RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029100
(199 letters)
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 359 bits (924), Expect = e-127
Identities = 168/199 (84%), Positives = 177/199 (88%), Gaps = 6/199 (3%)
Query: 1 MAIA----ISAEKPSSVETGLSPLSSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 56
MAIA I +EK S S LS PVILTQDELKKIAAYKAVEFVESGMVLGLGTG
Sbjct: 1 MAIAYPPFIGSEKDSMEVG--SMLSPSSPVILTQDELKKIAAYKAVEFVESGMVLGLGTG 58
Query: 57 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADE 116
STAKHAVDRIGELLRQGKL NI+GIPTSKKTHEQAVSLGIPLSDLDS+PVVDLAIDGADE
Sbjct: 59 STAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADE 118
Query: 117 VDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFT 176
VDP +NLVKGRGGSLLREKM+EGACKKFVVIVDESKLV H+GGSGLAMPVEVVP+CWKFT
Sbjct: 119 VDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFT 178
Query: 177 AKRLQDLFEDCGCVAKLRT 195
A++LQ LFE GCVAKLRT
Sbjct: 179 AEKLQSLFEYAGCVAKLRT 197
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 233 bits (597), Expect = 1e-78
Identities = 93/166 (56%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92
LK+ AA AV++VE GMV+GLGTGST + ++ +GE +R+ L NIVG+PTS +T E A
Sbjct: 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEGL-NIVGVPTSFQTEELAR 59
Query: 93 SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152
LGIPL+DLD P +DLAIDGADEVDP +NL+KG GG+LLREK+V A KKF+VI DESK
Sbjct: 60 ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119
Query: 153 LVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGA 198
LV LG L PVEVVP+ W + A+ L+ L G LR
Sbjct: 120 LVERLGEFPL--PVEVVPFAWSYVARELEKL----GGKPVLREGSG 159
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 228 bits (585), Expect = 1e-76
Identities = 85/169 (50%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
TQDELKK AA A E+VE GM++GLGTGSTA + +D +GE +++G I G+PTS+ +
Sbjct: 2 TQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGL--IIGGVPTSEAST 59
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
E A LGIPL DL+ +DL +DGADE+DP +NL+KG G +L REK+V A K+F+ IV
Sbjct: 60 ELAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIV 119
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG 197
DESKLV LG L PVEV+P+ A+ L+ L G +LR
Sbjct: 120 DESKLVDVLGKFPL--PVEVIPFARSAVARELEKL----GGQPELRMDE 162
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 228 bits (583), Expect = 2e-76
Identities = 92/162 (56%), Positives = 115/162 (70%), Gaps = 7/162 (4%)
Query: 33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAV 92
LK+ AA A E+VE GMV+GLGTGST + ++ +GE ++Q L +IVG+PTSK+T E A
Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELAR 59
Query: 93 SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESK 152
LGIPLS LD P +DLAIDGADEVDP + L+KG GG+LLREK+V A K+F+VI DESK
Sbjct: 60 ELGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESK 119
Query: 153 LVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
LV LG L PVEVVP+ WK A++L+ L G LR
Sbjct: 120 LVDKLGKFPL--PVEVVPFAWKAVARKLEKL----GGEPTLR 155
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 205 bits (523), Expect = 3e-67
Identities = 86/168 (51%), Positives = 113/168 (67%), Gaps = 8/168 (4%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTH 88
QDELKK AA A+E+V+ GMV+GLGTGSTA + ++ +G ++ +I G+PTS +T
Sbjct: 2 DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGEL--DIGGVPTSFQTE 59
Query: 89 EQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIV 148
E A LGIP+S L+ +DLAIDGADEVDP +NL+KG GG+LLREK+V A K+F+VIV
Sbjct: 60 ELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIV 119
Query: 149 DESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT 196
DESKLV LG L PVEV+P+ ++L+ L G LR
Sbjct: 120 DESKLVEVLGKFPL--PVEVIPFARSAVLRKLEKL----GGKPTLREG 161
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 175 bits (446), Expect = 3e-56
Identities = 72/122 (59%), Positives = 85/122 (69%), Gaps = 6/122 (4%)
Query: 78 IVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMV 137
IVG+PTS +T E A LGIPLSDLD +DLAIDGADEVDP +NL+KG GG+LLREK+V
Sbjct: 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIV 60
Query: 138 EGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG 197
A KKF+VIVDESKLV LG L PVEVVP+ W + +RL++L G KLR
Sbjct: 61 ASAAKKFIVIVDESKLVDVLGKFPL--PVEVVPFAWSYVLRRLEEL----GGEPKLRMGE 114
Query: 198 AE 199
Sbjct: 115 GG 116
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 133 bits (336), Expect = 4e-39
Identities = 57/151 (37%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQA 91
LK + + + M LG+GTGST + + ++ +L+++ + NI G+ TS K A
Sbjct: 6 ALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLA 64
Query: 92 VSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDES 151
LGI + +++ +DLAIDGADEVDP +N++KG GG+L REK+++ +FVV+VDE+
Sbjct: 65 KELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDET 124
Query: 152 KLVPHLGGSGLAMPVEVVPYCWKFTAKRLQD 182
K+V +LG + +PVEV + W ++++
Sbjct: 125 KIVQYLGET-FKLPVEVDKFNWYHILRKIES 154
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 39.6 bits (92), Expect = 3e-04
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 36/115 (31%)
Query: 49 MVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT-------------HEQAVSLG 95
MV+GLGTGST + +GE L++G++++IVG PT ++ A
Sbjct: 22 MVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHD 81
Query: 96 IPLSD----------------------LDSYPVVDLAIDGAD-EVDPFMNLVKGR 127
I + LD +DLA+DGA + LV GR
Sbjct: 82 IIPASNVHYVDTSLPIEKACEKYEREILDQVDAIDLAVDGAGYRAGTVIVLVDGR 136
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain. The sensor
domains of the DeoR are catalytically inactive versions
of the ISOCOT fold, but retain the substrate binding
site. DeorC senses diverse sugar derivatives such as
deoxyribose nucleoside (DeoR), tagatose phosphate
(LacR), galactosamine (AgaR), myo-inositol (Bacillus
IolR) and L-ascorbate (UlaR).
Length = 162
Score = 37.5 bits (88), Expect = 0.001
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 36/147 (24%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT----SKKT 87
E K+ A A +E G + L G+T + + +TN + S+K
Sbjct: 5 EEKRRIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVITN--SLNIANELSEKP 62
Query: 88 HEQAVSLG-------------IPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGG---SL 131
+ + + LG + L + VD A GA+ +D GG S
Sbjct: 63 NIEVILLGGEVRPKTGSFVGPLAEEFLRQF-NVDKAFIGANGIDL-------EGGLTTSD 114
Query: 132 LRE-----KMVEGACKKFVVIVDESKL 153
E M+E A + ++ D SK
Sbjct: 115 EEEAEVKRAMIERARRVILL-ADSSKF 140
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 37.2 bits (87), Expect = 0.003
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 30/144 (20%)
Query: 32 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPT----SKKT 87
E K+ A A +E G + L G+T + + +TN + +K
Sbjct: 76 EEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPDDNNLTVITN--SLNIAAALLEKP 133
Query: 88 HEQAVSLG-------------IPLSDLDSYPVVDLAIDGADEVDP---FM--NLVKGRGG 129
+ + + LG + L + D A GAD +D N +
Sbjct: 134 NIEVILLGGTVRKKSGSFVGPLAEEFLRQF-NFDKAFIGADGIDLEGGLTTFNEEEAE-- 190
Query: 130 SLLREKMVEGACKKFVVIVDESKL 153
++ M+E A + ++ D SK
Sbjct: 191 --VKRAMIEAAREVILL-ADSSKF 211
>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase
(NAD(+)). Members of this protein family are the
eukaryotic enzyme, glycerol-3-phosphate dehydrogenase
(NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is
defined as sn-glycerol 3-phosphate + NAD(+) = glycerone
phosphate + NADH. Note the very similar reactions of
enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to
families of proteins in the bacteria.
Length = 342
Score = 31.2 bits (71), Expect = 0.31
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
A K V + +G V GLG G AK AV R G LL K + PT + T
Sbjct: 203 ALKNVVAIAAGFVDGLGWGDNAKAAVMRRG-LLEMIKFARMFF-PTGEVT 250
>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate
dehydrogenase C-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
C-terminal substrate-binding domain.
Length = 145
Score = 30.2 bits (69), Expect = 0.39
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 37 AAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG 80
A K V + +G++ GLG G K A+ G L+ K +G
Sbjct: 10 GALKNVIAIAAGILDGLGFGDNTKAALITRG-LMEMIKFGAALG 52
>gnl|CDD|224394 COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine
biosynthesis [Coenzyme metabolism].
Length = 337
Score = 28.8 bits (65), Expect = 1.7
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 27 ILTQDEL---KKIAAYKAVEFVESGMV------LGLGTGSTAK-HAVDRIGELLRQGKLT 76
+ + +E+ + Y +E + G + + L G AK +AVD+ E L +
Sbjct: 135 VPSPEEIDEALALVGYDKLELDDRGTLVLKKPGMKLDLGGIAKGYAVDKAAEALEAEGIK 194
Query: 77 N 77
+
Sbjct: 195 S 195
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 28.7 bits (64), Expect = 2.0
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 88 HEQAV-SLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVV 146
H Q + LS + ++ + GA E++ + K S + + + K
Sbjct: 158 HFQDLHDTPRGLSPFLPWGPINQRVLGAKEIEYETH--KEENYSPSLKSPKKESQGKVDE 215
Query: 147 IVDESKLVP 155
+ D S+ P
Sbjct: 216 LKDHSEKHP 224
>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase. Coenzyme A (CoA)
transferases belong to an evolutionary conserved family
of enzymes catalyzing the reversible transfer of CoA
from one carboxylic acid to another. They have been
identified in many prokaryotes and in mammalian tissues.
The bacterial enzymes are heterodimer of two subunits (A
and B) of about 25 Kd each while eukaryotic SCOT consist
of a single chain which is colinear with the two
bacterial subunits.
Length = 212
Score = 28.3 bits (64), Expect = 2.4
Identities = 25/152 (16%), Positives = 37/152 (24%), Gaps = 45/152 (29%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQG------------------------ 73
A +A ++ G + LG I L+RQG
Sbjct: 2 AAEAAREIKDGDTVALGGFGGLPTPAALILALIRQGPKDLTLISENGGLGLGLLAGEGDV 61
Query: 74 KLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLV--------- 124
K + + I L + D GA V F L
Sbjct: 62 KKIIAGHVGLTPLLGRLYFDGEIESFLLPQGGLADRLRAGAAGVPGFGTLAGLGTDVDPR 121
Query: 125 --------KGRGGSLLREKMVEGACKKFVVIV 148
G GG+ L A + V ++
Sbjct: 122 YEGGKVRPFGMGGAYLLVP----AIRPDVALI 149
>gnl|CDD|223216 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only
IMP cyclohydrolase domain in Aful) [Nucleotide transport
and metabolism].
Length = 515
Score = 28.0 bits (63), Expect = 3.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Query: 28 LTQDELKK-IAAYKAVEFVES--------GMVLGLGTGST-----AKHAVDRIGE 68
T+ EL+ + A+K V+ V+S G +G+G G A+ A ++ G+
Sbjct: 395 PTEQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGD 449
>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated.
Length = 275
Score = 27.6 bits (62), Expect = 3.8
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 51 LGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGI-----PLSDLDSYP 105
LGL GS L +G ++ + G ++ ++A+ LG+ +L
Sbjct: 8 LGLMGGSLGL-------ALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKKCD 60
Query: 106 VVDLAI 111
V+ LAI
Sbjct: 61 VIFLAI 66
>gnl|CDD|226134 COG3607, COG3607, Predicted lactoylglutathione lyase [General
function prediction only].
Length = 133
Score = 27.0 bits (60), Expect = 4.5
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 109 LAIDGADEVDPFMNLVKGRGGSLLREKMVEG 139
L+ +EVD ++ GG E EG
Sbjct: 77 LSAGSREEVDELVDKALEAGGKPANEPQDEG 107
>gnl|CDD|217959 pfam04198, Sugar-bind, Putative sugar-binding domain. This
probable domain is found in bacterial transcriptional
regulators such as DeoR and SorC. These proteins have
an amino-terminal helix-turn-helix pfam00325 that binds
to DNA. This domain is probably the ligand regulator
binding region. SorC is regulated by sorbose and other
members of this family are likely to be regulated by
other sugar substrates.
Length = 255
Score = 27.2 bits (61), Expect = 6.4
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 24 PPVILTQDELKKIAAYKAVEF---VESGMVLGLGTGSTAKHAVDRI 66
P D L+ + A ++ G V+G+G G T + +
Sbjct: 26 PDDADEDDTLEALGRAAAQYLSSLLKDGDVVGVGWGRTLSAVAEAL 71
>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 365
Score = 27.3 bits (61), Expect = 6.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 33 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIG--ELLRQGKL 75
LK I A A G GLG G+ K A+ RIG E+ GK+
Sbjct: 213 LKNIIALAA------GFCDGLGLGTNTKSAIIRIGLEEMKLFGKI 251
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 26.7 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 125 KGRGGSLLREKMVEGACKKFVVIVDESKLVPH-LGGSGLAMPVEVV 169
KG+GG + E E K V + K H LG +GL+M E+
Sbjct: 302 KGKGGKFIEEGQSEKGGKVGVNLFGGLKAKGHPLGATGLSMIYEIT 347
>gnl|CDD|217027 pfam02424, ApbE, ApbE family. This prokaryotic family of
lipoproteins are related to ApbE from Salmonella
typhimurium. ApbE is involved in thiamine synthesis.
More specifically is may be involved in the conversion
of aminoimidazole ribotide (AIR) to
4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Length = 255
Score = 26.8 bits (60), Expect = 8.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAK-HAVDRIGELLRQGKLTN 77
+L V GM L LG AK +AVDR+ E+LR +TN
Sbjct: 89 RKLVLDDEGGTVALKRPGMQLDLG--GIAKGYAVDRVAEVLRAAGITN 134
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional.
Length = 485
Score = 27.0 bits (60), Expect = 8.8
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 69 LLRQGKLTNIVG-IPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKG 126
L++ G L ++ G +P + K H V +P YP V I+ A++V F +L G
Sbjct: 16 LIKTGGLADVAGALPAALKAHGVEVRTLVP-----GYPAVLAGIEDAEQVHSFPDLFGG 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.135 0.389
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,230,954
Number of extensions: 977161
Number of successful extensions: 1039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 39
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)