Query 029101
Match_columns 199
No_of_seqs 129 out of 888
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyq_A YKT6, synaptobrevin hom 100.0 3.1E-58 1.1E-62 361.2 10.5 196 1-199 2-199 (199)
2 4b93_A Vesicle-associated memb 100.0 3.7E-51 1.3E-55 319.5 0.5 177 1-194 2-181 (189)
3 2nut_C Vesicle-trafficking pro 100.0 2.6E-47 8.9E-52 299.7 11.3 183 3-194 3-190 (196)
4 3bw6_A Synaptobrevin homolog Y 100.0 2.7E-35 9.1E-40 220.4 15.5 137 1-139 5-144 (144)
5 4afi_A AP-3 complex subunit de 100.0 1.7E-28 5.9E-33 188.0 10.8 116 1-133 54-172 (173)
6 2vx8_A Nucleoporin-like protei 99.9 2.4E-25 8.3E-30 170.0 8.8 111 1-131 44-156 (169)
7 1gl2_A Endobrevin; membrane pr 99.8 1.5E-21 5.2E-26 126.1 6.4 62 133-194 4-65 (65)
8 2nps_A VAMP-4, vesicle-associa 99.8 2.6E-21 8.8E-26 128.2 4.9 65 132-196 2-68 (74)
9 3b5n_A Synaptobrevin homolog 1 99.8 1.4E-20 4.7E-25 120.1 7.7 57 138-194 2-58 (61)
10 1n7s_A Vesicle-associated memb 99.8 1.3E-20 4.5E-25 121.1 7.5 59 136-194 2-60 (63)
11 3hd7_A Vesicle-associated memb 99.8 9E-20 3.1E-24 125.4 7.4 61 136-196 3-65 (91)
12 1sfc_A VAMP 2, protein (synapt 99.8 8.8E-20 3E-24 126.4 7.3 61 136-196 28-90 (96)
13 1l4a_A Synaptobrevin; snare, s 99.8 1.1E-20 3.9E-25 126.9 1.9 64 133-196 10-75 (80)
14 1urq_A M-tomosyn isoform; tran 99.7 2.4E-17 8.3E-22 105.0 6.7 57 138-194 4-60 (63)
15 2kog_A Vesicle-associated memb 99.7 3.3E-19 1.1E-23 128.1 -2.5 60 135-194 30-89 (119)
16 3fie_C Fragment of vesicle-ass 98.3 2.2E-10 7.6E-15 65.3 -10.3 31 136-166 7-37 (38)
17 3zym_A Phosphatidylinositol-bi 98.3 1E-07 3.5E-12 79.1 0.8 33 136-168 278-310 (310)
18 2j3t_C Trafficking protein par 96.1 0.2 6.7E-06 36.5 12.4 98 1-104 1-107 (145)
19 2fh5_A Signal recognition part 95.3 0.15 5E-06 38.8 9.5 106 17-130 20-132 (185)
20 2fz0_A R-snare NYV1P, V-snare 95.2 0.021 7.2E-07 40.9 4.0 59 42-100 47-114 (149)
21 3cue_A Transport protein parti 94.3 0.78 2.7E-05 35.6 11.3 47 58-104 119-188 (219)
22 1w63_Q Adapter-related protein 93.8 1.4 4.8E-05 32.2 13.2 95 3-107 2-96 (158)
23 3tjz_C Coatomer subunit zeta-1 93.4 1.7 5.7E-05 31.8 12.5 93 3-106 13-105 (153)
24 3cue_C Transport protein parti 92.4 1.1 3.7E-05 33.1 9.1 98 1-104 1-113 (159)
25 2vgl_S AP-2 complex subunit si 92.3 2.2 7.7E-05 30.4 14.6 95 3-107 2-96 (142)
26 3hd7_B Syntaxin-1A; membrane p 92.0 0.64 2.2E-05 32.1 7.0 59 138-196 21-89 (109)
27 2j3w_A Sedlin, trafficking pro 91.9 2.5 8.7E-05 30.3 12.7 46 58-104 64-110 (142)
28 2vgl_M AP-2 complex subunit MU 88.3 11 0.00038 32.0 13.7 84 16-107 11-94 (435)
29 1w63_M Adaptor-related protein 87.0 3.5 0.00012 35.0 9.2 95 1-107 1-96 (423)
30 2j3t_D Trafficking protein par 85.3 4.5 0.00016 31.3 8.2 57 46-104 118-179 (219)
31 1jth_B Syntaxin 1A; coiled-coi 79.6 6.5 0.00022 25.0 6.1 42 138-179 10-51 (77)
32 1t3j_A Mitofusin 1; coiled coi 79.6 9.1 0.00031 25.6 6.9 50 138-187 36-85 (96)
33 1txp_A HnRNP C, heterogeneous 75.5 1.9 6.6E-05 21.9 2.0 25 141-169 2-26 (28)
34 2nps_B Syntaxin 13, vesicle-as 73.9 13 0.00046 23.0 6.8 43 137-179 5-47 (71)
35 3hd7_A Vesicle-associated memb 68.1 19 0.00064 23.6 6.2 52 138-189 12-63 (91)
36 1ccd_A Clara cell 17 KD protei 64.4 10 0.00034 24.2 4.1 43 122-164 21-64 (77)
37 1sfc_A VAMP 2, protein (synapt 61.1 33 0.0011 22.7 6.6 52 138-189 37-88 (96)
38 1utg_A Uteroglobin; steroid bi 59.4 8.8 0.0003 24.0 3.1 43 122-164 19-62 (70)
39 1n7s_A Vesicle-associated memb 52.6 35 0.0012 20.5 6.6 46 147-192 6-51 (63)
40 3b5n_A Synaptobrevin homolog 1 49.7 39 0.0013 20.2 6.6 45 147-191 4-48 (61)
41 3b5n_B Protein SSO1; snare com 44.8 52 0.0018 20.1 7.7 44 137-180 9-52 (69)
42 1gl2_A Endobrevin; membrane pr 42.6 55 0.0019 19.8 5.9 50 145-194 9-58 (65)
43 1utr_A Uteroglobin; clara cell 40.7 17 0.00057 24.2 2.3 43 122-164 40-83 (96)
44 1l4a_A Synaptobrevin; snare, s 35.8 43 0.0015 21.2 3.6 52 138-189 22-73 (80)
45 3f4m_A Tumor necrosis factor, 35.3 48 0.0017 24.2 4.2 76 83-166 85-160 (161)
46 3lcn_C MRNA transport factor G 35.0 46 0.0016 16.7 3.2 21 137-157 5-25 (29)
47 3l4f_A RHO guanine nucleotide 34.1 43 0.0015 20.3 3.1 26 171-196 5-30 (61)
48 1zkr_A Major allergen I polype 33.9 43 0.0015 24.2 3.7 43 122-164 20-64 (153)
49 1urq_A M-tomosyn isoform; tran 32.9 83 0.0028 19.0 7.5 51 138-188 11-61 (63)
50 1gl2_B Syntaxin 7; membrane pr 32.5 83 0.0028 18.9 7.6 46 137-182 8-53 (65)
51 1n7s_B Syntaxin 1A; neuronal s 32.4 85 0.0029 19.0 7.6 45 137-181 11-55 (68)
52 2ygg_A Sodium/hydrogen exchang 31.6 48 0.0016 20.7 3.1 22 144-165 6-27 (70)
53 2grg_A Hypothetical protein; Y 31.0 64 0.0022 22.0 3.9 34 53-86 74-107 (120)
54 3t97_C Nuclear pore glycoprote 29.8 67 0.0023 19.6 3.6 22 161-182 7-28 (64)
55 2nps_A VAMP-4, vesicle-associa 29.6 96 0.0033 19.2 4.5 50 140-189 17-66 (74)
56 1l4a_C S-SNAP25 fusion protein 29.5 1.1E+02 0.0039 19.5 5.1 48 136-183 25-72 (83)
57 4e81_A Chaperone protein DNAK; 28.4 1.2E+02 0.0042 22.9 5.8 58 124-190 158-215 (219)
58 2pjw_V Vacuolar protein sortin 28.2 1.3E+02 0.0044 19.7 5.0 43 137-179 32-74 (91)
59 3k4t_A Virion-associated prote 28.1 1.3E+02 0.0044 19.7 6.4 54 139-195 3-60 (95)
60 3leq_A Uncharacterized protein 27.0 1.5E+02 0.0052 20.2 9.7 91 4-100 20-114 (126)
61 1qu7_A Methyl-accepting chemot 26.9 2E+02 0.0068 21.8 6.8 48 139-186 176-223 (227)
62 2kfe_A Meucin-24; alpha-helix, 25.2 41 0.0014 16.7 1.6 19 138-156 5-23 (26)
63 3v2d_S 50S ribosomal protein L 23.3 73 0.0025 21.7 3.2 59 4-69 35-95 (112)
64 1nhl_A Synaptosomal-associated 22.4 1.2E+02 0.0042 17.5 6.9 42 142-183 4-45 (54)
65 3lof_A Heat shock 70 kDa prote 21.4 1.8E+02 0.0062 19.1 7.5 43 137-185 36-78 (113)
66 3r8s_O 50S ribosomal protein L 20.9 26 0.00089 24.2 0.5 61 4-69 34-99 (116)
67 1y4m_A HERV-FRD_6P24.1 proviru 20.5 1.2E+02 0.0042 17.7 3.4 21 137-157 6-26 (53)
68 2oxj_A Hybrid alpha/beta pepti 20.4 1.1E+02 0.0037 16.1 3.7 9 170-178 5-13 (34)
No 1
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-58 Score=361.21 Aligned_cols=196 Identities=44% Similarity=0.725 Sum_probs=178.2
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEE-EEeeCCEEEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVH-SYNRNGLCVM 79 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h-~l~~~~~~~~ 79 (199)
||||+++|+|+++ +++++|+.++|++++|+|+|++++|.+.++++.++++++|++|+++++|+|.|| |+.++|++|+
T Consensus 2 mk~~~~~v~~~~~--~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGE--PKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECS--SCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCC--CCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEE
Confidence 9999999999874 489999999999999999999999999999999999999999999999999999 7778999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCCCCCchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhH
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTI 158 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~m~~y~d~~~~dkl~~i~~~v~~v~~im~~Ni 158 (199)
|+||.+||+|+||.||++|+++|...|+.. |... +..+..++.|+++|++|+||++.|++.+++.+|+||++||++||
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~-~~~~~~f~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI 158 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVG-SPATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTM 158 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTC-CTTTCCCCTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSG
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcc-cccccccHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854 5432 23455558999999999999999999999999999999999999
Q ss_pred HHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhhccccC
Q 029101 159 DSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL 199 (199)
Q Consensus 159 ~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~cc~~~ 199 (199)
+++|+|||+||+|++||++|+++|+.|+++|+++|+||.||
T Consensus 159 ~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lnsCc~~~ 199 (199)
T 3kyq_A 159 ESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAIM 199 (199)
T ss_dssp GGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC------
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999997
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=3.7e-51 Score=319.50 Aligned_cols=177 Identities=25% Similarity=0.387 Sum_probs=139.5
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCC-CceeEeecCEEEEEEeeCCEEEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPG-QRQSVQHEEYKVHSYNRNGLCVM 79 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~-~k~t~~~~~~~~h~l~~~~~~~~ 79 (199)
|+|+|++|+| |++|||+|+..+ |. +..+++.+|+++|+. +|+++++|+|.|||++++|++|+
T Consensus 2 M~ilYa~VAr------g~~iLae~t~~~--gn---------f~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl 64 (189)
T 4b93_A 2 MAILFAVVAR------GTTILAKHAWCG--GN---------FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYL 64 (189)
T ss_dssp CSEEEEEEEE------TTEEEEEEESSE--EC---------HHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEE
T ss_pred CceEEEEEEe------CCEEEEeCCCCC--CC---------HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEE
Confidence 9999999999 789999998876 63 466899999999985 79999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcC--CCCCchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQAD--NMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 157 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~m~~y~d~~~~dkl~~i~~~v~~v~~im~~N 157 (199)
|+||.+||+++||.||++|+++|...|+..+.++.++ ...|.+.|+++|++|++|+..|++.+++.+|+||++||++|
T Consensus 65 ~i~d~~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~N 144 (189)
T 4b93_A 65 CITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRN 144 (189)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEEC
T ss_pred EEEcCccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998775544322 23467889999999999999999999999999999999999
Q ss_pred HHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 158 IDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 158 i~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
|+++|+|||+||.|++||++|+.+|+.|+++|++++|
T Consensus 145 i~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r 181 (189)
T 4b93_A 145 IDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 181 (189)
T ss_dssp CCCBCTTSSBCCCCEETTCC-----------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998
No 3
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=2.6e-47 Score=299.65 Aligned_cols=183 Identities=21% Similarity=0.328 Sum_probs=110.5
Q ss_pred EEEEEEEeeCCCCCCceeEeeeeecCCC-chhhHhhHHHHHHHHHHHHhccCCC--CCceeEeecCEEEEEEeeCCEEEE
Q 029101 3 ITALLVLKCNPDGSDPVVLATAMDVSHF-GYFQRSSVKEFILFVARTVGKRTPP--GQRQSVQHEEYKVHSYNRNGLCVM 79 (199)
Q Consensus 3 i~~~~v~r~~~~~~~~~iL~~~~~~~~~-~~f~r~~~ke~~~~i~~~il~~i~~--~~k~t~~~~~~~~h~l~~~~~~~~ 79 (199)
|+|++|+| +.|++|||++++.++. |+ ++..+ ..+++.+++++++ ++|+++++|+|.|||+.++|++|+
T Consensus 3 i~ya~IaR----~~d~~iLa~~~d~~~~~~~-~~~~~----~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l 73 (196)
T 2nut_C 3 VLLTMIAR----VADGLPLAASMQEDEQSGR-DLQQY----QSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYL 73 (196)
T ss_dssp CCCEEEEE----TTTCCEEEEECCCC------CHHHH----HHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEE
T ss_pred eEEEEEEE----cCCCcEEEEeecccccccc-cHHHH----HHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEE
Confidence 78999999 4689999999998754 43 55544 4556777777764 589999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhh-cC-CCCCchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQ-AD-NMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 157 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~-~~-~~~~~~~l~~~m~~y~d~~~~dkl~~i~~~v~~v~~im~~N 157 (199)
||||++||+++||.||++|+++|...|+..|.+.. ++ -..|.+.|+++|++|+||+..|++.+++.+|+||++||++|
T Consensus 74 ~i~d~~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~n 153 (196)
T 2nut_C 74 VLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVAN 153 (196)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEE
T ss_pred EEEcCCcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987664321 22 22567788888889999999999999999999999999999
Q ss_pred HHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 158 IDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 158 i~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
|+++|+|||+||.|++||++|+.+|+.|+++|+++++
T Consensus 154 i~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~ 190 (196)
T 2nut_C 154 IEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNM 190 (196)
T ss_dssp HHHHC--------------------------------
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998
No 4
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=100.00 E-value=2.7e-35 Score=220.36 Aligned_cols=137 Identities=38% Similarity=0.676 Sum_probs=120.5
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEEEE-eeCCEEEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSY-NRNGLCVM 79 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h~l-~~~~~~~~ 79 (199)
|+|+|++|+|.++ +++++|++++|++++|+|+|++++|.+.+++++|++|+++++|+++++++|.|||+ .++|++|+
T Consensus 5 Mkl~~~~v~r~~~--~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGG--EKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCS--SSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCC--CCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEE
Confidence 8999999999532 35999999999999999999999999999999999999999999999999999999 66999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCC-CCCchhHHHHHhhcCCChhhHH
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADN-MQPWPYLNEALNKYQDPAEADK 139 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~~~-~~~~~~~~-~~~~~~l~~~m~~y~d~~~~dk 139 (199)
||||.+||+|+||.||++|.++|...|+.. |.++.... ++.++.|+++|++|+||++.|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCCTHHHHHHHHTSCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcchHHHHHHHHHhCchhhcCC
Confidence 999999999999999999999999999977 76543222 5566999999999999988775
No 5
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=188.00 Aligned_cols=116 Identities=23% Similarity=0.349 Sum_probs=104.3
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCC-CCceeEeecCEEEEEEeeCCEEEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPP-GQRQSVQHEEYKVHSYNRNGLCVM 79 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~-~~k~t~~~~~~~~h~l~~~~~~~~ 79 (199)
|+|+|++|+| |++|||++++.+ |.| ..+++++|+++++ +.|+++++++|.|||++++|++|+
T Consensus 54 M~I~Ya~VAr------g~tiLAE~t~~~--gnf---------~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl 116 (173)
T 4afi_A 54 MAILFAVVAR------GTTILAKHAWCG--GNF---------LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYL 116 (173)
T ss_dssp CCEEEEEEEE------TTEEEEEEESSC--CCH---------HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEE
T ss_pred ccEEEEEEEC------CCEEEEEccCCC--CCH---------HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEE
Confidence 9999999999 789999999987 644 5799999999998 579999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcC--CCCCchhHHHHHhhcCC
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQAD--NMQPWPYLNEALNKYQD 133 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~m~~y~d 133 (199)
||||.+||+++||.||++|+++|...|+..|.++.++ +..|.+.|+++|++||+
T Consensus 117 ~i~D~~~~rr~aF~FLedI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 117 CITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEECCccChhHHHHHHHHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998777666443 34678999999999975
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.92 E-value=2.4e-25 Score=170.01 Aligned_cols=111 Identities=22% Similarity=0.325 Sum_probs=95.6
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCC-CCceeEeecCEEEEEEeeCCEEEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPP-GQRQSVQHEEYKVHSYNRNGLCVM 79 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~-~~k~t~~~~~~~~h~l~~~~~~~~ 79 (199)
|+|+|++|+| |++||+++++.+ + ++..+++.+++++++ ++|+++++|+|.|||+.++|++|+
T Consensus 44 M~ilYa~VaR------G~~VLae~t~~~--g---------nf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl 106 (169)
T 2vx8_A 44 MAILFAVVAR------GTTILAKHAWCG--G---------NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYL 106 (169)
T ss_dssp SCCCEEEEEE------TTEEEEEEESSC--B---------SHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEE
T ss_pred CceEEEEEEc------CCEEEEEeccCC--C---------CHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEE
Confidence 9999999999 789999999876 5 346689999999998 689999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCc-hhHHHHHhhc
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPW-PYLNEALNKY 131 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~-~~l~~~m~~y 131 (199)
||||++||+++||.||++|+++|...|+..|.++. ++.+ ..|+..|++|
T Consensus 107 ~I~D~~yp~r~AF~fLedI~~eF~~~y~~~~~~a~---pysf~~eF~~~Lk~~ 156 (169)
T 2vx8_A 107 CITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTAL---PYAMNSEFSSVLAAQ 156 (169)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHTTGGGTCC---TTTTHHHHHHHHSCC
T ss_pred EEEccccchHHHHHHHHHHHHHHHHHhhhhhhccC---CcchhHHHHHHHHHH
Confidence 99999999999999999999999999987776542 3333 3666666554
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.85 E-value=1.5e-21 Score=126.11 Aligned_cols=62 Identities=34% Similarity=0.547 Sum_probs=52.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 133 DPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 133 d~~~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
+|...|++.+++.+|++|+.||.+||+++|+|||+||.|++||++|+.+|+.|+++|++++|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56678999999999999999999999999999999999999999999999999999999986
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.83 E-value=2.6e-21 Score=128.24 Aligned_cols=65 Identities=29% Similarity=0.472 Sum_probs=59.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh--cc
Q 029101 132 QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ--CC 196 (199)
Q Consensus 132 ~d~~~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~--cc 196 (199)
++|...|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|+++++ ||
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww 68 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999999999999999999999999999999999999998 55
No 9
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.83 E-value=1.4e-20 Score=120.12 Aligned_cols=57 Identities=30% Similarity=0.522 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|+.|+++|+++++
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 58 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999997
No 10
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.83 E-value=1.3e-20 Score=121.07 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 136 ~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
..|++.+++.+|++|++||.+||+++|+|||+|+.|++||++|+.+|+.|+++|+++++
T Consensus 2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r 60 (63)
T 1n7s_A 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 60 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999997
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.80 E-value=9e-20 Score=125.36 Aligned_cols=61 Identities=28% Similarity=0.404 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh--cc
Q 029101 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ--CC 196 (199)
Q Consensus 136 ~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~--cc 196 (199)
..|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+++|+.|+++|+++++ ||
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmww 65 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 65 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999998 55
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=8.8e-20 Score=126.41 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh--cc
Q 029101 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ--CC 196 (199)
Q Consensus 136 ~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~--cc 196 (199)
..|+|.+++.+|++|++||++||++||+|||+||.|++||++|+.+|+.|+++|+++++ ||
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmww 90 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999998 55
No 13
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.79 E-value=1.1e-20 Score=126.91 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh--cc
Q 029101 133 DPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ--CC 196 (199)
Q Consensus 133 d~~~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~--cc 196 (199)
+|...|+|.+++.+|++|++||.+||++||+|||+||.|++||++|+.+|..|+++|+++++ ||
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ww 75 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC-
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999999999999999999999999999999999999999999998 55
No 14
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=2.4e-17 Score=104.99 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
+++..++.++++|++||.+||+++++|||+|+.|++||++|..+|..|.+.|++|.+
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999876
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.70 E-value=3.3e-19 Score=128.10 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 135 AEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 135 ~~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
...|++.+++.+|+||++||.+||+++|+|||+||+|++||++|+.+|+.|+++|+++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999999999999999999998
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.33 E-value=2.2e-10 Score=65.31 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchh
Q 029101 136 EADKLLKIQRELDETKIILHKTIDSVLARGE 166 (199)
Q Consensus 136 ~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge 166 (199)
..|++.+++.+|+||++||.+||+++|+||+
T Consensus 7 ~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 7 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 3588999999999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.31 E-value=1e-07 Score=79.08 Aligned_cols=33 Identities=33% Similarity=0.645 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhch
Q 029101 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKL 168 (199)
Q Consensus 136 ~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L 168 (199)
..|.+.+++++|+||++||.+||+++|+|||+|
T Consensus 278 p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 458999999999999999999999999999986
No 18
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=96.06 E-value=0.2 Score=36.50 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecC---CCchhhHhhHHHHHHHHHHHHhccCCCC----CceeEeecCEEEEEEee
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVS---HFGYFQRSSVKEFILFVARTVGKRTPPG----QRQSVQHEEYKVHSYNR 73 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~---~~~~f~r~~~ke~~~~i~~~il~~i~~~----~k~t~~~~~~~~h~l~~ 73 (199)
|.+++..|+-. +|..+-......+ ..+.-+....-..+-.-++.+.+++.|. .-.+++.++|..|++..
T Consensus 1 M~i~~~~Ii~k----~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T 76 (145)
T 2j3t_C 1 MTVHNLYLFDR----NGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYET 76 (145)
T ss_dssp -CEEEEEEECT----TSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEEC
T ss_pred CeEEEEEEEeC----CCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEc
Confidence 88999999985 2444443333222 1110111111123334445555555442 35778899999999998
Q ss_pred -CCEEEEEEecCCCChHHHHHHHHHHH-HHHHh
Q 029101 74 -NGLCVMGFMDDHYPVRSSFSLLNQVL-DEYQK 104 (199)
Q Consensus 74 -~~~~~~~vt~~~~p~~~af~fL~~i~-~~f~~ 104 (199)
.|+-|+.+||+..+. .-.||++|. +.|..
T Consensus 77 ~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 77 PTGIKVVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp TTSCEEEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred CCCCEEEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 899999999997654 557788888 55554
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=95.34 E-value=0.15 Score=38.78 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=65.3
Q ss_pred CceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEEEEeeC--CEEEEEEecCCCChHHHHHH
Q 029101 17 DPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN--GLCVMGFMDDHYPVRSSFSL 94 (199)
Q Consensus 17 ~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h~l~~~--~~~~~~vt~~~~p~~~af~f 94 (199)
+++||=++...+. .+. ..++.+.+.++-.= .....++.+|+|...+..++ +++||++=..-.+-.-+=.|
T Consensus 20 GGvVLWs~~~~~~--~~~-----~~IN~LIr~VlLEE-R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~L 91 (185)
T 2fh5_A 20 GGLVLWCFQGVSD--SCT-----GPVNALIRSVLLQE-RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDKL 91 (185)
T ss_dssp TSBEEEEEBTTTB--SCC-----CHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHHH
T ss_pred CeEEEEeecCCcc--ccc-----chHHHHHHHhhhcc-ccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHHH
Confidence 8999988644331 111 13455666665331 12334688999999998884 69999997777666677789
Q ss_pred HHHHHHHHHhhcccchhh---hh--cCCCCCchhHHHHHhh
Q 029101 95 LNQVLDEYQKNFGESWRT---AQ--ADNMQPWPYLNEALNK 130 (199)
Q Consensus 95 L~~i~~~f~~~~~~~~~~---~~--~~~~~~~~~l~~~m~~ 130 (199)
|+.++..|...|++.... .. .....|-..+.+++..
T Consensus 92 L~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~ 132 (185)
T 2fh5_A 92 IDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLRE 132 (185)
T ss_dssp HHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHH
Confidence 999999999999765221 11 1122355666666654
No 20
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.021 Score=40.85 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHHHHhccCCC--C---CceeEe-ecCEEEEEEee---CCEEEEEEecCCCChHHHHHHHHHHHH
Q 029101 42 ILFVARTVGKRTPP--G---QRQSVQ-HEEYKVHSYNR---NGLCVMGFMDDHYPVRSSFSLLNQVLD 100 (199)
Q Consensus 42 ~~~i~~~il~~i~~--~---~k~t~~-~~~~~~h~l~~---~~~~~~~vt~~~~p~~~af~fL~~i~~ 100 (199)
-+.|-..+++++.| + +|+++. .+||-.+|-.. .+.+++|.|..+.|+-+|...|.++++
T Consensus 47 h~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 47 HNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 34566677888654 3 467777 79999999883 678999999999999999999999986
No 21
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.78 Score=35.62 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=36.0
Q ss_pred ceeEeecCEEEEEEee-CCEEEEEEecCCCCh----------------------HHHHHHHHHHHHHHHh
Q 029101 58 RQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPV----------------------RSSFSLLNQVLDEYQK 104 (199)
Q Consensus 58 k~t~~~~~~~~h~l~~-~~~~~~~vt~~~~p~----------------------~~af~fL~~i~~~f~~ 104 (199)
-..+..+.|.+|++.. .|+-||+++|+..+. .-.-.||.+|.+.|..
T Consensus 119 ~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 119 LRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp CCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 3556778899999888 899999999997743 4466888888876665
No 22
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.79 E-value=1.4 Score=32.23 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=62.0
Q ss_pred EEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEEEEeeCCEEEEEEe
Q 029101 3 ITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFM 82 (199)
Q Consensus 3 i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h~l~~~~~~~~~vt 82 (199)
|=+++|+- .+|..+|+.++.... ..++.. ..+.+.+.+..+- +..--.+.++++.|.|...+++.|++++
T Consensus 2 I~~i~Il~----~~Gk~~lsk~y~~~~-~~~~~~----~~~~~~~~i~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~ 71 (158)
T 1w63_Q 2 MRFMLLFS----RQGKLRLQKWYLATS-DKERKK----MVRELMQVVLARK-PKMCSFLEWRDLKVVYKRYASLYFCCAI 71 (158)
T ss_dssp EEEEEEEC----SSSCEEEEEESSCCC-HHHHHH----HHHHHHHHHHTSC-SSSCSEEEETTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEC----CCCCEEEEEeCCCCC-HHHHHH----HHHHHHHHHhccC-CCCCCeEEECCEEEEEEEECCEEEEEEe
Confidence 34455554 246778887776532 222222 2233345555441 1222345688888888777999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcc
Q 029101 83 DDHYPVRSSFSLLNQVLDEYQKNFG 107 (199)
Q Consensus 83 ~~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
+.+.+.-..+.||..+.+-+..-++
T Consensus 72 ~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 72 EGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998877766554
No 23
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=93.37 E-value=1.7 Score=31.76 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred EEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEEEEeeCCEEEEEEe
Q 029101 3 ITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFM 82 (199)
Q Consensus 3 i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h~l~~~~~~~~~vt 82 (199)
|-+++|.- .+|..+|+.++.....+.=.+ +...+.+.+.+ .+ ++ .-.+.++++.+.|....++.|++++
T Consensus 13 I~~ililn----~~Gk~~lsK~Y~~~~~~~~~~---~~~e~~i~~~~-~r--~~-~~i~~~~~~~~vy~~~~~Lyfv~~~ 81 (153)
T 3tjz_C 13 VKAILILD----NDGDRLFAKYYDDTYPSVKEQ---KAFEKNIFNKT-HR--TD-SEIALLEGLTVVYKSSIDLYFYVIG 81 (153)
T ss_dssp EEEEEEEC----TTSCEEEEEECSSSSCSHHHH---HHHHHHHHHHH-SS--CC-CCEEEETTEEEEEEECSSCEEEEEE
T ss_pred heEEEEEC----CCCCEEEEEeCCCCCCCHHHH---HHHHHHHHHHH-hC--CC-CCEEEECCEEEEEEEECCEEEEEEE
Confidence 44556665 257788888887421111111 11222344444 23 12 2456688999988888999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhc
Q 029101 83 DDHYPVRSSFSLLNQVLDEYQKNF 106 (199)
Q Consensus 83 ~~~~p~~~af~fL~~i~~~f~~~~ 106 (199)
+.+...-..+.||..+.+.+..-+
T Consensus 82 ~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 82 SSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888777666
No 24
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=92.44 E-value=1.1 Score=33.07 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=59.9
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeec------CC---CchhhHhhHHHHHHHHHHHHhccCCCC----CceeEeecCEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDV------SH---FGYFQRSSVKEFILFVARTVGKRTPPG----QRQSVQHEEYK 67 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~------~~---~~~f~r~~~ke~~~~i~~~il~~i~~~----~k~t~~~~~~~ 67 (199)
|.|+++.|.-+ +|..+-...+.. +. ...-+...+-..+-+-++.+..++.|. .-..++.+.|.
T Consensus 1 M~i~~~~Ii~r----~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~yk 76 (159)
T 3cue_C 1 MGIYSFWIFDR----HCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYR 76 (159)
T ss_dssp CCCCEEEEECS----SSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCB
T ss_pred CeEEEEEEEcC----CCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEE
Confidence 88899999885 244443332321 00 001111122223455566677776553 34567789999
Q ss_pred EEEEee-CCEEEEEEecCCCChHHHHHHHHHHHH-HHHh
Q 029101 68 VHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLD-EYQK 104 (199)
Q Consensus 68 ~h~l~~-~~~~~~~vt~~~~p~~~af~fL~~i~~-~f~~ 104 (199)
.|++.. .|+-||+++|...+. .-.+|++|.. .|..
T Consensus 77 l~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 77 VHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK 113 (159)
T ss_dssp EEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence 999998 899999999987553 4466777776 5554
No 25
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=92.27 E-value=2.2 Score=30.43 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=62.6
Q ss_pred EEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEEEEeeCCEEEEEEe
Q 029101 3 ITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFM 82 (199)
Q Consensus 3 i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h~l~~~~~~~~~vt 82 (199)
|-+++|+- .+|..+|+.++...+ +.-++. ..+.+.+.+..+- +..--.+.++++.+.|...+++.|++++
T Consensus 2 I~~i~i~~----~~Gk~~l~k~y~~~~-~~~~~~----~~~~f~~~v~~~~-~~~~~~~~~~~~~~vy~~~~~Lyfv~~~ 71 (142)
T 2vgl_S 2 IRFILIQN----RAGKTRLAKWYMQFD-DDEKQK----LIEEVHAVVTVRD-AKHTNFVEFRNFKIIYRRYAGLYFCICV 71 (142)
T ss_dssp EEEEEEEE----TTSCEEEEEECSCCC-HHHHHH----HHHHHHHHHHTCC-TTSCSEEEETTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEc----CCCCEEEEEeCCCCC-hhhhHH----HHHHHHHHHhcCC-CCCCCEEEECCEEEEEEEECCEEEEEEe
Confidence 34555554 246778887776432 222332 3333445555441 1223345688888888777999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcc
Q 029101 83 DDHYPVRSSFSLLNQVLDEYQKNFG 107 (199)
Q Consensus 83 ~~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
+.+.+.-..+.||..+.+-+..-++
T Consensus 72 ~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 72 DVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998877766554
No 26
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=92.01 E-value=0.64 Score=32.06 Aligned_cols=59 Identities=12% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHH----------HHHHHHHHHhhhhhhcc
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS----------AASQMFYKQAKKTNQCC 196 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~----------~~s~~f~k~a~kl~~cc 196 (199)
+.+.++++.+.|+.+++.+==..+-+-|+-||.++...++-. ..|..+++++++.+.||
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~ 89 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMI 89 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeh
Confidence 568888888888888888777777788888887776655443 34667788888877644
No 27
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=91.92 E-value=2.5 Score=30.29 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=36.1
Q ss_pred ceeEeecCEEEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHHh
Q 029101 58 RQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQK 104 (199)
Q Consensus 58 k~t~~~~~~~~h~l~~-~~~~~~~vt~~~~p~~~af~fL~~i~~~f~~ 104 (199)
..+...++|..|++.. .|+=|+.++|+. ...-.-.||++|.+.|..
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~ 110 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIK 110 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHH
Confidence 4556678999999988 899999999974 344567888888877765
No 28
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=88.26 E-value=11 Score=31.98 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=56.7
Q ss_pred CCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeecCEEEEEEeeCCEEEEEEecCCCChHHHHHHH
Q 029101 16 SDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLL 95 (199)
Q Consensus 16 ~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~~~~k~t~~~~~~~~h~l~~~~~~~~~vt~~~~p~~~af~fL 95 (199)
+|..+|+.++.... . |... +...+.+..+-.+..--.+..+++.|.|...+++.|+|+++.+...-..+.||
T Consensus 11 ~Gk~~l~k~y~~~~-~---~~~~----~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L 82 (435)
T 2vgl_M 11 KGEVLISRVYRDDI-G---RNAV----DAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFL 82 (435)
T ss_dssp TCCEEEEEECSSSC-C---HHHH----HHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHH
T ss_pred CCCEEEEEecCCCC-C---hhHH----HHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHH
Confidence 46778887776431 2 3222 22234444332222234567889888888789999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 029101 96 NQVLDEYQKNFG 107 (199)
Q Consensus 96 ~~i~~~f~~~~~ 107 (199)
..+.+-+..-++
T Consensus 83 ~~~v~vl~~yf~ 94 (435)
T 2vgl_M 83 YKMCDVMAAYFG 94 (435)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 998877665554
No 29
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.01 E-value=3.5 Score=34.99 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=61.3
Q ss_pred CeEEEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCC-CCCceeEeecCEEEEEEeeCCEEEE
Q 029101 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTP-PGQRQSVQHEEYKVHSYNRNGLCVM 79 (199)
Q Consensus 1 M~i~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~-~~~k~t~~~~~~~~h~l~~~~~~~~ 79 (199)
|-|-+++|+-. +|..+|+.++.... .|..+... .+.++.+-. ...--.+..+++.|.|...+++.|+
T Consensus 1 mMI~~i~I~~~----~Gk~~l~k~y~~~~----~~~~~~~f----~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv 68 (423)
T 1w63_M 1 MSASAVYVLDL----KGKVLICRNYRGDV----DMSEVEHF----MPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLV 68 (423)
T ss_dssp -CCCEEEEEET----TTEECSCBCCSCSC----TTTTHHHH----HHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEE
T ss_pred CceEEEEEECC----CCCEEEEEecCCCC----ChHHHHHH----HHHHhhccccCCCCCEEEECCEEEEEEEECCEEEE
Confidence 44566677652 46677777766421 12222222 233333211 1122356688888888888999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcc
Q 029101 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFG 107 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~~f~~~~~ 107 (199)
|+++.+...-..+.||..+.+-+..-++
T Consensus 69 ~~~~~~~n~l~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 69 ATSKKNACVSLVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp EEESSCCCTHHHHHHHHHHHHHHHHHSS
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887766554
No 30
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=85.32 E-value=4.5 Score=31.33 Aligned_cols=57 Identities=19% Similarity=0.379 Sum_probs=42.1
Q ss_pred HHHHhccCCCC----CceeEeecCEEEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHHh
Q 029101 46 ARTVGKRTPPG----QRQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQK 104 (199)
Q Consensus 46 ~~~il~~i~~~----~k~t~~~~~~~~h~l~~-~~~~~~~vt~~~~p~~~af~fL~~i~~~f~~ 104 (199)
...+..++.|. .-.+++.+.|..|++.. .|+-|+.++|+.-+. .-.||++|.+.|..
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~--ir~~l~~IyelYvd 179 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAG--IDSLLRKIYEIYSD 179 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchH--HHHHHHHHHHHHHH
Confidence 44455555442 34677899999999998 899999999987443 56788888876654
No 31
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=79.61 E-value=6.5 Score=24.96 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHH
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~ 179 (199)
+.+.++++.+.++.+++.+==.-+.+-|+-||.++...+.-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 578999999999999999888888899998888766554433
No 32
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=79.60 E-value=9.1 Score=25.63 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHH
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYK 187 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k 187 (199)
.-...+..+|++++.-|.+-|+.+=..=..||.+..++.-|...|..+..
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~ 85 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLES 85 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35788999999999999999999999999999988888888877765543
No 33
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=75.45 E-value=1.9 Score=21.85 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhchhchH
Q 029101 141 LKIQRELDETKIILHKTIDSVLARGEKLD 169 (199)
Q Consensus 141 ~~i~~~v~~v~~im~~Ni~~~l~Rge~L~ 169 (199)
..++.++.++| .+||.+|+|=|+++
T Consensus 2 Q~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 34666676665 47888888877654
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=73.85 E-value=13 Score=23.03 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHH
Q 029101 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~ 179 (199)
...+.+|...+.++.+++.+==.-|-+-|+-||.++...+.-.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 47 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3578899999999999999888888899999998877755544
No 35
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=68.08 E-value=19 Score=23.65 Aligned_cols=52 Identities=6% Similarity=0.059 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHh
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQA 189 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a 189 (199)
+.++.++.-+.+--+-+.++=+++=+=.++-+.|.+.|..-..+|...+++.
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666555555555555555555566677788888888888877764
No 36
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=64.37 E-value=10 Score=24.25 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=34.7
Q ss_pred hhHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029101 122 PYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLAR 164 (199)
Q Consensus 122 ~~l~~~m~~y~d~-~~~dkl~~i~~~v~~v~~im~~Ni~~~l~R 164 (199)
+.....+++|+.+ .......++++-++....-=..||.++|++
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5677888999855 456888899999998888888888888874
No 37
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=61.09 E-value=33 Score=22.72 Aligned_cols=52 Identities=6% Similarity=0.059 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHh
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQA 189 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a 189 (199)
+.+..++.-+.+.-+-+.+.=+++=+=.++-+.|.+.|..-..+|...+++.
T Consensus 37 ~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 37 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666667778888888888888887765
No 38
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=59.39 E-value=8.8 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=33.6
Q ss_pred hhHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029101 122 PYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLAR 164 (199)
Q Consensus 122 ~~l~~~m~~y~d~-~~~dkl~~i~~~v~~v~~im~~Ni~~~l~R 164 (199)
+.....+++|+.+ .......++++-++....-=..||.++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677788999855 456788888888888777778888888874
No 39
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=52.60 E-value=35 Score=20.47 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhh
Q 029101 147 LDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKT 192 (199)
Q Consensus 147 v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl 192 (199)
+..++.-+.+..+-+.++-+++=.=-++-+.|.+.|..+...|...
T Consensus 6 l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F 51 (63)
T 1n7s_A 6 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444443
No 40
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=49.66 E-value=39 Score=20.15 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhh
Q 029101 147 LDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKK 191 (199)
Q Consensus 147 v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~k 191 (199)
+..++.-+.+..+-+.++-+++=.=-++-+.|.+.|..+...|+.
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~ 48 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQG 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333444444444444444443
No 41
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=44.83 E-value=52 Score=20.11 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHH
Q 029101 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 180 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~ 180 (199)
...+.++.+.+.++.+++.+==.-+.+-|+-|+.+....+.-..
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQL 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35789999999999999999888889999999888876665543
No 42
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.59 E-value=55 Score=19.79 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhhhhhh
Q 029101 145 RELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAKKTNQ 194 (199)
Q Consensus 145 ~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 194 (199)
..+..++.-+.+..+-+.++-+++=.=-++-+.|.+.|..+...|+..++
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k 58 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 58 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555555555666666666666666665543
No 43
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=40.66 E-value=17 Score=24.19 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=33.6
Q ss_pred hhHHHHHhhcCCCh-hhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029101 122 PYLNEALNKYQDPA-EADKLLKIQRELDETKIILHKTIDSVLAR 164 (199)
Q Consensus 122 ~~l~~~m~~y~d~~-~~dkl~~i~~~v~~v~~im~~Ni~~~l~R 164 (199)
+..+..+++|+.+. ..+...++++-+++....=..||.++|++
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56777888998654 56788888888888877778888888764
No 44
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=35.79 E-value=43 Score=21.25 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHh
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQA 189 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a 189 (199)
+.+..++.-+.+.-+-+.+.=+++=.=.++-+.|...|..-..+|...+++.
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555677777888888888776654
No 45
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=35.32 E-value=48 Score=24.23 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=48.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCchhHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029101 83 DDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVL 162 (199)
Q Consensus 83 ~~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~~l~~~m~~y~d~~~~dkl~~i~~~v~~v~~im~~Ni~~~l 162 (199)
+-+|.+...-..|.|.++...+...... .+.....++.....|.+|.=.+.+-.- +..+.-.-+.+.++++|
T Consensus 85 dfTfD~~~L~~~L~ec~~lL~~lv~~HL------T~KS~~Ri~~vF~~f~~~efL~~lf~~--~~~~~L~kI~~~Lnkll 156 (161)
T 3f4m_A 85 DFTFEAAVLAGLLTECRDVLLELVEHHL------TPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKLL 156 (161)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTTTS------CHHHHHHHHHHHHHHTCHHHHHHHTSG--GGHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHhhC------CcchHHHHHHHHHHhCCHHHHHHHhCc--HHHHHHHHHHHHHHHHH
Confidence 4456777777788888877665443221 112235666667777777644444433 66677777788899999
Q ss_pred hchh
Q 029101 163 ARGE 166 (199)
Q Consensus 163 ~Rge 166 (199)
++|.
T Consensus 157 d~g~ 160 (161)
T 3f4m_A 157 DEGK 160 (161)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 9884
No 46
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=35.04 E-value=46 Score=16.73 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029101 137 ADKLLKIQRELDETKIILHKT 157 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~N 157 (199)
.+++.-++..++|-+.|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999998776
No 47
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=34.07 E-value=43 Score=20.30 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhhhcc
Q 029101 171 LVEKSSDLSAASQMFYKQAKKTNQCC 196 (199)
Q Consensus 171 L~~ks~~L~~~s~~f~k~a~kl~~cc 196 (199)
|+|---.|..+...+++.++++++||
T Consensus 5 LVDtVYalkDev~eLk~e~k~~k~~l 30 (61)
T 3l4f_A 5 LVDTVYALKDEVQELRQDNKKMKKSL 30 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554
No 48
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=33.92 E-value=43 Score=24.22 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=31.4
Q ss_pred hhHHHHHhhcCCC-hhhHHHHHHHHHHH-HHHHHHHHhHHHHHhc
Q 029101 122 PYLNEALNKYQDP-AEADKLLKIQRELD-ETKIILHKTIDSVLAR 164 (199)
Q Consensus 122 ~~l~~~m~~y~d~-~~~dkl~~i~~~v~-~v~~im~~Ni~~~l~R 164 (199)
+.....+++|+.+ .......++++-++ ....-=..||.++|++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 4677788899855 45678888888888 6666666677777764
No 49
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=32.94 E-value=83 Score=19.02 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHH
Q 029101 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQ 188 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~ 188 (199)
..+..+...+.+-.+-+.+.-+++=.=.++-+.|.+.++.-+.+|..+++.
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666777777777777777766777778888888888888777653
No 50
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=32.48 E-value=83 Score=18.89 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHH
Q 029101 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAAS 182 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s 182 (199)
...+.++.+.+.++.+++.+==.-+-+-|+-|+.+....+.-....
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999888888899999998887766655443
No 51
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=32.39 E-value=85 Score=18.99 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHH
Q 029101 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAA 181 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~ 181 (199)
.+.+.++.+.+.++.+++.+==.-+.+-|+-|+.+....+.-...
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 55 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 55 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 357899999999999999998888899999999888776655543
No 52
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=31.64 E-value=48 Score=20.69 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhch
Q 029101 144 QRELDETKIILHKTIDSVLARG 165 (199)
Q Consensus 144 ~~~v~~v~~im~~Ni~~~l~Rg 165 (199)
..+++++++|+..|+.++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999998774
No 53
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=30.99 E-value=64 Score=21.99 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCCCCceeEeecCEEEEEEeeCCEEEEEEecCCC
Q 029101 53 TPPGQRQSVQHEEYKVHSYNRNGLCVMGFMDDHY 86 (199)
Q Consensus 53 i~~~~k~t~~~~~~~~h~l~~~~~~~~~vt~~~~ 86 (199)
+....-..++.+++..|++.++|-+.++.|+++-
T Consensus 74 Ld~eGyaV~eD~~v~vhvyK~dGkTlvvYT~~nk 107 (120)
T 2grg_A 74 LGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 107 (120)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTEEEEEEESCCC
T ss_pred hcccceeEEecCCEEEEEEeeCCcEEEEEccCCc
Confidence 3333456788999999999999999999998754
No 54
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=29.76 E-value=67 Score=19.61 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHhchhchHHHHHhhHHHHHHH
Q 029101 161 VLARGEKLDSLVEKSSDLSAAS 182 (199)
Q Consensus 161 ~l~Rge~L~~L~~ks~~L~~~s 182 (199)
++++|++|..|.+.+......-
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q 28 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQ 28 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444333
No 55
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=29.57 E-value=96 Score=19.16 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHh
Q 029101 140 LLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQA 189 (199)
Q Consensus 140 l~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a 189 (199)
+..++.-+.+.-+-+.+.=+++=.=.++-+.|...|..-..+|...++..
T Consensus 17 l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 17 VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444555678888888888888887765
No 56
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=29.48 E-value=1.1e+02 Score=19.54 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHH
Q 029101 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (199)
Q Consensus 136 ~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~ 183 (199)
..+.......-+.+.+.+...++..+..-||.|+......+.+...-+
T Consensus 25 sl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~ 72 (83)
T 1l4a_C 25 SLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMK 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777888899999999999999999999998888877765543
No 57
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=28.45 E-value=1.2e+02 Score=22.94 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=37.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHHHHhh
Q 029101 124 LNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFYKQAK 190 (199)
Q Consensus 124 l~~~m~~y~d~~~~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~k~a~ 190 (199)
+++.+..|.+.-..+...++...++++++.+..| ..+.+..+.+.|...+..+...+-
T Consensus 158 ~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~---------~~~~i~~~~~~L~~~~~~i~~~~~ 215 (219)
T 4e81_A 158 TRKQVEEAGDKLPADDKTAIESALTALETALKGE---------DKAAIEAKMQELAQVSQKLMEIAQ 215 (219)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS---------CHHHHHHHHHHHHHHTHHHHHHC-
T ss_pred HHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334443333223355677777787777777655 567888888888888877765543
No 58
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=28.21 E-value=1.3e+02 Score=19.70 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHH
Q 029101 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~ 179 (199)
..++..+-.++..++--|..++++-.++.+.|=++.+|-....
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~ 74 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIM 74 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988777777765543
No 59
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=28.08 E-value=1.3e+02 Score=19.71 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHH---HHHHHhHHHHHhchhchHHHHHhhHHHHH-HHHHHHHHhhhhhhc
Q 029101 139 KLLKIQRELDETK---IILHKTIDSVLARGEKLDSLVEKSSDLSA-ASQMFYKQAKKTNQC 195 (199)
Q Consensus 139 kl~~i~~~v~~v~---~im~~Ni~~~l~Rge~L~~L~~ks~~L~~-~s~~f~k~a~kl~~c 195 (199)
++.+++.+|.++. .-|..-|+.+|+|-..-.-.. +.|.. .|+-..--+++++.|
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~~---~~lEsiAAKIIkDisdkId~C 60 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIK---ESLETVAAKIVNDLTKLINDC 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch---hhHHHHHHHHHHHHHHHHhcC
Confidence 5778888888874 457778888888754433322 23332 344555556667665
No 60
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=26.99 E-value=1.5e+02 Score=20.19 Aligned_cols=91 Identities=12% Similarity=0.160 Sum_probs=42.9
Q ss_pred EEEEEEeeCCCCCCceeEeeeeecCCCchhhH-hhHHHHHHHHHHHHhccCCCC--CceeEee-cCEEEEEEeeCCEEEE
Q 029101 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYFQR-SSVKEFILFVARTVGKRTPPG--QRQSVQH-EEYKVHSYNRNGLCVM 79 (199)
Q Consensus 4 ~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r-~~~ke~~~~i~~~il~~i~~~--~k~t~~~-~~~~~h~l~~~~~~~~ 79 (199)
-+++|+- .|+++++.....+. ..-.+ ..+-..+-..++.+...+..+ ....++. ++|+|-+-..++.+.+
T Consensus 20 ~~avlvs-----~DGl~ia~~~~~~~-~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~ 93 (126)
T 3leq_A 20 DHAVVLS-----EDGLVVSKSTGFLR-DDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLV 93 (126)
T ss_dssp EEEEEEE-----TTSCEEEECTTSCH-HHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEE
T ss_pred eEEEEEc-----CCCcEEEeeCCCCc-ccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEE
Confidence 3555555 39999998654331 01111 011112222233333333333 2344554 4566555555788888
Q ss_pred EEecCCCChHHHHHHHHHHHH
Q 029101 80 GFMDDHYPVRSSFSLLNQVLD 100 (199)
Q Consensus 80 ~vt~~~~p~~~af~fL~~i~~ 100 (199)
++++++..--....=+..+..
T Consensus 94 vla~~~a~lG~v~~em~~~v~ 114 (126)
T 3leq_A 94 VLTRQGADVGVVAYQMNMLVK 114 (126)
T ss_dssp EEECTTCCHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHH
Confidence 899999887655444444433
No 61
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=26.88 E-value=2e+02 Score=21.81 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHHH
Q 029101 139 KLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFY 186 (199)
Q Consensus 139 kl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f~ 186 (199)
....+...++++..+..++-..+=+-....+.|.+.++.|......|+
T Consensus 176 ~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~L~~~a~~L~~~v~~Fk 223 (227)
T 1qu7_A 176 GIDQVGLAVAEMDRVTQQNAALVEQSAAAAAALEEQASRLTEAVAVFR 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555444444444555555555555555553
No 62
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=25.16 E-value=41 Score=16.70 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029101 138 DKLLKIQRELDETKIILHK 156 (199)
Q Consensus 138 dkl~~i~~~v~~v~~im~~ 156 (199)
.-+.+++..+.++++-|..
T Consensus 5 ei~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3567788888888887754
No 63
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=23.27 E-value=73 Score=21.74 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=32.9
Q ss_pred EEEEEEeeCCCCCCceeEeeeeecCCCchhhHhhHHHHHHHHHHHHhccCC-CC-CceeEeecCEEEE
Q 029101 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTP-PG-QRQSVQHEEYKVH 69 (199)
Q Consensus 4 ~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f~r~~~ke~~~~i~~~il~~i~-~~-~k~t~~~~~~~~h 69 (199)
+|+.|... .++.+|++.+.... . + +..=.+.+..+-..+.++.. .+ +...++.++|.||
T Consensus 35 iyAQiidd----~~~~tlasAsT~e~-~-~-k~~n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~yh 95 (112)
T 3v2d_S 35 IYAQIIDD----EKGVTLVSASSLAL-K-L-KGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYH 95 (112)
T ss_dssp EEEEEEET----TTTEEEEEEETTTT-T-C-CCCHHHHHHHHHHHHHHHHHTTTCCBCEEECTTSCSC
T ss_pred EEEEEEec----CCCeEEEEEEecch-h-c-cCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCccc
Confidence 56677752 46667777666543 1 1 11112344555555555532 24 6778888888886
No 64
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=22.40 E-value=1.2e+02 Score=17.46 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHH
Q 029101 142 KIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (199)
Q Consensus 142 ~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~ 183 (199)
....-+.+..++-...+..+-+.||.|+.....-++.....+
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~ 45 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHH
Confidence 345667889999999999999999999988877776665443
No 65
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=21.38 E-value=1.8e+02 Score=19.11 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHHHHHHHHH
Q 029101 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMF 185 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~Ni~~~l~Rge~L~~L~~ks~~L~~~s~~f 185 (199)
.+...+++..|++++..+..| .....+.+..+.+.|...+..+
T Consensus 36 ~eek~~i~~~i~e~~~wL~~~------~~a~~e~i~~k~~eL~~~~~~i 78 (113)
T 3lof_A 36 EADKKKVLDKCQEVISWLDAN------TLAEKDEFEHKRKELEQVCNPI 78 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------TTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC------CcCCHHHHHHHHHHHHHHHHHH
Confidence 455677888888888777554 1123667777777777666554
No 66
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=20.91 E-value=26 Score=24.16 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=31.1
Q ss_pred EEEEEEeeCCCCCCceeEeeeeecCCCchh---hHhhHHHHHHHHHHHHhccCC-CC-CceeEeecCEEEE
Q 029101 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYF---QRSSVKEFILFVARTVGKRTP-PG-QRQSVQHEEYKVH 69 (199)
Q Consensus 4 ~~~~v~r~~~~~~~~~iL~~~~~~~~~~~f---~r~~~ke~~~~i~~~il~~i~-~~-~k~t~~~~~~~~h 69 (199)
+|+.|.. ..++.+|++.+.... ..+ ....=.+.+..+-..+.++.. .+ +...++.++|.||
T Consensus 34 IyAQiid----d~~g~tlasAST~e~-~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yh 99 (116)
T 3r8s_O 34 IYAQVIA----PNGSEVLVAASTVEK-AIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH 99 (116)
T ss_dssp EEEEEEC----TTSSCEEEECCSSSH-HHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTSCSS
T ss_pred EEEEEEE----cCCCeEEEEEeeCch-hhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCccc
Confidence 5666765 245667776665431 110 001111344445555555432 24 5677888888775
No 67
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=20.50 E-value=1.2e+02 Score=17.71 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029101 137 ADKLLKIQRELDETKIILHKT 157 (199)
Q Consensus 137 ~dkl~~i~~~v~~v~~im~~N 157 (199)
.+.+..++.+++.+.++..+|
T Consensus 6 ~~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999998888777
No 68
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.45 E-value=1.1e+02 Score=16.13 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.3
Q ss_pred HHHHhhHHH
Q 029101 170 SLVEKSSDL 178 (199)
Q Consensus 170 ~L~~ks~~L 178 (199)
.|++|-++|
T Consensus 5 QLE~kVEeL 13 (34)
T 2oxj_A 5 QLEXKVXEL 13 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
Done!