Query 029099
Match_columns 199
No_of_seqs 135 out of 1131
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kra_B Geranyl diphosphate syn 39.5 1.1E+02 0.0038 25.0 7.8 56 61-116 62-117 (274)
2 3m0g_A Farnesyl diphosphate sy 34.6 15 0.00051 30.8 1.6 36 77-112 214-260 (297)
3 3p8l_A Geranyltranstransferase 21.7 28 0.00095 29.3 1.0 28 82-109 240-267 (302)
4 3lom_A Geranyltranstransferase 21.6 36 0.0012 28.7 1.7 31 82-112 244-274 (313)
5 3lsn_A Geranyltranstransferase 21.1 29 0.001 29.1 1.0 42 74-115 218-270 (304)
6 4hd1_A Squalene synthase HPNC; 21.0 28 0.00096 28.8 0.8 25 73-97 163-187 (294)
7 3qkc_B Geranyl diphosphate syn 20.6 3.4E+02 0.012 21.9 7.9 54 61-116 67-120 (273)
8 3ts7_A Geranyltranstransferase 20.5 32 0.0011 29.3 1.1 40 74-113 224-274 (324)
9 3p8r_A Geranyltranstransferase 19.8 34 0.0012 28.6 1.2 37 76-112 226-273 (302)
10 3pde_A Farnesyl-diphosphate sy 19.5 61 0.0021 27.2 2.7 42 75-116 221-273 (309)
No 1
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=39.46 E-value=1.1e+02 Score=25.04 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y 116 (199)
..-++..+=++=++-+.-+|+++.|+|.+-|+-|.=.++|++.|...=-.++..++
T Consensus 62 ~~~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 62 AMAAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp GHHHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 34456666777778888999995555667999999999999876544444444343
No 2
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=34.58 E-value=15 Score=30.84 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhcCCCChHh-----------hHhcCCcccccccChhhHHHHHHHHH
Q 029099 77 FCSHFHQVEG-----------DRNVGKMSPLVRLGTERGSVVVKWAV 112 (199)
Q Consensus 77 ~~nn~~Die~-----------D~~~Gk~Tlav~lG~~~a~~l~~~l~ 112 (199)
..+|+-|+.+ |.+.||.|+|+.+|.+.++....-..
T Consensus 214 I~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 260 (297)
T 3m0g_A 214 IADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLV 260 (297)
T ss_dssp HHTTCC---------------------CCHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
No 3
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=21.69 E-value=28 Score=29.26 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHH
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVK 109 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~ 109 (199)
+...+|.+.||.|+|+.+|.+.++....
T Consensus 240 K~~g~Dl~egK~T~p~l~~l~~a~~~~~ 267 (302)
T 3p8l_A 240 KKVGRDEALNKSTYPALLGIAGAKDALT 267 (302)
T ss_dssp -----------CCHHHHHCHHHHHHHHH
T ss_pred CChhhHHhcCCCcHHHHHHHHHHHHHHH
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=21.62 E-value=36 Score=28.69 Aligned_cols=31 Identities=6% Similarity=-0.065 Sum_probs=0.0
Q ss_pred CChHhhHhcCCcccccccChhhHHHHHHHHH
Q 029099 82 HQVEGDRNVGKMSPLVRLGTERGSVVVKWAV 112 (199)
Q Consensus 82 ~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~ 112 (199)
+..-+|.+.||.|+|+.+|.+.++....-..
T Consensus 244 K~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~ 274 (313)
T 3lom_A 244 KGRSSDQANQKTTFATLFNKQQLEEEIAVHY 274 (313)
T ss_dssp ----------CCCHHHHSCHHHHHHHHHHHH
T ss_pred CCCcchhhcCCccHHHHHHHHHHHHHHHHHH
No 5
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=21.10 E-value=29 Score=29.14 Aligned_cols=42 Identities=14% Similarity=-0.078 Sum_probs=26.3
Q ss_pred HHHHhcCCCChHh-----------hHhcCCcccccccChhhHHHHHHHHHHHH
Q 029099 74 LILFCSHFHQVEG-----------DRNVGKMSPLVRLGTERGSVVVKWAVMIL 115 (199)
Q Consensus 74 ~il~~nn~~Die~-----------D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~ 115 (199)
+.-..+|+-|+.+ |.+.||.|+|+.+|.+.++....-..--+
T Consensus 218 aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 218 AFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777754 67889999999999999988776555433
No 6
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=20.95 E-value=28 Score=28.84 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHhcCCCChHhhHhcCCccccc
Q 029099 73 SLILFCSHFHQVEGDRNVGKMSPLV 97 (199)
Q Consensus 73 ~~il~~nn~~Die~D~~~Gk~Tlav 97 (199)
.++-++|-+||+.+|.+.||.-+|.
T Consensus 163 ~AlQltNilRDv~eD~~~gR~YlP~ 187 (294)
T 4hd1_A 163 TALQVANHMQDIDRDLALGRIYVPR 187 (294)
T ss_dssp HHHHHHHHHHTHHHHHHTTCBCSCH
T ss_pred HHHHHHHHHHhchhhhccCceeCCH
Confidence 3567899999999999999999985
No 7
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=20.59 E-value=3.4e+02 Score=21.95 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y 116 (199)
..-++..+=++=++-+.-+|++|.+. +.||-|.=.++|+..|...=-.++..++
T Consensus 67 ~~~~A~aiEliH~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 120 (273)
T 3qkc_B 67 AMAAAAAVHLMHVAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGL 120 (273)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 34456667777788888999999865 5689999999999876654444444443
No 8
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=20.51 E-value=32 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.005 Sum_probs=25.1
Q ss_pred HHHHhcCCCChH-----------hhHhcCCcccccccChhhHHHHHHHHHH
Q 029099 74 LILFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVVKWAVM 113 (199)
Q Consensus 74 ~il~~nn~~Die-----------~D~~~Gk~Tlav~lG~~~a~~l~~~l~~ 113 (199)
+.-..+|+-|+. +|.+.||.|+|+.+|.+.++....-..-
T Consensus 224 AFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~ 274 (324)
T 3ts7_A 224 AFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHE 274 (324)
T ss_dssp HHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 334566776664 4778899999999999999877765544
No 9
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=19.76 E-value=34 Score=28.63 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=22.0
Q ss_pred HHhcCCCChH-----------hhHhcCCcccccccChhhHHHHHHHHH
Q 029099 76 LFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVVKWAV 112 (199)
Q Consensus 76 l~~nn~~Die-----------~D~~~Gk~Tlav~lG~~~a~~l~~~l~ 112 (199)
-..+|+-|+. +|.+.||.|+|+.+|.+.++....-..
T Consensus 226 QI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 273 (302)
T 3p8r_A 226 QVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLL 273 (302)
T ss_dssp HHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 3456666653 477889999999999888877665443
No 10
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=19.54 E-value=61 Score=27.24 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=30.1
Q ss_pred HHHhcCCCChH-----------hhHhcCCcccccccChhhHHHHHHHHHHHHH
Q 029099 75 ILFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 75 il~~nn~~Die-----------~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y 116 (199)
.-..+|+-|+. +|.+.||.|+|+.+|.+++.....-+.--+.
T Consensus 221 FQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~ 273 (309)
T 3pde_A 221 FQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQ 273 (309)
T ss_dssp HHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHH
Confidence 33567777763 5788999999999999999887765554443
Done!