BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029100
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
Length = 244
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 115/172 (66%), Gaps = 3/172 (1%)
Query: 30 QDELKKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
D LKKI AYKAV E+V+S M +GLGTGST + ++RI LL+ GKL ++V IPTS T
Sbjct: 9 MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTE 68
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
+A LGIPL+ L+ + +D+ IDG DE+D +NL+KGRGG+L+REK+V + ++I
Sbjct: 69 LKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIG 128
Query: 149 DESKLVPH-LGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE 199
DESKL + LG +G A+P+E++ + ++ + L ++ GC K+R E
Sbjct: 129 DESKLCTNGLGMTG-AVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGE 179
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Ribose-5-Phosphate
Length = 227
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 7/169 (4%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ KK AA+ A+ +V+ GMV+GLGTGSTA++AV + LR+G+L +VG+PTS+ T E
Sbjct: 6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A GIPL DL VDLAIDGADE+ P + L+KG GG+LLREK+VE K+F+VI D
Sbjct: 66 AKREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE 199
+K VP LG +PVE+VP+ ++ T K + DL G +LR G E
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRMDGDE 167
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+ +E+KKIAA +A++F+E MV+GLGTGST + + +GE L++G++++IVG+PTS +
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
A+ IP++ LD +D+A+DGADEVDP +NL+KGRG +L EK++E F+V+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRL 180
VDE KLV +L + +P+EV+P WK + L
Sbjct: 121 VDERKLVDYL-CQKMPVPIEVIPQAWKAIIEEL 152
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-phosphate Isomerase
pdb|1UJ6|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Arabinose-5-Phosphate
Length = 227
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 112/169 (66%), Gaps = 7/169 (4%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ KK AA+ A+ +V+ G V+GLGTGSTA++AV + LR+G+L +VG+PTS+ T E
Sbjct: 6 ESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A GIPL DL VDLAIDGADE+ P + L+KG GG+LLREK+VE K+F+VI D
Sbjct: 66 AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEFIVIADH 124
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE 199
+K VP LG +PVE+VP+ ++ T K + DL G +LR G E
Sbjct: 125 TKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRXDGDE 167
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
pdb|3L7O|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
Length = 225
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 105/164 (64%), Gaps = 7/164 (4%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ELKKIA +A ++VE GM++GLGTGSTA + V+ +G +++ L ++G+ TS +T Q
Sbjct: 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQ 60
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A +LGIPL +D VD+ +DGADEVDP N +KG GG+LL EK+V K ++ +VDE
Sbjct: 61 AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 151 SKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
SK+V LG +PVEVV Y A+RL FE G R
Sbjct: 121 SKMVDTLG--AFRLPVEVVQYG----AERLFREFEKKGYKPSFR 158
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
pdb|4GMK|B Chain B, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
Length = 228
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
QDELK++ KAVE+++ GM++GLGTGST K+ VD +G+ + + L +IVG+ TS +T
Sbjct: 3 NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTA 61
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
EQA SLGI + D+D +DL IDGADE+ +KG G +LL EK+V K + IV
Sbjct: 62 EQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIV 121
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
DESK+V LG +PVEV+PY KR FE+ G + R
Sbjct: 122 DESKMVDDLG--QFPLPVEVIPYGSGTVFKR----FEEKGLNPEFR 161
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
+LKK+AA KA+EFVE M LG+G+GST + +GE + G + + TS+ + +
Sbjct: 26 QLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANG--LRVTCVATSQYSEQLC 83
Query: 92 VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
G+P+S L+ P +DL IDGADE+ P M L+KG GG+LL EK+V A + VI DE+
Sbjct: 84 HKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADET 143
Query: 152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTG 197
K+V LG A+P+EV P+ T ++ ++ G + LR G
Sbjct: 144 KMVKTLG--AFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNG 189
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|B Chain B, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|C Chain C, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|D Chain D, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
Length = 226
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
++ ++LK A +AV+ V+ GMV+GLGTGSTA + +G +R+ +LT + GIPTS +
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELT-VFGIPTSFEA 59
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEV-DPFMNLVKGRGGSLLREKMVEGACKKFVV 146
A+ IPL LD Y VD+A DGADEV + + L+KG GG +EK+V+ +FVV
Sbjct: 60 KMLAMQYEIPLVTLDEYD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 147 IVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL 183
+VDESKLV L G +PVEV+P ++ + L ++
Sbjct: 119 LVDESKLVKKL-GEKFPIPVEVIPSAYRVVIRALSEM 154
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENQ|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENV|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENV|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
Length = 235
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+TQDE+KK A + A+++VE G ++G+GTGST H +D +G + + K + +S +
Sbjct: 18 MTQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEEIKGA----VSSSVAS 73
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E+ +LGI + D + +D+ +DGADE++ ++KG G +L REK+V KF+ I
Sbjct: 74 TEKLEALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICI 133
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186
VD +K V LG +PVEV+P + A++L L D
Sbjct: 134 VDGTKAVDVLG--TFPLPVEVIPMARSYVARQLVKLGGD 170
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268.
pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268
Length = 219
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 6/156 (3%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+TQDELKK + A+++V+ G ++G+GTGSTA H +D +G +G++ V +S +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT--XKGQIEGAV--SSSDAS 56
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E+ SLGI + DL+ + + +DGADE++ +KG G +L REK++ +KF+ I
Sbjct: 57 TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL 183
D SK V LG +PVEV+P A++L L
Sbjct: 117 ADASKQVDILG--KFPLPVEVIPXARSAVARQLVKL 150
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1O8B|A Chain A, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate.
pdb|1O8B|B Chain B, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate
Length = 219
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
TQDELKK + A+++V+ G ++G+GTGSTA H +D +G +G++ V +S +
Sbjct: 2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT--XKGQIEGAV--SSSDAST 57
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
E+ SLGI + DL+ + + +DGADE++ +KG G +L REK++ +KF+ I
Sbjct: 58 EKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIA 117
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL 183
D SK V LG +PVEV+P A++L L
Sbjct: 118 DASKQVDILG--KFPLPVEVIPXARSAVARQLVKL 150
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|B Chain B, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|C Chain C, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|D Chain D, Crystal Structure Of Ribose-5-Isomerase A
pdb|4IO1|A Chain A, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
pdb|4IO1|B Chain B, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
Length = 224
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
QDELKK+AA +A + + + + LG+GTGST ++ + + + K+ +V +S+ +
Sbjct: 8 NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEEL--VNYRDKIKTVVS--SSEDST 63
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
+ +LG + DL+ +DL IDGADE + L+KG G +L REK+ A KKF+ I+
Sbjct: 64 RKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICII 123
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL 183
DESK V LG +P+EV+P + A+++ L
Sbjct: 124 DESKKVNTLG--NFPLPIEVIPMARSYIARQIVKL 156
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 9/152 (5%)
Query: 31 DELKKIAAYKAVE---FVESGMVLGLGTGSTAKHAVDRIGELLRQGKL----TNIVGIPT 83
++ K+ AAY+AV+ + ++G+G+GST + +RIG+ L K + + IPT
Sbjct: 19 EDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPT 78
Query: 84 SKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKK 143
++ + + L ++ YP +D+A DGADEVD + L+KG G L +EK+V + K
Sbjct: 79 GFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKT 138
Query: 144 FVVIVDESKLVP-HLGGSGL-AMPVEVVPYCW 173
F+V+ D K P HLG + +P+E+VP +
Sbjct: 139 FIVVADSRKKSPKHLGKNWRQGVPIEIVPSSY 170
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+ Q E+KK+AA A+++V++ ++G+G+GST ++ +G + + K+ V SK++
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVA--ASKES 56
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E GI + + + +D+ +DGADE++P ++KG G +L REK+V KKF+ I
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL 183
VD SK V L GS +PVEV+P ++L L
Sbjct: 117 VDSSKQVDVL-GSTFPLPVEVIPMARSQVGRKLAAL 151
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 26 VILTQDELKKIAAYKAVEFVE----SGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGI 81
+++TQDELK++ A +V G V+G+GTGSTA +D + + + + +
Sbjct: 7 LLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKDRYRGA----V 62
Query: 82 PTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGAC 141
+S T E+ S GI + DL+ + + +DGADE+D ++KG GG+L REK+V
Sbjct: 63 SSSVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVA 122
Query: 142 KKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL 183
+ FV I D SK V LG +PVEVVP +RL L
Sbjct: 123 ETFVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRLAAL 162
>pdb|4HE8|H Chain H, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HE8|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|4HEA|H Chain H, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|Q Chain Q, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 365
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 143 KFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKF 175
+++ + S L+P L G MPV VPY W F
Sbjct: 248 EYIHFITASALIPTLFLGGWTMPVLEVPYLWMF 280
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 42 VEFVESGMVLGL--GTGSTAKHAVDRIGELLRQG 73
V+FV + +VL TGS +H +D+ LLRQG
Sbjct: 844 VKFVPNILVLDYLYATGSKEQHLIDKATNLLRQG 877
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRI--GELLRQGKL 75
A K V + G V GLG G+ A A+ R+ GE++R G++
Sbjct: 243 ALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQM 282
>pdb|2L42|A Chain A, The Solution Structure Of Rap1 Brct Domain From
Saccharomyces Cerevisiae
Length = 106
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 95 GIPLSDLDSYPVVDL-AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVV 146
G PLS++ Y D A D +++D L++ GG +L K E F+V
Sbjct: 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIV 61
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 105 PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVD 149
PV ++ D D F N+V+ RGG L+++ A V IVD
Sbjct: 242 PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVD 286
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 45 VESGMVL---GLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK--THEQAVSLGIPLS 99
+E GM L G G GST +HAV N++G+ S+ H++A+
Sbjct: 70 LEPGMTLLDIGCGWGSTMRHAVAEYD--------VNVIGLTLSENQYAHDKAM-----FD 116
Query: 100 DLDSYPVVDLAIDGADEVD 118
++DS ++ I G +E D
Sbjct: 117 EVDSPRRKEVRIQGWEEFD 135
>pdb|1A8P|A Chain A, Ferredoxin Reductase From Azotobacter Vinelandii
Length = 258
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 61 HAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIP 97
H R+ +L+R GKL +G+P ++A+ G P
Sbjct: 186 HNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSP 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,386,219
Number of Sequences: 62578
Number of extensions: 217356
Number of successful extensions: 559
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 30
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)