878 homogentisate phytyltransferase
Probab=99.66 E-value=4.5e-15 Score=127.64 Aligned_cols=120 Identities=20% Similarity=0.258 Sum_probs=90.0
Q ss_pred HHHHHHhhccCC--CCcccccccchHHHHHHhHhHHHHHHHHHHh--cCccccccccchHHHHHHHHHHHHHHHHHHHhc
Q 029099 4 TCAVICGYIYQC--PPFRLSYQGLGEPLCFAAFGPFATTAFYLLL--GSTRENLCLSITATVLSASLLVGLTTSLILFCS 79 (199)
Q Consensus 4 ~~~~~~~~~YS~--~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~--~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~n 79 (199)
..++++++.||. ||+|+|++++-...++++-+.+.+-.++|.+ +..++ .+..++.+.+...+...++..++...|
T Consensus 98 ~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g-~~~~~~~~~~~~~~f~~~f~~~i~i~K 176 (280)
T PLN02878 98 FVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLG-RPAVFTRPLIFATAFMCFFSVVIALFK 176 (280)
T ss_pred HHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhC-CccccchhHHHHHHHHHHHHHHHHHHh
Confidence 456688999997 9999999998666666554444443333332 21111 111244455566667888899999999
Q ss_pred CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHH
Q 029099 80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 124 (199)
Q Consensus 80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~ 124 (199)
|+||+|+||+.|+||+|+++|++++.++...+...+|...+....
T Consensus 177 Di~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~ 221 (280)
T PLN02878 177 DIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGA 221 (280)
T ss_pred hCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996555433
No 26
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.66 E-value=6.7e-15 Score=127.44 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=113.7
Q ss_pred HHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099 4 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 83 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D 83 (199)
.++++..+.|+ +.-+++.++++..+++++. .++++|++++++ ++++.++.+++.++++....+.|+++|
T Consensus 115 ~~~~~~~~~Y~---~~Kr~t~~~~~~lg~~~~~-~~l~g~~a~~g~-------~~~~~~ll~~~~~~w~~~~~~i~a~~D 183 (284)
T PRK12888 115 PLAVAPLVVYP---YAKRFTNFPHAILGLAQAV-GPVGAWIAVTGT-------WSWPAVLLGLAVGLWIGGFDLIYACQD 183 (284)
T ss_pred HHHHHHHHHHH---HhhcccchhhHHHHHHHHH-HHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666784 3345567899999888765 556778898887 568888999999999999999999999
Q ss_pred hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcch
Q 029099 84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMA 163 (199)
Q Consensus 84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~~ 163 (199)
+|+||++|+||+|+++|+|++.+++..+....+++.......+...+..+....++.... .+++..-+.+|+++. ..
T Consensus 184 ~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~~~~~~~~~l--~~~~~~~~~~~~~~~-~~ 260 (284)
T PRK12888 184 AEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAF--AYEHAIVSPTDLSRV-NR 260 (284)
T ss_pred HHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH--HHHHHHcCccCHHHH-HH
Confidence 999999999999999999999988877777777665555444433332211222222222 223222222233333 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 164 KYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 164 ~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
.--+.+...|+++.+|++++.+
T Consensus 261 --~ff~~n~~ig~~~~~~~~~~~~ 282 (284)
T PRK12888 261 --AFFTANGFVGIALFGFALLDLL 282 (284)
T ss_pred --HHHHHhhHHHHHHHHHHHHHHH
Confidence 1134556677888888887764
No 27
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.61 E-value=5.5e-14 Score=120.91 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=88.8
Q ss_pred hHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
.+.+...++.||. ++|+++ +||+.++..+|..++.|.+.+ ++ +++..+... ...++..+..+.||+
T Consensus 110 ~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g~~a~--~~-------~~~~~~~~~-~~fl~~~~~~~~~~~ 176 (277)
T PRK12883 110 ALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYGAIAV--GR-------IGLAGYLAI-CAFLVNVAREIMKDI 176 (277)
T ss_pred HHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHHHHHh--cc-------ccHHHHHHH-HHHHHHHHHHHHhhh
Confidence 4566778999996 556666 699999999998887666543 44 334444333 345666788899999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE 152 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~ 152 (199)
||+|+||++|+||+|+++|++++++..........+........+. ++......++..+......+..++
T Consensus 177 ~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~~~-~~~y~~~~~~~~~~l~~~~~~~~~ 246 (277)
T PRK12883 177 EDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKAGI-GLGYLPIIIVDAIILYAAYLVLRN 246 (277)
T ss_pred hhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876654332222222222232 221111223445555555555543
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.58 E-value=1.1e-13 Score=119.16 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=95.3
Q ss_pred hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
.+++++..+.||. ++|+++. ||+.++..+|..++.|.++.++ . ...+.......+++.+....||+
T Consensus 110 ~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~-~---------~~~~~l~~~~f~~~~~~~~~~~~ 176 (279)
T PRK09573 110 ALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFN-V---------LRIIILFLCAFFSTWSREIVKDI 176 (279)
T ss_pred HHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHcc-c---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778899984 6788875 9999999999998888777754 2 22334455556777788889999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHHh
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF-LCAMTSPIGKLVVSYVEE 152 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~l-l~ll~lP~a~~~~~~~~~ 152 (199)
+|+|+|+++|+||+|+++|+|++.++.........++.......|...+..+. ...+..+......+..++
T Consensus 177 ~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~ 248 (279)
T PRK09573 177 EDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILLKN 248 (279)
T ss_pred hhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 99999999999999999999999999877766655554444333432332211 112234444444555543
No 29
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.58 E-value=1.9e-13 Score=118.74 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=91.8
Q ss_pred HHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099 4 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 83 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D 83 (199)
++++...+.||. .-+++++|++..+++++ .+++++|++++++ +++..++.+++..+|+...-+.++++|
T Consensus 118 ~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~-~~~l~g~~a~~g~-------~~~~~~ll~~~~~lw~~~~~~~~a~~D 186 (291)
T PRK12886 118 PPALFFLLLYSY---CKRFTALAHVVLGFCLA-LAPLGAWIAIRGT-------IELPAILLGLAVLFWVAGFDILYALQD 186 (291)
T ss_pred HHHHHHHHHHhh---hhccccccHHHHHHHHH-HHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345666778883 23445789999888866 4567889999887 567888899999999998878889999
Q ss_pred hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099 84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 130 (199)
Q Consensus 84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~ 130 (199)
+|+|+++|+||+|+++|++++++.........+.+.......+..++
T Consensus 187 ~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (291)
T PRK12886 187 LEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP 233 (291)
T ss_pred HHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999999987777777776666555444343
No 30
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.57 E-value=2e-13 Score=117.68 Aligned_cols=117 Identities=9% Similarity=-0.000 Sum_probs=90.9
Q ss_pred HHHHHH-hhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 4 TCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 4 ~~~~~~-~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
+++++. ++.||. ++||+++++..++...|.++++++|++++++ +++..++.+++..+++..-.....++
T Consensus 112 ~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~ 181 (280)
T TIGR01473 112 LFGIFFYVIVYTI---WLKRRTPQNTVIGGFAGAVPPLIGWAAVTGS-------ISLGAWLLFAIIFLWQPPHFWALALK 181 (280)
T ss_pred HHHHHHHHhhcCh---hhccCCchhHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 789995 6899999999998899999999999999988 56778888888888888866666789
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 130 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~ 130 (199)
|+|+||++|+||+|+++|+|++.+...................+..++
T Consensus 182 ~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (280)
T TIGR01473 182 YKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW 229 (280)
T ss_pred hhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 999999999999999999999987665554444444333333444444
No 31
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.57 E-value=1.8e-13 Score=120.06 Aligned_cols=167 Identities=13% Similarity=0.008 Sum_probs=112.0
Q ss_pred hhHHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099 2 LLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH 80 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn 80 (199)
+.+++++..+.||. .|| ++++....++.++..+.. +|++++++ +++..+...+...++....-.++|
T Consensus 146 l~~~~~~~~~~Y~~----~KR~t~~~~~~~Gl~~~~~~l~-g~~a~~g~-------~~~~~~~l~~~~~~w~~~~~~~~a 213 (314)
T PRK12878 146 LGIASLAIVAAYPF----MKRITWWPQFFLGLAFSWGALM-GWAAHFGS-------LSLAAVLLYAGSIAWTIGYDTIYA 213 (314)
T ss_pred HHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHH-HHHHHhCC-------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788999973 454 355665556665544444 48999988 557777777788888888888899
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKI 160 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~ 160 (199)
++|+|+|+++|+||+|+++|++++++++........++.+.....+. +++. +++.+..+.. ...+..+.+.++++
T Consensus 214 ~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~-- 288 (314)
T PRK12878 214 HQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGV-PLLA-LLGLLAAAAH-LAWQIARLDIDDPD-- 288 (314)
T ss_pred hhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhcC-cHHH-HHHHHHHHHH-HHHHHHHcccCChH--
Confidence 99999999999999999999999999986666666555444445553 6644 4555555543 22232221112222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 161 FMAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 161 ~~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
.. ++..+.+..++.++.++++++.+
T Consensus 289 -~~-~~~F~~n~~~~~ll~~~l~~~~~ 313 (314)
T PRK12878 289 -QC-LRLFKSNRDAGLLIFLGLVVGGL 313 (314)
T ss_pred -HH-HHHHHHhHHHHHHHHHHHHHHhh
Confidence 11 24667777788888888777653
No 32
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.57 E-value=1e-13 Score=119.73 Aligned_cols=117 Identities=18% Similarity=0.054 Sum_probs=89.6
Q ss_pred hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
.+++++..+.|+ +.-++.+++++..++++|+. +..+|++++++ +++..++++++..+++....+.|+++
T Consensus 117 ~~~~~~~~~~Y~---~~Kr~~~~~~~~~g~~~g~~-~~~g~~a~~~~-------~~~~~~~l~~~~~~w~~~~~~~~a~~ 185 (282)
T PRK12848 117 SVAALALAWIYP---FMKRYTHLPQVVLGAAFGWG-IPMAFAAVQGS-------VPLEAWLLFLANILWTVAYDTQYAMV 185 (282)
T ss_pred HHHHHHHHHHHH---hHHhcCcccHHHHHHHHHHH-HHHHHHHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677788994 45667789999988888864 45678888887 56788889999999999999999999
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 130 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~ 130 (199)
|+|+|+++|++|+|+++|++++.+...........+.......+..++
T Consensus 186 D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (282)
T PRK12848 186 DRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWA 233 (282)
T ss_pred cHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999999999887764444333333333333444333
No 33
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.57 E-value=1.7e-13 Score=118.34 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=107.5
Q ss_pred hhHHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099 2 LLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH 80 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn 80 (199)
+.++++++++.||. .|+ .+++++..++.++..++.| |++++++ +++..++..+...+++.....+||
T Consensus 114 l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~~~~~g-~~a~~g~-------~~~~~~ll~~~~~lw~~~~~~~~a 181 (281)
T TIGR01474 114 LGVASLALVATYPF----MKRITYWPQLVLGLAFGWGALMG-WAAVTGD-------LSTAAWVLYLANILWTLGYDTIYA 181 (281)
T ss_pred HHHHHHHHHHHhch----hcccccccHHHHHHHHHHHHHHH-HHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999973 444 5679999888888655554 7777877 457777778888999999999999
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKI 160 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~ 160 (199)
++|+|+|+++|+||+|+++|+++++..........+++.......+..++.. +...+..-........+++ +|+++
T Consensus 182 ~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~--~~~~~- 257 (281)
T TIGR01474 182 MQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYY-LGLAAAALLLIRQIATLDI--RDPEN- 257 (281)
T ss_pred HhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHhCC--CCHHH-
Confidence 9999999999999999999999976665555554554444443444333322 2222222222222233221 22222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 029099 161 FMAKYYCVRFHALFGAALVAGLITA 185 (199)
Q Consensus 161 ~~~~~~t~~~~~l~~~ll~~glll~ 185 (199)
.+ +.-+.+...+.++.++++++
T Consensus 258 --~~-~~F~~~~~~~~~l~~~~~~~ 279 (281)
T TIGR01474 258 --CL-KLFKANNYVGLLLFAGIALG 279 (281)
T ss_pred --HH-HHHHHhhHHHHHHHHHHHHH
Confidence 22 35566666777777676654
No 34
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.56 E-value=2.4e-13 Score=118.49 Aligned_cols=165 Identities=15% Similarity=0.001 Sum_probs=105.3
Q ss_pred hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
.+.+.++++.|+.+|.. .+.+.+++.-++.++..++.| +++++. +++..++.+++..+++.+...+||++
T Consensus 129 ~~~~~~~~~~Y~~~kr~-~~~p~~~l~G~~~~~~~~~~g--~~~~g~-------~~~~~~ll~~~~~~w~~~~~~~~a~~ 198 (297)
T PRK12871 129 MLYSYGIEAFYQVKKRN-QKYPVAQLLGRTDFTLFPAAG--YLCYGQ-------PDMTALLYMVFFYPWTMAHLGLNDFI 198 (297)
T ss_pred HHHHHHHHHHHhccccc-ccccHHHHHHHHHHHHHHHHH--HHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788999988754 556777754445555533333 356666 56778888999999999999999999
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM 162 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~ 162 (199)
|+|+|+++|+||+|+++|++++++....+..+..+..+.... +..+.....+.+...|......+..+++ |+++- .
T Consensus 199 D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~ 274 (297)
T PRK12871 199 DLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFFLR-ELGPIALYGFLAGFVLLAGANLYLWKEK--SQDAG-M 274 (297)
T ss_pred hhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHH-H
Confidence 999999999999999999999998777666666544443322 3322211112234445555555555443 22211 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029099 163 AKYYCVRFHALFGAALVAGLIT 184 (199)
Q Consensus 163 ~~~~t~~~~~l~~~ll~~glll 184 (199)
. .-+..-.+...+...+.+
T Consensus 275 ~---~f~~~~~~~~~~~~~~~~ 293 (297)
T PRK12871 275 K---ILPLYHASLVIYAVSIIL 293 (297)
T ss_pred H---HHHHHHHHHHHHHHHHHh
Confidence 2 334444455555554443
No 35
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.55 E-value=2.3e-13 Score=118.01 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=101.1
Q ss_pred hhHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
+.+++.+++++||.||+|+|+||+.|-.+...+|.-. +...+..+.. ..+..+ +...++..+.-...++
T Consensus 123 l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~--~~~~~~~g~~------~~~~~l---~a~~~w~~g~dii~ai 191 (292)
T PRK13595 123 LLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPL--ALPALALGAP------VPWPPL---LALMAWSVGKHAFDAA 191 (292)
T ss_pred HHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHH--HHHHHHcCCc------chHHHH---HHHHHHHHHHHHHHhc
Confidence 3456778999999999999999998877766666522 2223444441 223322 3335666777889999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
+|+|+||+.|.||+|+++|++++.++...+..++-++..... .|.+ +. +.+|.+....+..+|. ++++-.
T Consensus 192 ~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~----~~~~---~~-~~~~~~~~~~~~~~~~--~~~~~~ 261 (292)
T PRK13595 192 QDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS----RLTA---LA-LWLICGGMALALWRRP--TPETAH 261 (292)
T ss_pred cChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc----chHH---HH-HHHHHHHHHHHHhcCC--CHHHHh
Confidence 999999999999999999999999998877766555433322 2331 22 5666666666644332 233332
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVA 180 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~ 180 (199)
-.-++..-++.+.|.+.++
T Consensus 262 ~~~~~~~~~~~~~g~~~~~ 280 (292)
T PRK13595 262 RLYPLSIVTPWIVGTVAGV 280 (292)
T ss_pred ccchHHHHHhHHHHHHHHH
Confidence 2222344455555544443
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.54 E-value=2.2e-13 Score=118.24 Aligned_cols=169 Identities=12% Similarity=-0.015 Sum_probs=112.6
Q ss_pred hHHHHHHhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
.+.+.+..+.||. .-++++++++..++++|. .+.++|++++++ +++..++.+++..+++...-.+++++
T Consensus 121 ~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~-~~l~g~~a~~g~-------~~~~~~~l~~~~~lw~~~~d~~~a~~ 189 (290)
T PRK12870 121 CVAAVPVIFLYPL---AKRVFPVPQLVLAIAWGF-AVLISWSAVTGH-------LDLGTWLLWAATVFWTLGFDTVYAMS 189 (290)
T ss_pred HHHHHHHHHHhhh---hhhccccceeeehHHHHh-HHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677888973 455667889988888885 678888888888 55778888999999999999999999
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM 162 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~ 162 (199)
|+|+|+++|.+|+|+++|++++.++..........+.......|..++.. ....+..-......+.++++ +.++. .
T Consensus 190 D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~-~~~~~~~~~l~~~~~~~~~~--~~~~~-~ 265 (290)
T PRK12870 190 DREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFW-IGLAIAAVLWARQYRRLRQA--NLPPL-A 265 (290)
T ss_pred hHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHhccc--CCChH-H
Confidence 99999999999999999999998776643333333333333445444422 22222222222222333222 12221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 163 AKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 163 ~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
. +..-+.+...+.++.+|++++.+
T Consensus 266 ~-~~~F~~n~~~g~~~~~~~~~~~~ 289 (290)
T PRK12870 266 Y-GQLFLQNVWIGFLLLAGMILGSL 289 (290)
T ss_pred H-HHHHHHhhHHHHHHHHHHHHHhh
Confidence 1 13567777788888888777654
No 37
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.53 E-value=7.9e-13 Score=114.92 Aligned_cols=166 Identities=12% Similarity=0.025 Sum_probs=105.6
Q ss_pred HHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 4 TCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
+.++.....||. .|+ .++|++..++++|..++.| +.+.+|+ +++..++.+++..+|+......|+++
T Consensus 123 ~~~~~~~~~Y~~----~KR~t~~~~~~~g~~~~~~~l~G-~~av~g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~ 190 (291)
T PRK12874 123 FPFLIVLGGYSY----FKRFSSLAHLVLGLSLGLAPIAG-VVAVLGE-------IPLWSVFLALGVMFWVAGFDLLYSLQ 190 (291)
T ss_pred HHHHHHHHHHhh----hcccccccHHHHHHHHHHHHHHH-HHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556778883 455 4679999999988665555 4444666 45667788899999999999999999
Q ss_pred ChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcc
Q 029099 83 QVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM 162 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~ 162 (199)
|+|+||++|++|+|+++|++++.+..........++...........++.+....+..-......+..++ +++ +.
T Consensus 191 D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~-~~-- 265 (291)
T PRK12874 191 DMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYLVRK--DFK-KI-- 265 (291)
T ss_pred cHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcC--CCh-HH--
Confidence 9999999999999999999999987766555444444433222222222211111222222233333321 111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 163 AKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 163 ~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
++..-..+...++++.++.+++.+
T Consensus 266 -~~~ff~sn~~l~~l~~~~~~~~~~ 289 (291)
T PRK12874 266 -DKAFFTLNGYLGIVFFIFIVLDVL 289 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222345556677777777777765
No 38
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.52 E-value=6.2e-13 Score=114.34 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=83.2
Q ss_pred hHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
..++.+.++.||. ++|+++ +||+.++...|.....|..+... . .....+..+++..+++.+....||+
T Consensus 111 ~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~-~-------~~~~~~~l~~~~fl~~~~~~~~~~~ 179 (276)
T PRK12882 111 ALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVGT-E-------GLLALLVLFALAALATLAREIIKDV 179 (276)
T ss_pred HHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhcc-c-------chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777899984 899987 59999988888776666544422 1 1244556677777888888999999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHH
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 121 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~ 121 (199)
+|+|+||++|+||+|+++|+|++.++.........+....
T Consensus 180 ~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~ 219 (276)
T PRK12882 180 EDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219 (276)
T ss_pred hhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877776655544443
No 39
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.50 E-value=1.3e-12 Score=113.72 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=89.1
Q ss_pred HhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhH
Q 029099 9 CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDR 88 (199)
Q Consensus 9 ~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~ 88 (199)
..+.||. ++||++.|+..++...|..+++++|++++++ +++..++.+++..++...-.++++++|+|+|+
T Consensus 127 ~~~~Ys~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~-------~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~ 196 (296)
T PRK04375 127 YVVVYTL---WLKRRTPQNIVIGGAAGAMPPLIGWAAVTGS-------LSWEALILFLIIFLWTPPHFWALAIFRKDDYA 196 (296)
T ss_pred HHHHhcc---chhcCCccchHHHHHHHHhHHHHHHHHhCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4568883 7999999999988778888888899999887 56888889999999999989999999999999
Q ss_pred hcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchH
Q 029099 89 NVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 130 (199)
Q Consensus 89 ~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~ 130 (199)
++|.||+|+++|++++++.........-...+.....|..++
T Consensus 197 ~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (296)
T PRK04375 197 AAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL 238 (296)
T ss_pred HcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 999999999999999887665444433333333344443344
No 40
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.29 E-value=1.8e-10 Score=100.59 Aligned_cols=171 Identities=14% Similarity=0.051 Sum_probs=99.4
Q ss_pred HHHHHHhhccCCCCccccc-ccchHHHHHHhHhHHHHHHHHHHhcCccccc-cccchHHHHHHHHHHHHHHHHHHHhcCC
Q 029099 4 TCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLGSTRENL-CLSITATVLSASLLVGLTTSLILFCSHF 81 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y-~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~-~~~~~~~~l~~slp~~l~~~~il~~nn~ 81 (199)
..+++..+.|+ ..|+ +.++++..++++|..+..| +.+.++..... ...++..++...+...+++...-..|++
T Consensus 125 ~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~~~~~G-~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~ 199 (300)
T PRK13106 125 PIVALIAMSYP----YMKRYTAFANYHLASIQGLAVFSG-AVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHI 199 (300)
T ss_pred HHHHHHHHHHh----HHhcCCcchHHHHHHHHHHHHHHH-HHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445566786 2455 5679999999999765554 45555542100 0001223333444455566666677999
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIF 161 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~ 161 (199)
+|+|+|+++|+||+|+++| |++.++...+...+-++.........+.+..+....+.. ..-..+...-+ .+ ++.
T Consensus 200 ~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~~~~~~--~~l~~~~~~~~-~~-~~~- 273 (300)
T PRK13106 200 PDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHG--LIMAYAYYLAS-KK-GDF- 273 (300)
T ss_pred cchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHHHhC-Cc-hHH-
Confidence 9999999999999999999 888888877777666665555433333332211111111 11122222111 12 222
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 162 MAKYYCVRFHALFGAALVAGLITARIL 188 (199)
Q Consensus 162 ~~~~~t~~~~~l~~~ll~~glll~~~~ 188 (199)
.. .-+.+...|+++.+|++++.++
T Consensus 274 ~~---~F~~n~~ig~~~~~~~~~~~~~ 297 (300)
T PRK13106 274 GR---AFYYNIYSSIVLGLGIIIDVLL 297 (300)
T ss_pred HH---HHHHccHHHHHHHHHHHHHHHH
Confidence 22 3366777888888888877763
No 41
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.14 E-value=3.7e-09 Score=91.53 Aligned_cols=116 Identities=22% Similarity=0.139 Sum_probs=89.5
Q ss_pred hhHHHHHHhhccCCCCccccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcC
Q 029099 2 LLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSH 80 (199)
Q Consensus 2 ~~~~~~~~~~~YS~~P~~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn 80 (199)
+..++.++.+.| | .+|+.+ ++....+..+|.....|.. +..++ .+...+++.+...+++.+.-..++
T Consensus 121 l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~~g~~-a~~~~-------~~~~~~~l~~~~~l~~~~~~~i~~ 188 (289)
T COG0382 121 LSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGALAGAA-AVGGS-------LPLLAWLLLLAAILWTLGYDIIYA 188 (289)
T ss_pred HHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHHHHHH-HHhCc-------cchHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888999 4 777765 5899999999876666554 44443 346777888889999999999999
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccch
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP 129 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p 129 (199)
++|+|+||+.|.+|+|+.+|++++..+........-+........+..+
T Consensus 189 ~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (289)
T COG0382 189 IQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLG 237 (289)
T ss_pred ccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999999999999999999999998887744444444444444443
No 42
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.11 E-value=5.5e-09 Score=90.85 Aligned_cols=164 Identities=11% Similarity=0.001 Sum_probs=94.0
Q ss_pred hHHHHHHhhccCCCCcccccc-cchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHH-HHHHHHHHHHHHHHhcC
Q 029099 3 LTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLS-ASLLVGLTTSLILFCSH 80 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~-glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~-~slp~~l~~~~il~~nn 80 (199)
..++++..+.|| ..||+ .++++..+++++. ....+|.+++++. ++.... ......+|+..--....
T Consensus 120 ~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~~-~~l~g~~av~g~~-------~~~~~~~l~~~~~~W~~~~d~~ya 187 (289)
T PLN02809 120 GASSLLLVFTYP----LMKRFTFWPQAFLGLTFNW-GALLGWAAVKGSL-------DPAVVLPLYASGVCWTLVYDTIYA 187 (289)
T ss_pred HHHHHHHHHHHh----HHHhcCcchHHHHHHHHHH-HHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788997 26665 5799988888774 4455667777763 333332 33444455533334445
Q ss_pred CCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhh-ccccc
Q 029099 81 FHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRALPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKG 158 (199)
Q Consensus 81 ~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~-~g~~p~~~~ll~ll~lP~a~~~~~~~~~~-~~~~~ 158 (199)
++|+|+||++|.+|+|+++|++...++. .+....+.+...... .+..++.. +. .... +.....+.+.- .+|++
T Consensus 188 ~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~~~~--~~-~~~~-~~~l~~~~~~v~~~~~~ 262 (289)
T PLN02809 188 HQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGWPYY--AG-LAAA-AGHLAWQIQTVDLSSRA 262 (289)
T ss_pred HhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHH--HH-HHHH-HHHHHHHHHHcCCCCHH
Confidence 5799999999999999999999666555 455556666544433 33322211 21 1111 11222222221 12333
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 159 KIFMAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 159 ~~~~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
+. . +.-+.+...|.++.+|++++..
T Consensus 263 ~~---~-~~F~~n~~~g~~~~~~~~~~~~ 287 (289)
T PLN02809 263 DC---N-RKFVSNKWFGAIVFAGIVLGKL 287 (289)
T ss_pred HH---H-HHHHhCCHHHHHHHHHHHHHHh
Confidence 22 2 1345555677777777777654
No 43
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.11 E-value=3.6e-09 Score=91.93 Aligned_cols=161 Identities=10% Similarity=0.028 Sum_probs=102.3
Q ss_pred cccccc-chHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCccccc
Q 029099 19 RLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLV 97 (199)
Q Consensus 19 ~l~y~g-lGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav 97 (199)
..||+. ++.+..++.+| ..+++++.+.+++.+ ..+..++..+...+|+..-=....+.|+|+|++.|.||+|+
T Consensus 124 ~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~g~~~-----~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~ 197 (286)
T PRK12895 124 FLKRYTAWRHIYMGSIIG-LGVLAGYLAVIPAFP-----YNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMN 197 (286)
T ss_pred HHHhCccccHHHHHHHHH-hHHHHHHHHHcCCCC-----chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHH
Confidence 577775 68888899999 577777778777632 22334566777888888888999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccccchhcchHHHHHHHHHHHHHH
Q 029099 98 RLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAA 177 (199)
Q Consensus 98 ~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~l 177 (199)
++|++++.++...+...+..+..........++ . .+.. .+....-.+++..-+++|+++. ....-+.+...|.+
T Consensus 198 ~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-y-~~~~-~~~~~~l~~q~~~~~~~~~~~~---~~~~F~~N~~ig~~ 271 (286)
T PRK12895 198 TYGIKNGLYISDIFHISSLILFWISGIYIRTLW-Y-LAAL-IIIYTLVIYQHLIIDPRNPINK---RMSFFNANSFIGFV 271 (286)
T ss_pred HHCCccHHHHHHHHHHHHHHHHHHHHHHHhhHH-H-HHHH-HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHcCHHHHH
Confidence 999999987765555554444433333222222 1 1221 1222222223222222233322 11235566677888
Q ss_pred HHHHHHHHHHHhhc
Q 029099 178 LVAGLITARILVTK 191 (199)
Q Consensus 178 l~~glll~~~~~~~ 191 (199)
+.+|.+++.+++-+
T Consensus 272 ~~~~~~~~~~~~~~ 285 (286)
T PRK12895 272 FLIGIILSLRFPIR 285 (286)
T ss_pred HHHHHHHHhccccc
Confidence 88888888887643
No 44
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.10 E-value=1e-08 Score=89.92 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=77.6
Q ss_pred HhhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhH
Q 029099 9 CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDR 88 (199)
Q Consensus 9 ~~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~ 88 (199)
..+.|| .++||++..+..++-..|.+++++++++++++ +++..+.+.....+|+..-.++-.+.|+|+|+
T Consensus 130 ~~~~Yt---~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~-------~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~ 199 (306)
T PRK13362 130 YVGVYS---LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQ-------FDAGALILLLMFSLWQMPHSYAIAIFRFNDYA 199 (306)
T ss_pred HHHHHh---HHHhccCcHhHHHHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 367898 38999999777776666788899999999988 56778888888889998888888899999999
Q ss_pred hcCCcccccccChhhHHHHHHH
Q 029099 89 NVGKMSPLVRLGTERGSVVVKW 110 (199)
Q Consensus 89 ~~Gk~Tlav~lG~~~a~~l~~~ 110 (199)
++|.+|+|++.|++++++....
T Consensus 200 ~aG~~~lpv~~G~~~t~~~~~~ 221 (306)
T PRK13362 200 AAGIPVLPVARGIAKTKLHIVL 221 (306)
T ss_pred HCCCeeeceecChHHHHHHHHH
Confidence 9999999999999988875433
No 45
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.08 E-value=1.1e-08 Score=89.39 Aligned_cols=169 Identities=10% Similarity=0.020 Sum_probs=97.5
Q ss_pred hHHHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchH----HHHHHHHHHHHHHHHHHH
Q 029099 3 LTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITA----TVLSASLLVGLTTSLILF 77 (199)
Q Consensus 3 ~~~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~----~~l~~slp~~l~~~~il~ 77 (199)
..++++..+.|| ..||+.. +.+..++.++. .+.+++.+.+++. .++ ..++.+++..+++..-=.
T Consensus 122 ~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~~-~~l~~~~Av~~~~------~~~~l~~~~~lw~~~~~~~~~g~Di 190 (300)
T PRK12876 122 AVLSTLLMIIYP----YTKRVTFLCHWILGLVYYL-AILMNFFAIIETP------LSFSLFCMASLWGISFGMIIAANDI 190 (300)
T ss_pred HHHHHHHHHHHH----hHhcCCchhHHHHHHHHHH-HHHHHHHHHhcCc------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778896 4899876 88877777775 5555555655441 233 334445555566655555
Q ss_pred hcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029099 78 CSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-SRALPLSCIFLCAMTSPIGKLVVSYVEENHKD 156 (199)
Q Consensus 78 ~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~-~g~~p~~~~ll~ll~lP~a~~~~~~~~~~~~~ 156 (199)
...+.|+|+||+.|.||+|+++|++++.+....+.....++...... .+..++.. +..++..-......++.+.-++|
T Consensus 191 iYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y-~~~~~~~~~~l~~~~~~~~~~~~ 269 (300)
T PRK12876 191 IYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFY-LCSLVPLTVILKTIKHYSLIDKK 269 (300)
T ss_pred HHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 66799999999999999999999999877766555554444433332 33332312 23333223333334442221122
Q ss_pred cchhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 157 KGKIFMAKYYCVRFHALFGAALVAGLITAR 186 (199)
Q Consensus 157 ~~~~~~~~~~t~~~~~l~~~ll~~glll~~ 186 (199)
..+. .. ..-+.+...++.+.+|++...
T Consensus 270 ~~~~-~~--~~F~~N~~ig~~~~~~~~~~~ 296 (300)
T PRK12876 270 KSTL-EQ--KFFLGNIYLALSFFVNMIGLF 296 (300)
T ss_pred chHH-HH--HHHHhcCHHHHHHHHHHHHHH
Confidence 2222 11 244555566666666665544
No 46
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.66 E-value=1.3e-06 Score=76.32 Aligned_cols=107 Identities=16% Similarity=0.050 Sum_probs=67.9
Q ss_pred HHHHHhhccCCCCcccccc-cchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099 5 CAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 83 (199)
Q Consensus 5 ~~~~~~~~YS~~P~~l~y~-glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D 83 (199)
++++....||. .||+ .+..+..+++++ .+++++|.+.+++.+ .....+.+.....+|+..-=..-.+.|
T Consensus 125 ~~~~~~~~Y~~----~KR~t~~~~~vlg~~~a-~~~l~gw~Av~g~~~-----~~~~~l~l~~~~~~W~~~~d~iyA~qD 194 (294)
T PRK12873 125 LALPPILIYPS----AKRWFAYPQAILALCWG-FAVLIPWAAAEGSLN-----GGWPLLFCWLATLLWTFGFDTVYAMAD 194 (294)
T ss_pred HHHHHHHHHHH----HHhccccchHHHHHHHH-hHHHHHHHHHhCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555677872 4543 345666666655 566677777777732 112333444566777766655667789
Q ss_pred hHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHH
Q 029099 84 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI 122 (199)
Q Consensus 84 ie~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~ 122 (199)
+|+|+++|.+++|++.|+ ++.+....+.....++....
T Consensus 195 ~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~ 232 (294)
T PRK12873 195 RRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALA 232 (294)
T ss_pred HhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 45555445554444444333
No 47
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.37 E-value=9.8e-06 Score=70.72 Aligned_cols=106 Identities=6% Similarity=0.003 Sum_probs=69.2
Q ss_pred HHHHHhhcc-----CCCCcccccccc-hHHHHHHhHhHHHHHH------HHHHhcCccccccccchHHHHHHHHHHHHHH
Q 029099 5 CAVICGYIY-----QCPPFRLSYQGL-GEPLCFAAFGPFATTA------FYLLLGSTRENLCLSITATVLSASLLVGLTT 72 (199)
Q Consensus 5 ~~~~~~~~Y-----S~~P~~l~y~gl-Ge~~~~~~~G~l~~~g------~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~ 72 (199)
...++.+.| +. ++|..++ |.+.+...-|.....+ .+........ ......+..++-..+..
T Consensus 116 ~~~~i~~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~----~~~~~~~~l~l~afl~~ 188 (299)
T PRK13592 116 GWFLFLYIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP----LLSLPTVLLAFTMYFPS 188 (299)
T ss_pred HHHHHHHHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHH
Confidence 344567788 65 8888887 8888877666444322 2211111100 01111234455555666
Q ss_pred HHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHH
Q 029099 73 SLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL 119 (199)
Q Consensus 73 ~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~ 119 (199)
.+--.++|++| |+|++ |.+|+|+++|+|+|.++...+.....+.-
T Consensus 189 l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s 233 (299)
T PRK13592 189 LIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTN 233 (299)
T ss_pred HHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHh
Confidence 67779999999 88885 59999999999999999988877666553
No 48
>PLN02776 prenyltransferase
Probab=98.25 E-value=0.00016 Score=64.40 Aligned_cols=96 Identities=8% Similarity=0.029 Sum_probs=71.9
Q ss_pred hhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHh
Q 029099 10 GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRN 89 (199)
Q Consensus 10 ~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~ 89 (199)
...|| .+|++......++...|.++++++|.+.+++ +++..+++.....+|+..=-+.=-+.|.|+|++
T Consensus 113 ~~vYt----~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~-------~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ 181 (341)
T PLN02776 113 AFVYT----PLKQIHPANTWVGAVVGAIPPLMGWAAASGQ-------LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAA 181 (341)
T ss_pred HHHHH----hHccCCchhHHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 45788 4899988888888889989999999999988 567777777778888773233334567789999
Q ss_pred cCCccccccc--ChhhHHHHHHHHHHHHH
Q 029099 90 VGKMSPLVRL--GTERGSVVVKWAVMILY 116 (199)
Q Consensus 90 ~Gk~Tlav~l--G~~~a~~l~~~l~~~~y 116 (199)
+|.+.+++.- |+++++..........-
T Consensus 182 ag~pmlpv~~~~g~~ta~~i~~~~~~l~~ 210 (341)
T PLN02776 182 GGYRMLSLADATGRRTALVALRNCLYLAP 210 (341)
T ss_pred CCCcccCccccchHHHHHHHHHHHHHHHH
Confidence 9999999865 57777766655444433
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.075 Score=46.67 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=87.0
Q ss_pred hhccCCCCcccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCChHhhHh
Q 029099 10 GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRN 89 (199)
Q Consensus 10 ~~~YS~~P~~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~ 89 (199)
...||. .+|||-.-.++.+-.=|-.+++.+|.+.+|+ +++..+++...+.+|+-.=-++=-++-.|+=++
T Consensus 136 v~vYT~---~lKR~T~~NiviGg~aGa~PpliGwaAvtg~-------~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~ 205 (304)
T COG0109 136 VVVYTL---WLKRRTPQNIVIGGFAGAMPPLIGWAAVTGS-------ISLGAILLFAIIFLWTPPHFWALALKYKDDYKA 205 (304)
T ss_pred hhhhhh---hccCCcccceeeeeccccccccceeeeeeCC-------CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 567895 7999988777776666889999999999988 456666555555555433222333344566789
Q ss_pred cCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHh
Q 029099 90 VGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALP-LSCIFLCAMTSPIGKLVVSYVEE 152 (199)
Q Consensus 90 ~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p-~~~~ll~ll~lP~a~~~~~~~~~ 152 (199)
+|.--+|+.-|++..++-......+-....+.....|... ........+........+|..++
T Consensus 206 AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~ 269 (304)
T COG0109 206 AGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRK 269 (304)
T ss_pred cCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998876554444444434444455432 22223444556666666666665
No 50
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=95.94 E-value=0.2 Score=43.35 Aligned_cols=39 Identities=21% Similarity=-0.012 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc
Q 029099 59 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV 97 (199)
Q Consensus 59 ~~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav 97 (199)
....+..+...+..++....||+.|+|.||++-+ |-+|.
T Consensus 47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~s 88 (289)
T COG0382 47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPS 88 (289)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCC
Confidence 4566667777888889999999999999999887 44444
No 51
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=95.21 E-value=0.37 Score=42.25 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccChh
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE 102 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~~ 102 (199)
.+...+-..+...+-+..||+-|+|-|+++.| ++=|.-=|+-
T Consensus 46 ~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~i 88 (294)
T PRK12873 46 LLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKI 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCC
Confidence 44555566677888899999999999998877 4666555543
No 52
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=94.76 E-value=2.3 Score=37.22 Aligned_cols=81 Identities=12% Similarity=0.038 Sum_probs=46.8
Q ss_pred HHHHHHhhccCCCCcccccccchH-HHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Q 029099 4 TCAVICGYIYQCPPFRLSYQGLGE-PLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 82 (199)
Q Consensus 4 ~~~~~~~~~YS~~P~~l~y~glGe-~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~ 82 (199)
...++..+.||. ++|++++-+ +.+..+|+.-...|+... ... .+...+..+...+++....-=.+|..
T Consensus 122 ~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~~a~-~~~-------~s~wll~~~~~~~lfla~~kR~~E~~ 190 (295)
T PRK12324 122 LVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGGVAI-GVP-------LSPWLLLCTALLSLFLAAGKRKAELR 190 (295)
T ss_pred HHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHHHHh-CCC-------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567789994 899999754 444556665444444322 222 33344444445555555555666777
Q ss_pred ChHhhHhcCCccc
Q 029099 83 QVEGDRNVGKMSP 95 (199)
Q Consensus 83 Die~D~~~Gk~Tl 95 (199)
+.++|.+..|+++
T Consensus 191 ~~~~~~~~~r~~~ 203 (295)
T PRK12324 191 LLEDTGAKHRKVL 203 (295)
T ss_pred HHhhccccccccc
Confidence 7666655555554
No 53
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=93.87 E-value=1.2 Score=38.12 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccCh
Q 029099 60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGT 101 (199)
Q Consensus 60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~ 101 (199)
..++..+...+...+....||+-|+|.|+++ |++=|..-|+
T Consensus 38 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 38 EALLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 3444445555666777889999999999998 6666766664
No 54
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=93.48 E-value=0.96 Score=39.64 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhc-CCccccc---ccChhhHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNV-GKMSPLV---RLGTERGSVVVKWAVMIL 115 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~-Gk~Tlav---~lG~~~a~~l~~~l~~~~ 115 (199)
.++..+..++...+....||+-|+|.||++ .|+.=|. ++.++.+..+...+..++
T Consensus 48 ~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 48 VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 344444566677788899999999999996 3333333 345555555544444444
No 55
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=93.47 E-value=1.3 Score=36.68 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCChHhhHhc-CCcccccccChhh
Q 029099 68 VGLTTSLILFCSHFHQVEGDRNV-GKMSPLVRLGTER 103 (199)
Q Consensus 68 ~~l~~~~il~~nn~~Die~D~~~-Gk~Tlav~lG~~~ 103 (199)
..+...++...||.-|.|.|+.+ +|..-|..-|+-+
T Consensus 32 ~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 32 VFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 34666677789999999999996 3344444344433
No 56
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=93.46 E-value=1.1 Score=39.11 Aligned_cols=51 Identities=8% Similarity=-0.039 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHHHHHHHHHHHHHH
Q 029099 69 GLTTSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSLLF 120 (199)
Q Consensus 69 ~l~~~~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~~~l~~~~y~~~~ 120 (199)
.+...+.-..||+-|.|.|++.++ +=|+ ++.++.+......+..++.++..
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~ 117 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGIAIAF 117 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 455566678999999999998764 3333 35555555555444444444433
No 57
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=93.33 E-value=3.4 Score=35.51 Aligned_cols=50 Identities=4% Similarity=-0.018 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcC---Cccccc-ccChhhHHHHHH
Q 029099 60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVG---KMSPLV-RLGTERGSVVVK 109 (199)
Q Consensus 60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~G---k~Tlav-~lG~~~a~~l~~ 109 (199)
..++..+...+...+....||+-|+|.|+++. .|.+|. ++.++.+.....
T Consensus 37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 34555566677788888999999999999873 234433 445555554443
No 58
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=93.21 E-value=2.4 Score=36.94 Aligned_cols=42 Identities=10% Similarity=-0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccChhh
Q 029099 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTER 103 (199)
Q Consensus 62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~~~ 103 (199)
++..+-..+..++-...||+-|+|-|++..| ++-|..=|+-.
T Consensus 48 ~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is 90 (289)
T PLN02809 48 ALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALT 90 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCC
Confidence 3444555677777789999999999998766 46666667543
No 59
>PRK08238 hypothetical protein; Validated
Probab=92.72 E-value=7.4 Score=36.38 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=45.8
Q ss_pred HHHHHhhccCCCCcccccccc-hHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099 5 CAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 83 (199)
Q Consensus 5 ~~~~~~~~YS~~P~~l~y~gl-Ge~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D 83 (199)
..++....|| +++|++++ +-+...+.|+.=...|+ .+. + ++.+.+++.. ..++...+.+.+-..|
T Consensus 303 ~~~~~~~~Ys---~~lKr~~~~~~~~la~~~~lr~~~G~-~a~-~--------~~~s~wll~~-~~~~~l~la~~KR~~E 368 (479)
T PRK08238 303 AYLALTLAYS---LRLKRKVLVDVLTLAALYTLRIIAGA-AAI-G--------VALSFWLLAF-SMFFFLSLALVKRYTE 368 (479)
T ss_pred HHHHHHHHhh---HHhcCCccccchHHHHHHHHHHHHHH-HHh-c--------cCHHHHHHHH-HHHHHHHHHHHHhHHH
Confidence 3445567899 48999996 55555666665444454 332 2 2344444432 2244556667888889
Q ss_pred hHhhHhcCC
Q 029099 84 VEGDRNVGK 92 (199)
Q Consensus 84 ie~D~~~Gk 92 (199)
.+.|+..|+
T Consensus 369 l~~~~~~~~ 377 (479)
T PRK08238 369 LRRALQRGK 377 (479)
T ss_pred HHHHHhcCC
Confidence 998888887
No 60
>PLN02776 prenyltransferase
Probab=92.60 E-value=7.4 Score=34.88 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-ccccc---ccChhhHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAV 112 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav---~lG~~~a~~l~~~l~ 112 (199)
..+..+-..+...+-...||+-|+|-|++..| +.=|. ++.++.+......+.
T Consensus 31 l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~ 86 (341)
T PLN02776 31 LGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG 86 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34455566677777889999999999988655 33344 344444444433333
No 61
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=92.51 E-value=3.7 Score=35.12 Aligned_cols=53 Identities=15% Similarity=-0.117 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccC---hhhHHHHHHHHHHHH
Q 029099 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL 115 (199)
Q Consensus 62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG---~~~a~~l~~~l~~~~ 115 (199)
++..+...+...+....||+-|+|.|+.+. ++=|..-| ++.+......+..++
T Consensus 41 ~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 41 GLAFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 344445556667778899999999999644 44455444 455554444444444
No 62
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=92.33 E-value=6.2 Score=34.02 Aligned_cols=41 Identities=12% Similarity=-0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccChh
Q 029099 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE 102 (199)
Q Consensus 62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~~ 102 (199)
++..+...+...+-...||+-|+|-|++..| +.=|.-=|+-
T Consensus 43 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 84 (281)
T TIGR01474 43 GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAV 84 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCc
Confidence 3344444556677779999999999997654 2334434543
No 63
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=92.14 E-value=5.9 Score=34.12 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc-ccChhhHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav-~lG~~~a~~l~~~l~~~~y 116 (199)
.+...+...+...+-...||+-|+|-|++..| |.+|. ++.++.+......+..++.
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~ 97 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGT 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence 34445555666777889999999999998654 44433 3455555544444434333
No 64
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=92.08 E-value=7.9 Score=33.99 Aligned_cols=53 Identities=6% Similarity=-0.093 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChHhhHhcCC-ccccc---ccChhhHHHHHHHHHHHHH
Q 029099 64 ASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV---RLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 64 ~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav---~lG~~~a~~l~~~l~~~~y 116 (199)
..+...+...+-...||+-|+|-|++..| +.=|. ++.++.+..+...+..++.
T Consensus 52 ~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~ 108 (306)
T PRK13362 52 AVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGF 108 (306)
T ss_pred HHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 33456677778889999999999997654 23333 3444555444444444443
No 65
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=91.51 E-value=8.5 Score=33.40 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---cccc-cccChhhHHHHHHHHHHHHHHH
Q 029099 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tla-v~lG~~~a~~l~~~l~~~~y~~ 118 (199)
++..+...+...+-...||+-|+|-|++..| |.+| =++.++.+..+...+...+.+.
T Consensus 47 ~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l 107 (296)
T PRK04375 47 LLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLL 107 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3444445566677789999999999998643 3333 2445555555554444444433
No 66
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=91.38 E-value=2.9 Score=36.31 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=16.4
Q ss_pred HhcCCCChHhhHhcCCccc
Q 029099 77 FCSHFHQVEGDRNVGKMSP 95 (199)
Q Consensus 77 ~~nn~~Die~D~~~Gk~Tl 95 (199)
..||+.|.|.||++.||..
T Consensus 63 ~iND~~D~D~Dr~~prk~~ 81 (282)
T PRK12875 63 GVNDVFDADTDELNPKKDR 81 (282)
T ss_pred cchhhhhhhccccCCCccC
Confidence 4799999999999888763
No 67
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=90.91 E-value=6.1 Score=34.76 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccCh
Q 029099 60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGT 101 (199)
Q Consensus 60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~ 101 (199)
...+..+.+...-++=+..||+-|+|-|+++-| ++=|.--|+
T Consensus 48 ~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 48 TISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 355677777788888899999999999999885 344444454
No 68
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=90.79 E-value=3.6 Score=35.42 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccC---hhhHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLG---TERGSVVVK 109 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG---~~~a~~l~~ 109 (199)
.++..+...+...+....||+-|+|-|++..| ++=|..-| ++.+..+..
T Consensus 47 ~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 99 (285)
T PRK12847 47 LVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLF 99 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHH
Confidence 34444455567777789999999999997554 23444344 444444333
No 69
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=90.68 E-value=11 Score=32.91 Aligned_cols=54 Identities=6% Similarity=-0.078 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccc---cccChhhHHHHHHHHHH
Q 029099 60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPL---VRLGTERGSVVVKWAVM 113 (199)
Q Consensus 60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~-Tla---v~lG~~~a~~l~~~l~~ 113 (199)
..++..+...+..++-...||+-|+|-|+++-|. .=| =++.++.|......+..
T Consensus 38 ~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~ 95 (286)
T PRK12895 38 KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIA 95 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3444445556777788899999999999988433 222 23444445444443333
No 70
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=90.60 E-value=6.1 Score=33.74 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 029099 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGK 92 (199)
Q Consensus 62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk 92 (199)
+...+...+...+....||+-|.|.|+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 3444455666777888999999999997654
No 71
>PRK13592 ubiA prenyltransferase; Provisional
Probab=90.18 E-value=8.1 Score=34.05 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-ccccc-ccChhhHHHHHHHHHHHHHHH
Q 029099 57 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 57 ~~~~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav-~lG~~~a~~l~~~l~~~~y~~ 118 (199)
...+.++..+-..+.+.+.-.+||+.|+|-||.+.- |-+|- ++-++.++.+...+...+..+
T Consensus 44 ~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L 107 (299)
T PRK13592 44 IGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLL 107 (299)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 333445545555566677789999999999986542 22222 445566665554554444443
No 72
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=90.07 E-value=11 Score=32.35 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC-Cccccc-ccChhhHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLV-RLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G-k~Tlav-~lG~~~a~~l~~~l~~~~y 116 (199)
.++..+...+...+....||+-|+|.|+... .|.+|. ++.++.+......+...+.
T Consensus 39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 3444555667777778999999999999764 233332 4555666555555544444
No 73
>PRK08238 hypothetical protein; Validated
Probab=90.00 E-value=4.4 Score=37.90 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC-Cccccc---ccChhhHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLV---RLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G-k~Tlav---~lG~~~a~~l~~~l~~~~y 116 (199)
.++..+..++..++....||+-|+|.||++- ||.=|. ++.++.+..+...+..++.
T Consensus 228 ~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~ 287 (479)
T PRK08238 228 ALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGL 287 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4455556778888999999999999999984 344444 3445555555544444443
No 74
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=89.00 E-value=7.2 Score=33.34 Aligned_cols=45 Identities=11% Similarity=-0.084 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCCChHhhHhcCCcccccc---cChhhHHHHHHHHH
Q 029099 67 LVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAV 112 (199)
Q Consensus 67 p~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~---lG~~~a~~l~~~l~ 112 (199)
...+...+....||+-|+|.|+.++ ++=|.. +-++.+......+.
T Consensus 45 ~~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~ 92 (277)
T PRK12883 45 VVYLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLF 92 (277)
T ss_pred HHHHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHH
Confidence 3334446677899999999999754 444444 44555555444333
No 75
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=87.69 E-value=4.1 Score=35.77 Aligned_cols=47 Identities=6% Similarity=-0.123 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCChHhhHhcCC-cccc-cccChhhHHHHHHHHHHHHH
Q 029099 70 LTTSLILFCSHFHQVEGDRNVGK-MSPL-VRLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 70 l~~~~il~~nn~~Die~D~~~Gk-~Tla-v~lG~~~a~~l~~~l~~~~y 116 (199)
+...+.-..||+-|.|.|+++++ |.++ =++.++.+......+..++.
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 34456678999999999997643 2222 24555666665555444433
No 76
>PRK13595 ubiA prenyltransferase; Provisional
Probab=87.60 E-value=17 Score=31.83 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHH
Q 029099 74 LILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVV 108 (199)
Q Consensus 74 ~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~ 108 (199)
.+--.||+-|.|.|+++.|+- ++ ++.++.++.+.
T Consensus 62 ~~~giND~fD~eiDa~Npr~~-~i~~G~is~~~~~~~~ 98 (292)
T PRK13595 62 LIYGLNDLADRETDAASPRKG-GWQGARLSPGEVRPLL 98 (292)
T ss_pred HHHHHHhhhhhhhhccCCCCC-CCCcCccCHHHHHHHH
Confidence 445799999999999877653 33 34444444433
No 77
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=87.52 E-value=11 Score=32.65 Aligned_cols=62 Identities=10% Similarity=-0.101 Sum_probs=34.5
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhcCCCChHhhHhcCCcc------ccc-ccChhhHHHHHHHHHHHHHHH
Q 029099 57 ITATVLSASL-LVGLTTSLILFCSHFHQVEGDRNVGKMS------PLV-RLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 57 ~~~~~l~~sl-p~~l~~~~il~~nn~~Die~D~~~Gk~T------lav-~lG~~~a~~l~~~l~~~~y~~ 118 (199)
+++...+... ...+...+.-..||.-|.|.|+...+|| ++- ++-++.+......+..++...
T Consensus 37 f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~ 106 (296)
T PRK05951 37 FDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQL 106 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 4555444443 4445556667899999977766665443 221 244566665555544444333
No 78
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=87.42 E-value=18 Score=31.14 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc-ccChhhHHHHHHHHHHHH
Q 029099 66 LLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMIL 115 (199)
Q Consensus 66 lp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav-~lG~~~a~~l~~~l~~~~ 115 (199)
+...+...+-...||+-|.|-|++..| |.+|- ++.++.+......+..++
T Consensus 49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 333455677789999999999986554 33332 334444444444443333
No 79
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=87.38 E-value=19 Score=31.32 Aligned_cols=41 Identities=7% Similarity=-0.059 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC-cccccccCh
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGT 101 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk-~Tlav~lG~ 101 (199)
..+..+...+...+-...||+-|+|-|++..| +.=|..=|+
T Consensus 44 l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~ 85 (291)
T PRK12886 44 LDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGL 85 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCC
Confidence 44455555566666778899999999998753 123444553
No 80
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=87.26 E-value=4.8 Score=35.37 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=21.2
Q ss_pred HhcCCCChHhhHhcCCcccccc---cChhhHHHHHH
Q 029099 77 FCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVK 109 (199)
Q Consensus 77 ~~nn~~Die~D~~~Gk~Tlav~---lG~~~a~~l~~ 109 (199)
-.||+-|+|.||.+ |++.|+- +-++.++.+..
T Consensus 71 ~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~ 105 (308)
T PRK12887 71 GLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVI 105 (308)
T ss_pred HHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHH
Confidence 39999999999964 5666654 44444444443
No 81
>PLN00012 chlorophyll synthetase; Provisional
Probab=86.97 E-value=12 Score=33.89 Aligned_cols=50 Identities=8% Similarity=-0.124 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHHHHHHHHHHHH
Q 029099 68 VGLTTSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 68 ~~l~~~~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~~~l~~~~y~~ 118 (199)
..+...+.-..||+-|.|.|++.+ ++=|+ ++.++.+......+...+..+
T Consensus 132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~~l~l 184 (375)
T PLN00012 132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLGGLGL 184 (375)
T ss_pred HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHHHHHH
Confidence 334455566899999999998875 23333 344555555444444434333
No 82
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=86.94 E-value=12 Score=32.67 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=17.1
Q ss_pred HhcCCCChHhhHhcCCccccc
Q 029099 77 FCSHFHQVEGDRNVGKMSPLV 97 (199)
Q Consensus 77 ~~nn~~Die~D~~~Gk~Tlav 97 (199)
-.||+-|.|.|+.+.||.=+.
T Consensus 52 ~~Ndy~D~~~d~dn~r~~g~~ 72 (282)
T PRK13105 52 GINDVFDYESDLRNPRKGGVE 72 (282)
T ss_pred hhhhhhhhhcCCCCcccCCCC
Confidence 569999999999988775543
No 83
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=86.69 E-value=6.1 Score=35.14 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHHHhcCCCChHhhHhcCCccccc---ccChhhHHHHHHHHHHHHHHH
Q 029099 74 LILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 74 ~il~~nn~~Die~D~~~Gk~Tlav---~lG~~~a~~l~~~l~~~~y~~ 118 (199)
+-...||+-|.|.|+.++ ||=|. ++.++.+......+..++.++
T Consensus 65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~l 111 (331)
T PRK12392 65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGL 111 (331)
T ss_pred HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHH
Confidence 346799999999999764 44443 344666666666555544433
No 84
>PRK13591 ubiA prenyltransferase; Provisional
Probab=86.43 E-value=6.7 Score=34.68 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHhhHhc
Q 029099 64 ASLLVGLTTSLILFCSHFHQVEGDRNV 90 (199)
Q Consensus 64 ~slp~~l~~~~il~~nn~~Die~D~~~ 90 (199)
.++..++.+.+....||.-|+|.|+-+
T Consensus 63 ~~~~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 63 TCIAGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHHHHHHHHHhhhccchhhhcc
Confidence 455667778888899999999999875
No 85
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=86.27 E-value=20 Score=30.64 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC---ccccc-ccChhhHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk---~Tlav-~lG~~~a~~l~~~l~~~~y 116 (199)
.++..+...+...+-...||+-|+|-|++..| |.+|- ++.++.+..+...+...+.
T Consensus 37 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~ 96 (280)
T TIGR01473 37 LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGV 96 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 34445556677777789999999999997543 43333 4445555555544444433
No 86
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=86.09 E-value=23 Score=31.05 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG 91 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G 91 (199)
.++..+...+..++-...||+-|+|-|++..
T Consensus 51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~ 81 (300)
T PRK13106 51 LILIFLALFFLRTAGMTNDNLADLEIDAKNP 81 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 3445555667777778899999999999874
No 87
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=85.68 E-value=17 Score=31.51 Aligned_cols=40 Identities=10% Similarity=-0.130 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHhhHhcCCc-ccccccCh
Q 029099 62 LSASLLVGLTTSLILFCSHFHQVEGDRNVGKM-SPLVRLGT 101 (199)
Q Consensus 62 l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~-Tlav~lG~ 101 (199)
++..+...+..++-...||+-|+|-|++..|. .=|.-=|+
T Consensus 49 ~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 49 GIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 34444455667777899999999999865542 33433343
No 88
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=85.01 E-value=18 Score=31.61 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCCChHhhHhc-----CC-----cccc---cccChhhHHHHHHHHHHHHHHH
Q 029099 65 SLLVGLTTSLILFCSHFHQVEGDRNV-----GK-----MSPL---VRLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 65 slp~~l~~~~il~~nn~~Die~D~~~-----Gk-----~Tla---v~lG~~~a~~l~~~l~~~~y~~ 118 (199)
.+...+...+-...||+-|.|.|+.+ +| ++=| =++-++.+..+...+..++..+
T Consensus 47 ~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 47 ALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 33333334444599999999999753 11 1222 2456666666666655555444
No 89
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.44 E-value=28 Score=30.63 Aligned_cols=31 Identities=6% Similarity=-0.166 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcC
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG 91 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~G 91 (199)
.++..+...+...+-...||+-|.|-|++..
T Consensus 74 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~ 104 (314)
T PRK12878 74 LFLFFVGAIAMRGAGCTYNDIVDRDIDAKVA 104 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3444444556666778999999999998754
No 90
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=82.75 E-value=31 Score=29.94 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 029099 63 SASLLVGLTTSLILFCSHFHQVEGDRNVGK 92 (199)
Q Consensus 63 ~~slp~~l~~~~il~~nn~~Die~D~~~Gk 92 (199)
+..+...+...+-...||+-|+|-|++..|
T Consensus 51 l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 51 LGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 333344455556678899999999998853
No 91
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=81.76 E-value=10 Score=32.57 Aligned_cols=46 Identities=7% Similarity=-0.174 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCChHhhHhcCC-ccccc-ccChhhHHHHHHHHHHHH
Q 029099 70 LTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMIL 115 (199)
Q Consensus 70 l~~~~il~~nn~~Die~D~~~Gk-~Tlav-~lG~~~a~~l~~~l~~~~ 115 (199)
+...+.-..||+-|.|.|+++++ |.++. ++-++.+..+...+..++
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34445558999999999998653 32222 445566666554444433
No 92
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=81.72 E-value=34 Score=29.62 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCC
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK 92 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk 92 (199)
.++..+...+...+-...||+-|+|-|+++.|
T Consensus 41 ~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~R 72 (284)
T PRK12888 41 LLLVTVAMVGARTFAMAANRIIDREIDARNPR 72 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCC
Confidence 44555566677778889999999999998853
No 93
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=74.16 E-value=57 Score=28.70 Aligned_cols=68 Identities=6% Similarity=-0.085 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHH-HHHHHHHHhcCCCChHhhHhcC-----Ccccc-cccChhhHHHHHHHHHHHHHHHHHHHHH
Q 029099 57 ITATVLSASLLVG-LTTSLILFCSHFHQVEGDRNVG-----KMSPL-VRLGTERGSVVVKWAVMILYSLLFAIGL 124 (199)
Q Consensus 57 ~~~~~l~~slp~~-l~~~~il~~nn~~Die~D~~~G-----k~Tla-v~lG~~~a~~l~~~l~~~~y~~~~~~~~ 124 (199)
+++...+.++... +.-.+.=..||.-|.+.|+... .|+++ -.+-+|...+....+...+.++-+.+..
T Consensus 36 ~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~ 110 (317)
T PRK13387 36 FDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCM 110 (317)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444433 3455556899999987765543 23222 2344556666666666666665444544
No 94
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=65.30 E-value=58 Score=28.73 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHH-Hhcc-chHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 029099 80 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRA-LPLSCIFLCAMTSPIGKLVVSYVEENHKDK 157 (199)
Q Consensus 80 n~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~-~~g~-~p~~~~ll~ll~lP~a~~~~~~~~~~~~~~ 157 (199)
-..|-+.|.++|.++.+.|+|++.-.++-..-. .....+.... ..|. .|+.. . +. -.+.++..+.... |.
T Consensus 245 AHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a-~~ia~La~aG~~s~q~~pyy~---~-lg-~~~~~L~~~i~~v--di 316 (353)
T KOG1381|consen 245 AHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGA-AQIASLAAAGIASDQTWPYYA---A-LG-AVAARLGSQIYKV--DI 316 (353)
T ss_pred hcccchhhhHhcchhhhhhcCCCCchHHhhhhH-HHHHHHHHhhhccCCCchHHH---H-HH-HHHHHHHhheeee--ec
Confidence 468999999999999999999887666653322 2222222222 2233 23321 1 11 1122333332221 22
Q ss_pred chhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029099 158 GKIFMAKYYCVRFHALFGAALVAGLITARI 187 (199)
Q Consensus 158 ~~~~~~~~~t~~~~~l~~~ll~~glll~~~ 187 (199)
++....- .-.+.+.-.|+.+..|+.++++
T Consensus 317 Dnp~dC~-k~f~sN~ntGli~~~~i~~d~l 345 (353)
T KOG1381|consen 317 DNPSDCW-KKFKSNSNTGLILFSGIVLDTL 345 (353)
T ss_pred CChHHHH-HHHHhcCcchHHHHHHHHHHHH
Confidence 2221211 1344556678888888888777
No 95
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=64.69 E-value=94 Score=26.90 Aligned_cols=62 Identities=11% Similarity=-0.070 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHH-HHHHHHHHhcCCCChHh-----hHhcCCccccc-ccChhhHHHHHHHHHHHHHHH
Q 029099 57 ITATVLSASLLVG-LTTSLILFCSHFHQVEG-----DRNVGKMSPLV-RLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 57 ~~~~~l~~slp~~-l~~~~il~~nn~~Die~-----D~~~Gk~Tlav-~lG~~~a~~l~~~l~~~~y~~ 118 (199)
+++...+.++... +.-...=..||.-|.+. ||..+.|+++- .+-++..+.....+...+.++
T Consensus 25 f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~ 93 (284)
T TIGR00751 25 FVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALS 93 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666555555443 44455568999999844 33334555432 233445555544444444444
No 96
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=63.58 E-value=99 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHH-HHHHHHHHhcCCCChHh--hH
Q 029099 57 ITATVLSASLLVG-LTTSLILFCSHFHQVEG--DR 88 (199)
Q Consensus 57 ~~~~~l~~slp~~-l~~~~il~~nn~~Die~--D~ 88 (199)
+++...++++... +.-.+.=+.||.-|.+. |+
T Consensus 32 f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~ 66 (285)
T TIGR02235 32 FHLDRFALFLIAAILILAWINLTNDVFDSDTGIDR 66 (285)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 5566555554433 33334447899999777 65
No 97
>PLN02878 homogentisate phytyltransferase
Probab=63.23 E-value=75 Score=27.76 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.3
Q ss_pred HHhcCCCChHhhHhcCCcccccccCh
Q 029099 76 LFCSHFHQVEGDRNVGKMSPLVRLGT 101 (199)
Q Consensus 76 l~~nn~~Die~D~~~Gk~Tlav~lG~ 101 (199)
.=.||+.|+|-|| .+|-..|+-=|+
T Consensus 40 vglNd~~D~EIDk-INkP~rPIpSG~ 64 (280)
T PLN02878 40 VGLNQLYDIEIDK-VNKPYLPLASGE 64 (280)
T ss_pred echhhhhhhcccc-cCCCCCCCCCCC
Confidence 3579999999995 778888887774
No 98
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=58.31 E-value=1.3e+02 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHH-HHHHHHhcCCCChH--hhHh
Q 029099 57 ITATVLSASLLVGLT-TSLILFCSHFHQVE--GDRN 89 (199)
Q Consensus 57 ~~~~~l~~slp~~l~-~~~il~~nn~~Die--~D~~ 89 (199)
+++...++++..++. -.+.=..||.-|.+ .|++
T Consensus 45 f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 80 (304)
T PRK07419 45 FRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN 80 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 556655555443333 33444789999988 4664
No 99
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=55.18 E-value=99 Score=26.46 Aligned_cols=58 Identities=7% Similarity=-0.138 Sum_probs=30.5
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhcCCCChHh--hHh---cCCccccc-ccChhhHHHHHHHHHHHH
Q 029099 58 TATVLS-ASLLVGLTTSLILFCSHFHQVEG--DRN---VGKMSPLV-RLGTERGSVVVKWAVMIL 115 (199)
Q Consensus 58 ~~~~l~-~slp~~l~~~~il~~nn~~Die~--D~~---~Gk~Tlav-~lG~~~a~~l~~~l~~~~ 115 (199)
++...+ ..+...+...+.-..||+-|.|. |++ .+.|+++- ++-++.+......+...+
T Consensus 36 ~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~ 100 (293)
T PRK06080 36 HPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLA 100 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHH
Confidence 443333 33444556667778999999853 532 22343332 244556555554444443
No 100
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=51.90 E-value=8.6 Score=31.51 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.4
Q ss_pred HHHHhcCCCChHhhH----------hcCCcccccccC
Q 029099 74 LILFCSHFHQVEGDR----------NVGKMSPLVRLG 100 (199)
Q Consensus 74 ~il~~nn~~Die~D~----------~~Gk~Tlav~lG 100 (199)
+.-+.|+++|+.+|. +.||.|+|....
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 455799999998887 899999999877
No 101
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=47.15 E-value=2.1e+02 Score=25.42 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=35.5
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhcCCCChHhhHhcC----CcccccccChhhHHHHHHHHHHHHHHH
Q 029099 57 ITATVLSASL-LVGLTTSLILFCSHFHQVEGDRNVG----KMSPLVRLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 57 ~~~~~l~~sl-p~~l~~~~il~~nn~~Die~D~~~G----k~Tlav~lG~~~a~~l~~~l~~~~y~~ 118 (199)
.++..++.++ -..+.+.+---.||.-|+|-|+.-. |-+..=++-++.+...-..+..++..+
T Consensus 49 ~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~ 115 (304)
T COG0109 49 INPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSL 115 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3444444443 3445555566889999999997654 334444555565555544444444443
No 102
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=36.93 E-value=1.6e+02 Score=21.18 Aligned_cols=40 Identities=20% Similarity=0.117 Sum_probs=32.3
Q ss_pred cccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 029099 93 MSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC 132 (199)
Q Consensus 93 ~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~ 132 (199)
|-=-.++-..++-+++..++..+|+-+..+...|.+-||.
T Consensus 43 R~G~LrfeTTRGDRLFisLLgsAyIhLAWlGLvg~nlWwa 82 (97)
T COG5477 43 RVGILRFETTRGDRLFISLLGSAYIHLAWLGLVGENLWWA 82 (97)
T ss_pred ceeeEEeeecccceehHHHHHHHHHHHHHHHhccccHHHH
Confidence 3334566667788899999999999999999999876765
No 103
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=35.43 E-value=2.6e+02 Score=23.24 Aligned_cols=94 Identities=20% Similarity=0.086 Sum_probs=55.2
Q ss_pred ccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC--hHhhHhcCCcccc
Q 029099 19 RLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ--VEGDRNVGKMSPL 96 (199)
Q Consensus 19 ~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~l~~slp~~l~~~~il~~nn~~D--ie~D~~~Gk~Tla 96 (199)
++..|.-+++...+.|....+....+....+-+....-.+.-.|+.++..++...+-++.+|.+| .|.-.-++..--.
T Consensus 7 ~l~~r~~~~~~~~llF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~ 86 (211)
T TIGR01190 7 RLAFRAGGGILNPLWFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLEL 86 (211)
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHH
Confidence 45556656666666666555555545544321100011112344555556666777778777777 5666666677778
Q ss_pred cccChhhHHHHHHHHH
Q 029099 97 VRLGTERGSVVVKWAV 112 (199)
Q Consensus 97 v~lG~~~a~~l~~~l~ 112 (199)
+.+||--+.++.....
T Consensus 87 i~l~K~la~wl~~~l~ 102 (211)
T TIGR01190 87 TVLAKVLAHWLVTGLP 102 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887775544
No 104
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=35.22 E-value=32 Score=21.89 Aligned_cols=23 Identities=4% Similarity=-0.164 Sum_probs=17.5
Q ss_pred HHHHHhcCCCChHhhHhcCCccc
Q 029099 73 SLILFCSHFHQVEGDRNVGKMSP 95 (199)
Q Consensus 73 ~~il~~nn~~Die~D~~~Gk~Tl 95 (199)
.=....|+++|.++|-..|+=++
T Consensus 19 lyl~ald~~CDQg~~F~~GIC~i 41 (47)
T PRK10299 19 LWAQVFNMMCDQDVQFFSGICAI 41 (47)
T ss_pred HHHHHHHHHhcCCccceeeeeee
Confidence 44456799999999998887543
No 105
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.39 E-value=1.8e+02 Score=24.97 Aligned_cols=58 Identities=7% Similarity=-0.075 Sum_probs=25.4
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 029099 95 PLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEE 152 (199)
Q Consensus 95 lav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~~ll~ll~lP~a~~~~~~~~~ 152 (199)
+++++|+|+-.+.........-+....+......+......-.+++++++...-.+..
T Consensus 51 l~Ik~~~kwI~r~i~~v~V~~~l~yvfl~llsIf~~~~~~i~~~si~~aI~~~~lL~~ 108 (277)
T COG3389 51 LAIKLGRKWIFRGIYSVAVASVLFYVFLILLSIFLVLVYAINIASIGLAIGLVYLLYK 108 (277)
T ss_pred hheeecceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3556666655554333332222222122222222332223445677777776555533
No 106
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=29.37 E-value=2.2e+02 Score=20.55 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=34.4
Q ss_pred HhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHHHHHHHHhccchHHH
Q 029099 77 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC 132 (199)
Q Consensus 77 ~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~~~~~~~~g~~p~~~ 132 (199)
..-+++.= ++.+.|.--++. .++-+++..++..+|+.+..+.+.|..-|++
T Consensus 23 tvwe~~~P-~~~R~GfLpi~T----TRGDRLFIsLL~sA~I~L~Wlgl~~~~lW~a 73 (88)
T PF09928_consen 23 TVWEIRSP-TVERKGFLPIET----TRGDRLFISLLGSAFIHLAWLGLVGPSLWIA 73 (88)
T ss_pred HHHHhcCC-CCCcCceecccC----CCcchhHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 33445544 555556544444 5566899999999999999999988544433
No 107
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=29.30 E-value=1.9e+02 Score=23.77 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHHHH
Q 029099 63 SASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVV 107 (199)
Q Consensus 63 ~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l 107 (199)
+-|+|.+.+..-...-.|+|+. +|...|-.+.--.+|++.+...
T Consensus 15 lGsip~~~ii~k~~~~~DiR~~-GSgN~GatNv~R~~G~~~gilv 58 (198)
T PRK00220 15 LGSIPFALLVGKLFGLPDPREH-GSGNPGATNVLRIGGKKAAIAT 58 (198)
T ss_pred HHhhhHHHHHHHHhCCCChhhc-CCCCccHHHHHHHHchHHHHHH
Confidence 4577788877776656689888 7777777777666777665543
No 108
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=28.19 E-value=16 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCChHhhHhc--CCcccccccChhh
Q 029099 72 TSLILFCSHFHQVEGDRNV--GKMSPLVRLGTER 103 (199)
Q Consensus 72 ~~~il~~nn~~Die~D~~~--Gk~Tlav~lG~~~ 103 (199)
..+.-+.||++|++.|.+. ||.|+|..+-.+.
T Consensus 153 g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 153 GLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh
Confidence 3356689999999999998 7888887665443
No 109
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=26.85 E-value=25 Score=29.63 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHhcCCCChHhhHhcCCcccccc
Q 029099 74 LILFCSHFHQVEGDRNVGKMSPLVR 98 (199)
Q Consensus 74 ~il~~nn~~Die~D~~~Gk~Tlav~ 98 (199)
++-++|-+||+.+|.+.||..+|.-
T Consensus 154 AlqltnilRdv~eD~~~gR~YlP~d 178 (265)
T cd00683 154 ALQLTNILRDVGEDARRGRIYLPRE 178 (265)
T ss_pred HHHHHHHHHHHHHHHccCCCcCCHH
Confidence 5667899999999999999988853
No 110
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=26.14 E-value=25 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.4
Q ss_pred CCCCcccccccchHHH
Q 029099 14 QCPPFRLSYQGLGEPL 29 (199)
Q Consensus 14 S~~P~~l~y~glGe~~ 29 (199)
+.||+.+...|+||+-
T Consensus 39 ~~pPFevte~GWGeF~ 54 (84)
T PF03366_consen 39 TKPPFEVTETGWGEFE 54 (84)
T ss_dssp SSTTEEEEEEESS--E
T ss_pred cCCCCEEEEeEeccEE
Confidence 5699999999999974
No 111
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=24.21 E-value=36 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.1
Q ss_pred HHHHHhcCCCChHhhHhcCCcccccc
Q 029099 73 SLILFCSHFHQVEGDRNVGKMSPLVR 98 (199)
Q Consensus 73 ~~il~~nn~~Die~D~~~Gk~Tlav~ 98 (199)
.++-++|-+||+.+|.+.||.-+|.-
T Consensus 145 ~AlQltniLRDl~eD~~~gR~YLP~~ 170 (266)
T TIGR03464 145 TALQLINFWQDVGVDYRKGRVYLPRD 170 (266)
T ss_pred HHHHHHHHHHhhHHHHhcCCccCCHH
Confidence 46678999999999999999988743
No 112
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=22.64 E-value=37 Score=28.73 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCChHhhHhcCCccccc
Q 029099 72 TSLILFCSHFHQVEGDRNVGKMSPLV 97 (199)
Q Consensus 72 ~~~il~~nn~~Die~D~~~Gk~Tlav 97 (199)
-.+.-++|-+||+.+|.+.||.-+|-
T Consensus 143 G~AlqltnilRdv~eD~~~gR~ylP~ 168 (266)
T TIGR03465 143 GRALQLTNILRDVGEDARRGRIYLPA 168 (266)
T ss_pred HHHHHHHHHHHHhHHHHhCCCeecCH
Confidence 33566799999999999999998885
No 113
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=22.57 E-value=3.2e+02 Score=22.44 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHH
Q 029099 63 SASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGS 105 (199)
Q Consensus 63 ~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~ 105 (199)
+-|+|.+.+..-...-.|+|+. +|...|-.+.--.+|++.+.
T Consensus 15 lGSip~~~~i~k~~~g~DiR~~-GSgN~GatNv~R~~G~k~gi 56 (196)
T TIGR00023 15 IGSIPFAYLVGKILKGIDIREH-GSGNPGATNVLRTLGVKAAL 56 (196)
T ss_pred HHhhHHHHHHHHHhCCCCchhc-CCCCccHHHHHHHHChHHHH
Confidence 4577888888877767799988 77777777777777776654
No 114
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.54 E-value=37 Score=24.91 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.3
Q ss_pred ChHhhHhcCCccccccc
Q 029099 83 QVEGDRNVGKMSPLVRL 99 (199)
Q Consensus 83 Die~D~~~Gk~Tlav~l 99 (199)
-.|.|..+|++|+.+|=
T Consensus 11 rfe~dilagrKTITIRD 27 (106)
T COG3097 11 RFEADILAGRKTITIRD 27 (106)
T ss_pred hccHHHhCCCceEEEec
Confidence 35889999999999873
No 115
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=22.43 E-value=2.1e+02 Score=23.28 Aligned_cols=78 Identities=10% Similarity=-0.020 Sum_probs=46.0
Q ss_pred HHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHHHH---HHHHHHhccchHHHHHHHHHHHHHHHH-HHHH
Q 029099 74 LILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSL---LFAIGLSRALPLSCIFLCAMTSPIGKL-VVSY 149 (199)
Q Consensus 74 ~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~---~~~~~~~g~~p~~~~ll~ll~lP~a~~-~~~~ 149 (199)
+-+-.||++-.+.|.+...-|.-=..-+.....++..+..+.-+. ++.....-...+|++.+++++ |+|=. -+|+
T Consensus 51 ~yf~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLs-PlAG~~Yw~k 129 (173)
T PF12046_consen 51 AYFEQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLS-PLAGIFYWQK 129 (173)
T ss_pred HHHHhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHh-hhhhhhhhhc
Confidence 334689999999999988888877777777666665544332222 222233322334454566555 88843 3344
Q ss_pred HHh
Q 029099 150 VEE 152 (199)
Q Consensus 150 ~~~ 152 (199)
-.|
T Consensus 130 A~R 132 (173)
T PF12046_consen 130 AGR 132 (173)
T ss_pred CCC
Confidence 433
No 116
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=21.69 E-value=4.6e+02 Score=21.53 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=41.0
Q ss_pred ccccccchHHHHHHhHhHHHHHHHHHHhcCccccccccchHHH-HHHHHHHHHHHHHHHHhcCCCC--hHhhHhcCCccc
Q 029099 19 RLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATV-LSASLLVGLTTSLILFCSHFHQ--VEGDRNVGKMSP 95 (199)
Q Consensus 19 ~l~y~glGe~~~~~~~G~l~~~g~y~~~~~~~~~~~~~~~~~~-l~~slp~~l~~~~il~~nn~~D--ie~D~~~Gk~Tl 95 (199)
++..|.-+++...+.|....+....+....+.+.. ....... |+..+..+....+-.+.+|.+| .|.-+-++...-
T Consensus 10 ~le~r~~~~~~~~~lf~l~~i~if~~al~~~~~~l-~~~~~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~ 88 (215)
T PF03379_consen 10 RLEFRSKEGLLSMLLFFLLVIVIFSFALGPDPDLL-ARVAPGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRS 88 (215)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHhhcCCchhHH-HHHhHHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHH
Confidence 44455555666666666666555555533221100 0111122 2222233333344445444444 233333443444
Q ss_pred ccccChhhHHHHHHHH
Q 029099 96 LVRLGTERGSVVVKWA 111 (199)
Q Consensus 96 av~lG~~~a~~l~~~l 111 (199)
++.+||--+.++....
T Consensus 89 ~i~l~K~l~~~~~~~~ 104 (215)
T PF03379_consen 89 AIFLGKLLANWLLLFL 104 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667776666655443
No 117
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.55 E-value=3.7e+02 Score=21.66 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=4.3
Q ss_pred HhhHhcCCc
Q 029099 85 EGDRNVGKM 93 (199)
Q Consensus 85 e~D~~~Gk~ 93 (199)
++|++.++|
T Consensus 30 ~~~~~~~~~ 38 (211)
T PF02683_consen 30 ASSRRKGKR 38 (211)
T ss_pred cccchhhhH
Confidence 445555533
No 118
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=21.11 E-value=2.4e+02 Score=18.06 Aligned_cols=27 Identities=15% Similarity=-0.015 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029099 57 ITATVLSASLLVGLTTSLILFCSHFHQ 83 (199)
Q Consensus 57 ~~~~~l~~slp~~l~~~~il~~nn~~D 83 (199)
.................++.+.++.||
T Consensus 27 l~~KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 27 LSEKGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 345566666667777888899999999
No 119
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=20.75 E-value=6e+02 Score=22.52 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=32.6
Q ss_pred chHHHHHHHHH-HHHHHHHHHHhcCCCChH--hh----HhcCCcccccccChhhHHHHHHH
Q 029099 57 ITATVLSASLL-VGLTTSLILFCSHFHQVE--GD----RNVGKMSPLVRLGTERGSVVVKW 110 (199)
Q Consensus 57 ~~~~~l~~slp-~~l~~~~il~~nn~~Die--~D----~~~Gk~Tlav~lG~~~a~~l~~~ 110 (199)
+.+...++++. ..++...+=.+||.-|.+ .| .+.+...+.++=+.+.+..+-..
T Consensus 41 f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~ 101 (303)
T COG1575 41 FNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLA 101 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHH
Confidence 44554444443 444455555899998854 23 46667777777777776655433
Done!