RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029100
(199 letters)
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 140 bits (353), Expect = 2e-43
Identities = 65/154 (42%), Positives = 103/154 (66%), Gaps = 6/154 (3%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+ +E+KKIAA +A++F+E MV+GLGTGST + + +GE L++G++++IVG+PTS +
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
A+ IP++ LD +D+A+DGADEVDP +NL+KGRG +L EK++E F+V+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQ 181
VDE KLV +L ++V + K+L+
Sbjct: 121 VDERKLVDYLD------IADIVIVGTREGVKKLE 148
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 122 bits (307), Expect = 1e-36
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 50 VLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDL 109
++G+GTGSTA H +D +G + K + +S + E+ SLGI + DL+ + +
Sbjct: 1 IVGVGTGSTAAHFIDALGTM----KGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGI 56
Query: 110 AIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVV 169
+DGADE++ M ++KG G +L REK++ +KF+ I D SK V L G + +
Sbjct: 57 YVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILANRGADVALIGT 116
Query: 170 PYCWK 174
P K
Sbjct: 117 PDGVK 121
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 122 bits (306), Expect = 3e-36
Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQ 90
+ KK AA+ A+ +V+ GMV+GLGTGSTA++AV + LR+G+L +VG+PTS+ T E
Sbjct: 4 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 63
Query: 91 AVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDE 150
A VDLAIDGADE+ P + L+KG GG+LLREK+VE K+F+VI D
Sbjct: 64 AKR-EGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 122
Query: 151 SKLVPHLGGSGL-AMPVEVVPYCWKFT 176
+K VP L G+ + P+ +
Sbjct: 123 TKKVPVLLFVGMATRALVAGPFGVEEL 149
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 115 bits (289), Expect = 8e-34
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 28 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKT 87
+ Q E+KK+AA A+++V++ ++G+G+GST ++ + K + SK++
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEAL----GTIKDKIQGAVAASKES 56
Query: 88 HEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVI 147
E GI + + + +D+ +DGADE++P ++KG G +L REK+V KKF+ I
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 148 VDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQ 181
VD SK V L +VV AK +
Sbjct: 117 VDSSKQVDVLFAL---RGADVVIVGTPEGAKVID 147
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 36.2 bits (84), Expect = 2e-04
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 159 GSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
GS +PVEV+P ++L L G + R
Sbjct: 1 GSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYR 32
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Length = 74
Score = 33.2 bits (76), Expect = 0.002
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGAE 199
+PVE+VP+ ++ T K + DL G +LR G E
Sbjct: 5 VPVEIVPFGYRATLKAIADL----GGEPELRMDGDE 36
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Escherichia coli [TaxId: 562]}
Length = 72
Score = 31.2 bits (71), Expect = 0.012
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
+PVEV+P A++L L G + R
Sbjct: 5 LPVEVIPMARSAVARQLVKL----GGRPEYR 31
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 80
Score = 31.3 bits (71), Expect = 0.015
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 164 MPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR 194
+P+EV+P WK + L A+LR
Sbjct: 6 VPIEVIPQAWKAIIEEL----SIFNAKAELR 32
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 30.8 bits (69), Expect = 0.089
Identities = 8/61 (13%), Positives = 19/61 (31%)
Query: 21 SSPPPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVG 80
+ + A +E G ++G G V+ + + + +L +
Sbjct: 23 GNDEDEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPI 82
Query: 81 I 81
I
Sbjct: 83 I 83
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 28.8 bits (64), Expect = 0.40
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 31 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGEL 69
+ + ++AA ++ M +G G + + VD I
Sbjct: 38 ERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK 76
>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled
homolog Dvl-2 {African clawed frog (Xenopus laevis)
[TaxId: 8355]}
Length = 92
Score = 26.8 bits (59), Expect = 0.81
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
AV G + L + I +++ AV +
Sbjct: 41 AVAADGRIEPGDMLLQVNDINFENMSNDDAVRV 73
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia
coli [TaxId: 562]}
Length = 219
Score = 27.4 bits (60), Expect = 1.1
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 34 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTS 84
K + A F GM + +G + LL G + +
Sbjct: 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDT 54
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens)
[TaxId: 9606]}
Length = 94
Score = 26.4 bits (58), Expect = 1.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A R G + ++ + GI T A ++
Sbjct: 45 AAQRDGRIQVNDQIVEVDGISLVGVTQNFAATV 77
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 26.4 bits (58), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ DR G L +L + GIP + KTH + L
Sbjct: 46 SADRDGRLHPGDELVYVDGIPVAGKTHRYVIDL 78
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator
CggR {Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 26.9 bits (59), Expect = 1.4
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 29 TQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLT--NIVGIPTS 84
+ E+ + A + ++ + G+T + + + + +L G
Sbjct: 35 VKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGLGE 92
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 99
Score = 26.1 bits (57), Expect = 1.4
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A + G + + ++ + G+ TH+QAV
Sbjct: 49 AAESDGRIHKGDRVLAVNGVSLEGATHKQAVET 81
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 94
Score = 26.0 bits (57), Expect = 1.6
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
G L ++ ++ G T + + L
Sbjct: 47 PAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDL 79
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 26.0 bits (57), Expect = 1.6
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
G L ++ + G + +AV L
Sbjct: 48 PAAADGRLSLGDRILEVNGSSLLGLGYLRAVDL 80
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 26.1 bits (57), Expect = 1.9
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 67 GELLRQGKLTNIVGIPTSKKTHEQAVSL 94
GEL+ Q +K E+ + L
Sbjct: 11 GELILQESFQVWDPKTLIRKGRERHLFL 38
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis
protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 25.7 bits (56), Expect = 2.2
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAI 111
D +G L ++ G P T+E+ ++ + + S P V++ +
Sbjct: 59 LADVVGHLRAGDEVLEWNGKPLPGATNEEVYNI---ILESKSEPQVEIIV 105
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 93
Score = 25.2 bits (55), Expect = 2.5
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A + G L + + + + TH AV
Sbjct: 43 AAAQDGRLRVNDSILFVNEVDVREVTHSAAVEA 75
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 25.4 bits (55), Expect = 3.0
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A R G L +L + TH +AV L
Sbjct: 56 AAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL 88
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein
2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 25.3 bits (55), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+R G L ++ +I GI T T E+A L
Sbjct: 50 PAERCGLLQVGDRVLSINGIATEDGTMEEANQL 82
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1,
GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 95
Score = 24.8 bits (54), Expect = 3.2
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+R G + ++ I K +A+ L
Sbjct: 40 LAERTGAIHIGDRILAINSSSLKGKPLSEAIHL 72
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 24.8 bits (54), Expect = 3.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A D+ L + ++ G S TH++AV
Sbjct: 42 AADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate
deaminase/isomerase NagB {Human (Homo sapiens) [TaxId:
9606]}
Length = 281
Score = 25.9 bits (56), Expect = 3.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 50 VLGLGTGSTAKHAVDRIGELLRQGKL 75
LGL TGST ++ E + G L
Sbjct: 36 TLGLPTGSTPLGCYKKLIEYYKNGDL 61
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 107
Score = 24.9 bits (54), Expect = 3.7
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ G L ++ + G S+ TH+QAV
Sbjct: 53 PAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA 85
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate
deaminase/isomerase NagB {Escherichia coli [TaxId:
562]}
Length = 266
Score = 25.5 bits (55), Expect = 4.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 29 TQDELKKIAAYKAVEFVESG-------MVLGLGTGSTAKHAVDRIGELLRQGKL 75
T +++ K AA V + + VLGL TG T + E+ + G++
Sbjct: 8 TAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
{Acidaminococcus fermentans [TaxId: 905]}
Length = 317
Score = 25.7 bits (56), Expect = 4.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 34 KKIAAYKAV-EFVESGMVLGLGTGSTAKHAVDRIGELLRQGK--LTNIVGIP 82
K + A+ ++V SG + LG +T + + E+LRQG LT + G
Sbjct: 2 KVMTLKDAIAKYVHSGDHIALGGFTTDRKPYAAVFEILRQGITDLTGLGGAA 53
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 24.9 bits (54), Expect = 4.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ ++ G+L+ ++ GIP + KT+E+ S+
Sbjct: 61 SAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSI 93
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 24.9 bits (54), Expect = 4.5
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ G++ + I + TH V L
Sbjct: 56 PAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 24.5 bits (53), Expect = 5.1
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ G L ++ + G+ +HEQAV
Sbjct: 48 PAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA 80
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein,
PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 127
Score = 24.6 bits (53), Expect = 6.6
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A + G L +L + G K++ +A+
Sbjct: 67 AAFKDGRLRMNDQLIAVNGETLLGKSNHEAMET 99
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 24.0 bits (52), Expect = 6.7
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
++ G+L ++ +I G S+
Sbjct: 38 PAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSI 70
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 242
Score = 24.9 bits (54), Expect = 6.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 38 AYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQG 73
A +AV+ + +G + +G + IG LL+ G
Sbjct: 7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTG 42
>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 24.1 bits (52), Expect = 6.8
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ G + + ++ +I G TH A+++
Sbjct: 47 LASQEGTIQKGNEVLSINGKSLKGTTHHDALAI 79
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 24.1 bits (52), Expect = 6.8
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ G L ++ + GI + KT +Q +
Sbjct: 50 LAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM 82
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 24.0 bits (52), Expect = 6.9
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ R G L ++ I GI + +T EQ +
Sbjct: 37 MIHRQGTLHVGDEIREINGISVANQTVEQLQKM 69
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 24.8 bits (52), Expect = 7.3
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 50 VLGLGTGSTAKHAVDRI-GELLRQGKLTNIVGIPTSKKT 87
++ + TGS +D++ + G +T + G + KT
Sbjct: 2 IIQITTGSKE---LDKLLQGGIETGSITEMFGEFRTGKT 37
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 102
Score = 23.7 bits (51), Expect = 8.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
D GEL + ++ ++ G+ +HEQA
Sbjct: 45 PADLSGELRKGDQILSVNGVDLRNASHEQAAIA 77
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 23.7 bits (51), Expect = 8.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
A G L R ++ + G THE+AV++
Sbjct: 42 AASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI 74
>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 23.7 bits (51), Expect = 9.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 62 AVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSL 94
+ G+L + + G+ K H +A +
Sbjct: 44 SAHNCGQLKVGHVILEVNGLTLRGKEHREAARI 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.389
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,602
Number of extensions: 33098
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 60
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)