Query 029100
Match_columns 199
No_of_seqs 118 out of 1045
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:01:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lk5_A D-ribose-5-phosphate is 100.0 8.2E-38 2.8E-42 264.3 16.5 163 28-195 1-163 (229)
2 1m0s_A Ribose-5-phosphate isom 100.0 6.6E-38 2.3E-42 263.3 14.9 158 28-195 1-159 (219)
3 2pjm_A Ribose-5-phosphate isom 100.0 5.5E-37 1.9E-41 258.7 16.6 162 28-196 1-163 (226)
4 3l7o_A Ribose-5-phosphate isom 100.0 8.3E-37 2.8E-41 257.4 14.2 159 31-196 2-160 (225)
5 3hhe_A Ribose-5-phosphate isom 100.0 2.7E-36 9.4E-41 258.0 17.3 171 22-196 16-188 (255)
6 2f8m_A Ribose 5-phosphate isom 100.0 1.4E-36 4.8E-41 258.8 15.4 166 29-195 8-175 (244)
7 1o8b_A Ribose 5-phosphate isom 100.0 9.3E-38 3.2E-42 262.4 7.0 156 29-195 2-158 (219)
8 1uj6_A Ribose 5-phosphate isom 100.0 2.4E-36 8.2E-41 255.0 15.3 160 29-195 4-163 (227)
9 3kwm_A Ribose-5-phosphate isom 100.0 1.8E-36 6.2E-41 255.2 14.3 158 27-195 6-164 (224)
10 1xtz_A Ribose-5-phosphate isom 100.0 4.2E-36 1.4E-40 258.5 14.2 177 15-195 3-190 (264)
11 3uw1_A Ribose-5-phosphate isom 100.0 1.8E-34 6E-39 245.0 13.9 158 28-196 9-171 (239)
12 4gmk_A Ribose-5-phosphate isom 100.0 1.6E-31 5.4E-36 225.2 15.5 161 29-196 3-163 (228)
13 3ixq_A Ribose-5-phosphate isom 100.0 2.1E-30 7.3E-35 218.1 16.6 162 28-196 1-163 (226)
14 1vb5_A Translation initiation 99.3 1.1E-11 3.7E-16 106.8 12.6 146 30-183 92-266 (276)
15 2w48_A Sorbitol operon regulat 98.3 1.1E-06 3.8E-11 76.0 7.3 50 31-83 89-142 (315)
16 2o0m_A Transcriptional regulat 98.2 8.1E-07 2.8E-11 77.9 4.8 89 28-118 118-247 (345)
17 3ecs_A Translation initiation 97.9 0.0001 3.5E-09 64.5 11.5 129 33-169 107-251 (315)
18 3d3u_A 4-hydroxybutyrate COA-t 97.9 3.4E-05 1.2E-09 70.0 8.7 52 30-87 192-243 (439)
19 1poi_B Glutaconate coenzyme A- 97.8 4.4E-05 1.5E-09 65.0 7.3 114 34-158 8-161 (260)
20 3a11_A Translation initiation 97.6 0.00095 3.3E-08 58.8 12.8 132 32-170 126-271 (338)
21 3rrl_B Succinyl-COA:3-ketoacid 97.4 1.3E-05 4.3E-10 66.3 -1.2 108 34-153 2-144 (207)
22 1t9k_A Probable methylthioribo 97.4 0.001 3.4E-08 58.9 10.7 132 32-170 133-289 (347)
23 2yvk_A Methylthioribose-1-phos 97.3 0.0008 2.7E-08 60.1 9.2 132 32-170 158-314 (374)
24 1t5o_A EIF2BD, translation ini 97.3 0.0023 8E-08 56.6 12.0 130 32-170 131-285 (351)
25 2a0u_A Initiation factor 2B; S 97.1 0.0028 9.4E-08 56.8 9.8 132 32-170 154-318 (383)
26 1k6d_A Acetate COA-transferase 97.0 0.0037 1.3E-07 51.5 9.4 44 38-85 8-54 (220)
27 3rrl_A Succinyl-COA:3-ketoacid 96.9 0.0039 1.3E-07 52.2 9.0 44 38-85 11-57 (235)
28 3cdk_A Succinyl-COA:3-ketoacid 96.8 0.002 6.9E-08 54.0 6.0 44 38-85 11-57 (241)
29 3d3u_A 4-hydroxybutyrate COA-t 96.6 0.0017 5.7E-08 58.8 4.3 115 34-152 10-160 (439)
30 3qli_A Coenzyme A transferase; 95.6 0.042 1.4E-06 50.2 8.5 119 31-151 20-183 (455)
31 2g39_A Acetyl-COA hydrolase; c 95.1 0.051 1.7E-06 50.0 7.6 111 38-151 18-167 (497)
32 4eu9_A Succinyl-COA:acetate co 95.0 0.22 7.5E-06 45.8 11.6 111 38-151 17-171 (514)
33 2oas_A ATOA, 4-hydroxybutyrate 94.7 0.063 2.1E-06 48.5 6.9 109 38-150 9-152 (436)
34 3nze_A Putative transcriptiona 94.6 0.051 1.7E-06 45.8 5.8 40 29-68 34-77 (267)
35 3gk7_A 4-hydroxybutyrate COA-t 94.4 0.058 2E-06 49.1 6.0 110 38-151 14-158 (448)
36 2nvv_A Acetyl-COA hydrolase/tr 94.2 0.071 2.4E-06 49.2 6.3 111 38-151 8-162 (506)
37 3eh7_A 4-hydroxybutyrate COA-t 94.0 0.063 2.1E-06 48.6 5.5 111 37-151 17-162 (434)
38 3kv1_A Transcriptional repress 93.6 0.066 2.3E-06 45.1 4.6 40 30-69 34-77 (267)
39 2ahu_A Putative enzyme YDIF; C 93.6 0.19 6.4E-06 46.6 7.8 52 34-85 14-70 (531)
40 3efb_A Probable SOR-operon reg 93.5 0.086 2.9E-06 44.3 5.0 42 28-69 37-82 (266)
41 1w2w_B 5-methylthioribose-1-ph 93.1 0.12 4.3E-06 41.7 5.2 63 106-170 51-113 (191)
42 2gnp_A Transcriptional regulat 92.5 0.24 8.4E-06 41.4 6.4 36 33-68 39-78 (266)
43 2hj0_A Putative citrate lyase, 92.3 0.49 1.7E-05 43.7 8.6 109 38-151 52-210 (519)
44 2okg_A Central glycolytic gene 91.9 0.2 6.9E-06 41.7 5.1 37 32-68 37-77 (255)
45 1stz_A Heat-inducible transcri 91.7 0.017 5.8E-07 50.6 -1.9 48 31-91 99-147 (338)
46 2oas_A ATOA, 4-hydroxybutyrate 91.2 0.41 1.4E-05 43.2 6.8 39 31-69 187-225 (436)
47 2r5f_A Transcriptional regulat 88.8 0.4 1.4E-05 40.0 4.4 38 32-69 38-80 (264)
48 3qli_A Coenzyme A transferase; 86.3 1.8 6.2E-05 39.4 7.4 47 31-83 218-264 (455)
49 1poi_A Glutaconate coenzyme A- 86.0 0.71 2.4E-05 39.8 4.4 44 105-150 170-213 (317)
50 3k6m_A Succinyl-COA:3-ketoacid 85.3 0.62 2.1E-05 42.7 3.8 111 31-152 260-406 (481)
51 1xr4_A Putative citrate lyase 83.7 0.86 3E-05 41.9 4.1 111 38-150 49-206 (509)
52 3gk7_A 4-hydroxybutyrate COA-t 83.4 1.5 5.1E-05 39.8 5.4 40 30-69 191-230 (448)
53 3k6m_A Succinyl-COA:3-ketoacid 81.8 1.4 4.6E-05 40.4 4.6 43 38-84 7-52 (481)
54 3eh7_A 4-hydroxybutyrate COA-t 81.3 2.2 7.6E-05 38.4 5.7 40 30-69 195-234 (434)
55 2hj0_A Putative citrate lyase, 70.8 3.6 0.00012 37.9 4.2 38 32-69 251-294 (519)
56 2ahu_A Putative enzyme YDIF; C 64.8 4.5 0.00015 37.3 3.5 106 34-150 288-418 (531)
57 1fs5_A Glucosamine-6-phosphate 61.0 9.5 0.00032 31.2 4.5 34 48-81 34-69 (266)
58 1xr4_A Putative citrate lyase 59.0 7 0.00024 35.8 3.7 38 32-69 248-291 (509)
59 1ucr_A Protein DSVD; dissimila 57.9 1.5 5.1E-05 30.5 -0.8 28 34-61 36-63 (78)
60 2ri0_A Glucosamine-6-phosphate 54.3 12 0.0004 29.9 3.9 35 34-68 10-49 (234)
61 3fwz_A Inner membrane protein 52.3 45 0.0015 23.9 6.7 48 48-100 8-55 (140)
62 2g39_A Acetyl-COA hydrolase; c 51.9 18 0.00061 33.0 5.1 49 31-83 230-288 (497)
63 1ne7_A Glucosamine-6-phosphate 51.7 20 0.00067 29.9 5.1 20 49-68 35-54 (289)
64 4eu9_A Succinyl-COA:acetate co 51.1 38 0.0013 30.8 7.2 48 32-83 237-294 (514)
65 2nvv_A Acetyl-COA hydrolase/tr 49.0 22 0.00074 32.5 5.2 51 31-84 225-285 (506)
66 2bkx_A Glucosamine-6-phosphate 47.9 14 0.00047 29.6 3.4 34 35-68 10-49 (242)
67 1y89_A DEVB protein; structura 47.5 21 0.0007 28.9 4.4 36 33-68 13-50 (238)
68 3ix7_A Uncharacterized protein 42.3 71 0.0024 23.9 6.4 64 32-101 52-122 (134)
69 3c85_A Putative glutathione-re 37.9 1E+02 0.0035 22.8 6.9 50 46-99 38-87 (183)
70 3tx2_A Probable 6-phosphogluco 37.7 11 0.00039 31.0 1.3 23 46-68 38-60 (251)
71 3oc6_A 6-phosphogluconolactona 35.7 12 0.00041 30.7 1.2 23 46-68 38-60 (248)
72 3eb9_A 6-phosphogluconolactona 34.3 21 0.00071 29.6 2.5 21 47-67 36-56 (266)
73 1poi_A Glutaconate coenzyme A- 33.6 25 0.00087 29.9 2.9 43 38-84 6-52 (317)
74 2kmm_A Guanosine-3',5'-BIS(dip 26.6 55 0.0019 20.8 3.1 23 45-67 7-29 (73)
75 2v57_A TETR family transcripti 24.7 44 0.0015 24.3 2.6 39 23-67 5-43 (190)
76 3css_A 6-phosphogluconolactona 24.6 55 0.0019 26.9 3.4 21 48-68 38-58 (267)
77 1vl1_A 6PGL, 6-phosphogluconol 24.4 41 0.0014 27.2 2.5 21 48-68 46-66 (232)
78 3llv_A Exopolyphosphatase-rela 23.8 1.9E+02 0.0064 20.2 6.5 47 48-99 7-53 (141)
79 3hvz_A Uncharacterized protein 23.7 51 0.0017 22.3 2.5 25 44-68 11-35 (78)
80 3l9w_A Glutathione-regulated p 23.2 1.8E+02 0.0061 25.4 6.6 47 48-99 5-51 (413)
81 1kol_A Formaldehyde dehydrogen 21.0 2.3E+02 0.0077 23.9 6.7 64 45-115 183-263 (398)
No 1
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=8.2e-38 Score=264.31 Aligned_cols=163 Identities=44% Similarity=0.746 Sum_probs=144.7
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccc
Q 029100 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~ 107 (199)
+++.++|++||++|+++|+|||+||||+|||+++++++|.++.+...+.++|+||||+.++..+...|++++.+.+-+++
T Consensus 1 m~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~ 80 (229)
T 1lk5_A 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI 80 (229)
T ss_dssp CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccC
Confidence 35788999999999999999999999999999999999975421111125899999999999998889998888654599
Q ss_pred cEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhcc
Q 029100 108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187 (199)
Q Consensus 108 D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~ 187 (199)
|+||+||+||+.+++++.+.+++.+|++++.++|+++|+|+|||||++++|.. +|+|+||.|++|.+|.+.|.+|
T Consensus 81 D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~-~~lPvEV~p~~~~~v~~~l~~l---- 155 (229)
T 1lk5_A 81 DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQK-MPVPIEVIPQAWKAIIEELSIF---- 155 (229)
T ss_dssp EEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTSS-CCEEEEECGGGHHHHHHHGGGG----
T ss_pred CEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCCC-CCEEEEECcchHHHHHHHHHHc----
Confidence 99999999999988888888999999998887899999999999999989853 8999999999999999999997
Q ss_pred CCeeEEec
Q 029100 188 GCVAKLRT 195 (199)
Q Consensus 188 ~~~~~~r~ 195 (199)
|+.|+||.
T Consensus 156 g~~~~~R~ 163 (229)
T 1lk5_A 156 NAKAELRM 163 (229)
T ss_dssp TCEEEECB
T ss_pred CCCeEEee
Confidence 99999996
No 2
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=6.6e-38 Score=263.34 Aligned_cols=158 Identities=35% Similarity=0.617 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEE-ECCcHHHHHHHHhCCCceEecCCCcc
Q 029100 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPV 106 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltV-vTnSl~~a~~l~~~g~~v~~l~~~~~ 106 (199)
+++.++|++||++|+++|+|||+||||+|||+.+++++|.++. + ++|+ ||||+.++..+...|++++.+.+-++
T Consensus 1 m~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~la~~L~~~~--~---~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~ 75 (219)
T 1m0s_A 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIK--D---KIQGAVAASKESEELLRKQGIEVFNANDVSS 75 (219)
T ss_dssp CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTTG--G---GSCEEEESSHHHHHHHHHTTCCBCCGGGCSC
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhccC--C---CEEEEECChHHHHHHHHhCCCeEEEeCcccc
Confidence 4578899999999999999999999999999999999997541 0 4899 99999999999888999888765469
Q ss_pred ccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhc
Q 029100 107 VDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (199)
Q Consensus 107 ~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~ 186 (199)
+|++|+||+||+.+++++.+.+++.+|++++.++|+++|+|+|||||++++|.. +|+|+||.|++|.+|.+.|.+|
T Consensus 76 ~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~-~~lPvEV~p~~~~~v~~~l~~l--- 151 (219)
T 1m0s_A 76 LDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGST-FPLPVEVIPMARSQVGRKLAAL--- 151 (219)
T ss_dssp EEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTSS-SCEEEEECGGGHHHHHHHHHHT---
T ss_pred CCEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCCC-CCEEEEECcchHHHHHHHHHHc---
Confidence 999999999999987788888999999998887899999999999999989853 7999999999999999999997
Q ss_pred cCCeeEEec
Q 029100 187 CGCVAKLRT 195 (199)
Q Consensus 187 ~~~~~~~r~ 195 (199)
|+.|+||+
T Consensus 152 -g~~~~~R~ 159 (219)
T 1m0s_A 152 -GGSPEYRE 159 (219)
T ss_dssp -TCEEEECT
T ss_pred -CCCcEeeC
Confidence 99999996
No 3
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=5.5e-37 Score=258.72 Aligned_cols=162 Identities=43% Similarity=0.685 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccc
Q 029100 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~ 107 (199)
++++++|++||++|++||+||++||||+|||+.+++++|.++.+.+.+ ++++||||+.++..+.+.|+++..+.+ +.+
T Consensus 1 m~~~~~K~~iA~~A~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l-~itvVtnS~~~a~~l~~~gi~v~~l~~-~~i 78 (226)
T 2pjm_A 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDE-YDV 78 (226)
T ss_dssp -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTT-CCC
T ss_pred CChHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCC-cEEEEeCcHHHHHHHHhcCCeEEeecc-ccC
Confidence 467899999999999999999999999999999999999875322233 799999999999999999999998875 559
Q ss_pred cEEEEccCcccCC-CCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhc
Q 029100 108 DLAIDGADEVDPF-MNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (199)
Q Consensus 108 D~aFig~~gi~~~-~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~ 186 (199)
|++|+|||+||.+ ++++++.+++.+++++++++|+++|+++|+|||++++|.. +|+|+||.|++|.+|.+.|.+|
T Consensus 79 D~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~-~~lPvEV~p~a~~~v~~~l~~~--- 154 (226)
T 2pjm_A 79 DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEK-FPIPVEVIPSAYRVVIRALSEM--- 154 (226)
T ss_dssp SEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSS-SCEEEEECGGGHHHHHHHHHHT---
T ss_pred CEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCC-CCEEEEEehhHHHHHHHHHHHc---
Confidence 9999999999999 8999998999999999998999999999999999999864 8999999999999999999996
Q ss_pred cCCeeEEecc
Q 029100 187 CGCVAKLRTT 196 (199)
Q Consensus 187 ~~~~~~~r~~ 196 (199)
|+.|+||.+
T Consensus 155 -g~~~~lR~~ 163 (226)
T 2pjm_A 155 -GGEAVIRLG 163 (226)
T ss_dssp -TCEEEECBC
T ss_pred -CCceEEeec
Confidence 999999975
No 4
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=8.3e-37 Score=257.43 Aligned_cols=159 Identities=45% Similarity=0.718 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccccEE
Q 029100 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLA 110 (199)
Q Consensus 31 ~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~D~a 110 (199)
+++|++||++|+++|+||++|+||+|||+.+++++|.++.+.+.+ ++++||||..++.++.+.|+++..+.+..++|++
T Consensus 2 ~~~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~-~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a 80 (225)
T 3l7o_A 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT 80 (225)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred hHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCC-CEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence 578999999999999999999999999999999999875322223 7999999999999998899999999888899999
Q ss_pred EEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhccCCe
Q 029100 111 IDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCV 190 (199)
Q Consensus 111 Fig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~~~~ 190 (199)
|+|||+||.+++++++.+++.+++|+++++|+++|+++|+|||++++|. +|+|+||.|++|.+|.+.|.+| |+.
T Consensus 81 ~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg~--~plPvEV~p~a~~~v~~~l~~l----G~~ 154 (225)
T 3l7o_A 81 VDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLGA--FRLPVEVVQYGAERLFREFEKK----GYK 154 (225)
T ss_dssp EECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSCS--SCEEEEECSTTHHHHHHHHHHT----TCC
T ss_pred EEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcCC--CCEEEEEehhHHHHHHHHHHHc----CCc
Confidence 9999999999999999999999999999999999999999999999984 8999999999999999999996 999
Q ss_pred eEEecc
Q 029100 191 AKLRTT 196 (199)
Q Consensus 191 ~~~r~~ 196 (199)
|+||.+
T Consensus 155 ~~lR~~ 160 (225)
T 3l7o_A 155 PSFREY 160 (225)
T ss_dssp EEECEE
T ss_pred eEEEEc
Confidence 999974
No 5
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=2.7e-36 Score=257.97 Aligned_cols=171 Identities=39% Similarity=0.638 Sum_probs=150.3
Q ss_pred CCCCcCCChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEec
Q 029100 22 SPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (199)
Q Consensus 22 ~~~~~~~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l 101 (199)
.|-|.-++++++|++||++|+++|++|++|+||+|||+.+++++|.++.+. .+ ++++||||..++.++.+.|++++.+
T Consensus 16 ~~~~~~m~~~e~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~-gl-~ItvVttS~~ta~~l~~~GI~l~~l 93 (255)
T 3hhe_A 16 TQGPGSMNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVAN-GL-RVTCVATSQYSEQLCHKFGVPISTL 93 (255)
T ss_dssp -------CHHHHHHHHHHHHHTTCCTTEEEEECCSHHHHHHHHHHHHHHHT-TC-CEEEEESSHHHHHHHHHTTCCBCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhcc-CC-cEEEEcCCHHHHHHHHHcCCcEEec
Confidence 455666779999999999999999999999999999999999999875322 23 7999999999999999999999999
Q ss_pred CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHH
Q 029100 102 DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQ 181 (199)
Q Consensus 102 ~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~ 181 (199)
.+..++|++|+|||+||.+++++++.+++.+++|+++++|+++|+|+|+|||++++| .+++|+||.|++|.+|.+.|.
T Consensus 94 ~~~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG--~~plPVEViP~a~~~v~~~l~ 171 (255)
T 3hhe_A 94 EKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG--AFALPIEVNPFGIHATRIAIE 171 (255)
T ss_dssp TTCCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHH
T ss_pred ccccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC--CCCeEEEEchhHHHHHHHHHH
Confidence 876699999999999999999999999999999999999999999999999999998 389999999999999999999
Q ss_pred hhhhc--cCCeeEEecc
Q 029100 182 DLFED--CGCVAKLRTT 196 (199)
Q Consensus 182 d~~~~--~~~~~~~r~~ 196 (199)
++|.. +|+.|++|.+
T Consensus 172 ~~~~~~glgg~~~lR~~ 188 (255)
T 3hhe_A 172 KAADNLGLSGEITLRMN 188 (255)
T ss_dssp HHHHHHTCCSCEEECEE
T ss_pred hhhccccCCCeEEEeeC
Confidence 97744 4789999973
No 6
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=100.00 E-value=1.4e-36 Score=258.81 Aligned_cols=166 Identities=45% Similarity=0.742 Sum_probs=147.3
Q ss_pred ChHHHHHHHHHHHHh-cCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccc
Q 029100 29 TQDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (199)
Q Consensus 29 ~~~e~K~~IA~~Aa~-lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~ 107 (199)
+.++.|++||++|++ +|+||++||||+|||+.+++++|.++.+...+.++++||||+.++..+.+.|++++.+.+--++
T Consensus 8 ~~~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~i 87 (244)
T 2f8m_A 8 HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNI 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCCB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecccCcC
Confidence 357899999999999 9999999999999999999999975421122225899999999999998889998877532289
Q ss_pred cEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCC-CCcCCCCcccceEEecCCHHHHHHHHHhhhhc
Q 029100 108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV-PHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (199)
Q Consensus 108 D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~-~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~ 186 (199)
|++|+|||||+.+++++.+.+++.+++++|.++|+++|+|+|+|||+ +++|.. +|+|+||.|++|.+|.+.|.+||+.
T Consensus 88 D~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~-~plPvEV~p~a~~~v~~~l~~l~~~ 166 (244)
T 2f8m_A 88 DITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMT-GAVPIEILTFGYEKIIENLLKIYTL 166 (244)
T ss_dssp SEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCS-SCEEEEECSTTHHHHHHHHTTSTTT
T ss_pred CEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCCC-CcEEEEEcccHHHHHHHHHHHHhhc
Confidence 99999999999998888889999999997777899999999999999 899864 7999999999999999999999988
Q ss_pred cCCeeEEec
Q 029100 187 CGCVAKLRT 195 (199)
Q Consensus 187 ~~~~~~~r~ 195 (199)
.|+.|+||.
T Consensus 167 ~G~~~~lR~ 175 (244)
T 2f8m_A 167 KGCTYKIRK 175 (244)
T ss_dssp TTCEEEECE
T ss_pred cCCceEEEE
Confidence 899999995
No 7
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=9.3e-38 Score=262.43 Aligned_cols=156 Identities=40% Similarity=0.680 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEE-ECCcHHHHHHHHhCCCceEecCCCccc
Q 029100 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (199)
Q Consensus 29 ~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltV-vTnSl~~a~~l~~~g~~v~~l~~~~~~ 107 (199)
++.++|++||++|+++|+|||+||||+|||+++++++|.++. .++|+ ||||+.++..+...|++++.+.+-+++
T Consensus 2 ~~~~~K~~IA~~Aa~lI~dg~~I~LdsGST~~~la~~L~~~~-----~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~ 76 (219)
T 1o8b_A 2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMK-----GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSL 76 (219)
T ss_dssp ---------------------CEEECCSCC--------------------CCEEESCCC------------CCGGGCSCE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhccC-----CCEEEEECCcHHHHHHHHhCCCeEEEeCccCcC
Confidence 567889999999999999999999999999999999997541 05899 999999999988788888887654599
Q ss_pred cEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhcc
Q 029100 108 DLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC 187 (199)
Q Consensus 108 D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~ 187 (199)
|++|+||+|++.+++++++.+++.+|++++.++|+++|+|+|||||++++| .+|+|+||.|++|.+|.+.|.+|
T Consensus 77 D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~l---- 150 (219)
T 1o8b_A 77 GIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG--KFPLPVEVIPMARSAVARQLVKL---- 150 (219)
T ss_dssp EEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHHHHT----
T ss_pred CEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC--CCcEEEEEChhHHHHHHHHHHHc----
Confidence 999999999999888888999999999988878999999999999999898 38999999999999999999997
Q ss_pred CCeeEEec
Q 029100 188 GCVAKLRT 195 (199)
Q Consensus 188 ~~~~~~r~ 195 (199)
|+.|+||+
T Consensus 151 g~~~~~R~ 158 (219)
T 1o8b_A 151 GGRPEYRQ 158 (219)
T ss_dssp TCEEEECT
T ss_pred CCCcEeeC
Confidence 99999995
No 8
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=2.4e-36 Score=255.03 Aligned_cols=160 Identities=51% Similarity=0.781 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCcccc
Q 029100 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (199)
Q Consensus 29 ~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~D 108 (199)
.+.++|++||++|+++|+|||+||||+|||+.+++++|.++.+...+.++++||||+.++..+...|++++.+.+ +++|
T Consensus 4 ~~~~~K~~IA~~Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~-~~~D 82 (227)
T 1uj6_A 4 PLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVD 82 (227)
T ss_dssp TTHHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TCEE
T ss_pred chHHHHHHHHHHHHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEEcCC-CcCC
Confidence 367889999999999999999999999999999999997542111121289999999999998888999998865 9999
Q ss_pred EEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhccC
Q 029100 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG 188 (199)
Q Consensus 109 ~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~~ 188 (199)
++|+||+||+.++.++++.+++.+|+++++++|+++|+|+|+|||++++| .+++|+||.|++|.+|.+.|.+| |
T Consensus 83 ~af~Gadgvd~~~~~~~~~g~a~~kekiva~~a~~~ivlaD~sK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~~----g 156 (227)
T 1uj6_A 83 LAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIADL----G 156 (227)
T ss_dssp EEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHTT----T
T ss_pred EEEECCCccCccccEECCHHHHHHHHHHHHhccCCEEEEEEcchhccccC--CCceeEEECcCHHHHHHHHHHhh----C
Confidence 99999999998887788899999999999876899999999999998888 38999999999999999999997 9
Q ss_pred CeeEEec
Q 029100 189 CVAKLRT 195 (199)
Q Consensus 189 ~~~~~r~ 195 (199)
+.|+||.
T Consensus 157 ~~~~~R~ 163 (227)
T 1uj6_A 157 GEPELRM 163 (227)
T ss_dssp CCEEECE
T ss_pred CCeEEEe
Confidence 9999995
No 9
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=1.8e-36 Score=255.22 Aligned_cols=158 Identities=37% Similarity=0.582 Sum_probs=147.2
Q ss_pred CCChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEE-ECCcHHHHHHHHhCCCceEecCCCc
Q 029100 27 ILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYP 105 (199)
Q Consensus 27 ~~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltV-vTnSl~~a~~l~~~g~~v~~l~~~~ 105 (199)
.++++++|++||++|+++|+||++|+||+|||+.+++++|.++. .++++ ||||..++..+.+.|+++..+.+.+
T Consensus 6 ~~~~~~~K~~iA~~A~~~V~~g~~IglgsGST~~~~i~~L~~~~-----~~itv~VtnS~~~a~~l~~~gi~l~~l~~~~ 80 (224)
T 3kwm_A 6 KNNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYR-----DKIKTVVSSSEDSTRKLKALGFDVVDLNYAG 80 (224)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHHGGGCT-----TTEEEEEESCHHHHHHHHHTTCCBCCHHHHC
T ss_pred hcChHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhc-----CceEEEECCcHHHHHHHHHcCCeEEecCccc
Confidence 46789999999999999999999999999999999999998642 27998 9999999999999999999988768
Q ss_pred cccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhh
Q 029100 106 VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFE 185 (199)
Q Consensus 106 ~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~ 185 (199)
++|++|+|||++|.+++++++.+++.+++|+++++|+++|+++|+|||++++|. +|+|+||.|++|.+|.+.|.+|
T Consensus 81 ~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg~--~plPvEV~p~a~~~v~~~l~~l-- 156 (224)
T 3kwm_A 81 EIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGN--FPLPIEVIPMARSYIARQIVKL-- 156 (224)
T ss_dssp SEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBCS--SCEEEEECGGGHHHHHHHHHHT--
T ss_pred cccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcCC--CCeEEEEChHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999999899999999999999999983 8999999999999999999996
Q ss_pred ccCCeeEEec
Q 029100 186 DCGCVAKLRT 195 (199)
Q Consensus 186 ~~~~~~~~r~ 195 (199)
|+.|+||.
T Consensus 157 --g~~~~lR~ 164 (224)
T 3kwm_A 157 --GGQPVYRE 164 (224)
T ss_dssp --TCEEEECT
T ss_pred --CCCeEEec
Confidence 99999997
No 10
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=258.45 Aligned_cols=177 Identities=31% Similarity=0.560 Sum_probs=141.9
Q ss_pred cCCCCCCCCCCcCCChHHHHHHHHHHHHh-cCc--CCCEEEECcChhHHHHHHHHhchhhcCCCC----CEEEECCcHHH
Q 029100 15 TGLSPLSSPPPVILTQDELKKIAAYKAVE-FVE--SGMVLGLGTGSTAKHAVDRIGELLRQGKLT----NIVGIPTSKKT 87 (199)
Q Consensus 15 ~~~~~~~~~~~~~~~~~e~K~~IA~~Aa~-lI~--dgdtIfLdsGTT~~~la~~L~~~~~~~~l~----~ltVvTnSl~~ 87 (199)
+|+.+.|+-|+..+.+.++|++||++|++ +|+ ||++||||+|||+.+++++|.++.+.++++ ++++||||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~K~~IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~ 82 (264)
T 1xtz_A 3 AGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQS 82 (264)
T ss_dssp ----------------CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHH
T ss_pred CCCCccCCCcccCCCHHHHHHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHH
Confidence 67888888899999999999999999999 999 999999999999999999997642111110 38999999999
Q ss_pred HHHHHhCCCceEecCCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCC-CCcCCCCc--cc
Q 029100 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLV-PHLGGSGL--AM 164 (199)
Q Consensus 88 a~~l~~~g~~v~~l~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~-~~~g~~~~--~~ 164 (199)
+..+.+.|++++.+.+-+++|++|+|||||+.+++++.+.+++.++++++.++|+++|+|+|+|||+ +++|.. | ++
T Consensus 83 a~~l~~~gi~v~~l~~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~-~~~pl 161 (264)
T 1xtz_A 83 RNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKN-WRQGV 161 (264)
T ss_dssp HHHHHHTTCEECCTTTCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSS-CCSCE
T ss_pred HHHHHHCCCeEEEehhcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccccccc-CCCCE
Confidence 9999888999988865569999999999999988888889999999998887899999999999999 889853 6 99
Q ss_pred ceEEecCCHHHHHHHHHhhhhccCC-eeEEec
Q 029100 165 PVEVVPYCWKFTAKRLQDLFEDCGC-VAKLRT 195 (199)
Q Consensus 165 piev~~~~~~~v~~~l~d~~~~~~~-~~~~r~ 195 (199)
|+||.|++|.+|.+.|.+. +|+ .|+||.
T Consensus 162 PVEV~p~a~~~v~~~l~~~---~g~~~~~lR~ 190 (264)
T 1xtz_A 162 PIEIVPSSYVRVKNDLLEQ---LHAEKVDIRQ 190 (264)
T ss_dssp EEEECGGGHHHHHHHHHHT---SCCSEEEECE
T ss_pred eEEEChhHHHHHHHHHHHH---cCCCCceEee
Confidence 9999999999999999554 488 999996
No 11
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=100.00 E-value=1.8e-34 Score=244.96 Aligned_cols=158 Identities=40% Similarity=0.611 Sum_probs=147.9
Q ss_pred CChHHHHHHHHHHHHhcCcC----CCEEEECcChhHHHHHHHHhchhhcCCCCCEE-EECCcHHHHHHHHhCCCceEecC
Q 029100 28 LTQDELKKIAAYKAVEFVES----GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIV-GIPTSKKTHEQAVSLGIPLSDLD 102 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~lI~d----gdtIfLdsGTT~~~la~~L~~~~~~~~l~~lt-VvTnSl~~a~~l~~~g~~v~~l~ 102 (199)
++++++|+++|++|+++|+| |++|+||+|||+.+++++|.++. .+++ +||||..++.++.+.|+++..+.
T Consensus 9 m~~~~~K~~aA~~A~~~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~-----~~i~~~V~tS~~t~~~~~~~Gi~l~~l~ 83 (239)
T 3uw1_A 9 MTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVK-----DRYRGAVSSSVATTERLKSHGIRVFDLN 83 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTTCEEEECCSHHHHHHHHHHHTTG-----GGSCEEEESSHHHHHHHHHTTCCBCCGG
T ss_pred CCHHHHHHHHHHHHHHHhhccCcCCCEEEECccHHHHHHHHHHHhhh-----ccceEEeCCcHHHHHHHHHcCCcEEecc
Confidence 67899999999999999999 99999999999999999998752 1467 79999999999999999999998
Q ss_pred CCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHh
Q 029100 103 SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQD 182 (199)
Q Consensus 103 ~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d 182 (199)
+..++|++|+|+|+||.++++.++.+++.+++|+++.+|+++|+|+|+|||++++|. +++|+||.|++|.+|.+.|.+
T Consensus 84 ~~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg~--~plPVEViP~a~~~v~~~l~~ 161 (239)
T 3uw1_A 84 EIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLGQ--FPLPVEVVPMARTAIGRRLAA 161 (239)
T ss_dssp GCSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBTS--SCEEEEECGGGHHHHHHHHHH
T ss_pred cccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcCC--CCeEEEEChhHHHHHHHHHHH
Confidence 878999999999999999999999999999999999999999999999999999984 899999999999999999999
Q ss_pred hhhccCCeeEEecc
Q 029100 183 LFEDCGCVAKLRTT 196 (199)
Q Consensus 183 ~~~~~~~~~~~r~~ 196 (199)
| |+.|+||.+
T Consensus 162 l----G~~~~lR~~ 171 (239)
T 3uw1_A 162 L----GGVPVLRVK 171 (239)
T ss_dssp T----TCEEEECBC
T ss_pred c----CCCeEEeec
Confidence 6 999999984
No 12
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=99.97 E-value=1.6e-31 Score=225.19 Aligned_cols=161 Identities=46% Similarity=0.696 Sum_probs=150.6
Q ss_pred ChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCcccc
Q 029100 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVD 108 (199)
Q Consensus 29 ~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~D 108 (199)
+|++.|+..|++|++||++|++|+|++|||+.+++++|.++.+...+ +++.|+.|..++.++.+.|+++.++.+.-++|
T Consensus 3 ~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD 81 (228)
T 4gmk_A 3 NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHID 81 (228)
T ss_dssp HHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCccc
Confidence 58999999999999999999999999999999999999876433344 78999999999999999999999998878999
Q ss_pred EEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhccC
Q 029100 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCG 188 (199)
Q Consensus 109 ~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~~~ 188 (199)
++|.|||.||.+..+.++.+.+++++|+++.+|+++|+++|+||+.+++|. +|+|+||.|++|.+|...|.+| |
T Consensus 82 ~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG~--fplPVEVip~a~~~v~~~l~~l----G 155 (228)
T 4gmk_A 82 LTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLGQ--FPLPVEVIPYGSGTVFKRFEEK----G 155 (228)
T ss_dssp EEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSCS--SCEEEEECSTTHHHHHHHHHHT----T
T ss_pred eEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccCC--eeEEEEEehhhHHHHHHHHHHc----C
Confidence 999999999999999999999999999999999999999999999999983 7999999999999999999996 9
Q ss_pred CeeEEecc
Q 029100 189 CVAKLRTT 196 (199)
Q Consensus 189 ~~~~~r~~ 196 (199)
+.|+||++
T Consensus 156 ~~~~~R~~ 163 (228)
T 4gmk_A 156 LNPEFRKN 163 (228)
T ss_dssp CCEEECBC
T ss_pred Cceeeccc
Confidence 99999985
No 13
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.1e-30 Score=218.10 Aligned_cols=162 Identities=43% Similarity=0.685 Sum_probs=147.4
Q ss_pred CChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCCCccc
Q 029100 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVV 107 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~~~~~ 107 (199)
++|+++|+..|++|++||+||++|+|++|||+.+++++|.++.+...+ +++.++.|..++..+.+.|+++.++.+ ..+
T Consensus 1 M~~d~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l-~i~~v~tS~~t~~~a~~~gi~l~~l~~-~~i 78 (226)
T 3ixq_A 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDE-YDV 78 (226)
T ss_dssp -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTT-CCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCC-eeEeecccHHHHHHHHhcCCCcccccc-ccc
Confidence 578999999999999999999999999999999999999875433334 688999999999999999999999875 579
Q ss_pred cEEEEccCcccC-CCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEecCCHHHHHHHHHhhhhc
Q 029100 108 DLAIDGADEVDP-FMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED 186 (199)
Q Consensus 108 D~aFig~~gi~~-~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~~~~~~v~~~l~d~~~~ 186 (199)
|++|.|||.|+. +..+.++.+.+++++|+++.+|+++|+++|+||+.+++|.+ ||+|+||.|++|++|.+.|.+|
T Consensus 79 Dl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~~-fplPVEVip~a~~~v~~~l~~l--- 154 (226)
T 3ixq_A 79 DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEK-FPIPVEVIPSAYRVVIRALSEM--- 154 (226)
T ss_dssp SEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSS-SCEEEEECGGGHHHHHHHHHHT---
T ss_pred cEEEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEeccccchhhcCCC-CCccEEEechHHHHHHHHHHHc---
Confidence 999999999985 67899999999999999999999999999999999999864 8999999999999999999986
Q ss_pred cCCeeEEecc
Q 029100 187 CGCVAKLRTT 196 (199)
Q Consensus 187 ~~~~~~~r~~ 196 (199)
|+.|++|.+
T Consensus 155 -G~~~~~R~~ 163 (226)
T 3ixq_A 155 -GGEAVIRLG 163 (226)
T ss_dssp -TCEEEECBC
T ss_pred -CCCceEEee
Confidence 999999975
No 14
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.33 E-value=1.1e-11 Score=106.84 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEE-ECcChhHHHHHHHHhchhhcCCCCCEEEEC-C------cHHHHHHHHhCCCceEec
Q 029100 30 QDELKKIAAYKAVEFVESGMVLG-LGTGSTAKHAVDRIGELLRQGKLTNIVGIP-T------SKKTHEQAVSLGIPLSDL 101 (199)
Q Consensus 30 ~~e~K~~IA~~Aa~lI~dgdtIf-LdsGTT~~~la~~L~~~~~~~~l~~ltVvT-n------Sl~~a~~l~~~g~~v~~l 101 (199)
..+.|++||+.++++|++|++|+ ++.|+|++.+++.+.+.. ++++|++ + +..++.+|.+.|+++.-+
T Consensus 92 ~~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~-----~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli 166 (276)
T 1vb5_A 92 MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERK-----KRFKVILTESSPDYEGLHLARELEFSGIEFEVI 166 (276)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTT-----CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcC-----CeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEE
Confidence 45779999999999999999999 999999999999986521 2688877 6 666888888889876533
Q ss_pred CCC------ccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceE--------
Q 029100 102 DSY------PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVE-------- 167 (199)
Q Consensus 102 ~~~------~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~pie-------- 167 (199)
... -++|+.|+|+++|..+|++..-.+...+... +.+....+|+++|++||+.. ..+..+|+|
T Consensus 167 ~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~-A~~~~vp~~V~a~~~K~~~~--~~~~~i~iE~r~~~e~~ 243 (276)
T 1vb5_A 167 TDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALA-CHENAIPFYVAAETYKFHPT--LKSGDVMLMERDLIRGN 243 (276)
T ss_dssp CGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHH-HHHTTCCEEEECCGGGBCSS--CCGGGCCCCBCCCEETT
T ss_pred cHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHH-HHHcCCCEEEeccccccCcc--cCccccccccCCccccC
Confidence 110 1799999999999999887544667777644 45568999999999999754 222455554
Q ss_pred -------EecCCHHHHHHHHHhh
Q 029100 168 -------VVPYCWKFTAKRLQDL 183 (199)
Q Consensus 168 -------v~~~~~~~v~~~l~d~ 183 (199)
+...+.++|+..|||.
T Consensus 244 v~v~np~fD~tP~~lI~~iITe~ 266 (276)
T 1vb5_A 244 VRIRNVLFDVTPWKYVRGIITEL 266 (276)
T ss_dssp EECCCBCEEEECGGGCSEEEETT
T ss_pred ccccCCCeEecCHHHCCEEEeCC
Confidence 2334455566666664
No 15
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=98.30 E-value=1.1e-06 Score=75.98 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhc----CcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECC
Q 029100 31 DELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (199)
Q Consensus 31 ~e~K~~IA~~Aa~l----I~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTn 83 (199)
.+.|++||++|+++ |++|++|+||+|||+..++++|.... ...+++++++
T Consensus 89 ~~~k~~ia~~AA~~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~---~~~~~~vv~l 142 (315)
T 2w48_A 89 EEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS---QSRQVICVPI 142 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCS---SCCCCEEEES
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhhcccc---CCCCcEEEEc
Confidence 44699999999997 99999999999999999999996420 1126888885
No 16
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=98.23 E-value=8.1e-07 Score=77.93 Aligned_cols=89 Identities=8% Similarity=0.031 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHhc----CcC-CCEEEECcChhHHHHHHHHhchhhcCCCCCEEEEC-----------CcHHHHHHH
Q 029100 28 LTQDELKKIAAYKAVEF----VES-GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIP-----------TSKKTHEQA 91 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~l----I~d-gdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvT-----------nSl~~a~~l 91 (199)
.+.+..|++||++|+++ |++ |++|+||+|||+..++++|.... -...+++++| |+..++..+
T Consensus 118 ~~~~~~k~~ia~~AA~~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~v~vv~l~ggl~~~~~~~~~~i~~~l 195 (345)
T 2o0m_A 118 DIQKKVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLE--TEKRHNLFVPARGGIGEAVSVQANSISAVM 195 (345)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC--CSSEEEEEEESBSCCCCCGGGSHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc--CCCCCcEEEEcCCcCCCCcccCHHHHHHHH
Confidence 34444799999999996 999 99999999999999999996420 0012689999 666666665
Q ss_pred HhC-CCceE-------------ec----------CCC-ccccEEEEccCccc
Q 029100 92 VSL-GIPLS-------------DL----------DSY-PVVDLAIDGADEVD 118 (199)
Q Consensus 92 ~~~-g~~v~-------------~l----------~~~-~~~D~aFig~~gi~ 118 (199)
.+. |.+.. +. ++. .++|++|+|+.+.+
T Consensus 196 a~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~~ 247 (345)
T 2o0m_A 196 ANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRAL 247 (345)
T ss_dssp HHHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHH
T ss_pred HHHhCCceEEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCch
Confidence 432 33211 00 111 47999999999875
No 17
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=97.89 E-value=0.0001 Score=64.52 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEE-CcChhHHHHHHHHhchhhcCCCCCEEEE-CC------cHHHHHHHHhCCCceEec---
Q 029100 33 LKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVGI-PT------SKKTHEQAVSLGIPLSDL--- 101 (199)
Q Consensus 33 ~K~~IA~~Aa~lI~dgdtIfL-dsGTT~~~la~~L~~~~~~~~l~~ltVv-Tn------Sl~~a~~l~~~g~~v~~l--- 101 (199)
.++.||+.++++|++|++|.- +.+.|++.+.+...+. + ++++|+ +- ....+.++.+.|+++.-.
T Consensus 107 a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds 181 (315)
T 3ecs_A 107 SRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAA---K--KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA 181 (315)
T ss_dssp HHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTT---T--CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHc---C--CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh
Confidence 367899999999999999975 5566777676665432 1 134443 21 223567778889876532
Q ss_pred -----CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEe
Q 029100 102 -----DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169 (199)
Q Consensus 102 -----~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~ 169 (199)
.+ .+|+.|+|+++|..+|++..--+...+- .+.......+|+++++.||.......+..+|+|..
T Consensus 182 a~~~~m~--~vd~VivGAd~i~~nG~v~nkiGT~~iA-l~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~ 251 (315)
T 3ecs_A 182 AVGYIME--KADLVIVGAEGVVENGGIINKIGTNQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFK 251 (315)
T ss_dssp GHHHHGG--GCSEEEEECSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGT
T ss_pred HHHHHHH--hCCEEEECceEEecCCCeeehhhhHHHH-HHHHHhCCCEEEEeccccccccCCCCcccCCcccc
Confidence 22 7999999999999988765433334432 33445578899999999996543222234555443
No 18
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.89 E-value=3.4e-05 Score=69.98 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHH
Q 029100 30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87 (199)
Q Consensus 30 ~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~ 87 (199)
..+.++.||+.|+++|+||+++.+|.|+....++.+|.++ .++.+.|.-+..
T Consensus 192 ~~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~te~~~~ 243 (439)
T 3d3u_A 192 GSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGH------KDLGIHTEMFTD 243 (439)
T ss_dssp CCHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHTTTTC------CSBEEECSCBCH
T ss_pred CChHHHHHHHHHHHhcCCCCEEEeccchHHHHHHHHHhhC------CCceEEEEEecc
Confidence 4566999999999999999999999999999999999775 278888885553
No 19
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=97.79 E-value=4.4e-05 Score=65.03 Aligned_cols=114 Identities=15% Similarity=0.243 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHH-----------HHH-HHHhCCC-----
Q 029100 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKK-----------THE-QAVSLGI----- 96 (199)
Q Consensus 34 K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~-----------~a~-~l~~~g~----- 96 (199)
++.||+.|+++|+||++|+++.| .-..++.++.+.. . .++++.+.+-- ... .+. .+.
T Consensus 8 ~e~Ia~~aA~~i~dG~~v~lGiG-iP~~va~~~~~~~--~--~~l~l~~E~G~lg~~p~~~~~~~~d~~~~-~~a~~~~~ 81 (260)
T 1poi_B 8 KEMQAVTIAKQIKNGQVVTVGTG-LPLIGASVAKRVY--A--PDCHIIVESGLMDCSPVEVPRSVGDLRFM-AHCGCIWP 81 (260)
T ss_dssp HHHHHHHHHTTCCTTCEEECCSS-HHHHHHHHHHHTT--C--TTCEEEETTTEEEECCSSCCSSTTCHHHH-TSEEEECC
T ss_pred HHHHHHHHHHhCCCCCEEEeCCC-HHHHHHHHHHHhc--C--CCEEEEEeCceecCcccCcccCccCCCcE-eehhhhcC
Confidence 67999999999999999999999 6677888887521 0 25666663310 000 011 111
Q ss_pred --ceEec-----CCCccccEEEEccCcccCCCCccc--------------CcchHHHHHHHHHHhcCcEEEEEeCC--CC
Q 029100 97 --PLSDL-----DSYPVVDLAIDGADEVDPFMNLVK--------------GRGGSLLREKMVEGACKKFVVIVDES--KL 153 (199)
Q Consensus 97 --~v~~l-----~~~~~~D~aFig~~gi~~~~~~~~--------------~~~~a~ik~~~i~~~a~k~IlLaD~s--Kf 153 (199)
...++ .+.-++|++|+|+..||..|++.. +.+++. - +.+.|+++|++ +|+ ||
T Consensus 82 ~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~---D-~~~~A~~~iv~-~h~~rk~ 156 (260)
T 1poi_B 82 NVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGAN---G-IATYSNTIIMM-QHEKRRF 156 (260)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHH---H-HHHHSCEEEEC-CCCTTTB
T ss_pred HHHHhcccchhhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchH---H-HHhCCCEEEEE-ECCCCee
Confidence 11233 455689999999999998776431 111211 1 33457888888 887 78
Q ss_pred CCCcC
Q 029100 154 VPHLG 158 (199)
Q Consensus 154 ~~~~g 158 (199)
.+++.
T Consensus 157 V~~v~ 161 (260)
T 1poi_B 157 MNKID 161 (260)
T ss_dssp CSSCS
T ss_pred cccCc
Confidence 76544
No 20
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=97.58 E-value=0.00095 Score=58.78 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCcCCCEEEE-CcChhHHHHHHHHhchhhcCCCCCEEE-ECCc------HHHHHHHHhCCCceEecC-
Q 029100 32 ELKKIAAYKAVEFVESGMVLGL-GTGSTAKHAVDRIGELLRQGKLTNIVG-IPTS------KKTHEQAVSLGIPLSDLD- 102 (199)
Q Consensus 32 e~K~~IA~~Aa~lI~dgdtIfL-dsGTT~~~la~~L~~~~~~~~l~~ltV-vTnS------l~~a~~l~~~g~~v~~l~- 102 (199)
+..+.||+.++++|++|++|.- ..+.|++.+.+...+. +. +++| ++-+ -..+.+|.+.|+++.-..
T Consensus 126 ~~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~---gk--~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~D 200 (338)
T 3a11_A 126 KALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQ---GK--DIKVIVTETRPKWQGKITAKELASYGIPVIYVVD 200 (338)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHT---TC--CCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECG
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHC---CC--eEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEeh
Confidence 3457799999999999999985 4456777777766442 11 2333 2222 235777888898765321
Q ss_pred ---CC--ccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEec
Q 029100 103 ---SY--PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP 170 (199)
Q Consensus 103 ---~~--~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~ 170 (199)
.. -.+|+.|+|+++|..+|++..--+...+- .+.......+|++|.++||...... +..+|+|..+
T Consensus 201 sa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~~-g~~i~iE~r~ 271 (338)
T 3a11_A 201 SAARHYMKMTDKVVMGADSITVNGAVINKIGTALIA-LTAKEHRVWTMIAAETYKFHPETML-GQLVEIEMRD 271 (338)
T ss_dssp GGTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCEEEEECCGGGBCSCCSS-SSCCCCCBCC
T ss_pred HHHHHHHHhCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEecccceecccCCC-CcccccccCC
Confidence 11 37999999999999998764333333332 3334456788999999999754332 3567777654
No 21
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=97.43 E-value=1.3e-05 Score=66.32 Aligned_cols=108 Identities=23% Similarity=0.294 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHH-----------HHHhCCCc---eE
Q 029100 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----------QAVSLGIP---LS 99 (199)
Q Consensus 34 K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~-----------~l~~~g~~---v~ 99 (199)
|+.||++||..|+||++|+|+.|. -..++.+++ . .++++.+.+-.+-. .+.+.|-. ..
T Consensus 2 r~~Ia~raA~el~dG~~vnlGIGi-P~~va~~~~-~------~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~~~~t~~ 73 (207)
T 3rrl_B 2 REAIIKRAAKELKEGMYVNLGIGL-PTLVANEVS-G------MNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVV 73 (207)
T ss_dssp HHHHHHHHHTTCCTTCEEEECTTG-GGGGGGGGS-S------SCCEEEETTTEEEECCCCCTTCCCTTCBCTTSBBCCEE
T ss_pred hHHHHHHHHHhCCCCCEEEECCCh-HHHHHHhcc-C------CcEEEEeccceecCcCCCCccccCHhHeecCCceeeec
Confidence 789999999999999999999994 556788776 3 15676665432210 00011211 10
Q ss_pred ------------ecCCCccccEEEEccCcccCCCCccc---------CcchHHHHHHHHHHhcCcEEEEEeCCCC
Q 029100 100 ------------DLDSYPVVDLAIDGADEVDPFMNLVK---------GRGGSLLREKMVEGACKKFVVIVDESKL 153 (199)
Q Consensus 100 ------------~l~~~~~~D~aFig~~gi~~~~~~~~---------~~~~a~ik~~~i~~~a~k~IlLaD~sKf 153 (199)
.+.+..++|++|+|+..||..|.+.. +..++. - +.+.|+++|++.+|++-
T Consensus 74 ~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~---d-~~~~A~~vi~~~~~t~k 144 (207)
T 3rrl_B 74 PGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAM---D-LVHGAKKVIVIMEHCNK 144 (207)
T ss_dssp EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHH---H-HHHHSSEEEEECCSBCT
T ss_pred CCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHH---H-HHhCCCEEEEEEeeecC
Confidence 12356799999999999998775432 111111 1 33458999999999864
No 22
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=97.41 E-value=0.001 Score=58.88 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECcCh---------hHHHHHHHHhchhhcCCCCCEEEE-CCcH-------HHHHHHHhC
Q 029100 32 ELKKIAAYKAVEFVESGMVLGLGTGS---------TAKHAVDRIGELLRQGKLTNIVGI-PTSK-------KTHEQAVSL 94 (199)
Q Consensus 32 e~K~~IA~~Aa~lI~dgdtIfLdsGT---------T~~~la~~L~~~~~~~~l~~ltVv-TnSl-------~~a~~l~~~ 94 (199)
+..+.|++.++++|++|++|.--+.| |++.+.+...+. + ++++|+ +-+- .++.+|.+.
T Consensus 133 ~~~~~I~~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~ 207 (347)
T 1t9k_A 133 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLTAWELMKD 207 (347)
T ss_dssp HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---C--CeEEEEEeCCCCccccHHHHHHHHHhC
Confidence 45667999999999999999875433 777777766443 1 134443 2211 246777878
Q ss_pred CCceEec--------CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccce
Q 029100 95 GIPLSDL--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV 166 (199)
Q Consensus 95 g~~v~~l--------~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~pi 166 (199)
|+++.-. .++-.+|+.|+|+++|..+|++..--+...+ ..+......-+|++|..+||...... +..+|+
T Consensus 208 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~l-Al~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~i 285 (347)
T 1t9k_A 208 GIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSL-AVLAKRNNIPFYVAAPVSTIDPTIRS-GEEIPI 285 (347)
T ss_dssp TCEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHH-HHHHHHTTCCEEEECCGGGEETTCSS-GGGSCC
T ss_pred CCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHH-HHHHHHcCCCEEEecccceeccccCC-cccccc
Confidence 9876532 2333599999999999998876433333333 23334556789999999999744332 356777
Q ss_pred EEec
Q 029100 167 EVVP 170 (199)
Q Consensus 167 ev~~ 170 (199)
|..+
T Consensus 286 E~r~ 289 (347)
T 1t9k_A 286 EERR 289 (347)
T ss_dssp CBCC
T ss_pred ccCC
Confidence 6654
No 23
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=97.34 E-value=0.0008 Score=60.10 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECc--C-------hhHHHHHHHHhchhhcCCCCCEEE-ECCcH-------HHHHHHHhC
Q 029100 32 ELKKIAAYKAVEFVESGMVLGLGT--G-------STAKHAVDRIGELLRQGKLTNIVG-IPTSK-------KTHEQAVSL 94 (199)
Q Consensus 32 e~K~~IA~~Aa~lI~dgdtIfLds--G-------TT~~~la~~L~~~~~~~~l~~ltV-vTnSl-------~~a~~l~~~ 94 (199)
+..++||+.++++|++|++|.--+ | .|++.+.+...+. +. +++| ++-+- .++.+|.+.
T Consensus 158 ~~~~~I~~~g~~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rltA~eL~~~ 232 (374)
T 2yvk_A 158 ETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---DL--GLHIYACETRPVLQGSRLTAWELMQG 232 (374)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---TC--CCEEEEECCTTTTHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---CC--EEEEEEeCCCCccccHHHHHHHHHHc
Confidence 445679999999999999998843 2 2666776666432 11 2333 22211 146777878
Q ss_pred CCceEec--------CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccce
Q 029100 95 GIPLSDL--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV 166 (199)
Q Consensus 95 g~~v~~l--------~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~pi 166 (199)
|+++.-+ .++-.+|+.|+|+++|..+|++..--+...+- .+......-+|++|..+||...... +..+|+
T Consensus 233 GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~-g~~i~i 310 (374)
T 2yvk_A 233 GIDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVKC-GADIPI 310 (374)
T ss_dssp TCEEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSS-GGGSCC
T ss_pred CCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeCccCCC-cccccc
Confidence 9876532 23234999999999999998764333333332 3334456789999999999754333 357777
Q ss_pred EEec
Q 029100 167 EVVP 170 (199)
Q Consensus 167 ev~~ 170 (199)
|..+
T Consensus 311 Eer~ 314 (374)
T 2yvk_A 311 EERD 314 (374)
T ss_dssp CBCC
T ss_pred ccCC
Confidence 7654
No 24
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=97.32 E-value=0.0023 Score=56.62 Aligned_cols=130 Identities=21% Similarity=0.154 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCcCCCEEEECc--C-------hhHHHHHHHHhchhhcCCCCCEEE-ECCcH------H-HHHHHHhC
Q 029100 32 ELKKIAAYKAVEFVESGMVLGLGT--G-------STAKHAVDRIGELLRQGKLTNIVG-IPTSK------K-THEQAVSL 94 (199)
Q Consensus 32 e~K~~IA~~Aa~lI~dgdtIfLds--G-------TT~~~la~~L~~~~~~~~l~~ltV-vTnSl------~-~a~~l~~~ 94 (199)
+..+.||+.++++|++|++|.--+ | .|++.+.+...+. +. +++| ++-+- + ++.+|.+.
T Consensus 131 ~~~~~I~~~g~~~I~~g~~ILThcnsg~lat~g~gtal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rlta~eL~~~ 205 (351)
T 1t5o_A 131 ERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQ---GK--EIRVIACETRPLNQGSRLTCWELMED 205 (351)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHT---TC--CCEEEEECCTTTTHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCccccccCCChHHHHHHHHHHC---CC--EEEEEEeCCCcccccHHHHHHHHHhC
Confidence 345679999999999999998843 1 2677777666442 11 2333 22211 1 46777888
Q ss_pred CCceEec--------CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccce
Q 029100 95 GIPLSDL--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPV 166 (199)
Q Consensus 95 g~~v~~l--------~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~pi 166 (199)
|+++.-+ .++-.+|+.|+|+++|..+| +..--+...+ ..+......-+|++|.++||... . .+..+|+
T Consensus 206 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~l-Al~Ak~~~vPfyV~a~~~k~d~~-~-~g~~i~i 281 (351)
T 1t5o_A 206 GIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTV-SVVAKHHNIPFYVAAPKATFDWE-R-TAKDVVI 281 (351)
T ss_dssp TCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHH-HHHHHHTTCCEEEECCGGGBCTT-C-CGGGCCC
T ss_pred CCCEEEEehhHHHHHhhcCCCCEEEECccchhhcC-cccccCHHHH-HHHHHHcCCCEEEeCccceeccc-c-CCCcccc
Confidence 9876532 23335999999999999988 5332333333 23334557789999999999754 2 2457787
Q ss_pred EEec
Q 029100 167 EVVP 170 (199)
Q Consensus 167 ev~~ 170 (199)
|..+
T Consensus 282 Eer~ 285 (351)
T 1t5o_A 282 EERP 285 (351)
T ss_dssp CBCC
T ss_pred ccCC
Confidence 7654
No 25
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=97.06 E-value=0.0028 Score=56.79 Aligned_cols=132 Identities=15% Similarity=0.024 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCc--------CCCEEEECc--C-------hhHHHHHHHHhchhhcCCCCCEEEE-CCc-------HH
Q 029100 32 ELKKIAAYKAVEFVE--------SGMVLGLGT--G-------STAKHAVDRIGELLRQGKLTNIVGI-PTS-------KK 86 (199)
Q Consensus 32 e~K~~IA~~Aa~lI~--------dgdtIfLds--G-------TT~~~la~~L~~~~~~~~l~~ltVv-TnS-------l~ 86 (199)
+..+.|++.++++|+ +|++|.--+ | .|++.+.+...+. + ++++|+ +-+ -.
T Consensus 154 ~~~~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---g--k~~~V~v~EtRP~~qGarl 228 (383)
T 2a0u_A 154 AFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD---G--KLERVYACETRPWNQGARL 228 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHT---T--CEEEEEEECCTTTTHHHHT
T ss_pred HHHHHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHc---C--CeEEEEEeCCCCccchHHH
Confidence 345669999999999 999998743 1 3677777776543 1 134443 211 12
Q ss_pred HHHHHHhCCCceEec--------CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcC
Q 029100 87 THEQAVSLGIPLSDL--------DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLG 158 (199)
Q Consensus 87 ~a~~l~~~g~~v~~l--------~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g 158 (199)
++.+|.+.|+++.-+ .++-.+|+.|+|++.|..+|.+..--+...+ ..+......-+|++|..+||.....
T Consensus 229 tA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~l-Al~Ak~~~vPfyV~ap~~k~d~~~~ 307 (383)
T 2a0u_A 229 TVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNL-AVSAKFHGVKLYVAAPTTTLDVKTA 307 (383)
T ss_dssp HHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHH-HHHHHHTTCCEEEECCGGGBCTTCC
T ss_pred HHHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHH-HHHHHHcCCCEEEeCCcceecCcCC
Confidence 567788889876532 2323499999999999999876433333333 2333455778999999999975543
Q ss_pred CCCcccceEEec
Q 029100 159 GSGLAMPVEVVP 170 (199)
Q Consensus 159 ~~~~~~piev~~ 170 (199)
. +..+|+|..+
T Consensus 308 ~-g~~i~iEer~ 318 (383)
T 2a0u_A 308 S-GNHVEIEERE 318 (383)
T ss_dssp S-GGGSCCCBCC
T ss_pred C-ccccccccCC
Confidence 3 3577877654
No 26
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=97.00 E-value=0.0037 Score=51.50 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHhcCcCCCEEEECcCh---hHHHHHHHHhchhhcCCCCCEEEECCcH
Q 029100 38 AYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsGT---T~~~la~~L~~~~~~~~l~~ltVvTnSl 85 (199)
|+.|+++|+|||+|++++.+ +-..+.+.|.++ + ++++|+++++.
T Consensus 8 a~eAv~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~---~-~~dLtl~~~~~ 54 (220)
T 1k6d_A 8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES---G-VRDLTLIANDT 54 (220)
T ss_dssp HHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEECSBC
T ss_pred HHHHHhhCCCCCEEEECCccccCCHHHHHHHHHHC---C-CCCEEEEEecC
Confidence 56788999999999998642 356777778654 1 24899998864
No 27
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=96.93 E-value=0.0039 Score=52.20 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHhcCcCCCEEEECc--C-hhHHHHHHHHhchhhcCCCCCEEEECCcH
Q 029100 38 AYKAVEFVESGMVLGLGT--G-STAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLds--G-TT~~~la~~L~~~~~~~~l~~ltVvTnSl 85 (199)
|+.|+++|+|||+|++++ + -+-..+.+.|.++ + .+++|+++|+.
T Consensus 11 a~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~-~kdLtli~~~~ 57 (235)
T 3rrl_A 11 LDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKK---G-IKDLIVVSNNC 57 (235)
T ss_dssp THHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEECSCC
T ss_pred HHHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhc---C-CCcEEEEEcCC
Confidence 566888999999999996 2 2456788888654 2 24899999863
No 28
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=96.76 E-value=0.002 Score=53.97 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHhcCcCCCEEEECcC---hhHHHHHHHHhchhhcCCCCCEEEECCcH
Q 029100 38 AYKAVEFVESGMVLGLGTG---STAKHAVDRIGELLRQGKLTNIVGIPTSK 85 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsG---TT~~~la~~L~~~~~~~~l~~ltVvTnSl 85 (199)
++.|+++|+|||+|++++- .+-..+.+.|.++ + ++++|+++++.
T Consensus 11 a~eAv~~IkdG~tV~~ggf~~~g~P~~li~aL~~~---~-~~dLtl~~~~~ 57 (241)
T 3cdk_A 11 SKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQ---G-VKDLTVVSNNC 57 (241)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---T-CCSEEEEESSC
T ss_pred HHHHHhhCCCCCEEEECCcCccCcHHHHHHHHHHc---C-CCCEEEEEecC
Confidence 5678889999999999863 2556788888654 1 24899998753
No 29
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=96.55 E-value=0.0017 Score=58.84 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=74.0
Q ss_pred HHHHHHHHH-hcCcCCCEEEECcCh-hHHHHHHHHhchhhcCCCCCEEEECCcHHHHH-----HHHh-------------
Q 029100 34 KKIAAYKAV-EFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKKTHE-----QAVS------------- 93 (199)
Q Consensus 34 K~~IA~~Aa-~lI~dgdtIfLdsGT-T~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~-----~l~~------------- 93 (199)
|..-|+.|+ ++|+|||+|+++++. +...++++|.++. ..++++|+++|...... .+..
T Consensus 10 K~~sa~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~--~~~~dLtli~~~~~~~~~~~~~~l~~~i~~~~~~~g~~~ 87 (439)
T 3d3u_A 10 RVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQR--EKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGNS 87 (439)
T ss_dssp HBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTT--TTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC-------
T ss_pred CCCcHHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhh--CCCCCEEEEEecCCCcchhccHHhCCcEEEEECCCChHH
Confidence 444588888 999999999999885 5667888886541 11348999988422110 1110
Q ss_pred -----CCC-ceE--------ecC--CCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCC
Q 029100 94 -----LGI-PLS--------DLD--SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152 (199)
Q Consensus 94 -----~g~-~v~--------~l~--~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sK 152 (199)
.|. ... .+. ..+.+|+||+.+...|.+|+++.+. .......+ .++|+++|+-++...
T Consensus 88 r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~g~-s~~~~~~~-~~aA~~VIveVn~~v 160 (439)
T 3d3u_A 88 RPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGV-SCDYTKAA-AECAPVVVAEVNKQM 160 (439)
T ss_dssp -------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTT-BCBTHHHH-HHHCSEEEEEEESSS
T ss_pred HHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEEec-cccchHHH-HhhCCeEEEEECCCC
Confidence 010 000 111 2378999999999999988775542 22233344 456899999999887
No 30
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=95.55 E-value=0.042 Score=50.15 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=70.5
Q ss_pred HHHHHHH--HHHHHhcCcCCCEEEECcChhH-HHHHHHHhchhhcCCCCCEEEECCc-HHHH--HHHH------------
Q 029100 31 DELKKIA--AYKAVEFVESGMVLGLGTGSTA-KHAVDRIGELLRQGKLTNIVGIPTS-KKTH--EQAV------------ 92 (199)
Q Consensus 31 ~e~K~~I--A~~Aa~lI~dgdtIfLdsGTT~-~~la~~L~~~~~~~~l~~ltVvTnS-l~~a--~~l~------------ 92 (199)
++.+.++ |+.|+++|+|||+|+++++.-. ..|.+.|.++..++.+.++++++.. .... ..+.
T Consensus 20 ~~y~~K~vsaeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 3qli_A 20 ALYDEKLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSM 99 (455)
T ss_dssp HHHHHHBCCHHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEES
T ss_pred HHHHhcCCCHHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeC
Confidence 3344443 8899999999999999976432 5677888655222345689987632 2111 0111
Q ss_pred ----------hCC--------CceEe--------cC-CCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEE
Q 029100 93 ----------SLG--------IPLSD--------LD-SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFV 145 (199)
Q Consensus 93 ----------~~g--------~~v~~--------l~-~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~I 145 (199)
+.| ...++ +. +..++|+||+.+...|.+|.+..+... ..-..++ ++|+++|
T Consensus 100 f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~g~s~-~~~~~~a-~~Ak~VI 177 (455)
T 3qli_A 100 FVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSLGVGN-DYSSRIA-RSARRFI 177 (455)
T ss_dssp SCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEECTTBC-BTHHHHH-HHSSEEE
T ss_pred cCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEEccCC-CchHHHH-hhcCEEE
Confidence 011 11111 11 235799999999999988766543222 1222333 4588888
Q ss_pred EEEeCC
Q 029100 146 VIVDES 151 (199)
Q Consensus 146 lLaD~s 151 (199)
+-++..
T Consensus 178 ~EVN~~ 183 (455)
T 3qli_A 178 VEVNRY 183 (455)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 777653
No 31
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=95.10 E-value=0.051 Score=50.04 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=65.6
Q ss_pred HHHHHhcCcCCCEEEECcCh---hHHHHHHHHhchhhcCCCCCEEEECC-cHH--HHHHHHhCC----------------
Q 029100 38 AYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQGKLTNIVGIPT-SKK--THEQAVSLG---------------- 95 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsGT---T~~~la~~L~~~~~~~~l~~ltVvTn-Sl~--~a~~l~~~g---------------- 95 (199)
|+.|+++|+|||+|++++.+ .-..+.+.|.++....++ ++|++++ +.. ....+...|
T Consensus 18 aeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl-~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~~r~ 96 (497)
T 2g39_A 18 AAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPL-RISLMTGASLGNDLDKQLTEAGVLARRMPFQVDSTLRK 96 (497)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCC-CEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHHHHH
T ss_pred HHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCc-eEEEEecccccccchHHHhcCCceEEEEeeCCCHHHHH
Confidence 77888999999999998642 234566666543211222 5899987 322 111222111
Q ss_pred -----C-ceEe--------c--CCCc-cccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCC
Q 029100 96 -----I-PLSD--------L--DSYP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (199)
Q Consensus 96 -----~-~v~~--------l--~~~~-~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~s 151 (199)
. ...+ + ...+ ++|+||+.+...|.+|++..+.... .... +.++|+++|+-++..
T Consensus 97 ~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~-~~~~-~a~aA~~VIvEVn~~ 167 (497)
T 2g39_A 97 AINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVG-NSAS-FAIFAKQVIVEINLA 167 (497)
T ss_dssp HHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCB-THHH-HHHHSSEEEEEEETT
T ss_pred HHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcc-cHHH-HHHhCCeEEEEEcCC
Confidence 0 1110 1 1235 6999999999999988765542221 2223 344689988888764
No 32
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=94.99 E-value=0.22 Score=45.80 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=63.6
Q ss_pred HHHHHhcCcCCCEEEECc----ChhHHHHHHHHhch----hhcCCCCCEEEECCcHH---HHHHHHhC------------
Q 029100 38 AYKAVEFVESGMVLGLGT----GSTAKHAVDRIGEL----LRQGKLTNIVGIPTSKK---THEQAVSL------------ 94 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLds----GTT~~~la~~L~~~----~~~~~l~~ltVvTnSl~---~a~~l~~~------------ 94 (199)
|+.|+++|++||+|++.+ |. -..|.+.|.++ ...+...+++++++... ....+...
T Consensus 17 aeEAv~~IkdGd~V~~~Gf~~~G~-P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~~ 95 (514)
T 4eu9_A 17 AETASELIKHGDVVGTSGFTGAGY-PKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTD 95 (514)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBSC-CCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCC
T ss_pred HHHHHHhCCCCCEEEECCCCCCcC-HHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCCC
Confidence 888999999999999974 32 22344444322 11122236888775321 11122211
Q ss_pred ---------CC-ceEe---------c--CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCC
Q 029100 95 ---------GI-PLSD---------L--DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (199)
Q Consensus 95 ---------g~-~v~~---------l--~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~s 151 (199)
|. .... + .....+|+||+.+...|.+|.++.+..-... ..++ +.|+++|+-++..
T Consensus 96 ~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~-~~~~-~~A~~VIvevn~~ 171 (514)
T 4eu9_A 96 ATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNS-QTFL-NLAEKVIIEVNEW 171 (514)
T ss_dssp HHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTH-HHHH-HHCSEEEEEEETT
T ss_pred HHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchH-HHHH-HhCCeEEEEEecC
Confidence 11 1111 1 1224799999999999999887654322222 2334 4689999988764
No 33
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=94.66 E-value=0.063 Score=48.54 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHHhcCcCCCEEEECcCh-hHHHHHHHHhchhhcCCCCCEEEECCcHH----HHH-HHHh------------------
Q 029100 38 AYKAVEFVESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKK----THE-QAVS------------------ 93 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsGT-T~~~la~~L~~~~~~~~l~~ltVvTnSl~----~a~-~l~~------------------ 93 (199)
|+.|+++|+|||+|+++.+. +-..+.+.|.++.+ .++++|+++++.. ... .+..
T Consensus 9 aeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr~~i~ 86 (436)
T 2oas_A 9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQ 86 (436)
T ss_dssp HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHH
T ss_pred HHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHHHHHH
Confidence 56788999999999998551 13467777765421 1248999986421 111 1110
Q ss_pred CCC-ceE--------ec--CCCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeC
Q 029100 94 LGI-PLS--------DL--DSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (199)
Q Consensus 94 ~g~-~v~--------~l--~~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~ 150 (199)
.|. ... .+ ...+.+|+||+.+.-.|.+|++..+... .....+ .++|+++|+-++.
T Consensus 87 ~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~~s~-~~~~~~-a~aA~~VIveVn~ 152 (436)
T 2oas_A 87 SGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISV-EATLAA-CQVAGKIIAHINP 152 (436)
T ss_dssp TTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBC-TTHHHH-HHHCSEEEEEECT
T ss_pred cCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEecCc-CcHHHH-HHhcCeEEEEEcC
Confidence 010 000 01 1336899999999999988876554322 222233 4468888877776
No 34
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=94.62 E-value=0.051 Score=45.81 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhc----CcCCCEEEECcChhHHHHHHHHhc
Q 029100 29 TQDELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 29 ~~~e~K~~IA~~Aa~l----I~dgdtIfLdsGTT~~~la~~L~~ 68 (199)
..++.++.+|+.|+++ +++|++|++..|+|...++++|..
T Consensus 34 ~~~~~~~~lg~~aA~~L~~~l~~~~viGv~wG~T~~~v~~~l~~ 77 (267)
T 3nze_A 34 NEAETLDRVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTR 77 (267)
T ss_dssp CHHHHHHHHHHHHHHHHGGGCCSSCEEEECCSHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHhcCc
Confidence 3455688899988885 688999999999999999999964
No 35
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=94.37 E-value=0.058 Score=49.11 Aligned_cols=110 Identities=15% Similarity=0.006 Sum_probs=66.2
Q ss_pred HHHHHhcCcCCCEEEECcChh-HHHHHHHHhchhhcCCCCCEEEECC-cHHH---H-HHHHh------------------
Q 029100 38 AYKAVEFVESGMVLGLGTGST-AKHAVDRIGELLRQGKLTNIVGIPT-SKKT---H-EQAVS------------------ 93 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsGTT-~~~la~~L~~~~~~~~l~~ltVvTn-Sl~~---a-~~l~~------------------ 93 (199)
|+.|+++|++||+|++..+.- -..+.+.|.++. ..+.++++.+. ++.. . ..+..
T Consensus 14 aeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~--~~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 91 (448)
T 3gk7_A 14 ADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANA--AAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIA 91 (448)
T ss_dssp HHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTG--GGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTTTHHHHH
T ss_pred HHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHH--HhhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHHHHhHHh
Confidence 778899999999999997654 245666665442 12457888876 3221 1 11110
Q ss_pred CCC-ceEe--------cC--CCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCC
Q 029100 94 LGI-PLSD--------LD--SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (199)
Q Consensus 94 ~g~-~v~~--------l~--~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~s 151 (199)
.|. .... +. ..+++|+||+.+...|.+|.+..+.. ...... +.++|+++|+-++..
T Consensus 92 ~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s-~~~~~~-~a~~A~~VI~eVn~~ 158 (448)
T 3gk7_A 92 EGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVS-SDYTMQ-AIKSAKIVLAEVNDQ 158 (448)
T ss_dssp HTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSB-CBTHHH-HHHHCSEEEEEEETT
T ss_pred CCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEecCC-cChHHH-HHHhCCeEEEEeecc
Confidence 010 1111 11 23689999999999998887654422 122223 344688888888753
No 36
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=94.20 E-value=0.071 Score=49.17 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=63.4
Q ss_pred HHHHHhcCcCCCEEEECcCh---hHHHHHHHHhchhh----cC-CCCCEEEECCcH-H--HHHHHHhCC-C---------
Q 029100 38 AYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLR----QG-KLTNIVGIPTSK-K--THEQAVSLG-I--------- 96 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsGT---T~~~la~~L~~~~~----~~-~l~~ltVvTnSl-~--~a~~l~~~g-~--------- 96 (199)
|+.|+++|+|||+|++++.+ +-..+.+.|.++.. ++ ++ ++|++++.- . ....+...| +
T Consensus 8 aeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~-~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~ 86 (506)
T 2nvv_A 8 AEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPF-KIGMFTGASTGARLDGVLAQADAVKFRTPYQSN 86 (506)
T ss_dssp HHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCC-CEEEECSSCCCTTTHHHHHHTTCEEEEESCCCC
T ss_pred HHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCc-eEEEEEecCCCcchhHHhccCCceEEEeeeCCC
Confidence 56788999999999998643 22345555543311 11 33 799998522 1 111222111 0
Q ss_pred ------------ceE--------ecC--CCc-cccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCC
Q 029100 97 ------------PLS--------DLD--SYP-VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (199)
Q Consensus 97 ------------~v~--------~l~--~~~-~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~s 151 (199)
... .+. ..+ ++|+||+-+...|.+|+++.+.... .... +.++|+++|+-++.-
T Consensus 87 ~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~-~~~~-~a~aA~~VIveVn~~ 162 (506)
T 2nvv_A 87 KDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVG-ILPT-ICRLADRIIVELNDK 162 (506)
T ss_dssp HHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCB-THHH-HHHHCSEEEEEEETT
T ss_pred HHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcC-cHHH-HHHhCCcEEEEECCC
Confidence 000 011 225 6999999999999988765442221 2223 344689888888764
No 37
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=94.04 E-value=0.063 Score=48.61 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=64.2
Q ss_pred HHHHHHhcCcCCCEEEECcChh-HHHHHHHHhchhhcCCCCCEEEECCcHH-----HHHHHHh--------C--------
Q 029100 37 AAYKAVEFVESGMVLGLGTGST-AKHAVDRIGELLRQGKLTNIVGIPTSKK-----THEQAVS--------L-------- 94 (199)
Q Consensus 37 IA~~Aa~lI~dgdtIfLdsGTT-~~~la~~L~~~~~~~~l~~ltVvTnSl~-----~a~~l~~--------~-------- 94 (199)
=|+.|+++|++||+|++..+.- -..+.+.|.++. ..+.++++++.... ....+.+ .
T Consensus 17 saeEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~--~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i 94 (434)
T 3eh7_A 17 SAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQA--DLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSRKAV 94 (434)
T ss_dssp CHHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHST--TTC--CEEECCBCTTCC--------------------------
T ss_pred cHHHHHHhCCCcCEEEECCccCCHHHHHHHHHHhH--hhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHHHHHHH
Confidence 3678899999999999997443 356777776542 12347888775311 1001110 0
Q ss_pred --C-CceEe--------cC--CCccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCC
Q 029100 95 --G-IPLSD--------LD--SYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151 (199)
Q Consensus 95 --g-~~v~~--------l~--~~~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~s 151 (199)
| ..... +. ..+++|+||+.+...|.+|.+..+.. ...... +.++++++|+-++..
T Consensus 95 ~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s-~~~~~~-~~~~A~~VI~eVn~~ 162 (434)
T 3eh7_A 95 EENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVS-CDYSKP-AAESAHLVIGEINRQ 162 (434)
T ss_dssp ---CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTB-CTTHHH-HHHHCSEEEEEEETT
T ss_pred HCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEecCc-cchHHH-HHHhCCeEEEEecCC
Confidence 0 00000 11 23689999999999999887654432 222223 345689888888753
No 38
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=93.63 E-value=0.066 Score=45.09 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhc----CcCCCEEEECcChhHHHHHHHHhch
Q 029100 30 QDELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 30 ~~e~K~~IA~~Aa~l----I~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
.++.++.+|+.|+++ +++|++|++..|+|...++++|...
T Consensus 34 ~~~~~~~lg~aaA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~ 77 (267)
T 3kv1_A 34 TNEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIV 77 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHCCCCC
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHhcccc
Confidence 445678899988885 6899999999999999999999643
No 39
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=93.57 E-value=0.19 Score=46.60 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCcCCCEEEECcCh----hHHHHHHHHhchh-hcCCCCCEEEECCcH
Q 029100 34 KKIAAYKAVEFVESGMVLGLGTGS----TAKHAVDRIGELL-RQGKLTNIVGIPTSK 85 (199)
Q Consensus 34 K~~IA~~Aa~lI~dgdtIfLdsGT----T~~~la~~L~~~~-~~~~l~~ltVvTnSl 85 (199)
|..=|+.|+++|+|||+|++++-+ +-..+.+.|.++. .++.++++|+++++.
T Consensus 14 K~~sa~eAv~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~ 70 (531)
T 2ahu_A 14 PVLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTG 70 (531)
T ss_dssp CBCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSC
T ss_pred ccCCHHHHHhhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEecc
Confidence 333467788999999999997622 2456777775431 112335899988754
No 40
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=93.45 E-value=0.086 Score=44.27 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHhc----CcCCCEEEECcChhHHHHHHHHhch
Q 029100 28 LTQDELKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 28 ~~~~e~K~~IA~~Aa~l----I~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
...++.++.+|+.|+++ +++|++|++..|+|...++++|...
T Consensus 37 ~~~~~~~~~lg~~aA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~ 82 (266)
T 3efb_A 37 EDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQA 82 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCC
T ss_pred CChHHHHHHHHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCcc
Confidence 35566778899888885 6899999999999999999999653
No 41
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=93.07 E-value=0.12 Score=41.68 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=43.9
Q ss_pred cccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeCCCCCCCcCCCCcccceEEec
Q 029100 106 VVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVP 170 (199)
Q Consensus 106 ~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~sKf~~~~g~~~~~~piev~~ 170 (199)
.+|+.|+|+++|..+|++..--+...+ ..+..+....+|++|..+||...... +..+|+|...
T Consensus 51 ~Vd~VivGAd~v~~nG~v~nkiGT~~~-Al~Ak~~~vPf~V~a~~~k~~~~~~~-g~~i~iE~r~ 113 (191)
T 1w2w_B 51 PIKAAFVGADRIVRNGDTANKIGTLQL-AVICKQFGIKFFVVAPKTTIDNVTET-GDDIIVEERN 113 (191)
T ss_dssp CEEEEEECCSEECTTSCEEEETTHHHH-HHHHHHHTCEEEEECCGGGBCSSCCS-GGGCCCCBCC
T ss_pred CCCEEEECccEEecCCCEEecccHHHH-HHHHHHcCCCEEEecccceeeeccCC-cceeecccCC
Confidence 499999999999998876433333333 23334557889999999999755443 3577777654
No 42
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=92.46 E-value=0.24 Score=41.44 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhc----CcCCCEEEECcChhHHHHHHHHhc
Q 029100 33 LKKIAAYKAVEF----VESGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 33 ~K~~IA~~Aa~l----I~dgdtIfLdsGTT~~~la~~L~~ 68 (199)
.++.+++.|+++ |+++++|+|..|+|...++++|..
T Consensus 39 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~ 78 (266)
T 2gnp_A 39 LSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHS 78 (266)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhccc
Confidence 477788887764 689999999999999999999964
No 43
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=92.29 E-value=0.49 Score=43.74 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=65.7
Q ss_pred HHHHHhc--CcCCCEEEECcChhH-----HHHHHHHhchhhcCCCCCEEEECCcHHHH--H--HHHhC------------
Q 029100 38 AYKAVEF--VESGMVLGLGTGSTA-----KHAVDRIGELLRQGKLTNIVGIPTSKKTH--E--QAVSL------------ 94 (199)
Q Consensus 38 A~~Aa~l--I~dgdtIfLdsGTT~-----~~la~~L~~~~~~~~l~~ltVvTnSl~~a--~--~l~~~------------ 94 (199)
|+.|+++ |+|||+|++++.+-. ..+.++|.++ .++++|+++++.... . .+...
T Consensus 52 aeEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g 127 (519)
T 2hj0_A 52 IHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLR 127 (519)
T ss_dssp HHHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCH
T ss_pred HHHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCC
Confidence 7788888 999999999876321 2445556442 134899998865321 1 11111
Q ss_pred ---------CC---ce--Ee------cC--CCccccEEEEccCcccCCCCccc--Ccc---hHHHHHHHHHHhcCcEEEE
Q 029100 95 ---------GI---PL--SD------LD--SYPVVDLAIDGADEVDPFMNLVK--GRG---GSLLREKMVEGACKKFVVI 147 (199)
Q Consensus 95 ---------g~---~v--~~------l~--~~~~~D~aFig~~gi~~~~~~~~--~~~---~a~ik~~~i~~~a~k~IlL 147 (199)
|. +. .. +. ..+.+|+||+.+...|.+|+++. +.. ....... +.++|+++|+-
T Consensus 128 ~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~-~a~~A~~VIaE 206 (519)
T 2hj0_A 128 DKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMI-DAKYADQVVIV 206 (519)
T ss_dssp HHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHH-HHHHCSEEEEE
T ss_pred cHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHH-HHhhCCEEEEE
Confidence 11 00 01 11 23689999999999999888662 321 1233333 44568888877
Q ss_pred EeCC
Q 029100 148 VDES 151 (199)
Q Consensus 148 aD~s 151 (199)
++..
T Consensus 207 Vn~~ 210 (519)
T 2hj0_A 207 TDTL 210 (519)
T ss_dssp ESSB
T ss_pred eCCC
Confidence 7653
No 44
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=91.85 E-value=0.2 Score=41.69 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHh----cCcCCCEEEECcChhHHHHHHHHhc
Q 029100 32 ELKKIAAYKAVE----FVESGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 32 e~K~~IA~~Aa~----lI~dgdtIfLdsGTT~~~la~~L~~ 68 (199)
..++.+++.|++ +|+++++|+|..|+|...++++|..
T Consensus 37 ~~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~ 77 (255)
T 2okg_A 37 WVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTP 77 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhhcc
Confidence 346777777776 4688999999999999999999964
No 45
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=91.65 E-value=0.017 Score=50.61 Aligned_cols=48 Identities=8% Similarity=-0.144 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHH-HHHH
Q 029100 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-HEQA 91 (199)
Q Consensus 31 ~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~-a~~l 91 (199)
.++|++||+.|++ +|+ |.|||+.++|++|++.. ++|+|||+... +..+
T Consensus 99 ~~eK~~Ia~~aa~---~~~----d~gtt~~~~a~~Ls~~~------~~tvv~~~~~~~~~~L 147 (338)
T 1stz_A 99 SEADLAVETFKSM---PLA----DPEKVLFLAGNLLARLT------EGYVLIERPNTRDLKI 147 (338)
T ss_dssp CCCCHHHHTCCCT---TBC----CHHHHHHHHHHHHHHHH------TCEEEEECCCGGGCBC
T ss_pred HHHHHHHHHHHhh---cCC----CHHHHHHHHHHHHhccC------CeEEEEeCCHHHHHHh
Confidence 3459999998876 666 99999999999997652 68877777753 4433
No 46
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=91.21 E-value=0.41 Score=43.16 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhch
Q 029100 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 31 ~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
.+..++||+.++++|+||+++=++.|.....++.+|.+.
T Consensus 187 ~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~ 225 (436)
T 2oas_A 187 DAVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGH 225 (436)
T ss_dssp CHHHHHHHHHHHHHCCTTCEEECCSSHHHHHHHHTCTTC
T ss_pred ChHHHHHHHHHHHhcCCCCEEeecCcHHHHHHHHHHhhc
Confidence 556899999999999999999999999999999999765
No 47
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=88.84 E-value=0.4 Score=40.05 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhc----CcCCCEEEEC-cChhHHHHHHHHhch
Q 029100 32 ELKKIAAYKAVEF----VESGMVLGLG-TGSTAKHAVDRIGEL 69 (199)
Q Consensus 32 e~K~~IA~~Aa~l----I~dgdtIfLd-sGTT~~~la~~L~~~ 69 (199)
..++.+++.|+++ |+++++|+|. .|+|...++++|...
T Consensus 38 ~~~~~l~~~aA~~l~~~l~~~~viGla~~G~T~~~~~~~l~~~ 80 (264)
T 2r5f_A 38 SIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQ 80 (264)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEECcchHHHHHHHHhhccc
Confidence 4577888888775 6889999999 999999999999653
No 48
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=86.28 E-value=1.8 Score=39.35 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECC
Q 029100 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (199)
Q Consensus 31 ~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTn 83 (199)
++..++||+.++++|+||.++=++.|.....++.+|.+. +++.+-|-
T Consensus 218 ~~~~~~Ia~~va~~i~dG~~lQ~GiG~ip~Av~~~L~~~------~~lgi~tE 264 (455)
T 3qli_A 218 IPEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDR------NDLGIHTE 264 (455)
T ss_dssp CTHHHHHHHHHHHTCCTTCEEEECSSHHHHHHHHHGGGC------CSBEEBCS
T ss_pred ChHHHHHHHHHHHHhcCCCeEEeccchHHHHHHHhcCcC------CCeEEEcC
Confidence 455789999999999999999999999999999999865 25666553
No 49
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=86.05 E-value=0.71 Score=39.82 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=30.0
Q ss_pred ccccEEEEccCcccCCCCcccCcchHHHHHHHHHHhcCcEEEEEeC
Q 029100 105 PVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150 (199)
Q Consensus 105 ~~~D~aFig~~gi~~~~~~~~~~~~a~ik~~~i~~~a~k~IlLaD~ 150 (199)
+++|+||+-+.-.|..|++..... .... ..++++|+++|+-++.
T Consensus 170 l~~DVAlI~a~~aD~~GN~~~~~~-~~~~-~~~a~aAk~VIveVe~ 213 (317)
T 1poi_A 170 PQVDVAIIHAQQASPDGTVRIWGG-KFQD-VDIAEAAKYTIVTCEE 213 (317)
T ss_dssp CCCSEEEEEEEEECTTCCEECCSC-CTTH-HHHHHHSSEEEEEEEE
T ss_pred CCCcEEEEEeccCCCCceEEEecC-CCch-HHHHhhCCEEEEEEcC
Confidence 479999999999999988755322 1212 2344568888777764
No 50
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=85.27 E-value=0.62 Score=42.69 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHH-------H----HHHhCCC---
Q 029100 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH-------E----QAVSLGI--- 96 (199)
Q Consensus 31 ~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a-------~----~l~~~g~--- 96 (199)
.+.++.||+.|+..|+||++|.|+.| --..++.++++. .++++.|-+-.+- . .+.+.|-
T Consensus 260 ~~~~~~Ia~raA~el~dG~~vnlGIG-iP~~v~~~~~~~------~~l~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~ 332 (481)
T 3k6m_A 260 DNVRERIIKRAALEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLINAGKETV 332 (481)
T ss_dssp --CHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGCCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSBBC
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEccC-HHHHHHhhhccC------CcEEEEECCcEeCCccCCCCCccCcccccCCCceE
Confidence 45588999999999999999999999 444577777543 1455544321000 0 0111121
Q ss_pred ceE------------ecCCCccccEEEEccCcccCCCCcc---------cCcchHHHHHHHHHHhc-CcEEEEEeCCC
Q 029100 97 PLS------------DLDSYPVVDLAIDGADEVDPFMNLV---------KGRGGSLLREKMVEGAC-KKFVVIVDESK 152 (199)
Q Consensus 97 ~v~------------~l~~~~~~D~aFig~~gi~~~~~~~---------~~~~~a~ik~~~i~~~a-~k~IlLaD~sK 152 (199)
.+. ++.+.-++|++|+|+-.||..|.+. .+.+++. - +.+.| +++|+...|+.
T Consensus 333 t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~---D-~~~ga~~k~ii~~~~t~ 406 (481)
T 3k6m_A 333 TVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAM---D-LVSSAKTKVVVTMEHSA 406 (481)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHH---H-HTCCTTSEEEEECCSBC
T ss_pred eccccceecCCHHHeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcch---h-hhccCCceEEEEEeeEc
Confidence 111 1234458999999999999866542 2222221 1 23456 58888888864
No 51
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=83.70 E-value=0.86 Score=41.93 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=66.2
Q ss_pred HHHHHhc--CcCCCEEEECcCh-hHHHHHHHHhchhhcCCCCCEEEECCcHHH-----HHHHHhCCC-------------
Q 029100 38 AYKAVEF--VESGMVLGLGTGS-TAKHAVDRIGELLRQGKLTNIVGIPTSKKT-----HEQAVSLGI------------- 96 (199)
Q Consensus 38 A~~Aa~l--I~dgdtIfLdsGT-T~~~la~~L~~~~~~~~l~~ltVvTnSl~~-----a~~l~~~g~------------- 96 (199)
|+.|+++ |+|||+|+++.+. +-..+.+.|.++.....++++|+++++... +..+. .|.
T Consensus 49 aeEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~-~g~v~r~~~~~~g~~~ 127 (509)
T 1xr4_A 49 LEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIK-NGVVRQIYTSGLRGKL 127 (509)
T ss_dssp HHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHH-TTSEEEEEESBCCHHH
T ss_pred HHHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhh-cCceEEEEEccCCHHH
Confidence 7888899 9999999999764 333555555432111123589999875532 22222 111
Q ss_pred -----------c--eEe------cC--CCccccEEEEccCcccCCCCccc--Cc---chHHHHHHHHHHhcCcEEEEEeC
Q 029100 97 -----------P--LSD------LD--SYPVVDLAIDGADEVDPFMNLVK--GR---GGSLLREKMVEGACKKFVVIVDE 150 (199)
Q Consensus 97 -----------~--v~~------l~--~~~~~D~aFig~~gi~~~~~~~~--~~---~~a~ik~~~i~~~a~k~IlLaD~ 150 (199)
+ +.. ++ ..+++|+||+.+.-.|.+|+++. +. ........ ++.+++++|+-++.
T Consensus 128 r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a-~a~~A~~VIaEVn~ 206 (509)
T 1xr4_A 128 GEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQV-DAQYAKCVVLLTEE 206 (509)
T ss_dssp HHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHH-HHHHCSEEEEEESC
T ss_pred HHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHH-HHhhCCEEEEEeCC
Confidence 0 011 11 34689999999999998887653 21 11222223 44568888887765
No 52
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=83.40 E-value=1.5 Score=39.80 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhch
Q 029100 30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 30 ~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
..+..++||+.++++|+||+++=++.|.....++.+|.+.
T Consensus 191 ~~~~~~~IA~~~a~~i~dG~~lqlGIG~ip~aV~~~L~~~ 230 (448)
T 3gk7_A 191 IGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDK 230 (448)
T ss_dssp CCHHHHHHHHHHHTTCCTTCEEEBCSSHHHHHHHHTCTTC
T ss_pred CCcHHHHHHHHHHHHccCCCEEEeccCcHHHHHHHHhhhc
Confidence 3566899999999999999999999999889999999764
No 53
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=81.84 E-value=1.4 Score=40.42 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=32.1
Q ss_pred HHHHHhcCcCCCEEEECcCh---hHHHHHHHHhchhhcCCCCCEEEECCc
Q 029100 38 AYKAVEFVESGMVLGLGTGS---TAKHAVDRIGELLRQGKLTNIVGIPTS 84 (199)
Q Consensus 38 A~~Aa~lI~dgdtIfLdsGT---T~~~la~~L~~~~~~~~l~~ltVvTnS 84 (199)
++.|+++|+||++|.+++-. .-..++++|.+. + .+++|++.|+
T Consensus 7 ~~eAv~~I~DG~ti~~gGf~~~g~P~~li~al~~~---~-~kdLt~v~~~ 52 (481)
T 3k6m_A 7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKT---G-VKELTAVSNN 52 (481)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH---C-CCSEEEECSC
T ss_pred HHHHHhhCCCCCEEEECCccccCcHHHHHHHHHHc---C-CCceEEEEeC
Confidence 46688889999999998632 347788888643 1 1489999885
No 54
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=81.27 E-value=2.2 Score=38.41 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhch
Q 029100 30 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 30 ~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
..+..++||+.++++|+||.++=++.|.....++..|.+.
T Consensus 195 ~~~~~~~Ia~~~a~~i~dG~~lq~GiG~ip~AV~~~L~~~ 234 (434)
T 3eh7_A 195 IGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDK 234 (434)
T ss_dssp CCHHHHHHHHHHHHTCCTTCEEECCSSHHHHHHHHTTTTC
T ss_pred CChHHHHHHHHHHHhccCCCEEEeccchHHHHHHHHhhhc
Confidence 3466889999999999999999999999999999999753
No 55
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=70.85 E-value=3.6 Score=37.88 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcC------cCCCEEEECcChhHHHHHHHHhch
Q 029100 32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 32 e~K~~IA~~Aa~lI------~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
+..+.||+.|+++| +||+++-++.|.....++.+|.+.
T Consensus 251 ~~~~~IA~~~a~~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~ 294 (519)
T 2hj0_A 251 PKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQ 294 (519)
T ss_dssp HHHHHHHHHHHHHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCCCCCEEEeccChHHHHHHHHHhhh
Confidence 56888999999996 999999999998888899988765
No 56
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=64.78 E-value=4.5 Score=37.29 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHhch-hhcCCCCCEEEECCc-----HHHHHHHHhCCCce--E------
Q 029100 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL-LRQGKLTNIVGIPTS-----KKTHEQAVSLGIPL--S------ 99 (199)
Q Consensus 34 K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~~~-~~~~~l~~ltVvTnS-----l~~a~~l~~~g~~v--~------ 99 (199)
.+.||+.++++|+||+++.++.| .-..++.+|.+. .. .++++.|-+ ....... .+... .
T Consensus 288 ~~~Ia~~~A~~i~dG~~v~lGiG-iP~av~~~l~~~~~~----~~l~~~~E~G~~g~~~~~g~~--~g~~~~~~~~~~~~ 360 (531)
T 2ahu_A 288 RKLVARRALFEMRKGAVGNVGVG-IADGIGLVAREEGCA----DDFILTVETGPIGGITSQGIA--FGANVNTRAILDMT 360 (531)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSS-TTTTHHHHHHHHTCG----GGSEEBCTTSEESCBCC-------CCCBSCSEECCHH
T ss_pred HHHHHHHHHHhccCCCEEEecCc-HHHHHHHHHHhcCCC----CCeEEEEccceecCccCCCcc--ceeEECHHHhcchh
Confidence 78999999999999999999999 555788888762 10 133333311 1000000 11111 1
Q ss_pred ---ecCCCccccEEEEccCcccCCCCcc--------cCcchHHHHHHHHHHhcCcEEEEEeC
Q 029100 100 ---DLDSYPVVDLAIDGADEVDPFMNLV--------KGRGGSLLREKMVEGACKKFVVIVDE 150 (199)
Q Consensus 100 ---~l~~~~~~D~aFig~~gi~~~~~~~--------~~~~~a~ik~~~i~~~a~k~IlLaD~ 150 (199)
.+.+.-++|++|+|+-.||..|.+. .+.+++. - +.+.|+++|++..|
T Consensus 361 ~~f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~---D-~~~gA~~~i~~~~~ 418 (531)
T 2ahu_A 361 SQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFI---D-ISATSKKIIFCGTL 418 (531)
T ss_dssp HHHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHH---H-HHTTCSEEEEECCS
T ss_pred hhhheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcch---h-hhcCCCeEEEEecc
Confidence 1123457899999999999876542 2222221 1 23467888877753
No 57
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=60.95 E-value=9.5 Score=31.24 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCEEEECcChhHHHHHHHHhchhhcC--CCCCEEEE
Q 029100 48 GMVLGLGTGSTAKHAVDRIGELLRQG--KLTNIVGI 81 (199)
Q Consensus 48 gdtIfLdsGTT~~~la~~L~~~~~~~--~l~~ltVv 81 (199)
+.+|.|.+|+|...+.+.|.+..+.+ +..+++++
T Consensus 34 ~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~ 69 (266)
T 1fs5_A 34 PFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTF 69 (266)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEE
T ss_pred ceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEE
Confidence 78999999999999999997531111 12367766
No 58
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=59.04 E-value=7 Score=35.84 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcC------cCCCEEEECcChhHHHHHHHHhch
Q 029100 32 ELKKIAAYKAVEFV------ESGMVLGLGTGSTAKHAVDRIGEL 69 (199)
Q Consensus 32 e~K~~IA~~Aa~lI------~dgdtIfLdsGTT~~~la~~L~~~ 69 (199)
+.+++||+.|+++| +||+++=++.|.....++.+|++.
T Consensus 248 ~~~~~IA~~~a~~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~ 291 (509)
T 1xr4_A 248 PRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDK 291 (509)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCCEEEeccChHHHHHHHHhhhh
Confidence 56899999999999 999999999998888899999765
No 59
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=57.95 E-value=1.5 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCcCCCEEEECcChhHHH
Q 029100 34 KKIAAYKAVEFVESGMVLGLGTGSTAKH 61 (199)
Q Consensus 34 K~~IA~~Aa~lI~dgdtIfLdsGTT~~~ 61 (199)
+|.+=+.+-+||.+|-..|.-+|||+++
T Consensus 36 ~r~vKK~~~~LV~Eg~leywSSGSTTmy 63 (78)
T 1ucr_A 36 QREVKKILTALVNDEVLEYWSSGSTTMY 63 (78)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhcCceEEEecCCeEEE
Confidence 5666677777999999999999988764
No 60
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=54.28 E-value=12 Score=29.93 Aligned_cols=35 Identities=31% Similarity=0.282 Sum_probs=26.2
Q ss_pred HHHHHHHHHh----cCcC-CCEEEECcChhHHHHHHHHhc
Q 029100 34 KKIAAYKAVE----FVES-GMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 34 K~~IA~~Aa~----lI~d-gdtIfLdsGTT~~~la~~L~~ 68 (199)
++.+++.|++ .+++ |++|.|.+|+|...+.++|.+
T Consensus 10 ~~~l~~~aA~~l~~~i~~~~~~i~ls~G~T~~~~~~~L~~ 49 (234)
T 2ri0_A 10 KTEGSKVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRE 49 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECCSSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCHHHHHHHHHh
Confidence 3445555555 4453 579999999999999999974
No 61
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=52.31 E-value=45 Score=23.95 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEe
Q 029100 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSD 100 (199)
Q Consensus 48 gdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~ 100 (199)
+.++.+|.|..-..+++.|.+. + .+++++..+......+...|..++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~---g--~~v~vid~~~~~~~~~~~~g~~~i~ 55 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS---D--IPLVVIETSRTRVDELRERGVRAVL 55 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHcCCCEEE
Confidence 6799999999999999999754 1 2799999999888777777876653
No 62
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=51.86 E-value=18 Score=33.02 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhc----CcCC------CEEEECcChhHHHHHHHHhchhhcCCCCCEEEECC
Q 029100 31 DELKKIAAYKAVEF----VESG------MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (199)
Q Consensus 31 ~e~K~~IA~~Aa~l----I~dg------dtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTn 83 (199)
.+..++||+.++++ |++| .++=++.|.....++.+|.+. .+.++.+-|-
T Consensus 230 ~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~----~~~~l~~~se 288 (497)
T 2g39_A 230 DGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES----PFENLTMYSE 288 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS----SCCSEEEECS
T ss_pred ChHHHHHHHHHHHHHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhc----ccccceEEee
Confidence 55689999999995 5677 999999999999999999764 1225555554
No 63
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=51.73 E-value=20 Score=29.93 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=18.6
Q ss_pred CEEEECcChhHHHHHHHHhc
Q 029100 49 MVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 49 dtIfLdsGTT~~~la~~L~~ 68 (199)
.+|+|.+|+|...+.+.|.+
T Consensus 35 ~~lglsgGsTp~~~~~~L~~ 54 (289)
T 1ne7_A 35 FTLGLPTGSTPLGCYKKLIE 54 (289)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred EEEEEcCCccHHHHHHHHHh
Confidence 68999999999999999974
No 64
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=51.14 E-value=38 Score=30.79 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHh----------cCcCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECC
Q 029100 32 ELKKIAAYKAVE----------FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT 83 (199)
Q Consensus 32 e~K~~IA~~Aa~----------lI~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTn 83 (199)
+.-++||+.+++ +++||.++=++.|.....++..|.+.. ++++.+-|.
T Consensus 237 ~~~~~Ia~~ia~~i~~e~~ag~l~~dG~~lQ~GiG~ip~AV~~~L~~~~----~~~l~~~te 294 (514)
T 4eu9_A 237 ETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGP----FENLVGYSE 294 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCTTCCCEECCCSHHHHHHHHHHHHSS----CCSEEEESS
T ss_pred hhhhhHHHHHHHHHHHHHhhccccCCCceeccCCCchHHHHHHHHhhcC----CcCceEeec
Confidence 345667766665 789999999999999999999997631 125665553
No 65
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=49.02 E-value=22 Score=32.52 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhc----CcCC------CEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCc
Q 029100 31 DELKKIAAYKAVEF----VESG------MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS 84 (199)
Q Consensus 31 ~e~K~~IA~~Aa~l----I~dg------dtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnS 84 (199)
.+.+++||+.|+++ |++| .++=++.|.....++.+|.+.. .++++.+-|-.
T Consensus 225 ~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~~---~~~~l~i~te~ 285 (506)
T 2nvv_A 225 DPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNP---DIPAFNMYTEV 285 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHCT---TSCCEEEECSE
T ss_pred ChHHHHHHHHHHHHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhcC---CcccceEEecc
Confidence 55689999999995 4456 9999999999999999997641 01255555443
No 66
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=47.88 E-value=14 Score=29.63 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHHHHHHHh----cCc--CCCEEEECcChhHHHHHHHHhc
Q 029100 35 KIAAYKAVE----FVE--SGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 35 ~~IA~~Aa~----lI~--dgdtIfLdsGTT~~~la~~L~~ 68 (199)
+.+|+.|++ .++ ++.+|.|.+|+|...+.+.|.+
T Consensus 10 ~~l~~~aA~~l~~~i~~~~~~~i~lsgG~T~~~~~~~L~~ 49 (242)
T 2bkx_A 10 EELSQIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIR 49 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHHH
Confidence 345555544 444 4799999999999999999974
No 67
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=47.46 E-value=21 Score=28.86 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCcC--CCEEEECcChhHHHHHHHHhc
Q 029100 33 LKKIAAYKAVEFVES--GMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 33 ~K~~IA~~Aa~lI~d--gdtIfLdsGTT~~~la~~L~~ 68 (199)
.=+..|+..++.+++ ..+|.|-+|||...+.+.|.+
T Consensus 13 l~~~aA~~i~~~i~~~~~~~l~lsgGstp~~~~~~L~~ 50 (238)
T 1y89_A 13 VVKSLADDMLAYSQQGQPVHISLSGGSTPKMLFKLLAS 50 (238)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEEECCSHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHh
Confidence 334444444455555 779999999999999999965
No 68
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=42.29 E-value=71 Score=23.89 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCcC----CCEEEE---CcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEec
Q 029100 32 ELKKIAAYKAVEFVES----GMVLGL---GTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDL 101 (199)
Q Consensus 32 e~K~~IA~~Aa~lI~d----gdtIfL---dsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l 101 (199)
+.|+..|+.+++.++. +++-+. ..+..+-..+..+.... +.+++||+......+...|++++.+
T Consensus 52 ~~~r~rGr~gL~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~------~~~lvTnD~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 52 PLRRAKGRRGLETLERLREAAPLEVLETTPKGESVDEKLLFLARDL------EAALVTNDHALLQMARIYGVKALSI 122 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHT------TCEEEESCHHHHHHHHHTTCCEEEH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHh------CCEEEeCCHHHHHHHHHCCCeEEeh
Confidence 4567778888876531 224444 33455555566665442 6799999999999998899998765
No 69
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.89 E-value=1e+02 Score=22.77 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=38.5
Q ss_pred cCCCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceE
Q 029100 46 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (199)
Q Consensus 46 ~dgdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~ 99 (199)
..+.++++|.|..-..+++.|.+.. + .+++++..+......+...|..+.
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~--g--~~V~vid~~~~~~~~~~~~g~~~~ 87 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARY--G--KISLGIEIREEAAQQHRSEGRNVI 87 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHH--C--SCEEEEESCHHHHHHHHHTTCCEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcc--C--CeEEEEECCHHHHHHHHHCCCCEE
Confidence 4567999999999999999996430 1 279999998887776776777654
No 70
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=37.71 E-value=11 Score=30.96 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.5
Q ss_pred cCCCEEEECcChhHHHHHHHHhc
Q 029100 46 ESGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 46 ~dgdtIfLdsGTT~~~la~~L~~ 68 (199)
++.-+|.|-+|+|-..+-+.|.+
T Consensus 38 ~~~~~l~LsgGstP~~~y~~L~~ 60 (251)
T 3tx2_A 38 RGKAMIVLTGGGTGIALLKHLRD 60 (251)
T ss_dssp HSCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHh
Confidence 44568999999999999999875
No 71
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=35.74 E-value=12 Score=30.74 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.5
Q ss_pred cCCCEEEECcChhHHHHHHHHhc
Q 029100 46 ESGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 46 ~dgdtIfLdsGTT~~~la~~L~~ 68 (199)
++.-+|.|-+|+|-..+-+.|.+
T Consensus 38 ~~~~~l~LsgGstP~~~y~~L~~ 60 (248)
T 3oc6_A 38 RGQATIVLTGGGTGIGLLKRVRE 60 (248)
T ss_dssp HSCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHh
Confidence 44568999999999999999975
No 72
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=34.34 E-value=21 Score=29.58 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred CCCEEEECcChhHHHHHHHHh
Q 029100 47 SGMVLGLGTGSTAKHAVDRIG 67 (199)
Q Consensus 47 dgdtIfLdsGTT~~~la~~L~ 67 (199)
+.-+|.|-+|+|-..+-+.|.
T Consensus 36 ~~~~l~LsgGstP~~ly~~L~ 56 (266)
T 3eb9_A 36 WPLSIALAGGSTPKMTYARLH 56 (266)
T ss_dssp CSEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHHH
Confidence 446899999999999999997
No 73
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=33.56 E-value=25 Score=29.93 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHH-hcCcCCCEEEECcCh---hHHHHHHHHhchhhcCCCCCEEEECCc
Q 029100 38 AYKAV-EFVESGMVLGLGTGS---TAKHAVDRIGELLRQGKLTNIVGIPTS 84 (199)
Q Consensus 38 A~~Aa-~lI~dgdtIfLdsGT---T~~~la~~L~~~~~~~~l~~ltVvTnS 84 (199)
++.|+ ++|+|||+|++++-+ +-..+.+.|.+. + ++++|++.++
T Consensus 6 a~eAv~~~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~-~~dLtlv~~~ 52 (317)
T 1poi_A 6 LKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQ---G-ITDLTGLGGA 52 (317)
T ss_dssp HHHHHHHHCCTTCEEEECSBTTBSCCHHHHHHHHHT---T-CCCEEEECSE
T ss_pred HHHHHHhhCCCCCEEEECCccccCcHHHHHHHHHhC---C-CCCEEEEEEC
Confidence 44566 889999999998632 356778888643 1 2478888553
No 74
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=26.59 E-value=55 Score=20.79 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.4
Q ss_pred CcCCCEEEECcChhHHHHHHHHh
Q 029100 45 VESGMVLGLGTGSTAKHAVDRIG 67 (199)
Q Consensus 45 I~dgdtIfLdsGTT~~~la~~L~ 67 (199)
+.+|+..-+..|+|...+++.+.
T Consensus 7 ~p~g~~~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 7 TPKGEIKRLPQGATALDFAYSLH 29 (73)
T ss_dssp CTTCCEEEECTTCBHHHHHHHHC
T ss_pred cCCCCEEEcCCCCcHHHHHHHHh
Confidence 45799999999999999999984
No 75
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.70 E-value=44 Score=24.26 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=27.9
Q ss_pred CCCcCCChHHHHHHHHHHHHhcCcCCCEEEECcChhHHHHHHHHh
Q 029100 23 PPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIG 67 (199)
Q Consensus 23 ~~~~~~~~~e~K~~IA~~Aa~lI~dgdtIfLdsGTT~~~la~~L~ 67 (199)
|+++-...++-|++|-..|.+++... .++|+..+|+...
T Consensus 5 ~~~~~~~~~~~r~~Il~aA~~lf~~~------~~~t~~~Ia~~ag 43 (190)
T 2v57_A 5 PSIESGARERTRRAILDAAMLVLADH------PTAALGDIAAAAG 43 (190)
T ss_dssp --------CHHHHHHHHHHHHHHTTC------TTCCHHHHHHHHT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHc------CCCCHHHHHHHhC
Confidence 44455555677999999999999887 8999999999885
No 76
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=24.64 E-value=55 Score=26.87 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.8
Q ss_pred CCEEEECcChhHHHHHHHHhc
Q 029100 48 GMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 48 gdtIfLdsGTT~~~la~~L~~ 68 (199)
..+|.|-+|+|...+.+.|.+
T Consensus 38 ~~~l~LsgGstp~~ly~~L~~ 58 (267)
T 3css_A 38 PVVLALSGGSTPKRLYEELHE 58 (267)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 579999999999999998864
No 77
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=24.42 E-value=41 Score=27.22 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.3
Q ss_pred CCEEEECcChhHHHHHHHHhc
Q 029100 48 GMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 48 gdtIfLdsGTT~~~la~~L~~ 68 (199)
..+|.|.+|+|...+.+.|.+
T Consensus 46 ~~~l~LsgGsTp~~ly~~L~~ 66 (232)
T 1vl1_A 46 KIFVVLAGGRTPLPVYEKLAE 66 (232)
T ss_dssp CEEEEECCSTTHHHHHHHHTT
T ss_pred CeEEEEcCCccHHHHHHHHHH
Confidence 679999999999999999975
No 78
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.78 E-value=1.9e+02 Score=20.15 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceE
Q 029100 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (199)
Q Consensus 48 gdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~ 99 (199)
..++.+|.|..-..+++.|.+. + .+++++..+......+...+..++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~---g--~~V~~id~~~~~~~~~~~~~~~~~ 53 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA---G--KKVLAVDKSKEKIELLEDEGFDAV 53 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C--CeEEEEECCHHHHHHHHHCCCcEE
Confidence 4689999999999999999754 2 278999999887777766676554
No 79
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=23.71 E-value=51 Score=22.29 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred cCcCCCEEEECcChhHHHHHHHHhc
Q 029100 44 FVESGMVLGLGTGSTAKHAVDRIGE 68 (199)
Q Consensus 44 lI~dgdtIfLdsGTT~~~la~~L~~ 68 (199)
+..+|+.+-|..|+|...+|..+..
T Consensus 11 ~tP~G~~~~lp~GaT~~D~A~~Ih~ 35 (78)
T 3hvz_A 11 FTPKGDVISLPIGSTVIDFAYAIHS 35 (78)
T ss_dssp ECTTSCEEEEETTCBHHHHHHHHCH
T ss_pred ECCCCCEEEecCCCCHHHHHHHhhh
Confidence 4578999999999999999999854
No 80
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=23.24 E-value=1.8e+02 Score=25.37 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=39.3
Q ss_pred CCEEEECcChhHHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceE
Q 029100 48 GMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLS 99 (199)
Q Consensus 48 gdtIfLdsGTT~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~ 99 (199)
+.+|.+|.|..-..+++.|.+. + .++++|..+......+...|..++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~---g--~~vvvId~d~~~v~~~~~~g~~vi 51 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS---G--VKMVVLDHDPDHIETLRKFGMKVF 51 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEECCHHHHHHHHHTTCCCE
T ss_pred CeEEEECCCHHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHhCCCeEE
Confidence 5699999999999999999754 1 279999999998887877887765
No 81
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=21.01 E-value=2.3e+02 Score=23.87 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=34.8
Q ss_pred CcCCCEEEECc-Chh---HHHHHHHHhchhhcCCCCCEEEECCcHHHHHHHHhCCCceEecCC-------------Cccc
Q 029100 45 VESGMVLGLGT-GST---AKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDS-------------YPVV 107 (199)
Q Consensus 45 I~dgdtIfLds-GTT---~~~la~~L~~~~~~~~l~~ltVvTnSl~~a~~l~~~g~~v~~l~~-------------~~~~ 107 (199)
+++|++|.+-+ |.. ..++|+.+.- ..+.++..+..-...+.+.|..+++..+ ...+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-------~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~ 255 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGA-------AVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 255 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-------SEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-------CeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCC
Confidence 67898887744 332 2333333321 1355565666655666667876554321 1147
Q ss_pred cEEEEccC
Q 029100 108 DLAIDGAD 115 (199)
Q Consensus 108 D~aFig~~ 115 (199)
|+.|..+.
T Consensus 256 Dvvid~~G 263 (398)
T 1kol_A 256 DCAVDAVG 263 (398)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 77776554
Done!