Query 029099
Match_columns 199
No_of_seqs 135 out of 1131
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 12:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029099.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029099hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 49.4 27 0.002 26.9 7.6 59 60-118 65-124 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 34.7 34 0.0025 26.2 5.9 57 61-117 63-120 (290)
3 d1te7a_ b.122.1.7 (A:) Hypothe 24.7 11 0.00078 25.2 0.9 15 84-98 12-26 (103)
4 d1iwga8 f.35.1.1 (A:513-566,A: 22.4 78 0.0057 22.9 5.8 15 6-20 37-51 (222)
5 d1rtra_ a.128.1.1 (A:) Farnesy 21.3 9.4 0.00069 29.6 0.0 33 74-106 212-255 (290)
6 d1ezfa_ a.128.1.2 (A:) Squalen 20.8 12 0.00088 29.7 0.6 24 74-97 173-196 (333)
7 d1rqja_ a.128.1.1 (A:) Farnesy 15.7 23 0.0017 27.3 1.2 34 75-108 219-263 (299)
8 d1v4ea_ a.128.1.1 (A:) Octopre 14.7 1E+02 0.0074 23.1 4.9 56 60-116 54-109 (280)
9 d1kfta_ a.60.2.3 (A:) Excinucl 10.0 43 0.0031 19.1 0.9 36 76-111 17-54 (56)
10 d2a1jb1 a.60.2.5 (B:219-296) D 9.7 48 0.0035 20.1 1.1 38 74-111 32-71 (78)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=49.36 E-value=27 Score=26.86 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHh-hHhcCCcccccccChhhHHHHHHHHHHHHHHH
Q 029099 60 TVLSASLLVGLTTSLILFCSHFHQVEG-DRNVGKMSPLVRLGTERGSVVVKWAVMILYSL 118 (199)
Q Consensus 60 ~~l~~slp~~l~~~~il~~nn~~Die~-D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~~ 118 (199)
...-++..+=++=++.+.-+|+.|.+. |.+.|+.|.-.+.|.+.|...=-.++..++-.
T Consensus 65 ~~~~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 445556677788888899999999887 58999999999999998866655555555444
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=34.73 E-value=34 Score=26.15 Aligned_cols=57 Identities=9% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHhh-HhcCCcccccccChhhHHHHHHHHHHHHHH
Q 029099 61 VLSASLLVGLTTSLILFCSHFHQVEGD-RNVGKMSPLVRLGTERGSVVVKWAVMILYS 117 (199)
Q Consensus 61 ~l~~slp~~l~~~~il~~nn~~Die~D-~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y~ 117 (199)
..-++..+=++=++.+.-+|+.|+++| .+.|+.|.-.+.|.+.|...=-.+...++-
T Consensus 63 ~~~~A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 63 GMKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp GHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 344566677888888999999998775 588999999999998876654444444443
No 3
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=24.74 E-value=11 Score=25.23 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.3
Q ss_pred hHhhHhcCCcccccc
Q 029099 84 VEGDRNVGKMSPLVR 98 (199)
Q Consensus 84 ie~D~~~Gk~Tlav~ 98 (199)
.|.|..+||+|+.+|
T Consensus 12 fe~dIlsGkKTITIR 26 (103)
T d1te7a_ 12 FQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHTCCCEEEEE
T ss_pred hhHHHhcCCceEEec
Confidence 588999999999886
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=22.36 E-value=78 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=7.5
Q ss_pred HHHHhhccCCCCccc
Q 029099 6 AVICGYIYQCPPFRL 20 (199)
Q Consensus 6 ~~~~~~~YS~~P~~l 20 (199)
....++.|+.-|-.+
T Consensus 37 ~~g~~~~f~~lp~~f 51 (222)
T d1iwga8 37 VVGMAYLFVRLPSSF 51 (222)
T ss_dssp HHHHHHHHHSSCBCS
T ss_pred hhhheeeeccCcHHH
Confidence 334556666554333
No 5
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.26 E-value=9.4 Score=29.60 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=18.9
Q ss_pred HHHHhcCCCChH-----------hhHhcCCcccccccChhhHHH
Q 029099 74 LILFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSV 106 (199)
Q Consensus 74 ~il~~nn~~Die-----------~D~~~Gk~Tlav~lG~~~a~~ 106 (199)
+.-..+|+-|+. +|.+.||.|+|+.+|.+.+..
T Consensus 212 aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 212 MFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 334677777764 577889999999999887643
No 6
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.82 E-value=12 Score=29.72 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=21.1
Q ss_pred HHHHhcCCCChHhhHhcCCccccc
Q 029099 74 LILFCSHFHQVEGDRNVGKMSPLV 97 (199)
Q Consensus 74 ~il~~nn~~Die~D~~~Gk~Tlav 97 (199)
+.-++|-+||+.+|.+.||.-+|.
T Consensus 173 AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 173 FLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHhhHHHHhCCcEECCH
Confidence 556788999999999999999985
No 7
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=15.68 E-value=23 Score=27.30 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHhcCCCChH-----------hhHhcCCcccccccChhhHHHHH
Q 029099 75 ILFCSHFHQVE-----------GDRNVGKMSPLVRLGTERGSVVV 108 (199)
Q Consensus 75 il~~nn~~Die-----------~D~~~Gk~Tlav~lG~~~a~~l~ 108 (199)
.-+.+|+-|+. +|.+.||.|+|+.+|.+.+....
T Consensus 219 FQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 219 FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 34566666654 47788999999999998876543
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=14.73 E-value=1e+02 Score=23.08 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHhhHhcCCcccccccChhhHHHHHHHHHHHHH
Q 029099 60 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 116 (199)
Q Consensus 60 ~~l~~slp~~l~~~~il~~nn~~Die~D~~~Gk~Tlav~lG~~~a~~l~~~l~~~~y 116 (199)
..+-.+..+=++=++.+.-.|+-| ++|.+.|+.|.=...|...+...--.++..++
T Consensus 54 ~~~~~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 54 DAISSLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhh
Confidence 344444455666667777788877 56788999999999999888665544444443
No 9
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.99 E-value=43 Score=19.15 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=27.8
Q ss_pred HHhcCCCChHhhHhcCCcccccc--cChhhHHHHHHHH
Q 029099 76 LFCSHFHQVEGDRNVGKMSPLVR--LGTERGSVVVKWA 111 (199)
Q Consensus 76 l~~nn~~Die~D~~~Gk~Tlav~--lG~~~a~~l~~~l 111 (199)
.+.+++.+++.=+++-...|.-. +|++.|..++..+
T Consensus 17 ~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l 54 (56)
T d1kfta_ 17 MLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 54 (56)
T ss_dssp HHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHH
Confidence 35667888888888888888777 8999998888653
No 10
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.66 E-value=48 Score=20.12 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=30.4
Q ss_pred HHHHhcCCCChHhhHhcCCcccccc--cChhhHHHHHHHH
Q 029099 74 LILFCSHFHQVEGDRNVGKMSPLVR--LGTERGSVVVKWA 111 (199)
Q Consensus 74 ~il~~nn~~Die~D~~~Gk~Tlav~--lG~~~a~~l~~~l 111 (199)
+-.+++++.+++.=+++....+.-. +|++.+..++..+
T Consensus 32 a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 32 SQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp HHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHH
Confidence 4456777888888888888888888 9999999988754
Done!