Query 029103
Match_columns 199
No_of_seqs 108 out of 1857
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.2E-42 4.8E-47 237.5 21.3 177 4-180 3-180 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 4.2E-41 9.1E-46 230.4 20.4 191 8-199 3-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 2.1E-39 4.6E-44 225.9 20.8 173 6-178 8-180 (207)
4 KOG0080 GTPase Rab18, small G 100.0 1.6E-39 3.4E-44 215.9 19.1 198 1-198 1-207 (209)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.9E-39 6.2E-44 221.5 20.1 176 1-176 13-189 (221)
6 cd04120 Rab12 Rab12 subfamily. 100.0 1.7E-37 3.8E-42 223.6 23.6 165 11-175 1-166 (202)
7 cd04121 Rab40 Rab40 subfamily. 100.0 8.6E-37 1.9E-41 218.1 23.4 168 8-176 4-171 (189)
8 KOG0098 GTPase Rab2, small G p 100.0 5.4E-37 1.2E-41 208.8 18.2 169 7-175 3-171 (216)
9 KOG0394 Ras-related GTPase [Ge 100.0 1.1E-36 2.4E-41 206.8 18.5 170 8-177 7-183 (210)
10 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.2E-36 9.1E-41 217.4 22.1 165 11-175 1-171 (201)
11 cd04110 Rab35 Rab35 subfamily. 100.0 1.2E-35 2.6E-40 214.6 23.2 190 8-198 4-199 (199)
12 PLN03110 Rab GTPase; Provision 100.0 2.6E-35 5.6E-40 215.2 24.3 174 1-174 1-176 (216)
13 cd04125 RabA_like RabA-like su 100.0 4.3E-35 9.2E-40 210.1 23.1 185 11-198 1-185 (188)
14 cd04112 Rab26 Rab26 subfamily. 100.0 4.3E-35 9.4E-40 210.5 23.0 188 11-198 1-191 (191)
15 KOG0087 GTPase Rab11/YPT3, sma 100.0 9.8E-36 2.1E-40 206.7 18.5 169 6-174 10-178 (222)
16 cd04144 Ras2 Ras2 subfamily. 100.0 2.8E-35 6.1E-40 211.3 20.8 185 12-199 1-188 (190)
17 cd04122 Rab14 Rab14 subfamily. 100.0 5.8E-35 1.3E-39 205.4 21.5 164 10-173 2-165 (166)
18 cd04111 Rab39 Rab39 subfamily. 100.0 1.4E-34 3.1E-39 210.5 23.2 170 9-178 1-172 (211)
19 PTZ00369 Ras-like protein; Pro 100.0 6.6E-35 1.4E-39 209.2 21.1 169 9-178 4-173 (189)
20 cd01867 Rab8_Rab10_Rab13_like 100.0 1.1E-34 2.3E-39 204.3 21.5 166 8-173 1-166 (167)
21 cd04126 Rab20 Rab20 subfamily. 100.0 8.3E-35 1.8E-39 211.9 21.2 162 11-177 1-195 (220)
22 KOG0093 GTPase Rab3, small G p 100.0 1.9E-35 4.2E-40 193.7 15.1 168 8-175 19-186 (193)
23 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-34 3.3E-39 205.5 21.0 164 7-172 2-180 (182)
24 KOG0079 GTP-binding protein H- 100.0 5.8E-36 1.3E-40 196.4 12.5 166 9-175 7-172 (198)
25 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-34 5.7E-39 210.0 22.8 164 11-174 1-168 (215)
26 KOG0091 GTPase Rab39, small G 100.0 1.9E-35 4E-40 197.1 14.4 192 8-199 6-213 (213)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.7E-34 5.9E-39 203.0 21.1 166 10-176 2-168 (172)
28 cd04117 Rab15 Rab15 subfamily. 100.0 2.6E-34 5.7E-39 201.1 20.8 160 11-170 1-160 (161)
29 cd01865 Rab3 Rab3 subfamily. 100.0 3.4E-34 7.4E-39 201.3 21.4 163 11-173 2-164 (165)
30 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.7E-34 1.2E-38 208.6 23.3 164 9-174 12-190 (232)
31 cd04133 Rop_like Rop subfamily 100.0 3.3E-34 7.1E-39 202.7 21.1 160 11-172 2-173 (176)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.8E-34 8.3E-39 201.2 21.3 164 10-173 2-165 (166)
33 KOG0088 GTPase Rab21, small G 100.0 3.4E-35 7.3E-40 195.0 14.6 169 7-175 10-178 (218)
34 cd04127 Rab27A Rab27a subfamil 100.0 4.5E-34 9.7E-39 203.4 21.0 167 8-174 2-179 (180)
35 cd04118 Rab24 Rab24 subfamily. 100.0 1.9E-33 4.1E-38 202.4 23.9 166 11-177 1-171 (193)
36 cd01875 RhoG RhoG subfamily. 100.0 8.2E-34 1.8E-38 203.7 22.0 162 10-173 3-178 (191)
37 cd04131 Rnd Rnd subfamily. Th 100.0 6.7E-34 1.5E-38 201.8 20.9 161 10-172 1-176 (178)
38 PF00071 Ras: Ras family; Int 100.0 1E-33 2.3E-38 198.2 21.3 161 12-172 1-161 (162)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 8.9E-34 1.9E-38 199.4 20.8 162 11-172 1-167 (168)
40 cd01868 Rab11_like Rab11-like. 100.0 2E-33 4.4E-38 197.3 21.2 163 9-171 2-164 (165)
41 cd01866 Rab2 Rab2 subfamily. 100.0 2.6E-33 5.5E-38 197.4 21.7 166 8-173 2-167 (168)
42 PLN03118 Rab family protein; P 100.0 7.5E-33 1.6E-37 201.8 24.0 170 5-175 9-180 (211)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.5E-33 5.5E-38 199.6 21.0 164 11-175 1-169 (182)
44 cd04136 Rap_like Rap-like subf 100.0 2E-33 4.4E-38 196.8 20.0 161 10-171 1-162 (163)
45 cd04132 Rho4_like Rho4-like su 100.0 2.8E-33 6E-38 200.5 21.0 164 11-176 1-171 (187)
46 cd01864 Rab19 Rab19 subfamily. 100.0 3E-33 6.6E-38 196.5 20.8 162 9-170 2-164 (165)
47 PLN03108 Rab family protein; P 100.0 9.7E-33 2.1E-37 200.9 23.8 168 8-175 4-171 (210)
48 cd04113 Rab4 Rab4 subfamily. 100.0 3.1E-33 6.8E-38 195.6 20.4 160 11-170 1-160 (161)
49 cd04175 Rap1 Rap1 subgroup. T 100.0 5.2E-33 1.1E-37 195.1 20.2 162 10-172 1-163 (164)
50 PLN03071 GTP-binding nuclear p 100.0 6.8E-33 1.5E-37 202.7 21.0 165 8-175 11-175 (219)
51 smart00175 RAB Rab subfamily o 100.0 9.6E-33 2.1E-37 193.5 21.0 163 11-173 1-163 (164)
52 cd04106 Rab23_lke Rab23-like s 100.0 5.5E-33 1.2E-37 194.5 19.7 159 11-170 1-161 (162)
53 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.3E-32 2.7E-37 194.2 21.2 162 12-173 2-166 (170)
54 cd00877 Ran Ran (Ras-related n 100.0 1.7E-32 3.6E-37 192.9 21.5 160 11-173 1-160 (166)
55 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.1E-32 2.5E-37 195.2 20.6 159 11-171 2-174 (175)
56 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.3E-32 4.9E-37 199.2 22.3 164 10-175 1-179 (222)
57 KOG0095 GTPase Rab30, small G 100.0 1.6E-33 3.4E-38 185.4 14.4 169 7-175 4-172 (213)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-32 3E-37 192.7 20.3 161 10-171 1-162 (163)
59 cd04124 RabL2 RabL2 subfamily. 100.0 2.5E-32 5.4E-37 191.1 21.3 160 11-174 1-160 (161)
60 KOG0086 GTPase Rab4, small G p 100.0 2E-33 4.3E-38 185.6 14.6 170 5-174 4-173 (214)
61 cd04134 Rho3 Rho3 subfamily. 100.0 3.5E-32 7.5E-37 195.1 21.8 163 11-175 1-177 (189)
62 cd01861 Rab6 Rab6 subfamily. 100.0 2.4E-32 5.3E-37 191.0 20.4 160 11-170 1-160 (161)
63 cd01860 Rab5_related Rab5-rela 100.0 4.3E-32 9.4E-37 190.1 21.2 162 10-171 1-162 (163)
64 cd04140 ARHI_like ARHI subfami 100.0 2.7E-32 5.8E-37 191.7 20.1 159 11-170 2-163 (165)
65 cd04116 Rab9 Rab9 subfamily. 100.0 5E-32 1.1E-36 191.2 21.1 162 8-170 3-169 (170)
66 smart00173 RAS Ras subfamily o 100.0 3E-32 6.6E-37 191.1 19.9 162 11-173 1-163 (164)
67 cd01871 Rac1_like Rac1-like su 100.0 4.7E-32 1E-36 191.9 20.4 159 10-170 1-173 (174)
68 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.7E-32 1.5E-36 190.6 20.8 162 10-171 2-168 (170)
69 cd04145 M_R_Ras_like M-Ras/R-R 100.0 8.9E-32 1.9E-36 188.7 20.6 161 10-171 2-163 (164)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.1E-32 1.7E-36 188.3 20.3 160 10-171 1-161 (162)
71 cd04142 RRP22 RRP22 subfamily. 100.0 7.2E-32 1.6E-36 194.3 20.3 167 11-177 1-179 (198)
72 cd04123 Rab21 Rab21 subfamily. 100.0 2.4E-31 5.1E-36 186.0 21.3 161 11-171 1-161 (162)
73 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.8E-31 3.8E-36 187.2 19.9 160 11-171 1-163 (164)
74 cd01862 Rab7 Rab7 subfamily. 100.0 5.8E-31 1.2E-35 185.9 21.5 165 11-175 1-170 (172)
75 smart00176 RAN Ran (Ras-relate 100.0 2.9E-31 6.2E-36 191.0 19.9 156 16-174 1-156 (200)
76 smart00174 RHO Rho (Ras homolo 100.0 3.9E-31 8.5E-36 187.2 20.0 159 13-173 1-173 (174)
77 cd04114 Rab30 Rab30 subfamily. 100.0 1.2E-30 2.5E-35 184.0 22.1 164 8-171 5-168 (169)
78 cd01863 Rab18 Rab18 subfamily. 100.0 8.2E-31 1.8E-35 183.3 21.0 159 11-170 1-160 (161)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 8.8E-31 1.9E-35 184.5 21.0 162 10-172 1-164 (168)
80 cd00154 Rab Rab family. Rab G 100.0 5.7E-31 1.2E-35 183.1 19.3 158 11-168 1-158 (159)
81 cd01892 Miro2 Miro2 subfamily. 100.0 6.9E-31 1.5E-35 185.1 19.1 163 9-173 3-167 (169)
82 cd04143 Rhes_like Rhes_like su 100.0 8.8E-31 1.9E-35 194.2 20.1 161 11-172 1-171 (247)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-30 2.6E-35 187.4 20.1 158 10-170 2-194 (195)
84 cd04146 RERG_RasL11_like RERG/ 100.0 7.9E-31 1.7E-35 184.2 18.6 160 12-172 1-164 (165)
85 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.1E-30 4.5E-35 183.4 20.8 157 11-169 1-171 (173)
86 cd04103 Centaurin_gamma Centau 100.0 1.4E-30 3.1E-35 181.5 19.5 153 11-170 1-157 (158)
87 cd04148 RGK RGK subfamily. Th 100.0 1.9E-30 4.1E-35 190.1 20.8 163 11-175 1-166 (221)
88 cd04135 Tc10 TC10 subfamily. 100.0 3.2E-30 6.9E-35 182.6 20.8 159 11-171 1-173 (174)
89 KOG0081 GTPase Rab27, small G 100.0 5.3E-33 1.2E-37 184.7 5.3 170 8-177 7-186 (219)
90 KOG0097 GTPase Rab14, small G 100.0 2.8E-30 6.2E-35 168.8 17.4 167 8-174 9-175 (215)
91 cd04129 Rho2 Rho2 subfamily. 100.0 1.6E-29 3.4E-34 181.1 22.0 162 10-173 1-174 (187)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-29 2.3E-34 178.0 20.5 162 11-173 1-163 (164)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.2E-32 6.9E-37 176.0 6.1 162 14-175 1-163 (192)
94 cd00876 Ras Ras family. The R 100.0 1.1E-29 2.4E-34 177.1 18.6 158 12-170 1-159 (160)
95 cd04147 Ras_dva Ras-dva subfam 100.0 1.6E-29 3.6E-34 182.5 19.1 163 12-175 1-166 (198)
96 cd04137 RheB Rheb (Ras Homolog 100.0 4.9E-29 1.1E-33 177.5 20.8 164 11-175 2-166 (180)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9.4E-30 2E-34 181.6 15.9 165 9-176 2-174 (183)
98 PLN00223 ADP-ribosylation fact 100.0 1.7E-29 3.6E-34 179.8 17.0 157 8-174 15-180 (181)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.2E-30 4.8E-35 181.7 12.1 152 13-169 2-163 (164)
100 cd01870 RhoA_like RhoA-like su 100.0 1.1E-28 2.5E-33 174.7 21.0 159 11-171 2-174 (175)
101 cd04149 Arf6 Arf6 subfamily. 100.0 1.1E-29 2.4E-34 178.8 15.5 154 9-169 8-167 (168)
102 smart00177 ARF ARF-like small 100.0 6.1E-30 1.3E-34 181.3 13.8 157 8-171 11-173 (175)
103 cd00157 Rho Rho (Ras homology) 100.0 2.8E-28 6E-33 172.0 20.4 157 11-169 1-170 (171)
104 PTZ00132 GTP-binding nuclear p 100.0 4E-28 8.6E-33 177.4 21.8 167 5-174 4-170 (215)
105 cd04158 ARD1 ARD1 subfamily. 100.0 7.3E-29 1.6E-33 174.9 17.1 157 12-175 1-164 (169)
106 PTZ00133 ADP-ribosylation fact 100.0 1.6E-29 3.4E-34 180.2 13.8 161 8-175 15-181 (182)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.2E-29 2.7E-34 177.1 12.6 152 11-169 1-158 (159)
108 KOG0395 Ras-related GTPase [Ge 100.0 1.5E-28 3.3E-33 175.7 18.1 164 9-173 2-166 (196)
109 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.1E-28 6.8E-33 175.2 19.5 160 11-170 1-198 (202)
110 cd04154 Arl2 Arl2 subfamily. 100.0 9.8E-29 2.1E-33 174.9 15.9 156 7-169 11-172 (173)
111 cd01893 Miro1 Miro1 subfamily. 100.0 5.4E-28 1.2E-32 170.0 18.4 160 11-173 1-165 (166)
112 KOG4252 GTP-binding protein [S 100.0 1.3E-30 2.7E-35 176.7 4.1 169 8-177 18-186 (246)
113 KOG0393 Ras-related small GTPa 100.0 3.1E-28 6.8E-33 170.7 13.5 167 8-176 2-183 (198)
114 cd04157 Arl6 Arl6 subfamily. 100.0 3.3E-28 7.1E-33 170.2 12.8 152 12-169 1-161 (162)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 6.8E-28 1.5E-32 169.6 13.6 153 12-169 1-166 (167)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.5E-28 1.8E-32 167.9 13.6 152 12-169 1-159 (160)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.8E-27 4E-32 168.5 15.1 154 9-169 14-173 (174)
118 PF00025 Arf: ADP-ribosylation 100.0 3.8E-27 8.2E-32 166.8 16.7 158 7-171 11-175 (175)
119 KOG0073 GTP-binding ADP-ribosy 100.0 5.1E-27 1.1E-31 156.9 15.0 163 7-174 13-180 (185)
120 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3.1E-27 6.6E-32 164.7 13.4 151 12-169 1-157 (158)
121 cd00879 Sar1 Sar1 subfamily. 100.0 8.3E-27 1.8E-31 167.4 15.8 157 8-171 17-190 (190)
122 cd04160 Arfrp1 Arfrp1 subfamil 100.0 4.7E-27 1E-31 165.2 14.2 152 12-169 1-166 (167)
123 cd04151 Arl1 Arl1 subfamily. 100.0 3.7E-27 8E-32 164.4 13.1 151 12-169 1-157 (158)
124 PTZ00099 rab6; Provisional 99.9 9E-26 2E-30 159.6 20.1 143 33-175 3-145 (176)
125 PLN00023 GTP-binding protein; 99.9 3.7E-26 8.1E-31 172.2 18.6 141 7-147 18-189 (334)
126 smart00178 SAR Sar1p-like memb 99.9 1.8E-26 3.8E-31 164.8 13.9 156 8-170 15-183 (184)
127 cd04159 Arl10_like Arl10-like 99.9 6E-26 1.3E-30 157.8 14.1 151 13-169 2-158 (159)
128 cd04155 Arl3 Arl3 subfamily. 99.9 2E-25 4.3E-30 157.8 15.8 156 4-169 8-172 (173)
129 cd01897 NOG NOG1 is a nucleola 99.9 2E-25 4.4E-30 157.0 15.6 156 11-171 1-167 (168)
130 cd01890 LepA LepA subfamily. 99.9 1.7E-25 3.8E-30 159.0 15.3 154 12-171 2-176 (179)
131 cd01898 Obg Obg subfamily. Th 99.9 1.4E-25 3.1E-30 158.1 14.7 158 12-171 2-170 (170)
132 TIGR00231 small_GTP small GTP- 99.9 8.4E-25 1.8E-29 151.7 17.3 158 10-168 1-160 (161)
133 KOG0070 GTP-binding ADP-ribosy 99.9 9.9E-26 2.1E-30 154.4 12.1 163 7-174 14-180 (181)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 6.7E-25 1.4E-29 168.8 16.7 162 11-173 159-329 (335)
135 cd01878 HflX HflX subfamily. 99.9 3.5E-25 7.6E-30 160.7 14.0 157 8-171 39-204 (204)
136 cd04171 SelB SelB subfamily. 99.9 2.1E-24 4.5E-29 151.1 14.8 152 11-169 1-163 (164)
137 cd00882 Ras_like_GTPase Ras-li 99.9 8.7E-24 1.9E-28 145.4 16.6 153 15-168 1-156 (157)
138 COG1100 GTPase SAR1 and relate 99.9 2E-23 4.4E-28 153.0 18.8 166 10-175 5-188 (219)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.1E-23 2.5E-28 148.0 14.6 157 12-172 2-166 (168)
140 TIGR02528 EutP ethanolamine ut 99.9 2.3E-24 4.9E-29 147.7 10.4 134 12-168 2-141 (142)
141 cd01879 FeoB Ferrous iron tran 99.9 2.6E-23 5.7E-28 144.7 15.2 148 15-171 1-156 (158)
142 cd01891 TypA_BipA TypA (tyrosi 99.9 6.8E-24 1.5E-28 152.7 12.5 160 11-174 3-190 (194)
143 PRK04213 GTP-binding protein; 99.9 2.4E-24 5.3E-29 155.9 10.1 155 8-175 7-195 (201)
144 TIGR02729 Obg_CgtA Obg family 99.9 3.4E-23 7.3E-28 159.3 16.1 159 11-171 158-328 (329)
145 TIGR03156 GTP_HflX GTP-binding 99.9 1.6E-23 3.5E-28 162.3 14.3 153 10-170 189-350 (351)
146 PF02421 FeoB_N: Ferrous iron 99.9 1.9E-23 4.1E-28 143.1 13.0 148 11-167 1-156 (156)
147 TIGR00436 era GTP-binding prot 99.9 1.7E-23 3.8E-28 157.7 13.8 158 12-176 2-168 (270)
148 PF08477 Miro: Miro-like prote 99.9 4.7E-23 1E-27 137.0 12.9 114 12-126 1-119 (119)
149 cd01881 Obg_like The Obg-like 99.9 3E-23 6.5E-28 146.9 12.1 155 15-170 1-175 (176)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8E-23 1.7E-27 141.9 13.6 146 11-171 2-156 (157)
151 PRK15494 era GTPase Era; Provi 99.9 1.9E-22 4.1E-27 156.1 16.3 159 8-177 50-221 (339)
152 KOG1673 Ras GTPases [General f 99.9 2.5E-22 5.3E-27 133.4 12.9 170 5-175 15-189 (205)
153 KOG3883 Ras family small GTPas 99.9 2.7E-21 5.8E-26 128.2 17.5 168 8-175 7-178 (198)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.4E-22 7.3E-27 159.1 15.8 153 9-175 202-363 (442)
155 cd00881 GTP_translation_factor 99.9 3.5E-22 7.6E-27 142.9 14.3 157 12-172 1-187 (189)
156 PRK12297 obgE GTPase CgtA; Rev 99.9 1.3E-21 2.8E-26 154.3 18.4 159 12-175 160-330 (424)
157 cd01888 eIF2_gamma eIF2-gamma 99.9 1.7E-22 3.7E-27 146.3 12.3 161 11-173 1-200 (203)
158 KOG0071 GTP-binding ADP-ribosy 99.9 9E-23 1.9E-27 133.2 9.5 159 8-173 15-179 (180)
159 cd01894 EngA1 EngA1 subfamily. 99.9 1.7E-22 3.7E-27 140.3 11.5 147 14-171 1-157 (157)
160 TIGR01393 lepA GTP-binding pro 99.9 7.2E-22 1.6E-26 162.3 16.7 158 10-173 3-181 (595)
161 PRK15467 ethanolamine utilizat 99.9 3.6E-22 7.8E-27 139.0 12.7 143 12-176 3-151 (158)
162 PRK11058 GTPase HflX; Provisio 99.9 8.3E-22 1.8E-26 156.1 16.4 158 11-174 198-364 (426)
163 KOG0075 GTP-binding ADP-ribosy 99.9 1.9E-23 4E-28 137.4 5.7 156 9-173 19-183 (186)
164 PRK05291 trmE tRNA modificatio 99.9 2.7E-22 5.8E-27 160.5 13.1 149 9-173 214-371 (449)
165 PRK00454 engB GTP-binding prot 99.9 1.1E-21 2.3E-26 141.4 14.7 162 5-173 19-195 (196)
166 cd01889 SelB_euk SelB subfamil 99.9 5.2E-22 1.1E-26 142.7 12.9 159 11-173 1-187 (192)
167 PRK03003 GTP-binding protein D 99.9 3.2E-22 6.9E-27 161.4 12.8 164 9-178 210-388 (472)
168 PRK12296 obgE GTPase CgtA; Rev 99.9 1.9E-21 4.2E-26 155.1 16.6 163 10-175 159-343 (500)
169 PRK03003 GTP-binding protein D 99.9 5.8E-22 1.3E-26 160.0 13.8 155 10-173 38-200 (472)
170 TIGR03594 GTPase_EngA ribosome 99.9 2E-21 4.4E-26 155.7 16.6 164 8-177 170-349 (429)
171 cd04163 Era Era subfamily. Er 99.9 3.5E-21 7.7E-26 134.7 14.3 156 10-170 3-167 (168)
172 PRK00089 era GTPase Era; Revie 99.9 5E-21 1.1E-25 146.1 16.0 162 9-175 4-174 (292)
173 PRK12298 obgE GTPase CgtA; Rev 99.9 6.5E-21 1.4E-25 149.5 16.8 163 12-176 161-337 (390)
174 TIGR00487 IF-2 translation ini 99.9 7.1E-21 1.5E-25 155.9 17.6 154 9-170 86-248 (587)
175 KOG0076 GTP-binding ADP-ribosy 99.9 1.9E-22 4.1E-27 136.3 6.6 162 8-174 15-189 (197)
176 TIGR00475 selB selenocysteine- 99.9 4.8E-21 1E-25 157.4 15.9 159 11-175 1-169 (581)
177 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.3E-21 2.9E-26 134.1 10.0 171 1-174 1-171 (216)
178 PF00009 GTP_EFTU: Elongation 99.9 1.8E-21 3.9E-26 139.4 10.9 160 9-172 2-187 (188)
179 cd01895 EngA2 EngA2 subfamily. 99.9 9.6E-21 2.1E-25 133.5 14.4 155 10-170 2-173 (174)
180 PRK09554 feoB ferrous iron tra 99.9 3.4E-20 7.4E-25 155.9 17.8 154 10-172 3-168 (772)
181 TIGR03598 GTPase_YsxC ribosome 99.9 1E-20 2.2E-25 134.5 12.5 149 6-161 14-179 (179)
182 cd04105 SR_beta Signal recogni 99.9 2.7E-20 5.9E-25 134.7 14.9 117 12-129 2-123 (203)
183 cd00880 Era_like Era (E. coli 99.9 1.2E-20 2.5E-25 130.9 12.2 151 15-170 1-162 (163)
184 COG1159 Era GTPase [General fu 99.9 1.2E-20 2.6E-25 139.1 12.3 165 8-177 4-177 (298)
185 CHL00189 infB translation init 99.9 1.5E-20 3.2E-25 156.3 14.4 157 9-171 243-409 (742)
186 PRK05306 infB translation init 99.9 1.9E-20 4.2E-25 156.8 14.9 157 8-170 288-450 (787)
187 PRK05433 GTP-binding protein L 99.9 2.9E-20 6.4E-25 153.0 15.7 160 9-174 6-186 (600)
188 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-20 3.3E-25 150.7 13.6 152 12-173 1-161 (429)
189 KOG0074 GTP-binding ADP-ribosy 99.9 1.1E-20 2.3E-25 123.7 10.2 161 6-170 13-177 (185)
190 TIGR00437 feoB ferrous iron tr 99.8 3.9E-20 8.5E-25 152.2 15.4 146 17-171 1-154 (591)
191 PRK00093 GTP-binding protein D 99.8 5.3E-20 1.2E-24 147.7 15.4 161 9-175 172-347 (435)
192 PRK00093 GTP-binding protein D 99.8 6.9E-20 1.5E-24 147.0 15.7 148 11-171 2-161 (435)
193 PRK09518 bifunctional cytidyla 99.8 1E-19 2.2E-24 153.3 15.2 156 9-173 274-437 (712)
194 TIGR00483 EF-1_alpha translati 99.8 6.5E-20 1.4E-24 146.5 13.2 156 7-164 4-199 (426)
195 COG2229 Predicted GTPase [Gene 99.8 3.6E-19 7.7E-24 122.1 14.6 160 6-170 6-176 (187)
196 PRK12317 elongation factor 1-a 99.8 8.7E-20 1.9E-24 145.8 13.6 156 7-164 3-197 (425)
197 TIGR03680 eif2g_arch translati 99.8 7.5E-20 1.6E-24 145.1 12.7 163 8-172 2-196 (406)
198 COG0486 ThdF Predicted GTPase 99.8 1.4E-19 3.1E-24 140.7 13.2 155 9-174 216-378 (454)
199 TIGR00491 aIF-2 translation in 99.8 3.7E-19 8E-24 145.7 15.1 157 10-173 4-217 (590)
200 PRK04000 translation initiatio 99.8 2.2E-19 4.7E-24 142.4 13.2 168 4-173 3-202 (411)
201 TIGR01394 TypA_BipA GTP-bindin 99.8 1.8E-19 4E-24 147.9 13.2 160 11-174 2-193 (594)
202 cd01896 DRG The developmentall 99.8 2.7E-18 5.8E-23 126.6 17.8 151 12-171 2-225 (233)
203 COG1160 Predicted GTPases [Gen 99.8 2.3E-19 5E-24 139.2 12.2 153 11-172 4-165 (444)
204 PRK09518 bifunctional cytidyla 99.8 5.6E-19 1.2E-23 148.8 15.3 161 10-177 450-626 (712)
205 KOG0072 GTP-binding ADP-ribosy 99.8 3.5E-20 7.6E-25 121.7 5.8 161 9-174 17-181 (182)
206 PRK10218 GTP-binding protein; 99.8 1.1E-18 2.4E-23 143.3 15.9 161 10-174 5-197 (607)
207 cd01876 YihA_EngB The YihA (En 99.8 8.8E-19 1.9E-23 122.8 13.4 151 12-171 1-170 (170)
208 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.6E-18 3.4E-23 124.4 14.4 147 10-160 2-171 (195)
209 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.9E-19 8.4E-24 129.2 11.0 149 12-163 1-185 (208)
210 KOG1423 Ras-like GTPase ERA [C 99.8 1.3E-18 2.8E-23 128.2 13.4 172 5-180 67-279 (379)
211 PRK10512 selenocysteinyl-tRNA- 99.8 2.3E-18 5E-23 142.2 15.5 157 12-173 2-167 (614)
212 KOG4423 GTP-binding protein-li 99.8 6.5E-21 1.4E-25 130.4 -0.1 170 8-177 23-199 (229)
213 COG1160 Predicted GTPases [Gen 99.8 5E-18 1.1E-22 131.8 15.4 168 9-181 177-360 (444)
214 PRK04004 translation initiatio 99.8 5.2E-18 1.1E-22 139.4 16.4 157 9-172 5-218 (586)
215 PRK12736 elongation factor Tu; 99.8 3.6E-18 7.7E-23 135.1 14.9 162 7-172 9-201 (394)
216 cd04168 TetM_like Tet(M)-like 99.8 2.7E-18 5.9E-23 126.8 12.1 113 12-128 1-129 (237)
217 PRK12735 elongation factor Tu; 99.8 8.5E-18 1.8E-22 133.0 15.0 162 7-172 9-203 (396)
218 cd04167 Snu114p Snu114p subfam 99.8 3.5E-18 7.5E-23 124.7 11.9 113 12-128 2-136 (213)
219 cd01883 EF1_alpha Eukaryotic e 99.8 1.1E-18 2.4E-23 127.8 9.3 148 12-161 1-194 (219)
220 COG0370 FeoB Fe2+ transport sy 99.8 5.4E-18 1.2E-22 137.2 13.7 157 10-175 3-167 (653)
221 KOG1489 Predicted GTP-binding 99.8 1.2E-17 2.6E-22 123.7 14.0 156 11-170 197-365 (366)
222 TIGR00485 EF-Tu translation el 99.8 6.9E-18 1.5E-22 133.6 13.8 148 7-158 9-179 (394)
223 COG2262 HflX GTPases [General 99.8 1.7E-17 3.7E-22 127.1 15.3 162 9-176 191-360 (411)
224 PF10662 PduV-EutP: Ethanolami 99.8 2.2E-18 4.8E-23 115.6 9.2 135 12-168 3-142 (143)
225 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.8E-17 4E-22 121.3 13.8 153 12-169 1-220 (224)
226 CHL00071 tufA elongation facto 99.8 1.8E-17 3.8E-22 131.7 14.7 149 7-159 9-180 (409)
227 COG0218 Predicted GTPase [Gene 99.8 4E-17 8.6E-22 114.5 13.8 158 9-173 23-198 (200)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.7E-17 3.6E-22 121.1 11.9 168 12-182 1-186 (232)
229 PRK00049 elongation factor Tu; 99.8 4.3E-17 9.2E-22 129.0 15.2 160 7-170 9-201 (396)
230 PLN03127 Elongation factor Tu; 99.7 8E-17 1.7E-21 128.7 14.6 162 7-172 58-252 (447)
231 COG1084 Predicted GTPase [Gene 99.7 5.1E-17 1.1E-21 121.1 12.5 159 10-173 168-337 (346)
232 cd04169 RF3 RF3 subfamily. Pe 99.7 1.8E-16 4E-21 119.0 14.2 116 11-130 3-138 (267)
233 PLN03126 Elongation factor Tu; 99.7 1.4E-16 3.1E-21 128.0 14.2 149 7-159 78-249 (478)
234 COG0532 InfB Translation initi 99.7 2.8E-16 6.1E-21 124.1 15.1 158 10-174 5-172 (509)
235 cd01850 CDC_Septin CDC/Septin. 99.7 4.4E-16 9.6E-21 117.4 15.0 143 9-156 3-186 (276)
236 PLN00043 elongation factor 1-a 99.7 1.5E-16 3.2E-21 127.3 13.0 152 7-162 4-203 (447)
237 cd04104 p47_IIGP_like p47 (47- 99.7 5.4E-16 1.2E-20 111.8 14.7 158 10-174 1-186 (197)
238 PTZ00327 eukaryotic translatio 99.7 1.4E-16 3.1E-21 127.2 12.5 166 6-173 30-234 (460)
239 PRK00741 prfC peptide chain re 99.7 4E-16 8.7E-21 126.8 14.2 117 8-128 8-144 (526)
240 KOG1707 Predicted Ras related/ 99.7 8.8E-17 1.9E-21 127.5 9.9 163 7-171 6-174 (625)
241 cd01885 EF2 EF2 (for archaea a 99.7 2.2E-16 4.7E-21 115.3 11.3 113 12-128 2-138 (222)
242 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.5E-16 1.2E-20 111.8 13.1 163 11-175 1-187 (196)
243 PTZ00141 elongation factor 1- 99.7 3.8E-16 8.3E-21 125.0 13.2 153 7-162 4-203 (446)
244 cd01899 Ygr210 Ygr210 subfamil 99.7 4.4E-16 9.5E-21 119.2 12.7 159 13-174 1-271 (318)
245 COG0536 Obg Predicted GTPase [ 99.7 5.9E-16 1.3E-20 116.1 13.0 163 12-175 161-336 (369)
246 PRK05124 cysN sulfate adenylyl 99.7 3.6E-16 7.8E-21 126.0 12.7 154 7-163 24-216 (474)
247 KOG0462 Elongation factor-type 99.7 6.1E-16 1.3E-20 122.0 13.0 162 10-175 60-238 (650)
248 cd04170 EF-G_bact Elongation f 99.7 6.9E-17 1.5E-21 121.8 7.5 151 12-168 1-169 (268)
249 cd01886 EF-G Elongation factor 99.7 2.4E-16 5.3E-21 118.4 10.3 114 12-129 1-130 (270)
250 COG0481 LepA Membrane GTPase L 99.7 1.7E-15 3.8E-20 117.8 15.0 164 9-178 8-192 (603)
251 TIGR02034 CysN sulfate adenyly 99.7 3.6E-16 7.8E-21 124.1 11.4 149 11-162 1-187 (406)
252 KOG1191 Mitochondrial GTPase [ 99.7 1.4E-16 3E-21 124.3 8.6 168 8-177 266-455 (531)
253 KOG0077 Vesicle coat complex C 99.7 2.7E-16 5.9E-21 105.9 7.5 156 9-171 19-192 (193)
254 TIGR00503 prfC peptide chain r 99.7 1.6E-15 3.5E-20 123.4 13.4 116 8-127 9-144 (527)
255 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-15 2.4E-20 101.0 9.9 106 12-124 1-116 (116)
256 COG3596 Predicted GTPase [Gene 99.7 5.4E-16 1.2E-20 113.2 8.8 165 7-174 36-224 (296)
257 COG1163 DRG Predicted GTPase [ 99.7 1.1E-14 2.3E-19 108.6 15.6 155 10-173 63-290 (365)
258 PRK05506 bifunctional sulfate 99.7 1.5E-15 3.1E-20 126.9 12.4 154 6-162 20-211 (632)
259 PRK13351 elongation factor G; 99.7 1.4E-15 3E-20 128.3 12.4 118 8-129 6-139 (687)
260 KOG1145 Mitochondrial translat 99.6 6.6E-15 1.4E-19 116.3 14.3 159 9-174 152-318 (683)
261 PF09439 SRPRB: Signal recogni 99.6 2.9E-16 6.2E-21 110.0 5.7 117 10-130 3-127 (181)
262 PRK09866 hypothetical protein; 99.6 1.4E-14 3.1E-19 117.5 14.2 110 59-170 230-351 (741)
263 PRK12739 elongation factor G; 99.6 1.3E-14 2.8E-19 122.2 14.6 118 7-128 5-138 (691)
264 TIGR00484 EF-G translation elo 99.6 6.5E-15 1.4E-19 124.1 12.7 123 4-130 4-142 (689)
265 COG5256 TEF1 Translation elong 99.6 8.1E-15 1.8E-19 112.6 11.4 155 7-163 4-202 (428)
266 PRK09602 translation-associate 99.6 5E-14 1.1E-18 111.0 14.1 83 11-93 2-113 (396)
267 PRK00007 elongation factor G; 99.6 6.1E-14 1.3E-18 118.2 15.0 119 6-128 6-140 (693)
268 TIGR00101 ureG urease accessor 99.5 2.7E-13 5.9E-18 97.6 12.3 103 59-172 92-196 (199)
269 cd00066 G-alpha G protein alph 99.5 6.2E-13 1.3E-17 102.4 14.8 118 57-174 159-313 (317)
270 KOG0090 Signal recognition par 99.5 6.1E-14 1.3E-18 98.7 8.2 115 10-129 38-159 (238)
271 PF04548 AIG1: AIG1 family; I 99.5 1.5E-13 3.2E-18 100.2 10.4 163 11-176 1-190 (212)
272 PRK12740 elongation factor G; 99.5 2.4E-13 5.2E-18 114.6 12.8 109 16-128 1-125 (668)
273 PRK14845 translation initiatio 99.5 6E-13 1.3E-17 114.7 15.0 145 22-173 473-674 (1049)
274 COG1217 TypA Predicted membran 99.5 6.4E-13 1.4E-17 103.5 12.5 168 10-181 5-204 (603)
275 COG5257 GCD11 Translation init 99.5 2.3E-13 4.9E-18 101.5 9.4 177 1-179 1-209 (415)
276 cd01853 Toc34_like Toc34-like 99.5 3.6E-13 7.8E-18 100.0 10.5 120 7-128 28-162 (249)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.5 8.2E-13 1.8E-17 99.7 11.9 120 8-128 36-166 (313)
278 KOG1490 GTP-binding protein CR 99.5 1.6E-13 3.4E-18 107.6 8.0 163 9-174 167-343 (620)
279 PRK09435 membrane ATPase/prote 99.5 1.4E-12 3E-17 100.2 13.1 106 58-175 148-263 (332)
280 TIGR00490 aEF-2 translation el 99.5 2.5E-13 5.4E-18 114.9 9.1 117 8-128 17-151 (720)
281 smart00275 G_alpha G protein a 99.5 2.3E-12 5E-17 100.0 13.3 118 57-174 182-336 (342)
282 PF05783 DLIC: Dynein light in 99.4 6.4E-12 1.4E-16 100.6 15.0 165 8-175 23-267 (472)
283 TIGR00157 ribosome small subun 99.4 7.9E-13 1.7E-17 98.2 9.2 96 70-169 24-120 (245)
284 smart00010 small_GTPase Small 99.4 9.5E-13 2.1E-17 87.7 8.6 114 11-161 1-115 (124)
285 COG2895 CysN GTPases - Sulfate 99.4 2.8E-12 6.2E-17 96.8 11.8 151 8-161 4-192 (431)
286 PRK13768 GTPase; Provisional 99.4 9.4E-13 2E-17 98.3 9.4 113 60-173 98-248 (253)
287 TIGR00073 hypB hydrogenase acc 99.4 3.8E-12 8.3E-17 92.5 11.5 151 9-170 21-205 (207)
288 PTZ00258 GTP-binding protein; 99.4 6.5E-12 1.4E-16 98.2 13.3 86 8-93 19-126 (390)
289 COG4108 PrfC Peptide chain rel 99.4 4.6E-12 1E-16 98.1 12.1 115 9-127 11-145 (528)
290 KOG1707 Predicted Ras related/ 99.4 1.5E-11 3.3E-16 98.2 15.2 163 8-175 423-586 (625)
291 KOG0461 Selenocysteine-specifi 99.4 6.4E-12 1.4E-16 94.7 12.4 162 8-174 5-195 (522)
292 COG4917 EutP Ethanolamine util 99.4 8.7E-13 1.9E-17 85.1 6.7 136 12-169 3-143 (148)
293 cd01882 BMS1 Bms1. Bms1 is an 99.4 7.5E-12 1.6E-16 92.0 12.0 140 7-158 36-182 (225)
294 KOG1144 Translation initiation 99.4 3.4E-12 7.4E-17 104.2 10.7 161 9-176 474-691 (1064)
295 KOG3905 Dynein light intermedi 99.4 1.4E-11 3.1E-16 92.2 12.9 163 9-174 51-292 (473)
296 KOG1532 GTPase XAB1, interacts 99.4 6.1E-13 1.3E-17 97.2 5.1 117 58-177 115-269 (366)
297 COG0378 HypB Ni2+-binding GTPa 99.4 3E-12 6.6E-17 89.4 7.9 151 10-171 13-200 (202)
298 PLN00116 translation elongatio 99.4 2.4E-12 5.1E-17 110.6 8.7 117 8-128 17-163 (843)
299 KOG0458 Elongation factor 1 al 99.4 1.6E-11 3.5E-16 98.0 12.2 155 7-163 174-373 (603)
300 PRK07560 elongation factor EF- 99.4 7.5E-12 1.6E-16 106.3 11.0 116 9-128 19-152 (731)
301 PRK09601 GTP-binding protein Y 99.3 2.9E-11 6.2E-16 93.7 13.0 83 11-93 3-107 (364)
302 PTZ00416 elongation factor 2; 99.3 4.2E-12 9E-17 109.0 9.1 117 8-128 17-157 (836)
303 PF05049 IIGP: Interferon-indu 99.3 1.8E-11 4E-16 94.8 10.2 158 9-173 34-219 (376)
304 TIGR02836 spore_IV_A stage IV 99.3 2.4E-10 5.3E-15 88.9 15.5 157 9-170 16-235 (492)
305 KOG3886 GTP-binding protein [S 99.3 1.6E-11 3.5E-16 87.7 7.0 157 10-169 4-175 (295)
306 PF03029 ATP_bind_1: Conserved 99.3 1.6E-12 3.4E-17 96.0 1.8 111 60-171 92-236 (238)
307 COG0480 FusA Translation elong 99.3 8.3E-11 1.8E-15 98.2 12.0 125 1-129 1-142 (697)
308 cd01900 YchF YchF subfamily. 99.3 6.2E-11 1.3E-15 89.0 10.3 81 13-93 1-103 (274)
309 TIGR00750 lao LAO/AO transport 99.3 8E-11 1.7E-15 90.2 11.0 105 58-173 126-239 (300)
310 PF00735 Septin: Septin; Inte 99.2 1.7E-10 3.6E-15 87.2 11.8 142 9-155 3-184 (281)
311 COG1703 ArgK Putative periplas 99.2 9.9E-11 2.2E-15 87.0 10.2 107 58-175 143-257 (323)
312 KOG0082 G-protein alpha subuni 99.2 1.1E-10 2.4E-15 89.4 10.7 118 57-174 193-346 (354)
313 COG3276 SelB Selenocysteine-sp 99.2 1.3E-10 2.8E-15 90.4 11.0 158 12-172 2-162 (447)
314 PF03308 ArgK: ArgK protein; 99.2 1.1E-11 2.4E-16 90.7 4.1 155 9-174 28-232 (266)
315 KOG3887 Predicted small GTPase 99.2 1.4E-10 3.1E-15 83.5 9.4 165 10-177 27-207 (347)
316 PF00350 Dynamin_N: Dynamin fa 99.2 2.1E-10 4.6E-15 80.5 9.8 62 61-125 103-168 (168)
317 KOG0410 Predicted GTP binding 99.2 2.7E-11 5.9E-16 90.6 5.2 158 9-177 177-346 (410)
318 TIGR00993 3a0901s04IAP86 chlor 99.2 3.7E-10 8.1E-15 92.6 12.0 120 8-129 116-250 (763)
319 COG0050 TufB GTPases - transla 99.2 2E-10 4.3E-15 85.0 9.2 171 7-181 9-206 (394)
320 KOG1486 GTP-binding protein DR 99.2 5.5E-09 1.2E-13 76.0 15.4 155 10-173 62-289 (364)
321 smart00053 DYNc Dynamin, GTPas 99.1 5E-10 1.1E-14 82.5 9.8 68 59-129 125-206 (240)
322 PRK10463 hydrogenase nickel in 99.1 2.5E-10 5.5E-15 85.8 8.3 55 116-170 231-287 (290)
323 KOG0468 U5 snRNP-specific prot 99.1 4.5E-10 9.7E-15 91.2 9.1 116 8-127 126-261 (971)
324 COG0012 Predicted GTPase, prob 99.1 8.3E-09 1.8E-13 79.3 15.2 85 10-94 2-109 (372)
325 COG5019 CDC3 Septin family pro 99.1 5.8E-09 1.3E-13 79.7 13.2 139 8-151 21-200 (373)
326 PF00503 G-alpha: G-protein al 99.1 2.4E-09 5.3E-14 85.0 11.5 114 57-170 234-388 (389)
327 KOG0705 GTPase-activating prot 99.1 7.7E-10 1.7E-14 88.1 8.0 161 8-175 28-192 (749)
328 KOG2655 Septin family protein 99.0 1.5E-08 3.2E-13 78.0 13.6 145 8-157 19-202 (366)
329 KOG0460 Mitochondrial translat 99.0 7.1E-09 1.5E-13 78.4 10.7 173 7-182 51-251 (449)
330 cd01855 YqeH YqeH. YqeH is an 99.0 3.8E-09 8.2E-14 75.8 7.9 94 72-172 24-125 (190)
331 cd01859 MJ1464 MJ1464. This f 98.9 2.3E-09 5E-14 74.4 6.0 94 74-173 4-97 (156)
332 PRK12289 GTPase RsgA; Reviewed 98.9 7.2E-09 1.6E-13 80.7 9.0 92 74-170 81-173 (352)
333 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.9E-09 8.4E-14 72.1 6.3 55 12-70 85-139 (141)
334 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.4E-09 1.8E-13 78.6 8.5 88 77-169 73-161 (287)
335 cd04178 Nucleostemin_like Nucl 98.9 7.6E-09 1.6E-13 72.8 6.9 57 9-69 116-172 (172)
336 KOG1547 Septin CDC10 and relat 98.9 6.2E-08 1.3E-12 70.1 11.4 155 7-166 43-237 (336)
337 cd01858 NGP_1 NGP-1. Autoanti 98.9 9.1E-09 2E-13 71.5 7.1 57 9-69 101-157 (157)
338 PRK00098 GTPase RsgA; Reviewed 98.8 1.4E-08 3.1E-13 77.7 8.0 86 79-168 77-163 (298)
339 PRK12288 GTPase RsgA; Reviewed 98.8 4.1E-08 8.9E-13 76.4 9.4 88 80-170 118-206 (347)
340 PF03193 DUF258: Protein of un 98.8 7.6E-09 1.6E-13 71.4 4.5 60 11-73 36-101 (161)
341 COG5258 GTPBP1 GTPase [General 98.8 4E-08 8.7E-13 75.6 8.3 158 4-165 111-332 (527)
342 cd01855 YqeH YqeH. YqeH is an 98.8 1.7E-08 3.8E-13 72.3 6.0 57 10-69 127-190 (190)
343 KOG1954 Endocytosis/signaling 98.7 4.6E-08 9.9E-13 74.9 7.7 120 10-132 58-228 (532)
344 cd01856 YlqF YlqF. Proteins o 98.7 4.6E-08 1E-12 68.9 6.8 57 9-69 114-170 (171)
345 TIGR03597 GTPase_YqeH ribosome 98.7 5.3E-08 1.1E-12 76.5 7.4 95 69-170 50-151 (360)
346 KOG1487 GTP-binding protein DR 98.7 1E-07 2.2E-12 69.8 8.0 154 10-173 59-282 (358)
347 KOG1143 Predicted translation 98.7 8.8E-08 1.9E-12 73.5 7.9 150 9-163 166-379 (591)
348 TIGR03596 GTPase_YlqF ribosome 98.7 7E-08 1.5E-12 73.2 7.3 58 9-70 117-174 (276)
349 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.1E-08 2E-12 66.5 7.2 92 78-172 4-95 (157)
350 PRK09563 rbgA GTPase YlqF; Rev 98.7 9.3E-08 2E-12 72.9 7.8 58 9-70 120-177 (287)
351 COG5192 BMS1 GTP-binding prote 98.7 4.3E-07 9.4E-12 73.3 11.5 153 8-171 67-226 (1077)
352 PRK12288 GTPase RsgA; Reviewed 98.7 6.1E-08 1.3E-12 75.5 6.6 59 12-73 207-271 (347)
353 PF09547 Spore_IV_A: Stage IV 98.7 2.9E-06 6.3E-11 66.6 15.5 154 10-168 17-233 (492)
354 cd01859 MJ1464 MJ1464. This f 98.7 1.1E-07 2.5E-12 65.9 7.2 57 9-69 100-156 (156)
355 TIGR00092 GTP-binding protein 98.6 1.4E-07 3E-12 73.5 8.1 83 11-93 3-108 (368)
356 COG1161 Predicted GTPases [Gen 98.6 7.4E-08 1.6E-12 74.5 6.5 58 9-70 131-188 (322)
357 KOG2486 Predicted GTPase [Gene 98.6 4.4E-08 9.6E-13 72.3 4.9 157 7-170 133-314 (320)
358 cd01851 GBP Guanylate-binding 98.6 6.2E-07 1.3E-11 65.9 11.0 120 8-128 5-147 (224)
359 COG1162 Predicted GTPases [Gen 98.6 5.5E-08 1.2E-12 73.1 5.5 59 12-73 166-230 (301)
360 KOG0467 Translation elongation 98.6 1.7E-07 3.7E-12 77.6 7.8 115 8-126 7-135 (887)
361 cd01849 YlqF_related_GTPase Yl 98.6 1.4E-07 3E-12 65.4 6.2 57 9-69 99-155 (155)
362 cd01849 YlqF_related_GTPase Yl 98.6 3.2E-07 7E-12 63.6 8.1 85 84-172 1-85 (155)
363 TIGR03348 VI_IcmF type VI secr 98.6 1.3E-07 2.8E-12 84.5 7.4 113 13-129 114-257 (1169)
364 KOG1491 Predicted GTP-binding 98.6 2.8E-07 6.2E-12 69.9 7.8 86 9-94 19-126 (391)
365 KOG4273 Uncharacterized conser 98.6 1.4E-06 3E-11 63.7 10.9 159 11-171 5-221 (418)
366 PRK12289 GTPase RsgA; Reviewed 98.6 1.5E-07 3.2E-12 73.4 6.1 58 12-72 174-237 (352)
367 KOG0466 Translation initiation 98.6 9.5E-08 2.1E-12 71.5 4.6 169 7-177 35-246 (466)
368 TIGR00157 ribosome small subun 98.5 2.1E-07 4.6E-12 69.3 6.5 59 11-73 121-185 (245)
369 PRK10416 signal recognition pa 98.5 8.2E-08 1.8E-12 74.0 4.3 142 10-164 114-302 (318)
370 cd01856 YlqF YlqF. Proteins o 98.5 3.1E-07 6.8E-12 64.7 5.9 91 74-172 11-101 (171)
371 COG1618 Predicted nucleotide k 98.5 8.1E-06 1.8E-10 55.8 12.1 148 9-173 4-177 (179)
372 KOG0099 G protein subunit Galp 98.5 5.6E-07 1.2E-11 66.0 6.9 121 55-175 198-372 (379)
373 PRK14974 cell division protein 98.5 2.5E-07 5.4E-12 71.6 5.2 94 59-165 223-323 (336)
374 TIGR00064 ftsY signal recognit 98.5 2.2E-07 4.7E-12 70.2 4.5 94 58-164 154-260 (272)
375 TIGR03596 GTPase_YlqF ribosome 98.4 6.7E-07 1.4E-11 67.9 6.9 100 67-174 5-105 (276)
376 cd03112 CobW_like The function 98.4 1.3E-06 2.7E-11 60.8 7.1 64 58-127 86-158 (158)
377 KOG0463 GTP-binding protein GP 98.4 2E-06 4.4E-11 66.4 8.7 152 8-164 131-350 (641)
378 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1E-06 2.3E-11 60.0 6.5 75 78-158 7-83 (141)
379 PRK13796 GTPase YqeH; Provisio 98.4 6.8E-07 1.5E-11 70.4 5.9 57 11-70 161-221 (365)
380 COG0523 Putative GTPases (G3E 98.4 7.1E-06 1.5E-10 63.3 10.9 144 13-165 4-194 (323)
381 KOG0464 Elongation factor G [T 98.4 1.9E-07 4.1E-12 72.7 2.3 134 9-148 36-185 (753)
382 TIGR03597 GTPase_YqeH ribosome 98.4 1.2E-06 2.5E-11 69.0 6.7 58 11-71 155-216 (360)
383 cd01854 YjeQ_engC YjeQ/EngC. 98.4 1.3E-06 2.8E-11 66.7 6.5 60 11-73 162-227 (287)
384 KOG0085 G protein subunit Galp 98.3 7.5E-07 1.6E-11 64.3 4.7 120 55-174 195-351 (359)
385 COG3523 IcmF Type VI protein s 98.3 2.6E-06 5.7E-11 74.9 8.1 114 14-129 129-270 (1188)
386 KOG1424 Predicted GTP-binding 98.3 1.2E-06 2.5E-11 69.9 5.4 57 10-70 314-370 (562)
387 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.4E-06 3E-11 66.6 5.6 101 66-174 7-108 (287)
388 TIGR01425 SRP54_euk signal rec 98.3 6.6E-06 1.4E-10 65.6 9.6 113 10-128 100-252 (429)
389 KOG0448 Mitofusin 1 GTPase, in 98.3 1.3E-05 2.8E-10 66.1 11.2 66 60-129 207-275 (749)
390 PRK00098 GTPase RsgA; Reviewed 98.3 1.9E-06 4.1E-11 66.1 6.0 58 11-71 165-228 (298)
391 PRK01889 GTPase RsgA; Reviewed 98.3 4.8E-06 1E-10 65.4 8.2 84 79-168 109-193 (356)
392 PRK13796 GTPase YqeH; Provisio 98.2 6E-06 1.3E-10 65.1 8.2 83 81-170 67-157 (365)
393 KOG0465 Mitochondrial elongati 98.2 3.7E-06 8.1E-11 68.4 5.4 119 9-131 38-172 (721)
394 PRK14722 flhF flagellar biosyn 98.1 2.1E-05 4.6E-10 61.8 8.8 140 10-153 137-315 (374)
395 cd03115 SRP The signal recogni 98.1 1.4E-05 3.1E-10 56.3 7.3 84 58-151 82-171 (173)
396 cd03114 ArgK-like The function 98.1 2E-05 4.4E-10 54.1 7.6 58 58-126 91-148 (148)
397 PRK11537 putative GTP-binding 98.1 7.7E-05 1.7E-09 57.7 11.4 95 59-164 91-196 (318)
398 KOG0469 Elongation factor 2 [T 98.1 1.2E-05 2.6E-10 64.3 6.7 115 10-128 19-163 (842)
399 PF03266 NTPase_1: NTPase; In 98.1 1.3E-05 2.8E-10 56.3 6.2 135 12-160 1-163 (168)
400 KOG0447 Dynamin-like GTP bindi 98.1 8.6E-05 1.9E-09 60.2 11.4 79 59-140 412-504 (980)
401 PF02492 cobW: CobW/HypB/UreG, 98.1 5.7E-06 1.2E-10 58.7 4.3 68 59-131 85-157 (178)
402 PF00448 SRP54: SRP54-type pro 98.1 1E-06 2.2E-11 63.4 0.4 84 59-153 84-174 (196)
403 COG1162 Predicted GTPases [Gen 98.0 6.3E-05 1.4E-09 56.9 9.5 95 74-171 71-166 (301)
404 PRK13695 putative NTPase; Prov 98.0 0.00027 5.9E-09 49.9 12.3 22 11-32 1-22 (174)
405 PF06858 NOG1: Nucleolar GTP-b 98.0 3.4E-05 7.3E-10 43.3 5.7 44 82-126 13-58 (58)
406 PRK11889 flhF flagellar biosyn 98.0 1.4E-05 2.9E-10 63.0 5.6 134 10-153 241-411 (436)
407 KOG2485 Conserved ATP/GTP bind 98.0 1.3E-05 2.9E-10 60.3 4.8 62 8-70 141-207 (335)
408 PRK10867 signal recognition pa 97.9 1.1E-05 2.5E-10 64.6 4.4 87 58-154 183-275 (433)
409 COG3640 CooC CO dehydrogenase 97.9 0.00033 7.2E-09 51.1 11.4 62 61-128 136-198 (255)
410 PF11111 CENP-M: Centromere pr 97.9 0.0012 2.6E-08 45.9 13.6 142 9-175 14-156 (176)
411 PRK12727 flagellar biosynthesi 97.9 2.8E-05 6.1E-10 63.4 6.5 134 10-153 350-518 (559)
412 TIGR02475 CobW cobalamin biosy 97.9 0.00014 3.1E-09 56.8 10.2 21 13-33 7-27 (341)
413 PRK14721 flhF flagellar biosyn 97.9 1.1E-05 2.3E-10 64.3 3.7 133 10-153 191-360 (420)
414 PRK00771 signal recognition pa 97.9 2.1E-05 4.5E-10 63.2 5.3 136 9-154 94-267 (437)
415 cd03110 Fer4_NifH_child This p 97.9 0.00055 1.2E-08 48.4 11.9 86 57-151 91-176 (179)
416 PRK06995 flhF flagellar biosyn 97.9 2.3E-05 5E-10 63.5 5.1 22 11-32 257-278 (484)
417 TIGR00959 ffh signal recogniti 97.8 2.8E-05 6E-10 62.3 5.2 87 58-154 182-274 (428)
418 KOG2484 GTPase [General functi 97.8 1.7E-05 3.6E-10 61.7 3.7 58 8-69 250-307 (435)
419 cd02042 ParA ParA and ParB of 97.8 9.1E-05 2E-09 47.5 6.7 82 13-106 2-84 (104)
420 cd02038 FleN-like FleN is a me 97.8 7.6E-05 1.6E-09 50.7 6.6 107 14-128 4-110 (139)
421 KOG0459 Polypeptide release fa 97.8 2.5E-05 5.4E-10 60.9 4.6 156 7-165 76-279 (501)
422 COG1419 FlhF Flagellar GTP-bin 97.8 0.00012 2.7E-09 57.5 8.2 134 10-153 203-372 (407)
423 COG0563 Adk Adenylate kinase a 97.8 1.7E-05 3.7E-10 56.1 3.2 23 11-33 1-23 (178)
424 PRK14723 flhF flagellar biosyn 97.8 3.6E-05 7.9E-10 65.4 5.6 140 11-160 186-362 (767)
425 PF13207 AAA_17: AAA domain; P 97.8 1.9E-05 4.2E-10 52.1 3.3 22 12-33 1-22 (121)
426 PRK12726 flagellar biosynthesi 97.8 2.7E-05 5.9E-10 61.0 4.0 134 10-153 206-376 (407)
427 PF13555 AAA_29: P-loop contai 97.8 2.8E-05 6.1E-10 44.7 3.1 21 12-32 25-45 (62)
428 PRK08118 topology modulation p 97.8 2.4E-05 5.1E-10 54.9 3.4 22 12-33 3-24 (167)
429 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00026 5.6E-09 44.4 7.7 76 13-103 2-78 (99)
430 PRK12724 flagellar biosynthesi 97.7 0.0002 4.3E-09 57.0 8.2 134 10-153 223-393 (432)
431 PRK05703 flhF flagellar biosyn 97.7 0.00028 6E-09 56.8 9.2 86 58-153 299-391 (424)
432 cd00009 AAA The AAA+ (ATPases 97.7 0.00027 6E-09 47.6 8.1 25 10-34 19-43 (151)
433 PRK07261 topology modulation p 97.7 3.1E-05 6.6E-10 54.6 3.3 22 12-33 2-23 (171)
434 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00031 6.6E-09 49.8 8.0 23 12-34 27-49 (177)
435 PF13671 AAA_33: AAA domain; P 97.7 3.4E-05 7.4E-10 52.4 3.1 21 13-33 2-22 (143)
436 COG0194 Gmk Guanylate kinase [ 97.7 2.6E-05 5.5E-10 54.8 2.0 49 10-60 4-52 (191)
437 PRK06731 flhF flagellar biosyn 97.6 0.00026 5.7E-09 53.4 7.3 133 11-153 76-245 (270)
438 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00027 5.8E-09 47.4 6.3 24 11-34 23-46 (133)
439 COG1126 GlnQ ABC-type polar am 97.6 5.5E-05 1.2E-09 54.4 3.2 39 136-174 146-186 (240)
440 COG1136 SalX ABC-type antimicr 97.6 5.6E-05 1.2E-09 55.2 3.0 21 12-32 33-53 (226)
441 cd02019 NK Nucleoside/nucleoti 97.6 8E-05 1.7E-09 44.1 3.2 21 13-33 2-22 (69)
442 PRK01889 GTPase RsgA; Reviewed 97.6 9.9E-05 2.1E-09 58.1 4.2 24 11-34 196-219 (356)
443 PRK12723 flagellar biosynthesi 97.6 0.0014 3E-08 52.1 10.5 139 10-160 174-351 (388)
444 cd01131 PilT Pilus retraction 97.5 0.00032 6.8E-09 50.7 6.2 22 13-34 4-25 (198)
445 PF02367 UPF0079: Uncharacteri 97.5 0.00032 6.8E-09 46.4 5.6 24 11-34 16-39 (123)
446 COG1116 TauB ABC-type nitrate/ 97.5 7.8E-05 1.7E-09 54.8 2.9 21 13-33 32-52 (248)
447 PRK14737 gmk guanylate kinase; 97.5 8E-05 1.7E-09 53.2 3.0 23 11-33 5-27 (186)
448 PF13521 AAA_28: AAA domain; P 97.5 7.4E-05 1.6E-09 52.1 2.7 22 12-33 1-22 (163)
449 PRK10646 ADP-binding protein; 97.5 0.00087 1.9E-08 46.0 7.5 23 12-34 30-52 (153)
450 cd03111 CpaE_like This protein 97.5 0.00051 1.1E-08 44.3 6.1 100 16-124 6-106 (106)
451 PRK06217 hypothetical protein; 97.5 0.00013 2.8E-09 52.0 3.5 23 11-33 2-24 (183)
452 PF00005 ABC_tran: ABC transpo 97.5 0.00011 2.3E-09 49.6 2.9 23 12-34 13-35 (137)
453 cd00071 GMPK Guanosine monopho 97.5 0.00015 3.3E-09 49.1 3.6 21 13-33 2-22 (137)
454 PRK03839 putative kinase; Prov 97.5 0.00012 2.6E-09 51.9 3.3 22 12-33 2-23 (180)
455 PF13238 AAA_18: AAA domain; P 97.4 0.00012 2.6E-09 48.6 3.1 21 13-33 1-21 (129)
456 COG3840 ThiQ ABC-type thiamine 97.4 0.00014 3E-09 51.1 3.1 21 12-32 27-47 (231)
457 PRK14530 adenylate kinase; Pro 97.4 0.00014 3.1E-09 53.2 3.4 22 11-32 4-25 (215)
458 COG3638 ABC-type phosphate/pho 97.4 0.00013 2.8E-09 53.2 2.9 20 13-32 33-52 (258)
459 TIGR02322 phosphon_PhnN phosph 97.4 0.00015 3.2E-09 51.4 3.2 22 12-33 3-24 (179)
460 PRK10078 ribose 1,5-bisphospho 97.4 0.00015 3.3E-09 51.7 3.2 22 12-33 4-25 (186)
461 PRK14738 gmk guanylate kinase; 97.4 0.0002 4.3E-09 52.0 3.8 26 8-33 11-36 (206)
462 PF00004 AAA: ATPase family as 97.4 0.00017 3.8E-09 48.0 3.2 21 13-33 1-21 (132)
463 TIGR00235 udk uridine kinase. 97.4 0.00021 4.6E-09 51.9 3.9 25 9-33 5-29 (207)
464 COG0802 Predicted ATPase or ki 97.4 0.00081 1.8E-08 45.7 6.3 26 10-35 25-50 (149)
465 PRK13949 shikimate kinase; Pro 97.4 0.00018 3.9E-09 50.6 3.4 21 12-32 3-23 (169)
466 KOG3859 Septins (P-loop GTPase 97.4 0.00049 1.1E-08 51.4 5.6 62 7-68 39-104 (406)
467 KOG2423 Nucleolar GTPase [Gene 97.4 6.8E-05 1.5E-09 58.5 1.3 59 6-68 303-361 (572)
468 smart00382 AAA ATPases associa 97.4 0.0002 4.3E-09 47.9 3.3 25 11-35 3-27 (148)
469 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00018 4E-09 46.3 2.8 21 11-31 16-36 (107)
470 PRK14532 adenylate kinase; Pro 97.3 0.00021 4.5E-09 51.1 3.3 21 12-32 2-22 (188)
471 PF03215 Rad17: Rad17 cell cyc 97.3 0.0024 5.3E-08 52.7 9.7 22 12-33 47-68 (519)
472 TIGR01360 aden_kin_iso1 adenyl 97.3 0.0002 4.4E-09 51.0 3.0 21 12-32 5-25 (188)
473 cd02023 UMPK Uridine monophosp 97.3 0.00021 4.6E-09 51.5 3.2 21 13-33 2-22 (198)
474 KOG1534 Putative transcription 97.3 0.0014 3.1E-08 47.1 7.1 23 10-32 3-25 (273)
475 TIGR03263 guanyl_kin guanylate 97.3 0.00021 4.5E-09 50.6 3.0 22 12-33 3-24 (180)
476 PRK05480 uridine/cytidine kina 97.3 0.00029 6.3E-09 51.2 3.6 25 9-33 5-29 (209)
477 KOG3347 Predicted nucleotide k 97.3 0.0002 4.4E-09 48.4 2.6 25 8-32 5-29 (176)
478 PRK00625 shikimate kinase; Pro 97.3 0.00028 6E-09 49.8 3.3 21 12-32 2-22 (173)
479 PRK08233 hypothetical protein; 97.3 0.00032 6.9E-09 49.7 3.6 24 10-33 3-26 (182)
480 cd01130 VirB11-like_ATPase Typ 97.3 0.00029 6.3E-09 50.3 3.3 24 10-33 25-48 (186)
481 COG4598 HisP ABC-type histidin 97.3 0.00056 1.2E-08 48.1 4.5 39 136-174 162-202 (256)
482 cd02025 PanK Pantothenate kina 97.2 0.00026 5.6E-09 52.0 3.0 21 13-33 2-22 (220)
483 COG1120 FepC ABC-type cobalami 97.2 0.00025 5.5E-09 52.8 2.9 20 13-32 31-50 (258)
484 PRK02496 adk adenylate kinase; 97.2 0.00034 7.3E-09 49.8 3.5 22 11-32 2-23 (184)
485 PF07728 AAA_5: AAA domain (dy 97.2 0.00032 7E-09 47.5 3.2 22 12-33 1-22 (139)
486 PRK14531 adenylate kinase; Pro 97.2 0.00033 7.2E-09 49.9 3.4 23 11-33 3-25 (183)
487 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.0003 6.4E-09 51.5 3.2 23 12-34 32-54 (218)
488 PTZ00088 adenylate kinase 1; P 97.2 0.00033 7.1E-09 51.7 3.3 23 10-32 6-28 (229)
489 cd03238 ABC_UvrA The excision 97.2 0.00033 7.3E-09 49.5 3.3 21 11-31 22-42 (176)
490 PF03205 MobB: Molybdopterin g 97.2 0.00036 7.9E-09 47.4 3.3 22 12-33 2-23 (140)
491 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00031 6.8E-09 49.9 3.1 20 13-32 2-21 (183)
492 cd01428 ADK Adenylate kinase ( 97.2 0.00028 6E-09 50.6 2.8 22 12-33 1-22 (194)
493 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00033 7.2E-09 51.0 3.2 23 12-34 29-51 (211)
494 TIGR00960 3a0501s02 Type II (G 97.2 0.00033 7.1E-09 51.2 3.2 22 12-33 31-52 (216)
495 PF07015 VirC1: VirC1 protein; 97.2 0.0057 1.2E-07 44.8 9.5 103 58-165 83-187 (231)
496 PLN02200 adenylate kinase fami 97.2 0.00054 1.2E-08 50.8 4.3 24 9-32 42-65 (234)
497 PRK00300 gmk guanylate kinase; 97.2 0.00033 7.2E-09 50.7 3.1 24 10-33 5-28 (205)
498 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00034 7.4E-09 50.7 3.2 23 12-34 28-50 (205)
499 TIGR01166 cbiO cobalt transpor 97.2 0.00032 6.8E-09 50.2 2.9 22 12-33 20-41 (190)
500 COG3839 MalK ABC-type sugar tr 97.2 0.0003 6.5E-09 54.5 2.9 21 13-33 32-52 (338)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-42 Score=237.48 Aligned_cols=177 Identities=44% Similarity=0.713 Sum_probs=169.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~ 83 (199)
.+..+|.+||+|+|.+|||||.|+.|+.++.+.+.+.++++++...+.+.+++..+++++|||+|+++|..+..++++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCCCHHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNE 162 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~ 162 (199)
|++|+|||+++.+||+.+..|+.++..+...+.|.++|+||+|+.+.+.++..++..|+..++++ ++++||+++.++++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 029103 163 LFYEIAKRLAEVNPSRQT 180 (199)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~ 180 (199)
.|..|...+.++.+....
T Consensus 163 ~F~~la~~lk~~~~~~~~ 180 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHVK 180 (205)
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 999999999888655433
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-41 Score=230.36 Aligned_cols=191 Identities=57% Similarity=0.940 Sum_probs=173.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
..++||+++|..+||||||+-|+..+.|.+...++++-.+....+.+.+..+++.+|||+|+++|..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45899999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||+++.+||..++.|+.++.+...+++-+.+++||.|+.+.++++..++..++...+..++++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCC-------CccccccCCCCCCCCCCC
Q 029103 168 AKRLAEVNPSRQTG-------MKLHTESHGGGRRGFCCS 199 (199)
Q Consensus 168 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~cc~ 199 (199)
.+.+.+..+....+ ..+.+.. ...+..+|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCC-CCcCcCCcCC
Confidence 99999887665532 2222222 3445567886
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-39 Score=225.87 Aligned_cols=173 Identities=42% Similarity=0.723 Sum_probs=166.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+.++.+||+++|.+|||||+|+.++..+.+...+.+++++++..+++.+++..+.+++|||+|+++|.++...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++|||+++..|++.+..|+..+..+....+|.++|+||+|+.+.++++...++.++.++|+.++++||++|.||.+.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 029103 166 EIAKRLAEVNPSR 178 (199)
Q Consensus 166 ~l~~~~~~~~~~~ 178 (199)
.|.+.+..+.+..
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999999766553
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=215.94 Aligned_cols=198 Identities=39% Similarity=0.736 Sum_probs=173.0
Q ss_pred CCCCCC-CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 029103 1 MARTSN-KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 79 (199)
Q Consensus 1 m~~~~~-~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~ 79 (199)
|....+ ..+.+||+++|.+|||||||+.++..+.+.+....++++++....+.+++..+++-+|||+|+++|+.+.+.|
T Consensus 1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy 80 (209)
T KOG0080|consen 1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY 80 (209)
T ss_pred CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence 444433 3568999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
|+.+.++|+|||++.+++|..+..|++++..++ ++++..++|+||+|..+++.++.++...|++++++-++++||++.+
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 999999999999999999999999999998887 4777778999999999889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCC-----CCCCCccccccCCC--CCCCCCC
Q 029103 159 NVNELFYEIAKRLAEVNPS-----RQTGMKLHTESHGG--GRRGFCC 198 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~cc 198 (199)
++...|+.|++.+.+...- ...+..+.+.+..+ ....+||
T Consensus 161 ~V~~~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~C 207 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCC 207 (209)
T ss_pred cHHHHHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCcc
Confidence 9999999999999886422 33333333333333 3345688
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-39 Score=221.50 Aligned_cols=176 Identities=44% Similarity=0.732 Sum_probs=164.3
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~ 80 (199)
|++.......+||+++|..+||||||+.+++-+.+...+..+++++....++.+.+..+.+++|||+|+++|..+.+.|+
T Consensus 13 ~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~ 92 (221)
T KOG0094|consen 13 MATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 92 (221)
T ss_pred ccccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhc
Confidence 34455556679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNP-NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+++.++|+|||+++..+|+...+|++.+...... +..+++|+||.||.+.+++...++...+++++..|.++||+.|+|
T Consensus 93 Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~N 172 (221)
T KOG0094|consen 93 RDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGEN 172 (221)
T ss_pred cCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCC
Confidence 9999999999999999999999999999887665 477889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 029103 160 VNELFYEIAKRLAEVNP 176 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~~ 176 (199)
|+++|..|...+...+.
T Consensus 173 Vk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 173 VKQLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHHHHhccCccc
Confidence 99999999999887743
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.7e-37 Score=223.61 Aligned_cols=165 Identities=35% Similarity=0.689 Sum_probs=152.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+++||++|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888888888888888888888999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
|++++++++.+..|+..+......+.|+++|+||+|+.+.+++...++..+++.. ++.|+++||++|.|++++|++|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776678999999999999877888888888888875 789999999999999999999999
Q ss_pred HHHhhC
Q 029103 170 RLAEVN 175 (199)
Q Consensus 170 ~~~~~~ 175 (199)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 987754
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=8.6e-37 Score=218.08 Aligned_cols=168 Identities=30% Similarity=0.559 Sum_probs=154.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
++.+||+++|..|||||||+.++..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998887777778888887788888888999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+.++... .++.|+++|+||.|+.+.+.++..++..+++.++++|+++||++|.|++++|++|
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999999776 4689999999999998877888899999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 029103 168 AKRLAEVNP 176 (199)
Q Consensus 168 ~~~~~~~~~ 176 (199)
.+.+..+..
T Consensus 163 ~~~i~~~~~ 171 (189)
T cd04121 163 ARIVLMRHG 171 (189)
T ss_pred HHHHHHhcC
Confidence 998877554
No 8
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-37 Score=208.76 Aligned_cols=169 Identities=43% Similarity=0.758 Sum_probs=162.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.+|++++|..|||||+|+.+++...|.+.+..++++++-.+...+++..+++++|||+|++.+.+....|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++..++|..+..|+..++++..++..+++++||+|+...+.+..++.+.|++++++.+.++||+++++++|.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
+...+.+..
T Consensus 163 ta~~Iy~~~ 171 (216)
T KOG0098|consen 163 TAKEIYRKI 171 (216)
T ss_pred HHHHHHHHH
Confidence 988887764
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=206.85 Aligned_cols=170 Identities=37% Similarity=0.689 Sum_probs=157.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+||+++|.+|+|||||++++...+|...+..+++.+...+...+++..+.+++|||+|+++|.++...|++.+|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc--cccCCHHHHHHHHHHhC-CcEEEeccCCCCCH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEE--KRKVKNEEGELYAQENG-LSFLETSAKSAHNV 160 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v 160 (199)
+|||++++.+++.+..|.+++..+.. ...|++|++||+|+.+ .++++...+..++...+ ++||++|||...+|
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999876543 5789999999999875 37889999999998765 89999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 029103 161 NELFYEIAKRLAEVNPS 177 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~~~ 177 (199)
.+.|..+.+.+...+..
T Consensus 167 ~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 167 DEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999999987754
No 10
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.2e-36 Score=217.42 Aligned_cols=165 Identities=34% Similarity=0.671 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+..+ +..+.+.+||++|++.|..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988888788888888877777777 7789999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELF 164 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~ 164 (199)
||++++++++.+..|+..+.... ..++|+++|+||.|+.+.......+...+++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876532 3678999999999998666777888899999988 689999999999999999
Q ss_pred HHHHHHHHhhC
Q 029103 165 YEIAKRLAEVN 175 (199)
Q Consensus 165 ~~l~~~~~~~~ 175 (199)
++|.+.+.+..
T Consensus 161 ~~l~~~l~~~~ 171 (201)
T cd04107 161 RFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHhc
Confidence 99999997764
No 11
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.2e-35 Score=214.60 Aligned_cols=190 Identities=35% Similarity=0.620 Sum_probs=161.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
++.++|+|+|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999998887777888888887788888888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++++++.+..|+..+... ....|++||+||+|+.+.......+...++...+++|+++|+++|.|+.++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 999999999999999999998765 4678999999999998777777788888888889999999999999999999999
Q ss_pred HHHHHhhCCCCCCC------CccccccCCCCCCCCCC
Q 029103 168 AKRLAEVNPSRQTG------MKLHTESHGGGRRGFCC 198 (199)
Q Consensus 168 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~cc 198 (199)
...+.......... ......++..+++..||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 99998764332222 22333444545566787
No 12
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=2.6e-35 Score=215.24 Aligned_cols=174 Identities=41% Similarity=0.734 Sum_probs=156.5
Q ss_pred CCCCCCC--ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccc
Q 029103 1 MARTSNK--NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM 78 (199)
Q Consensus 1 m~~~~~~--~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~ 78 (199)
|+..... ++.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..
T Consensus 1 ~~~~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~ 80 (216)
T PLN03110 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA 80 (216)
T ss_pred CCCCcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 4444444 36799999999999999999999998887777888888888888888888899999999999999999999
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
+++.++++++|||++++.+++.+..|+..+......+.|+++++||+|+...+.........++..++++++++||++|.
T Consensus 81 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~ 160 (216)
T PLN03110 81 YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT 160 (216)
T ss_pred HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999999988766789999999999998777778888889999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 029103 159 NVNELFYEIAKRLAEV 174 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~ 174 (199)
|++++|++|+..+.+.
T Consensus 161 ~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 161 NVEKAFQTILLEIYHI 176 (216)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988663
No 13
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.3e-35 Score=210.10 Aligned_cols=185 Identities=36% Similarity=0.597 Sum_probs=159.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++.++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999998887767788888777777888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++++++.+..|+..+........|+++++||.|+.+...+....+..++...+++++++|+++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998777777788888888889999999999999999999999999
Q ss_pred HHhhCCCCCCCCccccccCCCCCCCCCC
Q 029103 171 LAEVNPSRQTGMKLHTESHGGGRRGFCC 198 (199)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~cc 198 (199)
+.++........ .+.+....+..||
T Consensus 161 ~~~~~~~~~~~~---~~~~~~~~~~~~~ 185 (188)
T cd04125 161 IIKRLEEQELSP---KNIKQQFKKKNNC 185 (188)
T ss_pred HHHHhhcCcCCc---cccccccccccCc
Confidence 987654443333 3444444455677
No 14
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.3e-35 Score=210.50 Aligned_cols=188 Identities=38% Similarity=0.669 Sum_probs=158.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+||+++|++|||||||++++.++.+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988775 34566777777777778888889999999999999998889999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
||++++++++.+..|+..+......+.|+++++||+|+...+.+...+...+...++++|+++|+++|+|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999766667777888888889999999999999999999999999
Q ss_pred HHHhhCCCCCCCC--ccccccCCCCCCCCCC
Q 029103 170 RLAEVNPSRQTGM--KLHTESHGGGRRGFCC 198 (199)
Q Consensus 170 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~cc 198 (199)
.+........+.. +.+.-...+++..+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCcEEeccccCcccccCCCC
Confidence 9988754433332 2333334555555787
No 15
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-36 Score=206.74 Aligned_cols=169 Identities=41% Similarity=0.732 Sum_probs=163.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
.-+|.+||+++|.+|||||=|+-++..+.|.....++++++.....+.+++..++.++|||+|+++|+.+...|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
.++|||++...+|+.+.+|+.+++.+..+++++++|+||+||.+.+.++.++++.++...++.++++||.++.+++++|.
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029103 166 EIAKRLAEV 174 (199)
Q Consensus 166 ~l~~~~~~~ 174 (199)
.++..+...
T Consensus 170 ~~l~~I~~~ 178 (222)
T KOG0087|consen 170 RVLTEIYKI 178 (222)
T ss_pred HHHHHHHHH
Confidence 998888765
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.8e-35 Score=211.29 Aligned_cols=185 Identities=31% Similarity=0.509 Sum_probs=152.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888776666665444 3445677888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998886643 36789999999999987777777788888888899999999999999999999999
Q ss_pred HHHHhhCCCCCCCCccccccCCCCCCCCCCC
Q 029103 169 KRLAEVNPSRQTGMKLHTESHGGGRRGFCCS 199 (199)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 199 (199)
+.+.++......+ ...+..+.++++ +|||
T Consensus 160 ~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQGP-KGGPTKKKEKKK-RKCV 188 (190)
T ss_pred HHHHHhhcccCCC-cCCCCCcccccc-cCce
Confidence 9887766554333 333344444444 5554
No 17
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.8e-35 Score=205.43 Aligned_cols=164 Identities=43% Similarity=0.773 Sum_probs=149.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|++|||||||++++..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999888777777777777777777888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
||++++++++.+..|+..+.....++.|+++|+||+|+.+.......++..+++..+++++++||++|.|+.++|.++.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776678999999999999887777888899999999999999999999999999999998
Q ss_pred HHHh
Q 029103 170 RLAE 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 18
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-34 Score=210.53 Aligned_cols=170 Identities=36% Similarity=0.699 Sum_probs=150.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
+.+||+|+|++|||||||+++|.++.+.....++.+.+.....+.. ++..+.+++||++|++.+..++..++.++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999998887777778877777777766 456789999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++++++.+..|+..+..... ...|+++|+||.|+.+...+...+...+++.++++|+++|+++|.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999876543 46788999999999887778888889999999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 029103 167 IAKRLAEVNPSR 178 (199)
Q Consensus 167 l~~~~~~~~~~~ 178 (199)
|.+.+.+..++.
T Consensus 161 l~~~~~~~~~~~ 172 (211)
T cd04111 161 LTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHhhcC
Confidence 999998775553
No 19
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.6e-35 Score=209.22 Aligned_cols=169 Identities=36% Similarity=0.583 Sum_probs=148.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 479999999999999999999998888766667666544 4566778888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
|||++++++++.+..|+..+.... ..+.|+++++||.|+.+...+...++..++..++++++++||++|.|+.++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999887654 4688999999999997766677777888888889999999999999999999999
Q ss_pred HHHHHhhCCCC
Q 029103 168 AKRLAEVNPSR 178 (199)
Q Consensus 168 ~~~~~~~~~~~ 178 (199)
++.+.+..+++
T Consensus 163 ~~~l~~~~~~~ 173 (189)
T PTZ00369 163 VREIRKYLKED 173 (189)
T ss_pred HHHHHHHhhcc
Confidence 99998765433
No 20
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.1e-34 Score=204.29 Aligned_cols=166 Identities=45% Similarity=0.758 Sum_probs=151.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
++.+||+++|++|+|||||++++.++.+...+.++.+.++....+...+..+.+++||++|++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35799999999999999999999999988888888888887777778888899999999999999988899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++++++.+..|+..+......+.|+++++||.|+.+..+....+...++..++++++++|+++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998777777778888888899999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998864
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.3e-35 Score=211.92 Aligned_cols=162 Identities=38% Similarity=0.605 Sum_probs=138.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+|+|.+|||||||++++..+.+.. ..++.+..+.... ...+.+.+||++|++.|..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988765 4555555443332 24678999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------------------cccCCHHHHHHHHHHhC-----
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVKNEEGELYAQENG----- 146 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 146 (199)
|++++++++.+..|+..+......+.|+++|+||+|+.+ .+.+...++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998888887766567899999999999965 56778889999998876
Q ss_pred ---------CcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 147 ---------LSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 147 ---------~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
++|+++||++|.||+++|..+++.+.....+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~ 195 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILA 195 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999888765433
No 22
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-35 Score=193.74 Aligned_cols=168 Identities=34% Similarity=0.634 Sum_probs=161.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
++-.|++|+|+..+|||||+.++.+..+.....++.+++...+++-.....+++++|||.|++.|..+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 56789999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
++||+++.+|+..++.|.-.+..++..+.|+++++||+|+.+++.++.+.+..+++++|..||++|++.+.+++.+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
...+-+.+
T Consensus 179 v~~Ic~km 186 (193)
T KOG0093|consen 179 VDIICDKM 186 (193)
T ss_pred HHHHHHHh
Confidence 99887754
No 23
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.5e-34 Score=205.55 Aligned_cols=164 Identities=29% Similarity=0.530 Sum_probs=145.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
++..+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45689999999999999999999999998887888876555 45667788899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEe
Q 029103 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 152 (199)
|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+...++..+++.+++ +|+++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 79999988764 6799999999999864 245888999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 029103 153 SAKSAHN-VNELFYEIAKRLA 172 (199)
Q Consensus 153 s~~~~~~-v~~~~~~l~~~~~ 172 (199)
||++|+| ++++|+.+++.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988643
No 24
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.8e-36 Score=196.39 Aligned_cols=166 Identities=38% Similarity=0.672 Sum_probs=157.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
.-++.+|+|.+|+|||||+-++..+.|...+..+++.+...++..+++..+++++||++|++.|..+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|||+++.+||..+.+|+.++.+.+ +..|-++|+||.|.++.+.+...++..++...++.+|++|++.+++++..|.-|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 999999999999999999998884 5788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC
Q 029103 169 KRLAEVN 175 (199)
Q Consensus 169 ~~~~~~~ 175 (199)
+++.+..
T Consensus 166 ~qvl~~k 172 (198)
T KOG0079|consen 166 KQVLQAK 172 (198)
T ss_pred HHHHHHH
Confidence 8887654
No 25
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.6e-34 Score=209.96 Aligned_cols=164 Identities=37% Similarity=0.570 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888888888888888877777754 578999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
||++++++++.+..|+..+..... .++|+++|+||.|+.+.+.+...+...++..++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887642 45789999999999877778888889999999999999999999999999999
Q ss_pred HHHHHHhh
Q 029103 167 IAKRLAEV 174 (199)
Q Consensus 167 l~~~~~~~ 174 (199)
|...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998764
No 26
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=197.13 Aligned_cols=192 Identities=34% Similarity=0.641 Sum_probs=167.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
.|.++.+++|.+-+|||||++.+..+++.+...++.+++.+.+.+.. ++..+++++|||+|+++|.++..+|+++.=++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 47899999999999999999999999999999999999988777666 56789999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCC-ceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG-NPN-LIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++|||+++.++|+.+..|+.+..-.. .|. +-+++|++|+|+.+.++++.++++.++..+++.|+++|+++|.||++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 99999999999999999999865443 244 4457889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC-------------CCCCCccccccCCCCCCCCCCC
Q 029103 165 YEIAKRLAEVNPS-------------RQTGMKLHTESHGGGRRGFCCS 199 (199)
Q Consensus 165 ~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~cc~ 199 (199)
+.|.+.+.....+ .-+..+.+.+..-.+.+..|||
T Consensus 166 ~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 9999998776543 2233444455666667778888
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.7e-34 Score=203.02 Aligned_cols=166 Identities=31% Similarity=0.548 Sum_probs=147.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..++..+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999888777777776444 44566788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.++..++..+++.++++|+++||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998888877653 46899999999999987777888889999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 029103 169 KRLAEVNP 176 (199)
Q Consensus 169 ~~~~~~~~ 176 (199)
+.+.+...
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 98887543
No 28
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.6e-34 Score=201.13 Aligned_cols=160 Identities=38% Similarity=0.696 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
++|+++|++|+|||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||++|.+.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999888878888888887788888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++++++.+..|+..+......+.|+++|+||.|+.+.+.+...++..+++..+++|+++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999887766689999999999998877788889999999999999999999999999999999865
No 29
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.4e-34 Score=201.32 Aligned_cols=163 Identities=36% Similarity=0.656 Sum_probs=146.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999887777888877777777777778899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++++++.+..|+..+........|+++++||+|+.+...........++...+++++++||++|.|+.++|++|...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766789999999999998776667777888888889999999999999999999999987
Q ss_pred HHh
Q 029103 171 LAE 173 (199)
Q Consensus 171 ~~~ 173 (199)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 654
No 30
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.7e-34 Score=208.64 Aligned_cols=164 Identities=26% Similarity=0.475 Sum_probs=146.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..+||+++|.+|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 5889999999999999999999999888888888876654 456778889999999999999999999999999999999
Q ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEecc
Q 029103 89 VYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSA 154 (199)
Q Consensus 89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~ 154 (199)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+ .+.+...++..+++.+++ .|+++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 9999999999984 79999998764 5789999999999864 256788899999999998 6999999
Q ss_pred CCCC-CHHHHHHHHHHHHHhh
Q 029103 155 KSAH-NVNELFYEIAKRLAEV 174 (199)
Q Consensus 155 ~~~~-~v~~~~~~l~~~~~~~ 174 (199)
++|+ |++++|..++..+.+.
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999988765
No 31
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.3e-34 Score=202.66 Aligned_cols=160 Identities=33% Similarity=0.596 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|+|||||+.++..+.+...+.++.+..+ ......++..+++.+|||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999887888887655 445667888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccc----------cCCHHHHHHHHHHhCC-cEEEeccCCCC
Q 029103 91 DITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKR----------KVKNEEGELYAQENGL-SFLETSAKSAH 158 (199)
Q Consensus 91 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (199)
|++++++++.+ ..|+..+.... ++.|+++|+||.|+.+.. .+...++..+++.+++ .|+++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987764 579999999999996542 4778889999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKRLA 172 (199)
Q Consensus 159 ~v~~~~~~l~~~~~ 172 (199)
|++++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.8e-34 Score=201.22 Aligned_cols=164 Identities=44% Similarity=0.762 Sum_probs=149.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|++|||||||++++.++.+...+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999998888777778888777777788888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
||+++++++..+..|+..+......+.|+++++||.|+.+...+...++..++..++++++++|+++|+|++++|.+|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776578999999999999877777788889999999999999999999999999999998
Q ss_pred HHHh
Q 029103 170 RLAE 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+..
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 8753
No 33
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=194.98 Aligned_cols=169 Identities=43% Similarity=0.744 Sum_probs=159.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
+.+.+||+++|.--||||||+-+++.++|.....++....+..+..++.+....+.+|||+|+++|..+-+-|++.+|++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45799999999999999999999999999988888887778888888888899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++|.+||+.++.|..+++......+-++||+||+|+.++++++..++..++..-|..|+++||+++.|+.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.....+..
T Consensus 170 Lt~~MiE~~ 178 (218)
T KOG0088|consen 170 LTAKMIEHS 178 (218)
T ss_pred HHHHHHHHh
Confidence 888876654
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.5e-34 Score=203.41 Aligned_cols=167 Identities=31% Similarity=0.571 Sum_probs=148.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC----------CeEEEEEEEeCCCccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN----------EVTIKFDIWDTAGQERYHSLAP 77 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~l~d~~g~~~~~~~~~ 77 (199)
++.+||+++|++|||||||++++..+.+.+.+.++.+.++....+... +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 367999999999999999999999998888888888877766655553 3568899999999999999999
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
.+++++|++++|||+++++++..+..|+..+.... .++.|+++|+||+|+.+...+...+...++...+++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 99999999999999999999999999999987754 46789999999999987777788888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029103 157 AHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~~ 174 (199)
|.|++++|++|.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 35
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.9e-33 Score=202.37 Aligned_cols=166 Identities=43% Similarity=0.688 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+||+|+|.+|||||||++++.++.+.. .+.++.+..+....+..++..+.+.+||++|.+.+..++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5677777777777788888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc----ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
||++++.+++.+..|+..+... ..+.|+++|+||.|+.+. ..+...+...++...+++++++|+++++|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999988765 457899999999998532 34445667778888889999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 029103 166 EIAKRLAEVNPS 177 (199)
Q Consensus 166 ~l~~~~~~~~~~ 177 (199)
+|.+.+.+....
T Consensus 160 ~i~~~~~~~~~~ 171 (193)
T cd04118 160 KVAEDFVSRANN 171 (193)
T ss_pred HHHHHHHHhccc
Confidence 999999876544
No 36
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=8.2e-34 Score=203.75 Aligned_cols=162 Identities=28% Similarity=0.498 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|..|||||||+.++..+.+.+.+.++.+..+. ....+++..+.+.+|||+|++.|..+++.+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999888778888775543 4456788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhC-CcEEEeccC
Q 029103 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAK 155 (199)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~ 155 (199)
||++++++++.+. .|+..+... .++.|+++|+||.|+.+.. .+...++..+++.++ ++|+++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999996 688877765 4689999999999996532 356678888999888 589999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 029103 156 SAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 156 ~~~~v~~~~~~l~~~~~~ 173 (199)
+|+|++++|++|++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998865
No 37
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.7e-34 Score=201.77 Aligned_cols=161 Identities=29% Similarity=0.520 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999988877778776555 35667788899999999999999999999999999999999
Q ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEeccC
Q 029103 90 YDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAK 155 (199)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (199)
||++++++++.+ ..|+..+.... ++.|+++|+||.|+.+ .+.+...++..+++.+++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 79999988764 6899999999999854 235788899999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 029103 156 SAHN-VNELFYEIAKRLA 172 (199)
Q Consensus 156 ~~~~-v~~~~~~l~~~~~ 172 (199)
+|++ ++++|..+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 38
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1e-33 Score=198.20 Aligned_cols=161 Identities=39% Similarity=0.743 Sum_probs=152.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|++|||||||+++|.++.+.+.+.++.+.+........++..+.+.+||++|++.|..+...++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888888899999999999999999999999999999888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
++++++++.+..|++.+........|+++++||.|+.+.+.++..++..+++.++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988776899999999999998889999999999999999999999999999999999999887
Q ss_pred H
Q 029103 172 A 172 (199)
Q Consensus 172 ~ 172 (199)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=8.9e-34 Score=199.40 Aligned_cols=162 Identities=29% Similarity=0.648 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+++|.++.+...+.++.+.++.......++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGN-----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.......+...++...+++++++|+++|+|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999887653 5799999999999976566677777888888889999999999999999999
Q ss_pred HHHHHHH
Q 029103 166 EIAKRLA 172 (199)
Q Consensus 166 ~l~~~~~ 172 (199)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2e-33 Score=197.32 Aligned_cols=163 Identities=44% Similarity=0.773 Sum_probs=148.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
+.+||+++|.+|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+..++..++..++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999888877777888888888888888888899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|||++++.+++.+..|+..+......+.|+++|+||.|+.+..+....+...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887666799999999999987777777788888888899999999999999999999998
Q ss_pred HHH
Q 029103 169 KRL 171 (199)
Q Consensus 169 ~~~ 171 (199)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 41
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.6e-33 Score=197.45 Aligned_cols=166 Identities=43% Similarity=0.779 Sum_probs=150.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.+||+++|.+|||||||++++.++.+.....++.+.+.....+...+....+.+||++|++.+..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999998887777778888887888888888889999999999999998899999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+.....++.|+++++||.|+.+.......+...++...++.++++|++++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988767889999999999998766777788888888899999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988764
No 42
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=7.5e-33 Score=201.79 Aligned_cols=170 Identities=39% Similarity=0.660 Sum_probs=145.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
...+..+||+|+|.+|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 34456899999999999999999999987764 45677777777777778888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 85 AAVVVYDITSMDSFERAKK-WVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
++++|||++++++++.+.. |...+.... ..+.|+++|+||.|+.........+...++..+++.|+++|++++.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999875 655555433 35678999999999987667777788888888999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 029103 163 LFYEIAKRLAEVN 175 (199)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (199)
+|++|.+.+....
T Consensus 168 l~~~l~~~~~~~~ 180 (211)
T PLN03118 168 CFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999997754
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.5e-33 Score=199.58 Aligned_cols=164 Identities=26% Similarity=0.483 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-----ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-----RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++.+++.+..|+..+........| ++|+||+|+... ......+...+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555677 678999998521 11123456778888899999999999999999999
Q ss_pred HHHHHHHhhC
Q 029103 166 EIAKRLAEVN 175 (199)
Q Consensus 166 ~l~~~~~~~~ 175 (199)
+|.+.+.+..
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999887643
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2e-33 Score=196.85 Aligned_cols=161 Identities=35% Similarity=0.594 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999998887766666654 34455667788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.......+...+++.++.+++++||++|.|+.++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887754 46899999999999977666667777788888889999999999999999999998
Q ss_pred HHH
Q 029103 169 KRL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 45
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.8e-33 Score=200.51 Aligned_cols=164 Identities=31% Similarity=0.533 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+||+|+|++|||||||+++|.++.+...+.++.+..+... +... +..+.+.+||++|++.+..++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999888777777666655443 4443 6778999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc----ccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHH
Q 029103 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK----RKVKNEEGELYAQENGL-SFLETSAKSAHNVNEL 163 (199)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 163 (199)
||++++++++.+. .|+..+... .++.|+++++||.|+... ..+...+...++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 588777654 467899999999998653 24567788888888888 8999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 029103 164 FYEIAKRLAEVNP 176 (199)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (199)
|+.+.+.+.....
T Consensus 159 f~~l~~~~~~~~~ 171 (187)
T cd04132 159 FDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999987553
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-33 Score=196.48 Aligned_cols=162 Identities=43% Similarity=0.744 Sum_probs=145.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
+.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 57899999999999999999999888877777788777777778888888899999999999999889999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~l 167 (199)
|||++++.+++.+..|+..+......+.|+++|+||+|+.+..+.....+..+++..+. .++++|+++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999877667899999999999987777777788888888775 68999999999999999999
Q ss_pred HHH
Q 029103 168 AKR 170 (199)
Q Consensus 168 ~~~ 170 (199)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 47
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=9.7e-33 Score=200.90 Aligned_cols=168 Identities=40% Similarity=0.748 Sum_probs=152.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998887777788888887778888888889999999999999989999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++++++.+..|+..+........|+++++||.|+.+...+...+...+++.++++++++|++++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666789999999999998877788888899999999999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
++.+.++.
T Consensus 164 ~~~~~~~~ 171 (210)
T PLN03108 164 AAKIYKKI 171 (210)
T ss_pred HHHHHHHh
Confidence 99987653
No 48
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.1e-33 Score=195.61 Aligned_cols=160 Identities=44% Similarity=0.757 Sum_probs=146.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+++|.++.+.....++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777788888888888888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++.++..+..|+..+.....++.|+++++||.|+.+...+...+...++...++.++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999887767889999999999998777778888899999999999999999999999999999875
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5.2e-33 Score=195.10 Aligned_cols=162 Identities=35% Similarity=0.620 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|.+|||||||++++..+.+...+.++.+..+ .......+..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998877666666665444 34566778888999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.......+...+++.++++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887653 47899999999999987666666777788888899999999999999999999999
Q ss_pred HHHH
Q 029103 169 KRLA 172 (199)
Q Consensus 169 ~~~~ 172 (199)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.8e-33 Score=202.73 Aligned_cols=165 Identities=34% Similarity=0.540 Sum_probs=146.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56899999999999999999999999888888888888888877777788899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+... ..+.|+++|+||.|+.+. .+..... .++...++.|+++||++|.|+.++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999999999999876 467999999999998643 3334444 6777788999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99997653
No 51
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=9.6e-33 Score=193.52 Aligned_cols=163 Identities=48% Similarity=0.857 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|+|||||++++.+..+.....++.+.++....+...+....+.+||+||++.+...+..++..+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777788888887788888888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++.+++.+..|+..+.....+++|+++++||.|+....+.....+..+...++++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888766789999999999988766677777888888899999999999999999999999998
Q ss_pred HHh
Q 029103 171 LAE 173 (199)
Q Consensus 171 ~~~ 173 (199)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 865
No 52
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=5.5e-33 Score=194.49 Aligned_cols=159 Identities=35% Similarity=0.649 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC--CeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
+||+++|.+|+|||||++++.++.+.+.+.++.+.++......+. +..+.+.+||+||++.+..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988887778888888776666666 778899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|||++++++++.+..|+..+... ..+.|+++++||.|+.....+...++..+++..+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988765 46899999999999987777777888889999999999999999999999999987
Q ss_pred HH
Q 029103 169 KR 170 (199)
Q Consensus 169 ~~ 170 (199)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 53
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.3e-32 Score=194.16 Aligned_cols=162 Identities=33% Similarity=0.626 Sum_probs=143.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|.+|||||||++++.++.+...+.++.+.++.......++..+.+.+||+||++.|..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888887888888888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccc--CCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRK--VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
++++++++.+..|+..+.... ....|+++|+||.|+.+..+ ....++..++..++.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 34578999999999865433 235566777788889999999999999999999999
Q ss_pred HHHHh
Q 029103 169 KRLAE 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 99876
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.7e-32 Score=192.89 Aligned_cols=160 Identities=36% Similarity=0.615 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||++++..+.+...+.++.+.+........+...+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777888888877777777888899999999999999988899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++++++.+..|+..+..... +.|+++++||+|+.+. ... .....++...+++++++||++|+|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987754 8999999999999743 332 33456677778899999999999999999999998
Q ss_pred HHh
Q 029103 171 LAE 173 (199)
Q Consensus 171 ~~~ 173 (199)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.1e-32 Score=195.20 Aligned_cols=159 Identities=28% Similarity=0.492 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||++++..+.+...+.++.+..+. ..+...+..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999998887777787765554 34567788899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLETSAKS 156 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 156 (199)
|++++++++.+. .|+..+... .++.|+++|+||.|+.+. +.+...++..+++..+ +.|+++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 588888765 357999999999998543 4566777888888877 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029103 157 AHNVNELFYEIAKRL 171 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~ 171 (199)
|+|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 56
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.3e-32 Score=199.25 Aligned_cols=164 Identities=26% Similarity=0.489 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+|+|.+|||||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++.+|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999888888888876654 4567788899999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccC
Q 029103 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK 155 (199)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (199)
||++++++++.+. .|...+... .++.|+++|+||+|+.+. ..+...++..++++.++ +|+++||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999984 677666544 578999999999998542 13667789999999995 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHhhC
Q 029103 156 SAHN-VNELFYEIAKRLAEVN 175 (199)
Q Consensus 156 ~~~~-v~~~~~~l~~~~~~~~ 175 (199)
++++ |+++|...+.....+.
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhcc
Confidence 9885 9999999999876643
No 57
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=185.42 Aligned_cols=169 Identities=42% Similarity=0.719 Sum_probs=160.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+-+||+++|+.|+|||.|++++..+.|++....+++++.+.++..+++..+++++|||+|+++|.++..+|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|||++-..+|+-+.+|+.++.++.+....-++|+||+|+.+.++++...+++|.......|+++||+..++++.+|..
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 99999999899999999999999998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
+...+....
T Consensus 164 ~a~rli~~a 172 (213)
T KOG0095|consen 164 LACRLISEA 172 (213)
T ss_pred HHHHHHHHH
Confidence 988776544
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.4e-32 Score=192.70 Aligned_cols=161 Identities=36% Similarity=0.613 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|.+|||||||++++..+.+.+.+.++.+ +.......+++..+.+.+||++|.+++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999888776666554 44556677788888999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.+...+...+...++...+++++++||+++.|+.++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887754 36899999999999976666666677888888889999999999999999999998
Q ss_pred HHH
Q 029103 169 KRL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.5e-32 Score=191.11 Aligned_cols=160 Identities=33% Similarity=0.551 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||++++..+.+.+...++.+.+........++..+.+.+||++|++.|..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887776777766776777777888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++.+++.+..|+..+... .++.|+++++||.|+... ...+...++...+++++++|+++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999998765 457899999999998532 1334456666778999999999999999999999998
Q ss_pred HHhh
Q 029103 171 LAEV 174 (199)
Q Consensus 171 ~~~~ 174 (199)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8764
No 60
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-33 Score=185.56 Aligned_cols=170 Identities=41% Similarity=0.695 Sum_probs=160.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
+..++-+|++++|+.|.|||.|++++..+++.+....++++++..+.+++.+..+++++|||+|+++|.+..++|++.+-
T Consensus 4 EtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA 83 (214)
T KOG0086|consen 4 ETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 83 (214)
T ss_pred hhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 34567899999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
+.++|||+++.++|+.+..|+...+....+++-+++++||.|+.++++++..++..|+++..+.+.++|+++|++++|.|
T Consensus 84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 84 GALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 163 (214)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 029103 165 YEIAKRLAEV 174 (199)
Q Consensus 165 ~~l~~~~~~~ 174 (199)
-.....+..+
T Consensus 164 l~c~~tIl~k 173 (214)
T KOG0086|consen 164 LKCARTILNK 173 (214)
T ss_pred HHHHHHHHHH
Confidence 8766666544
No 61
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.5e-32 Score=195.10 Aligned_cols=163 Identities=36% Similarity=0.566 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
.||+++|++|||||||++++.++.+...+.++.+..+. ..+..++..+.+.+||++|++.|..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999998887777777665543 44556777889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhC-CcEEEeccCC
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENG-LSFLETSAKS 156 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 156 (199)
|++++++++.+. .|+..+... .++.|+++|+||+|+.+.. .+...++..++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999885 688888765 4589999999999986543 244556677777766 7899999999
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q 029103 157 AHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~~~ 175 (199)
|.|++++|.+|.+.+....
T Consensus 159 ~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 159 NRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999887533
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.4e-32 Score=191.01 Aligned_cols=160 Identities=46% Similarity=0.779 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+++.+||+||++.+...+..++..+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998887777888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++++++.+..|+..+......+.|+++++||+|+.+.......+...++...+++++++|+++++|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877655689999999999997666677777888888889999999999999999999999875
No 63
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.3e-32 Score=190.12 Aligned_cols=162 Identities=70% Similarity=1.055 Sum_probs=147.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|++|||||||+++|.++.+.....++.+..+......+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999888776777777777778888889899999999999999988888899999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
+|++++++++....|+..+.....+..|+++++||+|+.+.......+...+...+++.++++|+++|.|+.++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998876688999999999999866666777888888888999999999999999999999998
Q ss_pred HH
Q 029103 170 RL 171 (199)
Q Consensus 170 ~~ 171 (199)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.7e-32 Score=191.69 Aligned_cols=159 Identities=36% Similarity=0.506 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||++++.++.+...+.++.+..+ ......+...+.+.+||++|++.+..++..++..+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999888766666665444 444556777889999999999999988888999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
|++++++++.+..|+..+.... .++.|+++|+||.|+...+.+...++..++..+++.++++||++|+|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999888776643 2679999999999997766677777788888889999999999999999999999
Q ss_pred HHH
Q 029103 168 AKR 170 (199)
Q Consensus 168 ~~~ 170 (199)
+++
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 754
No 65
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5e-32 Score=191.17 Aligned_cols=162 Identities=35% Similarity=0.626 Sum_probs=142.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+||+++|++|||||||++++.++.+.+...++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45799999999999999999999988887777777777777777778889999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNE 162 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~ 162 (199)
+|||++++++++.+..|+..+.... ..+.|+++++||.|+. .......+...++..++ .+++++||++|+|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999998876643 2578999999999986 44566778888888887 4799999999999999
Q ss_pred HHHHHHHH
Q 029103 163 LFYEIAKR 170 (199)
Q Consensus 163 ~~~~l~~~ 170 (199)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999865
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3e-32 Score=191.14 Aligned_cols=162 Identities=38% Similarity=0.622 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||++++.++.+...+.++.. +.......+++..+.+.+||+||++++..++..++..+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999998887665555554 333455667788899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
|++++++++.+..|+..+.+.. ..+.|+++++||+|+.+...........++...+.+++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988876653 357899999999999876666777788888888999999999999999999999998
Q ss_pred HHHh
Q 029103 170 RLAE 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+..
T Consensus 160 ~~~~ 163 (164)
T smart00173 160 EIRK 163 (164)
T ss_pred HHhh
Confidence 7653
No 67
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.7e-32 Score=191.91 Aligned_cols=159 Identities=28% Similarity=0.518 Sum_probs=137.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|.+|||||||+.++..+.+...+.++.. ..+......++..+.+.+|||+|++.|..+++.++.++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999888777777764 34444556788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccC
Q 029103 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAK 155 (199)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 155 (199)
||++++++++.+. .|+..+... .++.|+++|+||.|+.+. ..+...++..++..++. +++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999985 688887765 468999999999998542 24677888889998884 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029103 156 SAHNVNELFYEIAKR 170 (199)
Q Consensus 156 ~~~~v~~~~~~l~~~ 170 (199)
+|+|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=6.7e-32 Score=190.56 Aligned_cols=162 Identities=36% Similarity=0.666 Sum_probs=145.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCCEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAAVV 88 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~~~~~~~~~d~~i~ 88 (199)
.++|+++|++|||||||++++..+.+.....++.+.++.......++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999988877777888888888888888888999999999998886 578888999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC---CCCHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS---AHNVNELF 164 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~ 164 (199)
|||++++.+++.+..|+..+.... ..+.|+++++||.|+....++.......++..++++|+++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887754 46799999999999988777888888889999999999999999 88999999
Q ss_pred HHHHHHH
Q 029103 165 YEIAKRL 171 (199)
Q Consensus 165 ~~l~~~~ 171 (199)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 69
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=8.9e-32 Score=188.66 Aligned_cols=161 Identities=33% Similarity=0.546 Sum_probs=138.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|++|+|||||++++.++.+...+.++.... ......+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 5899999999999999999999887766555555433 344455777788999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.........+...++...+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 46789999999999987666667778888888889999999999999999999998
Q ss_pred HHH
Q 029103 169 KRL 171 (199)
Q Consensus 169 ~~~ 171 (199)
..+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.1e-32 Score=188.34 Aligned_cols=160 Identities=33% Similarity=0.584 Sum_probs=137.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|++|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999887766666655433 45566777788899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||+++..+++.+..|+..+.... ..+.|+++++||+|+.+ ......+...++...+++++++||++|.|++++|++|.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999988988887654 46889999999999876 34456677778888899999999999999999999998
Q ss_pred HHH
Q 029103 169 KRL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=7.2e-32 Score=194.34 Aligned_cols=167 Identities=26% Similarity=0.307 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccccccC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYRG 82 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~~~~ 82 (199)
+||+|+|.+|||||||++++.++.+...+.++.+.+.....+..++..+.+.+|||||.+.+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999998887777777766666666777888899999999997654321 2234789
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCCC
Q 029103 83 AAAAVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAH 158 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 158 (199)
+|++|+|||++++++++.+..|+..+.+.. ..++|+++|+||.|+...+.....+...++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887653 4779999999999997665566666666644 568999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCC
Q 029103 159 NVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~~~~ 177 (199)
|++++|+.+++.+..+-+.
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999888865444
No 72
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.4e-31 Score=185.98 Aligned_cols=161 Identities=48% Similarity=0.832 Sum_probs=142.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|+|||||++++.++.+.....++.............+....+.+||+||++.+..+++.++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988876655666656666666777777889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|++++++++.+..|+..+......+.|+++++||.|+....+....+...+....+.+++++|+++++|+.++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888766689999999999998767777777888888889999999999999999999999876
Q ss_pred H
Q 029103 171 L 171 (199)
Q Consensus 171 ~ 171 (199)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.8e-31 Score=187.23 Aligned_cols=160 Identities=29% Similarity=0.526 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
+||+++|++|||||||++++..+ .+...+.++.+.++........ +..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5666677777777766666664 56789999999999999888999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+..++.......+....+++++++|++++.|+.++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887763 678999999999997766667767777777888999999999999999999999
Q ss_pred HHHH
Q 029103 168 AKRL 171 (199)
Q Consensus 168 ~~~~ 171 (199)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8875
No 74
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=5.8e-31 Score=185.92 Aligned_cols=165 Identities=42% Similarity=0.735 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||++++.+..+.....++.+.++........+..+.+.+||+||++.+...+..+++.+|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988877767777777777777778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++.+++.+..|...+..... .+.|+++++||+|+.............+....+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888887655432 379999999999998655556677777777777 7899999999999999999
Q ss_pred HHHHHHHhhC
Q 029103 166 EIAKRLAEVN 175 (199)
Q Consensus 166 ~l~~~~~~~~ 175 (199)
+|.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999988753
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.9e-31 Score=191.03 Aligned_cols=156 Identities=33% Similarity=0.585 Sum_probs=138.9
Q ss_pred EcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH
Q 029103 16 LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM 95 (199)
Q Consensus 16 ~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (199)
+|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888777888888888888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 96 DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.+++.+..|+..+.... .+.|+++|+||.|+... .+.... ..++...++.|+++||++|.|+.++|++|++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998763 68999999999998643 333333 467778899999999999999999999999998764
No 76
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.9e-31 Score=187.23 Aligned_cols=159 Identities=32% Similarity=0.558 Sum_probs=136.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (199)
|+|+|++|||||||++++.++.+...+.++.... +......++..+.+.+||++|++.|..++..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999988877666665443 344566778888999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhCC-cEEEeccCCCC
Q 029103 93 TSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETSAKSAH 158 (199)
Q Consensus 93 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (199)
+++++++.+. .|+..+... .++.|+++++||.|+.+.. .+...++..+++..+. .++++|+++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 688888765 4689999999999986522 3667778889998886 89999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 029103 159 NVNELFYEIAKRLAE 173 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~ 173 (199)
|++++|+.|++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 77
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-30 Score=183.95 Aligned_cols=164 Identities=42% Similarity=0.741 Sum_probs=145.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.++|+++|++|+|||||++++.++.+.+...++.+.+.....+...+..+.+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999988777666777777777777888888889999999999999988889999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++++||.|+.+..++.......+......+++++|+++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999998887766789999999999998777777777777887778899999999999999999999
Q ss_pred HHHH
Q 029103 168 AKRL 171 (199)
Q Consensus 168 ~~~~ 171 (199)
.+.+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=8.2e-31 Score=183.32 Aligned_cols=159 Identities=41% Similarity=0.753 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988877667788887777777777888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
|++++.+++.+..|+..+.... ..+.|+++++||+|+.. ......+...++...+++++++|+++|.|+.++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999988765 47899999999999974 344567788888889999999999999999999999887
Q ss_pred H
Q 029103 170 R 170 (199)
Q Consensus 170 ~ 170 (199)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8.8e-31 Score=184.49 Aligned_cols=162 Identities=31% Similarity=0.568 Sum_probs=140.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|.+|||||||++++.++.+...+.++.+.. .......++..+.+.+||+||+++|..+++.++..++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999888776666666543 356666778889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~~l 167 (199)
||++++++++.+..|...+.... ..+.|+++++||.|+.+.......+...+++.++ ++++++||+++.|++++|++|
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999998887643 4689999999999998777777777777888877 789999999999999999999
Q ss_pred HHHHH
Q 029103 168 AKRLA 172 (199)
Q Consensus 168 ~~~~~ 172 (199)
...+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 87654
No 80
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=5.7e-31 Score=183.06 Aligned_cols=158 Identities=52% Similarity=0.889 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||++++.++.+.....++.+.++.............+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998888877888888888888888888899999999999999889999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|++++++++.+..|+..+........|+++++||.|+....+....+...+...++.+++++|++++.|+.++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887667899999999999975566677888888888899999999999999999999886
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.9e-31 Score=185.15 Aligned_cols=163 Identities=21% Similarity=0.250 Sum_probs=139.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
..+||+++|.+|||||||++++.++.+. ..+.++.+..+....+.+++..+.+.+||++|.+.+..++..++..+|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4789999999999999999999998887 777788877777677777888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.+++.+..|+..+.. ..++|+++|+||.|+.+.......+...+++.+++ .++++||++++|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 99999999999998888876633 24789999999999965544433445677777777 4799999999999999999
Q ss_pred HHHHHHh
Q 029103 167 IAKRLAE 173 (199)
Q Consensus 167 l~~~~~~ 173 (199)
|.+.+..
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9998763
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=8.8e-31 Score=194.23 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||+++++++.+...+.++.+ +.......+++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998888776666665 455566777888899999999999998888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh---------CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCH
Q 029103 91 DITSMDSFERAKKWVQELQRQ---------GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV 160 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v 160 (199)
|++++++++.+..|+..+... ...+.|+++|+||+|+.+...+...+...+... .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 235799999999999976556666666666553 4678999999999999
Q ss_pred HHHHHHHHHHHH
Q 029103 161 NELFYEIAKRLA 172 (199)
Q Consensus 161 ~~~~~~l~~~~~ 172 (199)
+++|++|.+.+.
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.2e-30 Score=187.39 Aligned_cols=158 Identities=25% Similarity=0.417 Sum_probs=127.8
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHHhCC-----CCCCCcCccce-eEEEEE--------EEeCCeEEEEEEEeCCCcccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVL-RFVKGQ-----FFDFQESTIGA-AFFTQV--------LSLNEVTIKFDIWDTAGQERYHS 74 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~v~l~d~~g~~~~~~ 74 (199)
.+||+++|.+|||||||+. ++.++. +...+.++.+. +.+... ..+++..+.+.+|||+|++.+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 555433 23444555542 222221 246788899999999998753
Q ss_pred cccccccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc-------------------cccCC
Q 029103 75 LAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE-------------------KRKVK 134 (199)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 134 (199)
....+++++|++|+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999996 6988887663 5789999999999864 36778
Q ss_pred HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 135 NEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
..++..+++.++++|+++||++|.|++++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 889999999999999999999999999999998864
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=7.9e-31 Score=184.19 Aligned_cols=160 Identities=31% Similarity=0.490 Sum_probs=134.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-cccccccccCCCEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-~~~~~~~~~~~d~~i~v~ 90 (199)
||+++|++|||||||+++++.+.+...+.++....+ .....+++..+.+.+||+||++.+ ...+..++..+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998777655555553333 455667888889999999998853 445677889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC-CCHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA-HNVNELFYEI 167 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~v~~~~~~l 167 (199)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++...+++|+++|++++ .|++++|+.|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887754 457999999999999777777778888888888999999999999 5999999999
Q ss_pred HHHHH
Q 029103 168 AKRLA 172 (199)
Q Consensus 168 ~~~~~ 172 (199)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=2.1e-30 Score=183.44 Aligned_cols=157 Identities=26% Similarity=0.502 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|+|||||++++.++.+...+.++. .+.......+++..+.+.+||+||++.+..++..++.++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877666654 4455556777888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENGL-SFLETSAKS 156 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
|++++++++.+. .|+..+... .++.|+++++||.|+.. .+.+...++..+++..+. .|+++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 688887754 45789999999999863 345677788889998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 029103 157 AHNVNELFYEIAK 169 (199)
Q Consensus 157 ~~~v~~~~~~l~~ 169 (199)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.4e-30 Score=181.46 Aligned_cols=153 Identities=21% Similarity=0.396 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+.++..+.+.+.+.+. ... +...+.+++..+.+.+||++|.+. ..++..+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGR-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccc-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988776654443 222 345677788888999999999864 34678899999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--ccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|++++++++.+..|+..+..... .+.|+++++||.|+. ..+.+...++..+++.. ++.|+++||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987753 678999999999985 35677778888888776 589999999999999999999
Q ss_pred HHHH
Q 029103 167 IAKR 170 (199)
Q Consensus 167 l~~~ 170 (199)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=1.9e-30 Score=190.07 Aligned_cols=163 Identities=30% Similarity=0.390 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccccc-CCCEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR-GAAAAVV 88 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~-~~d~~i~ 88 (199)
+||+++|++|||||||++++..+.+. ..+.++.+.+.....+.+++....+.+||++|.+. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 55566665566677777888889999999999882 23344556 8999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++...+++|+++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887754 3689999999999998777777777888888889999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+....
T Consensus 159 ~~~~~~~~ 166 (221)
T cd04148 159 VRQIRLRR 166 (221)
T ss_pred HHHHHhhh
Confidence 99996543
No 88
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=3.2e-30 Score=182.56 Aligned_cols=159 Identities=28% Similarity=0.506 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|+|||||++++..+.+...+.++.. +.......+++..+.+.+||++|++.|...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888766665554 333445667888888999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS 156 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
|++++.+++.+. .|+..+... .++.|+++++||+|+.+. ..+...++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 687777665 678999999999998543 24566778888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029103 157 AHNVNELFYEIAKRL 171 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~ 171 (199)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 89
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.3e-33 Score=184.67 Aligned_cols=170 Identities=32% Similarity=0.556 Sum_probs=154.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC---------CeEEEEEEEeCCCcccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN---------EVTIKFDIWDTAGQERYHSLAPM 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~l~d~~g~~~~~~~~~~ 78 (199)
++-+|.+.+|.+||||||++.++..++|.....++.+++...+....+ +..+.+++|||+|+++|.++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 467789999999999999999999999999899999998877666552 34578999999999999999999
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
|++.+=+++++||+++..||-.++.|+.++.-+. +.++-+++++||.|+++.+.+.+.++..+++++++|||++||-+|
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999999988765 566778999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCC
Q 029103 158 HNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~~~~~ 177 (199)
.++++..+.|...++++..+
T Consensus 167 ~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887544
No 90
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-30 Score=168.75 Aligned_cols=167 Identities=42% Similarity=0.754 Sum_probs=158.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+-+|-+++|.-|+|||.|++.+...+|-.....++++++-.+.+.+.+..+++++||++|+++|....+++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 57889999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
.|||++.+.++..+..|+...++..+++..+++++||.|+.++++++.++++.|+.++|+.++++|+++|.++++.|-.-
T Consensus 89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhh
Q 029103 168 AKRLAEV 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
...+.+.
T Consensus 169 akkiyqn 175 (215)
T KOG0097|consen 169 AKKIYQN 175 (215)
T ss_pred HHHHHHh
Confidence 7777665
No 91
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.6e-29 Score=181.08 Aligned_cols=162 Identities=31% Similarity=0.540 Sum_probs=133.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+.||+|+|++|+|||||++++..+.+.+...++....+ .....+++..+.+.+||++|++.+....+.++..+|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 36899999999999999999998777665555443333 33455677778899999999998887777788999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcc----------cccCCHHHHHHHHHHhCC-cEEEeccCCC
Q 029103 90 YDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEE----------KRKVKNEEGELYAQENGL-SFLETSAKSA 157 (199)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (199)
||+++.++++.+. .|+..+... .++.|+++|+||.|+.+ ...+...+...+++..+. +|+++||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999986 688888765 35799999999999854 234455677888888885 7999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 029103 158 HNVNELFYEIAKRLAE 173 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~ 173 (199)
.|++++|+++.+.+..
T Consensus 159 ~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 159 EGVDDVFEAATRAALL 174 (187)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988866
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.1e-29 Score=177.96 Aligned_cols=162 Identities=33% Similarity=0.600 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||++++....+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 489999999999999999999888776666555433 3455667888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
|++++.+++.+..|+..+.... ..+.|+++++||+|+.+.......+...+...++++++++|++++.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999998888877653 368999999999999765555667777888888999999999999999999999998
Q ss_pred HHHh
Q 029103 170 RLAE 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 8754
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=3.2e-32 Score=176.02 Aligned_cols=162 Identities=40% Similarity=0.728 Sum_probs=151.7
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103 14 VLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (199)
Q Consensus 14 ~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (199)
+++|.+++|||.|+-++..+.|. ....++.++++....+..++..+++++|||+|+++|.+....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999998887765 45688999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
.+..||+..+.|+.++.++......+.+++||+|+..++.+...+.+.++..+++|+.++|+++|.+++-.|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888889999999999888999999999999999999999999999999999999999887
Q ss_pred hhC
Q 029103 173 EVN 175 (199)
Q Consensus 173 ~~~ 175 (199)
+..
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 653
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.1e-29 Score=177.11 Aligned_cols=158 Identities=37% Similarity=0.631 Sum_probs=137.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|++|||||||++++.+..+.....++.. ..........+..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998776665555555 4455556666677899999999999988888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
++++++++.+..|+..+..... ...|+++++||+|+..........+..+...++.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877654 689999999999998766777788888888888999999999999999999999875
No 95
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.6e-29 Score=182.50 Aligned_cols=163 Identities=26% Similarity=0.411 Sum_probs=132.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|.+|||||||++++.++.+...+.++.. ........+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999887765555543 3444556667777899999999999998888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc-cccCCHHHHHHHHH-HhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
++++.+++.+..|+..+..... .+.|+++++||.|+.. ...+.......... ..+.+++++|+++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877643 5799999999999865 34444434333332 4567899999999999999999999
Q ss_pred HHHHhhC
Q 029103 169 KRLAEVN 175 (199)
Q Consensus 169 ~~~~~~~ 175 (199)
+.+....
T Consensus 160 ~~~~~~~ 166 (198)
T cd04147 160 RQANLPY 166 (198)
T ss_pred HHhhccc
Confidence 9886443
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.9e-29 Score=177.47 Aligned_cols=164 Identities=34% Similarity=0.524 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
.||+++|++|+|||||++++.++.+...+.++..... .......+..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998877655555544333 445566777888999999999999888889999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
|.++..+++.+..|+..+.+.. ..+.|+++++||+|+...+.....+...+....+++++++|++++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999888877654 467899999999999766666666677777888899999999999999999999999
Q ss_pred HHHhhC
Q 029103 170 RLAEVN 175 (199)
Q Consensus 170 ~~~~~~ 175 (199)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 988754
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=9.4e-30 Score=181.59 Aligned_cols=165 Identities=24% Similarity=0.319 Sum_probs=128.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
+.++|+++|.+|||||||++++..+.+... .++.+.......... ++..+.+.+||++|++.+..+|..++..+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998776543 455555554444433 346788999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH------HhCCcEEEeccCCCCCH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAHNV 160 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v 160 (199)
+|+|++++.+++....|+..+.... ..+.|+++++||+|+.+. ....+...+.. ..+++++++||++|.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999999988888887776543 357999999999998642 22232333221 11346899999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 029103 161 NELFYEIAKRLAEVNP 176 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (199)
+++|++|.+.+.+.++
T Consensus 159 ~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 159 QEGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999976543
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.7e-29 Score=179.83 Aligned_cols=157 Identities=20% Similarity=0.352 Sum_probs=123.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+||+++|.+|||||||++++..+.+.. ..++.+.... . ++...+.+++||+||++.+..+|..++.++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999998776653 4555554432 2 2334578999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--------cEEEeccCCCC
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--------SFLETSAKSAH 158 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~ 158 (199)
+|||++++++++....++..+... ...+.|++|++||+|+.... ... ++....++ .++++||++|+
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAA---EITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHH---HHHHHhCccccCCCceEEEeccCCCCC
Confidence 999999999998887777766443 23678999999999987543 222 23333332 45689999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 029103 159 NVNELFYEIAKRLAEV 174 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~ 174 (199)
|+.++|+||.+.+..+
T Consensus 165 gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 165 GLYEGLDWLSNNIANK 180 (181)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999988764
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2.2e-30 Score=181.72 Aligned_cols=152 Identities=22% Similarity=0.317 Sum_probs=125.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (199)
|+++|++|||||||++++.++.+...+.++.+... ..++...+.+.+||++|++.+..++..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999998877766667666442 23455678899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH----HHHHHHHHHhCCcEEEeccCC------CCCHHH
Q 029103 93 TSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKS------AHNVNE 162 (199)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~v~~ 162 (199)
+++.++...+.|+..+.... ++.|+++++||.|+........ .....++++.++.++++||++ ++|+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 99999999888888876543 6899999999999876543322 223555666788899999998 999999
Q ss_pred HHHHHHH
Q 029103 163 LFYEIAK 169 (199)
Q Consensus 163 ~~~~l~~ 169 (199)
+|+.++.
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998864
No 100
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.1e-28 Score=174.74 Aligned_cols=159 Identities=35% Similarity=0.570 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
.||+++|++|||||||++++.++.+.+.+.++....+. ..+.+++..+.+.+||++|++.|...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999998887766666654443 45567788889999999999999988888899999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSAKS 156 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
|++++++++.+. .|+..+... ..+.|+++++||.|+.+. ..+...++..++...+. +++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 687777654 468899999999998542 22345566777777664 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029103 157 AHNVNELFYEIAKRL 171 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~ 171 (199)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.1e-29 Score=178.83 Aligned_cols=154 Identities=21% Similarity=0.371 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|++|||||||+++|..+.+.. +.++.+.++. ... ...+.+.+||++|++.+..++..++..+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 47899999999999999999998766543 4455555443 222 346789999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCCCHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~ 162 (199)
|||++++.+++....|+..+... ...+.|+++++||+|+.+. ....+...... ...+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999998888777666543 2467899999999998642 33444444332 1234689999999999999
Q ss_pred HHHHHHH
Q 029103 163 LFYEIAK 169 (199)
Q Consensus 163 ~~~~l~~ 169 (199)
+|++|.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=6.1e-30 Score=181.28 Aligned_cols=157 Identities=22% Similarity=0.361 Sum_probs=121.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+||+++|.+|||||||++++..+.+.. ..++.+..... .. ...+.+.+||+||++.+..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 357999999999999999999998766643 45555554432 22 24578999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||++++++++....|+..+.... ..+.|++|++||.|+.+.. ...+..... ....+.++++||++|.|+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999888887765432 3678999999999986532 222221111 1123357789999999999
Q ss_pred HHHHHHHHHH
Q 029103 162 ELFYEIAKRL 171 (199)
Q Consensus 162 ~~~~~l~~~~ 171 (199)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.8e-28 Score=172.03 Aligned_cols=157 Identities=32% Similarity=0.622 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+++|.++.+...+.++.. +.........+..+.+++||+||++.+......++..+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999887555555544 334445566788899999999999998888888889999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc-----------cCCHHHHHHHHHHhCC-cEEEeccCCC
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR-----------KVKNEEGELYAQENGL-SFLETSAKSA 157 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (199)
|++++.++.... .|+..+... ..+.|+++|+||+|+.... .+...++..+...++. +|+++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999987764 577777665 3589999999999987544 2346677778888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 029103 158 HNVNELFYEIAK 169 (199)
Q Consensus 158 ~~v~~~~~~l~~ 169 (199)
+|+.++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=4e-28 Score=177.43 Aligned_cols=167 Identities=32% Similarity=0.543 Sum_probs=144.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
.+....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 44456899999999999999999988888888888888888888888878888999999999999999988899999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++++|||+++..++..+..|+..+... ..+.|+++++||.|+.+.. .. .+...+....++.++++|+++|.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQ-VK-ARQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCcccc-CC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999988765 3578999999999986432 22 23345677788999999999999999999
Q ss_pred HHHHHHHHhh
Q 029103 165 YEIAKRLAEV 174 (199)
Q Consensus 165 ~~l~~~~~~~ 174 (199)
.+|++.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=7.3e-29 Score=174.88 Aligned_cols=157 Identities=24% Similarity=0.354 Sum_probs=124.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|.+|||||||++++.+..+.. +.++.+.... . .....+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 58999999999999999999876543 4555544442 2 23346789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG------LSFLETSAKSAHNVNELF 164 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~ 164 (199)
++++.+++....|+..+... ...+.|+++++||+|+.+. .+..+...+....+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999998888887653 2356899999999998642 44555555443222 367899999999999999
Q ss_pred HHHHHHHHhhC
Q 029103 165 YEIAKRLAEVN 175 (199)
Q Consensus 165 ~~l~~~~~~~~ 175 (199)
+||.+.+....
T Consensus 154 ~~l~~~~~~~~ 164 (169)
T cd04158 154 DWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHhhcc
Confidence 99998877654
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.6e-29 Score=180.16 Aligned_cols=161 Identities=19% Similarity=0.336 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
..++||+++|++|||||||++++..+.+.. ..++.+..+. . +....+.+.+||+||++.+...+..++..+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998776654 4455554443 2 2234578999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHH-HHH----HHHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEG-ELY----AQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|++++++++....++..+... ...+.|+++++||.|+.+.. ...+. ..+ .....+.++++||++|+|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999998888777665432 23578999999999986532 22222 111 11122356799999999999
Q ss_pred HHHHHHHHHHHhhC
Q 029103 162 ELFYEIAKRLAEVN 175 (199)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (199)
++|++|.+.+.+.+
T Consensus 168 e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 168 EGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.2e-29 Score=177.07 Aligned_cols=152 Identities=20% Similarity=0.352 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||++++..+.+.. +.++.+.... ... ...+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998777653 5555554432 222 24578999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHH-HHHHH----HHhCCcEEEeccCCCCCHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|++++.+++....|+..+... ...+.|+++++||+|+.+.. ...+ ...+. ...++.++++||++|+|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999888877766443 23568999999999986432 2222 22221 1123457899999999999999
Q ss_pred HHHHH
Q 029103 165 YEIAK 169 (199)
Q Consensus 165 ~~l~~ 169 (199)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 108
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=175.68 Aligned_cols=164 Identities=36% Similarity=0.604 Sum_probs=152.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..+||+++|.+|||||+|..++..+.|.+.+.++++ +.+.+...+++....+.++||+|++++..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 368999999999999999999999999999999887 6677777888999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
||++++..||+.+..++..+.... ...+|+++|+||+|+...+.++.+++..++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999985543 4668999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+-.
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998877
No 109
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.1e-28 Score=175.21 Aligned_cols=160 Identities=19% Similarity=0.389 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-----CeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-----EVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+||+++|.+|||||||++++..+.+.+.+.++.+.+.......+. +..+.+.+||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999998888788888877766666653 467899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCcccccCCHH----HHHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQG-------------------NPNLIMFLVANKVDLEEKRKVKNE----EGELYA 142 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 142 (199)
+|+|||++++.+++.+..|+..+.... ..+.|+++|+||.|+.+.+..... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987631 357899999999999765544443 345678
Q ss_pred HHhCCcEEEeccCCCCC----------HHHHHHHHHHH
Q 029103 143 QENGLSFLETSAKSAHN----------VNELFYEIAKR 170 (199)
Q Consensus 143 ~~~~~~~~~~s~~~~~~----------v~~~~~~l~~~ 170 (199)
.+.+++.+..++.++.. +...|+.+++.
T Consensus 161 ~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 161 EQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 88999999999887642 55666655543
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=9.8e-29 Score=174.87 Aligned_cols=156 Identities=21% Similarity=0.308 Sum_probs=121.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+++|++|||||||+++|.+..+ ....++.+... ..+..+ .+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34679999999999999999999997643 33445544332 333333 47889999999998888889999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCCCH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNV 160 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v 160 (199)
++|||++++.++.....|+..+... ...+.|+++++||+|+.+.. ...+...... ..+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999998888888776543 24689999999999986533 3333333332 34568999999999999
Q ss_pred HHHHHHHHH
Q 029103 161 NELFYEIAK 169 (199)
Q Consensus 161 ~~~~~~l~~ 169 (199)
+++|++|..
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.4e-28 Score=169.96 Aligned_cols=160 Identities=28% Similarity=0.397 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|.+|||||||+++|.++.+.....++. ........+.+..+.+.+||+||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988765433221 122333445667789999999999888777777889999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHHHHHHh-C-CcEEEeccCCCCCHHHHHH
Q 029103 91 DITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQEN-G-LSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++.+++.+. .|+..+.... .+.|+++++||+|+.+..... ......+.... + .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 6888777654 589999999999997644321 22222333333 2 3799999999999999999
Q ss_pred HHHHHHHh
Q 029103 166 EIAKRLAE 173 (199)
Q Consensus 166 ~l~~~~~~ 173 (199)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887754
No 112
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-30 Score=176.70 Aligned_cols=169 Identities=31% Similarity=0.524 Sum_probs=160.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+|++|+|..++||||++.+++.+.|...+..+++++.....+.+....+...+||++|+++|+.+...|++++.+-+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 35789999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+||+-+|..||+.+..|++.+... ...+|.++|-||+|+.+..++...+++.+++..++.++.+|++...++..+|..|
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL 176 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL 176 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 999999999999999999999876 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 029103 168 AKRLAEVNPS 177 (199)
Q Consensus 168 ~~~~~~~~~~ 177 (199)
++.+.++.++
T Consensus 177 aeK~~q~~kq 186 (246)
T KOG4252|consen 177 AEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHH
Confidence 9999887655
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=170.67 Aligned_cols=167 Identities=29% Similarity=0.527 Sum_probs=148.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
...+|+.|+|..++|||+|+..+..+.|+..+.++.. +-+...+.+ ++..+.+.+|||+|+++|+.+++..++.+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3578999999999999999999999999999999887 444555667 59999999999999999999998899999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc------------cccCCHHHHHHHHHHhC-CcEEEe
Q 029103 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE------------KRKVKNEEGELYAQENG-LSFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 152 (199)
++||++.++.+++.+ .+|+.++..+ .++.|+++|++|.|+.+ ...+...++..++++.| ..|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~-cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHH-CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhh-CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999998 4899999888 58999999999999963 23567788899999998 679999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCC
Q 029103 153 SAKSAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~~~~~~ 176 (199)
||++..|++++|+..+.......+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999887553
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.3e-28 Score=170.20 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=116.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+|+++|++|||||||+++|.+... ...+.++.+..... +....+.+.+||+||++.+..++..++..+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998653 34455555543322 2234678999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~ 162 (199)
|++++.++.....|+..+.+.. ..+.|+++++||+|+.+... ..+..... ....+.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999988888887765532 35799999999999865321 22221111 11234589999999999999
Q ss_pred HHHHHHH
Q 029103 163 LFYEIAK 169 (199)
Q Consensus 163 ~~~~l~~ 169 (199)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=6.8e-28 Score=169.57 Aligned_cols=153 Identities=22% Similarity=0.190 Sum_probs=118.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
+|+++|++|||||||++++.+. +...+.++.+... ..+.. ..+.+++||+||++.+..++..++.++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999866 5555566665542 23333 45788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHH----HHHHHHHh--CCcEEEeccCCC------C
Q 029103 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEE----GELYAQEN--GLSFLETSAKSA------H 158 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~s~~~~------~ 158 (199)
.+++.+++.+..|+..+.... ..+.|+++++||.|+.+.....+.. ...++.+. .+.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999988887543 3678999999999997644221111 12222222 356788999998 8
Q ss_pred CHHHHHHHHHH
Q 029103 159 NVNELFYEIAK 169 (199)
Q Consensus 159 ~v~~~~~~l~~ 169 (199)
|+.+.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999974
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=8.5e-28 Score=167.87 Aligned_cols=152 Identities=23% Similarity=0.387 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
+|+++|++|||||||++++.++.+.. ..++.+... ..... ...+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999877654 344444333 22322 345789999999999988888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHH------HHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE------LYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
.+++.++.....|+..+.... ..+.|+++++||+|+.+... ..+.. .+....+++++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999998888888877765432 36899999999999864321 22221 1122234578999999999999999
Q ss_pred HHHHH
Q 029103 165 YEIAK 169 (199)
Q Consensus 165 ~~l~~ 169 (199)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.8e-27 Score=168.48 Aligned_cols=154 Identities=23% Similarity=0.360 Sum_probs=118.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|++|+|||||++++..+.+.. ..++.+..+. .... ....+.+||+||++.+...+..++..+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999998877654 3455544432 2222 35789999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHH-HHHHH----HHhCCcEEEeccCCCCCHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEE-GELYA----QENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~~~~~v~~ 162 (199)
|+|.++++++.....++..+.+. ...+.|+++++||+|+.+.. ...+ ...+. ...+++++++||++|+|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999998888877766666443 23678999999999986522 2222 22221 23456789999999999999
Q ss_pred HHHHHHH
Q 029103 163 LFYEIAK 169 (199)
Q Consensus 163 ~~~~l~~ 169 (199)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 118
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=3.8e-27 Score=166.81 Aligned_cols=158 Identities=27% Similarity=0.438 Sum_probs=122.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+++|+.|||||||+++|..+.... ..++.+.. ...+.+. ++.+.+||++|+..+...|+.++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeC--cEEEEEEeccccccccccceeecccccee
Confidence 3679999999999999999999998654333 34444433 3334443 46788999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH------HhCCcEEEeccCCCCC
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENGLSFLETSAKSAHN 159 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~ 159 (199)
|||+|.++.+.+.+....+..+.... ..+.|++|++||.|+.+.. ...+...... ...+.++.+|+.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~--~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM--SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS--THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc--hhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 99999999988888887777765543 4689999999999987633 3333333222 2345589999999999
Q ss_pred HHHHHHHHHHHH
Q 029103 160 VNELFYEIAKRL 171 (199)
Q Consensus 160 v~~~~~~l~~~~ 171 (199)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 119
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=5.1e-27 Score=156.86 Aligned_cols=163 Identities=21% Similarity=0.280 Sum_probs=130.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
+..+++|+++|..||||||++++|.+.. .+...++.+...... ....+++++||.+|+....+.|++||..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4569999999999999999999998543 444555555444333 33467899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCH----HHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKN----EEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
|+|+|.+|+..+++....+..+.. ..-.+.|++|++||.|++....... .....+++.++++++.||+.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999999888877766544 3247789999999999974222211 22355557788999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
+.++||...++++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=3.1e-27 Score=164.75 Aligned_cols=151 Identities=23% Similarity=0.325 Sum_probs=117.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|.+|||||||++++.+..+ ....++.+..... ... ....+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998763 3344445444332 222 25689999999999999899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++++++.....|+..+.... ..+.|+++++||+|+.... ...+..... ....++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888887765533 4689999999999987543 222222222 22346799999999999999999
Q ss_pred HHHH
Q 029103 166 EIAK 169 (199)
Q Consensus 166 ~l~~ 169 (199)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=8.3e-27 Score=167.36 Aligned_cols=157 Identities=22% Similarity=0.323 Sum_probs=120.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
....+|+++|++|||||||++++.++.+. .+.++.+.. ...+.++ ...+.+||+||++.+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 35789999999999999999999987653 244444332 2233333 467889999999988888889999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH----------------hCCcEE
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----------------NGLSFL 150 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 150 (199)
+|+|+++..+++....|+..+.+.. ..+.|+++++||+|+.. ............. ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999988888888887776543 36799999999999864 2334444444332 224689
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029103 151 ETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~l~~~~ 171 (199)
++||++|+|+.++|+||.+++
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=4.7e-27 Score=165.23 Aligned_cols=152 Identities=24% Similarity=0.308 Sum_probs=114.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFF------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+|+++|++|+|||||+++|.+.... ....++.+... ..+..+ ...+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 12233333333 223333 5788999999999999889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH-------hCCcEEEeccCCC
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NGLSFLETSAKSA 157 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 157 (199)
+++|+|.+++++++....|+..+.+.. ..+.|+++++||+|+.+.. ...+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888887766543 4689999999999986532 22333333221 3467999999999
Q ss_pred CCHHHHHHHHHH
Q 029103 158 HNVNELFYEIAK 169 (199)
Q Consensus 158 ~~v~~~~~~l~~ 169 (199)
+|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999865
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=3.7e-27 Score=164.41 Aligned_cols=151 Identities=24% Similarity=0.359 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
||+++|++++|||||++++..+.+.. ..++.+.+.. . ++.....+++||+||++.+...+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998766543 3344443332 2 22345789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHH-HHHH----HHhCCcEEEeccCCCCCHHHHHH
Q 029103 92 ITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYA----QENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
++++.++.....++..+.+ ....+.|+++++||+|+.+.. ...+. ..+. ...+.+++++|++++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887766655554433 334679999999999986532 12222 1111 11234699999999999999999
Q ss_pred HHHH
Q 029103 166 EIAK 169 (199)
Q Consensus 166 ~l~~ 169 (199)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 124
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=9e-26 Score=159.60 Aligned_cols=143 Identities=46% Similarity=0.729 Sum_probs=128.6
Q ss_pred CCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Q 029103 33 GQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG 112 (199)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 112 (199)
+.|.+.+.++++.++....+.+++..+++.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34666778899989988888888999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 113 NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 113 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
....|+++|+||+|+.+...+...++..++..+++.|+++||++|.|+.++|++|.+.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 577899999999999876677788888888888999999999999999999999999997643
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.7e-26 Score=172.20 Aligned_cols=141 Identities=26% Similarity=0.470 Sum_probs=120.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-------------CeEEEEEEEeCCCccccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-------------EVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~l~d~~g~~~~~ 73 (199)
+...+||+|+|..|||||||++++.++.+...+.++++.++....+.++ +..+.++|||++|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 3468999999999999999999999998888788888888776666554 246889999999999999
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCcccc---c---CCH
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN------------PNLIMFLVANKVDLEEKR---K---VKN 135 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~ 135 (199)
.++..+++++|++|+|||+++..+++.+..|+..+..... .++|++||+||+|+.+.+ . +..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987531 258999999999996542 2 357
Q ss_pred HHHHHHHHHhCC
Q 029103 136 EEGELYAQENGL 147 (199)
Q Consensus 136 ~~~~~~~~~~~~ 147 (199)
.+++.++..+++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 889999998874
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.8e-26 Score=164.81 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=117.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
+..++|+++|.+|||||||++++.++.+.. +.++.+... ..... ..+++.+||+||+..+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 457999999999999999999999876542 233333222 22223 3477899999999999889999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHH------------HhCCcEEEecc
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------------ENGLSFLETSA 154 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~ 154 (199)
+|+|+++++++.....++..+.+. ...+.|+++++||.|+... .+..+...... .....++++|+
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999998888777766543 2367899999999998642 23333222211 02345899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAKR 170 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (199)
+++.|++++++||...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=6e-26 Score=157.80 Aligned_cols=151 Identities=26% Similarity=0.367 Sum_probs=117.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEEC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (199)
|+++|++|||||||+++|.+..+.....++.+..... ... ..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999988777666666655442 222 237899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHHH
Q 029103 93 TSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 93 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++.+++.....|+..+.... ..+.|+++++||.|+.+.... ....... ...+++++++|++++.|+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 99988888877777665432 367899999999998654321 1111111 123467899999999999999999
Q ss_pred HHH
Q 029103 167 IAK 169 (199)
Q Consensus 167 l~~ 169 (199)
|.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 875
No 128
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=2e-25 Score=157.81 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=116.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~ 83 (199)
..+....++|+++|++|||||||++++.+..+.. ..++.+.... .+... ...+.+||++|+..+...+..++..+
T Consensus 8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 8 LRKSSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred hhccCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCC
Confidence 3444568999999999999999999999765432 3444443332 22233 46788999999988888888889999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--------cEEEecc
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--------SFLETSA 154 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~ 154 (199)
|++++|+|+++..++.....++..+... ...++|+++++||.|+.+... . ..+....++ +++++||
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~---~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--A---EEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--H---HHHHHHcCCcccCCCeEEEEEeEC
Confidence 9999999999988888777666665443 235799999999999865332 1 122222232 4789999
Q ss_pred CCCCCHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAK 169 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~ 169 (199)
++|+|++++|+||.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2e-25 Score=157.04 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---------ccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPMYYR 81 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---------~~~~~~~ 81 (199)
.+|+++|.+|||||||+++|.+..+.....+.. +..............+.+|||||+..... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFT--TKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCc--ccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999876532211111 11122222333457899999999742110 0011112
Q ss_pred CCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 82 GAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
..|++++|+|+++..+ ++....|+..+... ..+.|+++++||+|+.+...... ...+....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh-cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 3689999999997654 35556777777654 24789999999999865443322 4455555678899999999999
Q ss_pred HHHHHHHHHHHH
Q 029103 160 VNELFYEIAKRL 171 (199)
Q Consensus 160 v~~~~~~l~~~~ 171 (199)
++++|++|.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.7e-25 Score=158.98 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=112.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC--C-----CCCCcC------ccceeEEEEEEEe-----CCeEEEEEEEeCCCccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ--F-----FDFQES------TIGAAFFTQVLSL-----NEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~--~-----~~~~~~------~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~~~~ 73 (199)
+|+++|++++|||||+++|.+.. + ...+.+ ..+.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998732 1 111111 1123333322222 5667889999999999999
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc---EE
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS---FL 150 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~ 150 (199)
..+..++..+|++|+|+|+++..+.+....|.... ..+.|+++++||+|+.+.. .......++...+++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88889999999999999999876555555554322 2467899999999986422 122334556666653 89
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029103 151 ETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~l~~~~ 171 (199)
++||++|+|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998765
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.4e-25 Score=158.08 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=109.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----cccccccc---ccCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----~~~~~~~~---~~~~d 84 (199)
+|+++|.+|||||||+++|.+........+..............+ ...+.+|||||..+ +..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999986543211111111111111122222 24789999999642 22233333 34699
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCH
Q 029103 85 AAVVVYDITSM-DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNV 160 (199)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v 160 (199)
++++|+|++++ .+++.+..|.+.+..... .+.|+++|+||+|+.+.... ......+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888876542 47899999999998664443 2333344444 3778999999999999
Q ss_pred HHHHHHHHHHH
Q 029103 161 NELFYEIAKRL 171 (199)
Q Consensus 161 ~~~~~~l~~~~ 171 (199)
+++|++|.+++
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=8.4e-25 Score=151.70 Aligned_cols=158 Identities=29% Similarity=0.521 Sum_probs=126.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
++||+++|.+|+|||||++++.+..+...+.++.+.+.........+..+.+.+||+||+..+...+..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999886666666777777666666777668899999999999988888888999999999
Q ss_pred EECCCH-HHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 90 YDITSM-DSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|+... .++.... .|+..+......+.|+++++||.|+.... ........+......+++++|++++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999866 5555544 66666665544488999999999987643 33444455555556789999999999999999986
Q ss_pred H
Q 029103 168 A 168 (199)
Q Consensus 168 ~ 168 (199)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 133
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.9e-26 Score=154.39 Aligned_cols=163 Identities=22% Similarity=0.330 Sum_probs=130.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
...+++|+++|.-++||||++..|..+.+... .|+++......... ++.+++||.+|+++++.+|+.|+.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 45799999999999999999999987776554 66666555444443 78899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCccccc---CCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRK---VKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
|||+|.+|++.+...+..+..+.... ....|+++.+||.|++.... ++......-.....+.+..++|.+|+|+.+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 99999999999999887666666554 47899999999999976443 222222222223456789999999999999
Q ss_pred HHHHHHHHHHhh
Q 029103 163 LFYEIAKRLAEV 174 (199)
Q Consensus 163 ~~~~l~~~~~~~ 174 (199)
.++||.+.+..+
T Consensus 169 gl~wl~~~~~~~ 180 (181)
T KOG0070|consen 169 GLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHhcc
Confidence 999999988653
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=6.7e-25 Score=168.79 Aligned_cols=162 Identities=20% Similarity=0.162 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cccc---ccccCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAP---MYYRGA 83 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~---~~~~~~ 83 (199)
..|+|+|.|+||||||+++|++....-...+..+.......+.+. ....+.+||+||..+.. .+.. ..+..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999755332122222222222223222 33568899999974321 2222 245678
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+++++|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+.+...........+....+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999987788888899888877643 478999999999987654433334444555667899999999999999
Q ss_pred HHHHHHHHHHHh
Q 029103 162 ELFYEIAKRLAE 173 (199)
Q Consensus 162 ~~~~~l~~~~~~ 173 (199)
+++++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=3.5e-25 Score=160.66 Aligned_cols=157 Identities=22% Similarity=0.185 Sum_probs=112.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPM 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~~~~~~ 78 (199)
...++|+|+|++|||||||++++.+...........+.+.........+. ..+.+||+||.... ...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 34689999999999999999999987543222222222333333333332 37889999997321 1111 2
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
.+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.+..... ......+.+++++|++++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence 35689999999999998888777777777766655678999999999986543221 3344566789999999999
Q ss_pred CHHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKRL 171 (199)
Q Consensus 159 ~v~~~~~~l~~~~ 171 (199)
|+++++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=2.1e-24 Score=151.11 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
+.|+++|.+|||||||+++|.+.. +.....+..+.+.......... ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998632 2222223333333333333332 457899999999988776667788999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHH---hCCcEEEeccCCCCC
Q 029103 88 VVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQE---NGLSFLETSAKSAHN 159 (199)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~ 159 (199)
+|+|+++ +++.+.+ ..+... ...|+++++||+|+.+.... ...+....... .+.+++++|+++++|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 3333322 222222 22489999999998653211 11222333333 467899999999999
Q ss_pred HHHHHHHHHH
Q 029103 160 VNELFYEIAK 169 (199)
Q Consensus 160 v~~~~~~l~~ 169 (199)
++++|+.|..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 137
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=8.7e-24 Score=145.36 Aligned_cols=153 Identities=46% Similarity=0.787 Sum_probs=122.0
Q ss_pred EEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECC
Q 029103 15 LLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT 93 (199)
Q Consensus 15 v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (199)
++|++|+|||||++++.+... .....++. ................+.+||+||+..+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998766 34344444 6666777777777889999999999888887788899999999999999
Q ss_pred CHHHHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCcccccCCHHH-HHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 94 SMDSFERAKKWV-QELQRQGNPNLIMFLVANKVDLEEKRKVKNEE-GELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 94 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
++.+......|. .........+.|+++++||.|+.......... ........+.+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887762 33334446789999999999987654433322 4455566778999999999999999999885
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2e-23 Score=152.98 Aligned_cols=166 Identities=40% Similarity=0.563 Sum_probs=136.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|+.|||||||+++|.+..+...+.++.+..+...........+++.+|||+|++++..++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998888888887777777777766688999999999999999999999999999999
Q ss_pred EECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHh---CCcEEEec
Q 029103 90 YDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQEN---GLSFLETS 153 (199)
Q Consensus 90 ~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s 153 (199)
+|.++..+ .+....|+..+........|+++++||+|+.... .............. ...++.+|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99998544 4555789989888766689999999999997653 22222222222222 34489999
Q ss_pred cC--CCCCHHHHHHHHHHHHHhhC
Q 029103 154 AK--SAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 154 ~~--~~~~v~~~~~~l~~~~~~~~ 175 (199)
++ .+.++.++|..+...+.+..
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhh
Confidence 99 99999999999999997543
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.1e-23 Score=148.01 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
.|+|+|.+|+|||||+++|.++.+.................... .....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999877655433333322222222222 13578899999999988888888889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH-HHHHHHHH------HhCCcEEEeccCCCCCHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN-EEGELYAQ------ENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~v~~~ 163 (199)
|+++....+ ....+..+.. .+.|+++++||+|+.+...... .....+.. ..+++++++|+++++|+.++
T Consensus 82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743211 1222223332 4678999999999864321111 11111111 12367999999999999999
Q ss_pred HHHHHHHHH
Q 029103 164 FYEIAKRLA 172 (199)
Q Consensus 164 ~~~l~~~~~ 172 (199)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999988754
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2.3e-24 Score=147.72 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc-----cccccccccccCCCEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-----~~~~~~~~~~~~~d~~ 86 (199)
||+++|++|||||||+++|.+..+. +.++.+.+ + .-.+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~-----~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------Y-----NDGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------E-----cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999876542 22222111 1 11589999972 2333333 47899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY 165 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~ 165 (199)
++|||++++.++.. ..|...+ ..|+++++||+|+.+. .........+....+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887644 2343322 2389999999998652 3345556666777776 799999999999999999
Q ss_pred HHH
Q 029103 166 EIA 168 (199)
Q Consensus 166 ~l~ 168 (199)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=2.6e-23 Score=144.68 Aligned_cols=148 Identities=21% Similarity=0.187 Sum_probs=107.3
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc------cccccc--CCCEE
Q 029103 15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYYR--GAAAA 86 (199)
Q Consensus 15 v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~------~~~~~~--~~d~~ 86 (199)
|+|.+|+|||||++++.+........+..+.+.....+..++ ..+.+|||||+..+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998754433334344444444444443 57899999998776542 445554 89999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|+|+++++.. ..+...+.. .+.|+++++||+|+.+...... ....+...++.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999876432 233334433 3688999999999976544433 245667777899999999999999999999
Q ss_pred HHHHH
Q 029103 167 IAKRL 171 (199)
Q Consensus 167 l~~~~ 171 (199)
|.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98764
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=6.8e-24 Score=152.73 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCCCCCC------------cCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK--GQFFDFQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA 76 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~ 76 (199)
.+|+++|.+++|||||+++|.. +.+.... ....+.+.......+......+.+|||||++.|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1223444444555556667889999999999999999
Q ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHH-------HhCCc
Q 029103 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQ-------ENGLS 148 (199)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 148 (199)
..++..+|++++|+|+++.. ......++..+.. .+.|+++++||+|+.+.... ...+...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998732 2233334443332 36789999999998643221 1223333332 23678
Q ss_pred EEEeccCCCCCHHHH------HHHHHHHHHhh
Q 029103 149 FLETSAKSAHNVNEL------FYEIAKRLAEV 174 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~------~~~l~~~~~~~ 174 (199)
++++|+++|.|+.++ +++|.+.+.+.
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 999999999876433 44555555543
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=2.4e-24 Score=155.89 Aligned_cols=155 Identities=25% Similarity=0.245 Sum_probs=103.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc-----------ccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ-----------ERYHSLA 76 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~-----------~~~~~~~ 76 (199)
...++|+++|.+|||||||+++|.+..+.....+ +.+......... .+.+|||||. +.+...+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4578999999999999999999998765433333 334333333222 5889999993 4454444
Q ss_pred ccccc----CCCEEEEEEECCCHHHH-H---------HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH
Q 029103 77 PMYYR----GAAAAVVVYDITSMDSF-E---------RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA 142 (199)
Q Consensus 77 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 142 (199)
..++. .++++++|+|.++.... + ....++..+. ..+.|+++|+||+|+.+.. ......+.
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 44443 45788888887643211 0 0112222222 2478999999999986533 33445555
Q ss_pred HHhCC---------cEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 143 QENGL---------SFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 143 ~~~~~---------~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
...++ +++++||++| |++++|++|.+.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 55554 4799999999 99999999999876544
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.4e-23 Score=159.25 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cccccc---ccCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMY---YRGA 83 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~---~~~~ 83 (199)
..|+|+|.|+||||||+++|++........+..+.......+.+.+ ...+.+||+||..+.. .+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999997653221112222222222333332 3678999999974322 233333 4569
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 84 AAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
+++++|+|+++. ++++.+..|.+++..+. ..+.|+++|+||+|+.+... .......+....+.+++++||++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 67788888888776653 25789999999999876433 2334455666667899999999999
Q ss_pred CHHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKRL 171 (199)
Q Consensus 159 ~v~~~~~~l~~~~ 171 (199)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=1.6e-23 Score=162.33 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=109.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc---------cccccccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAPMYY 80 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~---------~~~~~~~~~~ 80 (199)
.++|+++|.+|||||||+|+|.+...........+.+.....+.+.+ ...+.+|||+|.. .|...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 48999999999999999999998654322222333444445555533 3478899999972 122211 247
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+.... ... .....+++.+||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCCH
Confidence 88999999999999888777766666666654567899999999998643211 111 122346899999999999
Q ss_pred HHHHHHHHHH
Q 029103 161 NELFYEIAKR 170 (199)
Q Consensus 161 ~~~~~~l~~~ 170 (199)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 146
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.9e-23 Score=143.10 Aligned_cols=148 Identities=20% Similarity=0.275 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------ccccc--ccC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMY--YRG 82 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~--~~~ 82 (199)
++|+++|.|++|||||+|+|++.+..-...+..+++.....+...+ ..+.++|+||.-.... ....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999875444445555555555555555 6788999999643322 22333 368
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
.|++++|+|+++.+ .-.++..++.+. ++|+++++||+|....... ......+.+..+++++++||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGI-EIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999997643 323444555544 6889999999998765443 3346778888999999999999999999
Q ss_pred HHHHH
Q 029103 163 LFYEI 167 (199)
Q Consensus 163 ~~~~l 167 (199)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99865
No 147
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=1.7e-23 Score=157.69 Aligned_cols=158 Identities=18% Similarity=0.073 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccccCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGA 83 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~~~ 83 (199)
+|+++|.||||||||+|+|.+..... ..+..+++.............++.+|||||...... ....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999876432 112122222211122222335789999999754321 123457899
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNE 162 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 162 (199)
|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999998765543 334444433 46889999999998643221 2233344444443 799999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 029103 163 LFYEIAKRLAEVNP 176 (199)
Q Consensus 163 ~~~~l~~~~~~~~~ 176 (199)
++++|.+.+.+..+
T Consensus 155 L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 155 LAAFIEVHLPEGPF 168 (270)
T ss_pred HHHHHHHhCCCCCC
Confidence 99999998866544
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=4.7e-23 Score=137.02 Aligned_cols=114 Identities=32% Similarity=0.612 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
||+|+|++|||||||+++|.+..+. .......+.++.............+.+||++|.+.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988766 23344455566666777777777799999999998888888889999999999
Q ss_pred EECCCHHHHHHHHH---HHHHHHHhCCCCceEEEEEeCCC
Q 029103 90 YDITSMDSFERAKK---WVQELQRQGNPNLIMFLVANKVD 126 (199)
Q Consensus 90 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D 126 (199)
||++++.+++.+.. |+..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 99999999988754 45555554 45699999999998
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3e-23 Score=146.89 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=106.1
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc----cccc---cccccCCCEEE
Q 029103 15 LLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLA---PMYYRGAAAAV 87 (199)
Q Consensus 15 v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~----~~~~---~~~~~~~d~~i 87 (199)
++|++|||||||+++|.+........+..+........... ....+.+||+||.... ..++ ...+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999875421111111122222222222 1467889999997422 2222 23467899999
Q ss_pred EEEECCCH------HHHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103 88 VVYDITSM------DSFERAKKWVQELQRQGN-------PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
+|+|++++ .+++....|...+..... .+.|+++++||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777777665432 47899999999999765443333233444456678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAKR 170 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (199)
+++.|+++++++|.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=8e-23 Score=141.91 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYYR 81 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~~~ 81 (199)
++|+++|++|+|||||++++.+..... ...+............. ....+.+||+||...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999765321 11222222222333333 3457889999997655432 234577
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... .....+.+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998766655433322 457899999999998764433 334556789999999999999
Q ss_pred HHHHHHHHHH
Q 029103 162 ELFYEIAKRL 171 (199)
Q Consensus 162 ~~~~~l~~~~ 171 (199)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1.9e-22 Score=156.15 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=107.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeE--EEEEEEeCCeEEEEEEEeCCCccc-ccccc-------c
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAF--FTQVLSLNEVTIKFDIWDTAGQER-YHSLA-------P 77 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~l~d~~g~~~-~~~~~-------~ 77 (199)
++.++|+++|.+|||||||+|+|.+..+.. ..+...+++ .......+ +.++.+|||||... +..+. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 456799999999999999999999876542 222222222 22333333 45789999999843 22221 1
Q ss_pred ccccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEecc
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSA 154 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~ 154 (199)
..+..+|++++|+|..+. +... ..|+..+... +.|.++|+||+|+.+. ............+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 236789999999997653 3333 3455555433 4566889999998643 1333444444433 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCC
Q 029103 155 KSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
++|.|++++|++|.+.+.+..+-
T Consensus 199 ktg~gv~eL~~~L~~~l~~~~~~ 221 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKISPWL 221 (339)
T ss_pred cCccCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999988776544
No 152
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=133.42 Aligned_cols=170 Identities=24% Similarity=0.455 Sum_probs=147.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
.+....+||.++|.+..|||||+-.+.++.+.+.+..+.++....+++.+.+..+.+.+||.+|++++....+..-..+-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 34467999999999999999999999998888888889999999999999999999999999999999998888888888
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc----c-CCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR----K-VKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~-~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+++++||++++.++..+.+||.+.+..-...+| +++++|.|+.-.. + .-...+..+++..+.+.+++|+..+.+
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999999999998887667777 7789999973211 1 113446788889999999999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 029103 160 VNELFYEIAKRLAEVN 175 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~ 175 (199)
+.++|..+...+-...
T Consensus 174 v~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLP 189 (205)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999998877776544
No 153
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=2.7e-21 Score=128.20 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=139.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-cccccccccCCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HSLAPMYYRGAA 84 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-~~~~~~~~~~~d 84 (199)
....||+++|..++|||++++.|.-+... ....+++...|......-.+..-.+.++||.|...+ .++-..|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 45789999999999999999998876543 334566655555555555566677999999998777 677788999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++++||+..|++||+.+..+-..+.... ...+|++|++||.|+.+..++....+..+++...+..+++++.+..++-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999988766666665544 478999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 029103 164 FYEIAKRLAEVN 175 (199)
Q Consensus 164 ~~~l~~~~~~~~ 175 (199)
|..+...+...+
T Consensus 167 f~~l~~rl~~pq 178 (198)
T KOG3883|consen 167 FTYLASRLHQPQ 178 (198)
T ss_pred HHHHHHhccCCc
Confidence 999988876643
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=3.4e-22 Score=159.14 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=111.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~ 79 (199)
..++|+++|++|||||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999975421 11223333444444444544 56789999998654432 2356
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+..+|++++|||++++.+.+.. |+..+.. .+.|+++|+||+|+... ....+...++.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776654 6555532 46789999999998643 12344566778899999997 69
Q ss_pred HHHHHHHHHHHHHhhC
Q 029103 160 VNELFYEIAKRLAEVN 175 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~ 175 (199)
++++|+.|.+.+.+..
T Consensus 348 I~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 348 IKALVDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=3.5e-22 Score=142.91 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc--------------cceeEEEEEEEeCCeEEEEEEEeCCCccccccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST--------------IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP 77 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~ 77 (199)
+|+++|.+|+|||||+++|.+.......... .+.+..............+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999986554322111 11222222222333356899999999988888888
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHHHHHHH-----------
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGELYAQE----------- 144 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----------- 144 (199)
.++..+|++++|+|.+++..... ..++..+.. .+.|+++++||+|+....... ..........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 88999999999999987643322 233333332 578899999999987532221 1112222222
Q ss_pred ---hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 145 ---NGLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 145 ---~~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
...+++++|+++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3577999999999999999999998863
No 156
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.3e-21 Score=154.27 Aligned_cols=159 Identities=23% Similarity=0.210 Sum_probs=112.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc----ccccccc---ccCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY----HSLAPMY---YRGAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~----~~~~~~~---~~~~d 84 (199)
.|+++|.|+||||||+++|++....-...+..+.......+... ....+.+||+||..+. ..+...| +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 79999999999999999999765321111222222222222222 1457899999997432 1233333 45689
Q ss_pred EEEEEEECCCH---HHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 85 AAVVVYDITSM---DSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 85 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
++++|+|+++. +.++....|..++..+.. .+.|++||+||+|+.+. ......+....+.+++++||++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 567777778777776542 57899999999998432 2334556666668899999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 029103 160 VNELFYEIAKRLAEVN 175 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~ 175 (199)
+++++++|.+.+.+..
T Consensus 315 I~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 315 LDELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887654
No 157
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.7e-22 Score=146.30 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeC-----------------------------C----
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLN-----------------------------E---- 56 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------------------~---- 56 (199)
++|+++|+.|+|||||+++|.+.... .......+.........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 57999999999999999999754111 0111111111111111100 0
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-- 134 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 134 (199)
...++.|||+||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267999999999988877777788999999999998742111112222323222 234689999999986532211
Q ss_pred HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
......+... .+.+++++||++|+|++++|++|.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1222222222 25789999999999999999999876644
No 158
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9e-23 Score=133.22 Aligned_cols=159 Identities=24% Similarity=0.397 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
..+++|+++|..++||||++-.|+.+.... ..++.++... .+...++++.+||.+|++..+.+|+.||+...++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnve----tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEE----EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 358999999999999999999998665332 3444443332 23456788999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHH-HHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQE-LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|..+.+.++..+..+-. +........|++|.+||.|+++... ..+..++. +..++.+.++++.+|+|+.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999998888888754444 4444468899999999999987543 33333322 2334668999999999999
Q ss_pred HHHHHHHHHHHh
Q 029103 162 ELFYEIAKRLAE 173 (199)
Q Consensus 162 ~~~~~l~~~~~~ 173 (199)
|.|.||.+.+.+
T Consensus 168 eglswlsnn~~~ 179 (180)
T KOG0071|consen 168 EGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHhhccC
Confidence 999999987643
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.7e-22 Score=140.33 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=98.2
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------cccccccCCC
Q 029103 14 VLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYRGAA 84 (199)
Q Consensus 14 ~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~~~d 84 (199)
+++|.+|||||||+++|.+..... ...+..+.+........ ....+.+|||||+..+.. .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999764221 11222222222222222 346788999999876543 3345678899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNEL 163 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 163 (199)
++++|+|..++.+.... .+...+.. .+.|+++++||+|+.+.... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999865433322 22233332 35889999999998754322 222333455 7899999999999999
Q ss_pred HHHHHHHH
Q 029103 164 FYEIAKRL 171 (199)
Q Consensus 164 ~~~l~~~~ 171 (199)
|++|.+++
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 160
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=7.2e-22 Score=162.35 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC-------CCCCCc------CccceeEEEEEEEe-----CCeEEEEEEEeCCCccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQ-------FFDFQE------STIGAAFFTQVLSL-----NEVTIKFDIWDTAGQER 71 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~~ 71 (199)
-.+|+++|+.++|||||+++|+... +...+. ...+.++......+ ++..+.+++|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111 12244444333333 45568999999999999
Q ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc---
Q 029103 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS--- 148 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--- 148 (199)
|...+..++..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.+.. .......+....++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99888999999999999999998765555555544332 367899999999986432 122334555555653
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 149 FLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
++++||++|.|++++|++|.+.+..
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999988754
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=3.6e-22 Score=139.04 Aligned_cols=143 Identities=16% Similarity=0.176 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----ccccccccCCCEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMYYRGAAAAV 87 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~~~~~d~~i 87 (199)
+|+++|.+|+|||||+++|.+.. .. ...+. ...+... .+||+||..... ......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987543 11 11111 1122222 269999963211 11123368999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--cEEEeccCCCCCHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL--SFLETSAKSAHNVNELFY 165 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~~~ 165 (199)
+|+|+++.+++. ..|+..+ ..+.|+++++||.|+.+. .......+....+. +++++|+++++|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876542 2333332 246789999999998652 23445566666664 899999999999999999
Q ss_pred HHHHHHHhhCC
Q 029103 166 EIAKRLAEVNP 176 (199)
Q Consensus 166 ~l~~~~~~~~~ 176 (199)
+|.+.+.+...
T Consensus 141 ~l~~~~~~~~~ 151 (158)
T PRK15467 141 YLASLTKQEEA 151 (158)
T ss_pred HHHHhchhhhc
Confidence 99988866543
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=8.3e-22 Score=156.12 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=109.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc--cccccc------cccC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--HSLAPM------YYRG 82 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~--~~~~~~------~~~~ 82 (199)
.+|+++|.+|||||||+|+|.+........+..+.+.....+...+. ..+.+|||+|..+. ..++.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999976543322333334444444444432 26789999997331 222222 3688
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCCCHH
Q 029103 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVN 161 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 161 (199)
+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+... .... ....+.+ ++.+||++|+|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999988777765555555544445789999999999864211 1111 1123445 5889999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
+++++|.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988653
No 163
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.9e-23 Score=137.44 Aligned_cols=156 Identities=23% Similarity=0.378 Sum_probs=126.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
.++.+.++|..++|||||++.+..+.+.+...++.+.... .+..+.+.+.+||.||+..+...|..|.+.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 4788999999999999999999888877777777765433 345667889999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--------CcEEEeccCCCCC
Q 029103 89 VYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--------LSFLETSAKSAHN 159 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~ 159 (199)
|+|+.|++.+...+..+..+... ...++|++|++||.|++++.. ..++..+.| +.-|.+|+++..+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~-----~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS-----KIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc-----HHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 99999998887777555554443 358999999999999976432 123333344 3469999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029103 160 VNELFYEIAKRLAE 173 (199)
Q Consensus 160 v~~~~~~l~~~~~~ 173 (199)
++-..+||+++...
T Consensus 170 id~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 170 IDITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998754
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.7e-22 Score=160.48 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=108.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~ 79 (199)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||.+.+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999976532 22223333344444444443 56889999998754432 2236
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999998876665433332 3578999999999996533221 34467899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029103 160 VNELFYEIAKRLAE 173 (199)
Q Consensus 160 v~~~~~~l~~~~~~ 173 (199)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.1e-21 Score=141.44 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=105.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------cccc
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHS 74 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~ 74 (199)
......++|+++|.+|+|||||+++|.+..+.....+..+.+........ ...+.+||+||.. .+..
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 34456789999999999999999999986544444445544443332222 3678999999953 2233
Q ss_pred cccccccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHHHHhCCcE
Q 029103 75 LAPMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQENGLSF 149 (199)
Q Consensus 75 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~ 149 (199)
....++.. .+++++|+|.+++..... ..+...+.. .+.|+++++||+|+.+..+... ..........+.++
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELD-LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHH-HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 33444444 367888898876533222 112222222 3678999999999865332211 12333333336789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHh
Q 029103 150 LETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+++|++++.|++++++.|...+.+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999887754
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=5.2e-22 Score=142.71 Aligned_cols=159 Identities=19% Similarity=0.138 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC----CCCC---CCcCccceeEEEEEEEe------------CCeEEEEEEEeCCCccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG----QFFD---FQESTIGAAFFTQVLSL------------NEVTIKFDIWDTAGQER 71 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~----~~~~---~~~~~~~~~~~~~~~~~------------~~~~~~v~l~d~~g~~~ 71 (199)
++|+++|++++|||||+++|+.. .+.. ...+..+.+.......+ ......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1111 11112222222222222 23367899999999876
Q ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHHH-HHHH-----
Q 029103 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEGE-LYAQ----- 143 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~----- 143 (199)
+..........+|++++|+|+++.........+. +... .+.|+++++||+|+....... ..+.. .+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998743332222221 1122 256899999999986432211 11111 1111
Q ss_pred -HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 144 -ENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 144 -~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
..+++++++|+++|+|+++++++|.+++..
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135789999999999999999999988754
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.2e-22 Score=161.45 Aligned_cols=164 Identities=21% Similarity=0.186 Sum_probs=111.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------ccccc-
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLA- 76 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~- 76 (199)
..++|+++|.+|||||||+++|++.... ....+..+.+.....+..++. .+.+|||||... |..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987542 222333333333444445544 467999999632 22221
Q ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHH-HHHHHHhCCcEEEec
Q 029103 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG-ELYAQENGLSFLETS 153 (199)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~-~~~~~~~~~~~~~~s 153 (199)
..+++.+|++++|+|++++.+...+ .++..+.. .+.|+++|+||+|+.+..... ..+. ..+......+++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 2356899999999999988777665 34444433 478999999999996422110 0111 112222346899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVNPSR 178 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~~~~ 178 (199)
|++|.|++++|+.+.+.+.....+.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~~i 388 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDTRI 388 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999998887655443
No 168
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.9e-21 Score=155.14 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=109.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cc---ccccccC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SL---APMYYRG 82 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~---~~~~~~~ 82 (199)
-..|+|+|.|+||||||+++|++....-...+. ++.......+......+.+||+||..... .+ ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 467999999999999999999976533212222 22222222233334678999999963211 11 1224577
Q ss_pred CCEEEEEEECCCH----HHHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC
Q 029103 83 AAAAVVVYDITSM----DSFERAKKWVQELQRQG-----------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL 147 (199)
Q Consensus 83 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 147 (199)
+|++|+|+|+++. +.++.+..+..++..+. ..+.|++||+||+|+.+...... .........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE-FVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH-HHHHHHHHcCC
Confidence 9999999999753 34555555555554432 24689999999999975433222 22222334578
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 148 SFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 148 ~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+++++|+++++|+++++.+|.+.+....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999987754
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=5.8e-22 Score=159.96 Aligned_cols=155 Identities=24% Similarity=0.215 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYR 81 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--------~~~~~~~~~~ 81 (199)
..+|+|+|.+|||||||+|+|.+..... .....+++...........+..+.+|||||.+. +...+..++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~-v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAV-VEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccc-ccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 4689999999999999999999765421 223333333333332222334688999999763 2233455788
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.... ......+....+ .++++||++|.|++
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi~ 188 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGVG 188 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCcH
Confidence 9999999999998654432 334444433 478999999999986422 112222222222 35799999999999
Q ss_pred HHHHHHHHHHHh
Q 029103 162 ELFYEIAKRLAE 173 (199)
Q Consensus 162 ~~~~~l~~~~~~ 173 (199)
++|++|.+.+.+
T Consensus 189 eL~~~i~~~l~~ 200 (472)
T PRK03003 189 DLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHhhccc
Confidence 999999998855
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2e-21 Score=155.65 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=108.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc----------
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA---------- 76 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~---------- 76 (199)
...++|+++|.+|+|||||+++|++.... ....+....+.....+..++ ..+.+|||||...+....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999976432 11122222222222233333 468899999976544322
Q ss_pred -cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hCCcEEE
Q 029103 77 -PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLE 151 (199)
Q Consensus 77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~ 151 (199)
...+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+...........+... ..+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 2357899999999999987665553 34444433 3688999999999872111111111222222 2478999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 152 TSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
+||++|.|+.++|+++.+.+.....+
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~~~ 349 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENANRR 349 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999887765443
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=3.5e-21 Score=134.70 Aligned_cols=156 Identities=18% Similarity=0.098 Sum_probs=103.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------ccccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LAPMYYR 81 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~~~~~~ 81 (199)
..+|+++|++|+|||||++++.+........ ...................+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998764322111 111222222222334456788999999754322 2234578
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCH
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNV 160 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v 160 (199)
.+|++++|+|.+++... ....+...+... +.|+++++||+|+.............+.... ..+++.+|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 89999999999976211 112333333332 6789999999998743322233334444444 368999999999999
Q ss_pred HHHHHHHHHH
Q 029103 161 NELFYEIAKR 170 (199)
Q Consensus 161 ~~~~~~l~~~ 170 (199)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999775
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=5e-21 Score=146.06 Aligned_cols=162 Identities=19% Similarity=0.120 Sum_probs=107.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc--------ccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMYY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~--------~~~~~~~ 80 (199)
..-.|+++|+||||||||+|+|++...... .+...++.............++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~v-s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeec-CCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999999998654321 2222222222222222234789999999975432 2233457
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN 159 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 159 (199)
..+|++++|+|+++... .....++..+. ..+.|+++|+||+|+.............+....+ .+++++|++++.|
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 88999999999987321 11123333333 2368899999999997332222333444444433 6799999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 029103 160 VNELFYEIAKRLAEVN 175 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~ 175 (199)
+++++++|.+.+.+..
T Consensus 159 v~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 159 VDELLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999886644
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=6.5e-21 Score=149.45 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----cc---cccccCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LA---PMYYRGAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----~~---~~~~~~~d 84 (199)
.|+|+|.|+||||||+|+|++.+..-...+..+.......+... ....+.++|+||..+... +. -..+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 79999999999999999999765422222222222223333332 234588999999753221 11 12478899
Q ss_pred EEEEEEECC---CHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEeccCCC
Q 029103 85 AAVVVYDIT---SMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA 157 (199)
Q Consensus 85 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 157 (199)
++++|+|++ +.+.++.+..|+.++..+.. .+.|+++|+||+|+.+.... ......+....+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999988 44567777777777766532 46899999999998654332 223344444444 47899999999
Q ss_pred CCHHHHHHHHHHHHHhhCC
Q 029103 158 HNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~~~~ 176 (199)
.|+++++++|.+.+.+..+
T Consensus 319 ~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPR 337 (390)
T ss_pred cCHHHHHHHHHHHhhhCcc
Confidence 9999999999999977543
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=7.1e-21 Score=155.90 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=108.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
...+|+++|++++|||||+++|.+..+.....+.++.......+...+. ..+.+|||||++.|..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4679999999999999999999987766544444443433333333322 278899999999999988888999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-------hC--CcEEEeccCCCCC
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-------NG--LSFLETSAKSAHN 159 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~ 159 (199)
|+|+++... .+....+.... ..+.|+++++||+|+.+.. .......... ++ .+++++||++|+|
T Consensus 165 VVda~dgv~-~qT~e~i~~~~---~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVM-PQTIEAISHAK---AANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCC-HhHHHHHHHHH---HcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999886421 11122222222 3478899999999986421 1222222222 22 4699999999999
Q ss_pred HHHHHHHHHHH
Q 029103 160 VNELFYEIAKR 170 (199)
Q Consensus 160 v~~~~~~l~~~ 170 (199)
++++|++|...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998753
No 175
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.9e-22 Score=136.35 Aligned_cols=162 Identities=23% Similarity=0.297 Sum_probs=121.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 79 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~ 79 (199)
...+.|+|+|..++|||||+.++... +. ....++.+..... +.-....+.+||.+|++...++|..|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~-~~~~~~~l~~~ki~~tvgLnig~----i~v~~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTD-FSKAYGGLNPSKITPTVGLNIGT----IEVCNAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHH-HHhhhcCCCHHHeecccceeecc----eeeccceeEEEEcCChHHHHHHHHHH
Confidence 34788999999999999999987642 21 1122333322222 22225568899999999999999999
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHH-HhCCCCceEEEEEeCCCCcccccCCHHHH-H---HHHHHhCCcEEEecc
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQ-RQGNPNLIMFLVANKVDLEEKRKVKNEEG-E---LYAQENGLSFLETSA 154 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~---~~~~~~~~~~~~~s~ 154 (199)
|..++++|+++|+++++.++.....+..+. +....+.|+++.+||.|+.+.....+... . +...+..+++.++|+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 999999999999999999988876665544 44468999999999999976433222111 1 111234478999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 029103 155 KSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~~~~~ 174 (199)
.+|+|+++...|+...+.++
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999886
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=4.8e-21 Score=157.40 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
+.|+++|++++|||||+++|.+.. +.++....++.+.....+...+ ..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999998632 2333344455554444444444 78899999999999888888889999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC--HHHHHHHHHHh----CCcEEEeccCCCCCH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK--NEEGELYAQEN----GLSFLETSAKSAHNV 160 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~s~~~~~~v 160 (199)
+|+|++++. ..+..+.+..+.. .++| ++|++||+|+.+..... ..+...+.... +++++++|+++|+|+
T Consensus 79 LVVDa~~G~-~~qT~ehl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI 154 (581)
T TIGR00475 79 LVVDADEGV-MTQTGEHLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGI 154 (581)
T ss_pred EEEECCCCC-cHHHHHHHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCc
Confidence 999998731 1122222333332 2456 99999999997543221 22334444433 578999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 029103 161 NELFYEIAKRLAEVN 175 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (199)
+++++.|.+.+....
T Consensus 155 ~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 155 GELKKELKNLLESLD 169 (581)
T ss_pred hhHHHHHHHHHHhCC
Confidence 999999988876644
No 177
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-21 Score=134.09 Aligned_cols=171 Identities=32% Similarity=0.558 Sum_probs=150.3
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~ 80 (199)
|+.++......+++++|.-|.||||++++...+.|...+..+.+.......+.-+...+++..|||.|++.+..+...++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 66666667799999999999999999999999999999999999999888887777789999999999999999999999
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
-+....|++||++...++..+.+|...+...+ .++|+++++||.|..+.. .......+.+..++.|+++|++.+.+.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999987774 559999999999976533 234445566677899999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029103 161 NELFYEIAKRLAEV 174 (199)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (199)
..-|-|+.+.+.-.
T Consensus 158 ekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 158 ERPFLWLARKLTGD 171 (216)
T ss_pred ccchHHHhhhhcCC
Confidence 99999999988653
No 178
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.8e-21 Score=139.43 Aligned_cols=160 Identities=22% Similarity=0.210 Sum_probs=107.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC------------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
..++|+++|+.++|||||+++|........ .....+................+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 367999999999999999999997432110 11112222222222223556789999999999
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHh---
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN--- 145 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~--- 145 (199)
.|.......+..+|++|+|+|+.++-.. .....+..+... +.|+++++||+|+...+.. .......+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 9888777788999999999999865322 233444445444 6779999999999732211 111111232332
Q ss_pred ---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 146 ---GLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 146 ---~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
.++++++|+++|.|+.++++.|.+.+.
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988764
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=9.6e-21 Score=133.46 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=100.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-----------cc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----------AP 77 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-----------~~ 77 (199)
.++|+++|.+|+|||||+++|.+..... ...+..............+ ..+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999998764321 1122222222222333333 35779999997533110 12
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH-HHHHHHHHh----CCcEEEe
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE-EGELYAQEN----GLSFLET 152 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~----~~~~~~~ 152 (199)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+....... ....+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 245789999999999987654442 33333322 36789999999998754311111 122233333 3679999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 029103 153 SAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~ 170 (199)
|+++++|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 180
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=3.4e-20 Score=155.92 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=117.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc----------cccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APMY 79 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~----------~~~~ 79 (199)
.++|+++|+||+|||||+|+|.+... ......+.+.......+...+.++.+||+||+.++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 57899999999999999999987654 23445666666666666677788999999998766432 1123
Q ss_pred --ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103 80 --YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 80 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
...+|++++|+|.++.+.. ..+..++.+ .+.|+++++||.|+.+.... ....+.+.+..+++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2478999999999875432 234444444 36899999999998754444 44567788889999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029103 158 HNVNELFYEIAKRLA 172 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~ 172 (199)
+|++++++.+.+...
T Consensus 154 ~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 154 RGIEALKLAIDRHQA 168 (772)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999887653
No 181
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=1e-20 Score=134.53 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=95.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL 75 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~ 75 (199)
+....++|+|+|.+|+|||||+++|.+..+........+.+........+. .+.+||+||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 345688999999999999999999998754333344444443333333332 58899999953 22223
Q ss_pred cccccc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHhC--Cc
Q 029103 76 APMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LS 148 (199)
Q Consensus 76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~ 148 (199)
...+++ .++++++|+|.+++.+.... .++..+.. .+.|+++++||+|+.+.... ...+........+ .+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 334444 35799999999875433332 23333332 36889999999998643221 1222333333333 47
Q ss_pred EEEeccCCCCCHH
Q 029103 149 FLETSAKSAHNVN 161 (199)
Q Consensus 149 ~~~~s~~~~~~v~ 161 (199)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 182
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=2.7e-20 Score=134.65 Aligned_cols=117 Identities=19% Similarity=0.300 Sum_probs=86.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC-CEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVY 90 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~-d~~i~v~ 90 (199)
+|+++|++|||||||+++|..+.+.....+.. ................+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999887665544331 122221121123456789999999999988888888998 9999999
Q ss_pred ECCCH-HHHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCcc
Q 029103 91 DITSM-DSFERAKKWVQELQR---QGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 91 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~ 129 (199)
|.++. .++.....|+..+.. ...+++|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 667766655544332 2236899999999999854
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.2e-20 Score=130.94 Aligned_cols=151 Identities=20% Similarity=0.165 Sum_probs=101.7
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-------cccccCCCEE
Q 029103 15 LLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------PMYYRGAAAA 86 (199)
Q Consensus 15 v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-------~~~~~~~d~~ 86 (199)
++|++|+|||||++++.+..... .................. ....+.+||+||...+.... ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999998754432 111211112222222221 15678999999987654333 3478899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH---HHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++|+|..+........ +..... ..+.|+++++||.|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876555443 333332 358889999999998764433222 122333445678999999999999999
Q ss_pred HHHHHHH
Q 029103 164 FYEIAKR 170 (199)
Q Consensus 164 ~~~l~~~ 170 (199)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999875
No 184
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=139.07 Aligned_cols=165 Identities=16% Similarity=0.058 Sum_probs=115.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc--------cccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH--------SLAPMY 79 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~--------~~~~~~ 79 (199)
.+.--|+++|.|+||||||+|+|.+.+..- .++...+++.....-......++.|+||||..... ......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisI-vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEe-ecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 456679999999999999999999877543 33444444544555555568899999999965433 233455
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAH 158 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~ 158 (199)
+..+|++++|+|++++..- .....++.++. .+.|+++++||+|..............+..... ..++++||++|.
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 7899999999999864222 11233344443 467899999999987655421222233322222 468999999999
Q ss_pred CHHHHHHHHHHHHHhhCCC
Q 029103 159 NVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~~~~ 177 (199)
|++.+.+.+..++.+...-
T Consensus 159 n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred CHHHHHHHHHHhCCCCCCc
Confidence 9999999999999886544
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=1.5e-20 Score=156.32 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=110.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcccee--EEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--FFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
...+|+|+|++++|||||+++|....+........+.. .+.......+....+.||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 46799999999999999999998776654333333222 2333333344568899999999999999998899999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHH------HHHhC--CcEEEeccCCCC
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELY------AQENG--LSFLETSAKSAH 158 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~--~~~~~~s~~~~~ 158 (199)
|+|+|+++....+. ...+..+. ..+.|+++++||+|+..... ......+ ...++ ++++++||++|.
T Consensus 323 ILVVDA~dGv~~QT-~E~I~~~k---~~~iPiIVViNKiDl~~~~~--e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~ 396 (742)
T CHL00189 323 ILIIAADDGVKPQT-IEAINYIQ---AANVPIIVAINKIDKANANT--ERIKQQLAKYNLIPEKWGGDTPMIPISASQGT 396 (742)
T ss_pred EEEEECcCCCChhh-HHHHHHHH---hcCceEEEEEECCCccccCH--HHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence 99999987422222 12222222 35789999999999865321 1111111 12233 689999999999
Q ss_pred CHHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKRL 171 (199)
Q Consensus 159 ~v~~~~~~l~~~~ 171 (199)
|++++|++|....
T Consensus 397 GIdeLle~I~~l~ 409 (742)
T CHL00189 397 NIDKLLETILLLA 409 (742)
T ss_pred CHHHHHHhhhhhh
Confidence 9999999998765
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=1.9e-20 Score=156.84 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=107.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.....|+|+|+.++|||||+++|.+..+.......++.......+... +..+.||||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 357889999999999999999998766654333333323222233333 467899999999999999888899999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHH--HHHHHHHhC--CcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEE--GELYAQENG--LSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~--~~~~~~~~~--~~~~~~s~~~~~~v~ 161 (199)
+|||+++... .+....+.... ..+.|++|++||+|+.+... +.... ...+...++ ++++++||++|.|++
T Consensus 366 LVVdAddGv~-~qT~e~i~~a~---~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 366 LVVAADDGVM-PQTIEAINHAK---AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEECCCCCC-HhHHHHHHHHH---hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 9999987421 11112222222 34788999999999865321 10000 011122233 689999999999999
Q ss_pred HHHHHHHHH
Q 029103 162 ELFYEIAKR 170 (199)
Q Consensus 162 ~~~~~l~~~ 170 (199)
++|++|...
T Consensus 442 eLle~I~~~ 450 (787)
T PRK05306 442 ELLEAILLQ 450 (787)
T ss_pred HHHHhhhhh
Confidence 999998764
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=2.9e-20 Score=153.03 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=113.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC-----------CcCccceeEEEEEEEe-----CCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF-----------QESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~-----------~~~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~ 70 (199)
.-.+|+|+|+.++|||||+++|+... .... .+...+.+.......+ ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34689999999999999999998631 1110 0112233333322222 4457899999999999
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc--
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-- 148 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 148 (199)
.|...+..++..+|++|+|+|+++....+....|.... ..+.|+++++||+|+.+.. .......+....++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence 99888888999999999999999865444444444322 2467899999999986432 122234444445554
Q ss_pred -EEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 149 -FLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 149 -~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
++++||++|.|+.+++++|.+.+...
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999887653
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=1.5e-20 Score=150.66 Aligned_cols=152 Identities=21% Similarity=0.202 Sum_probs=103.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--------cccccccccccCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYRGA 83 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~~~~~ 83 (199)
+|+++|.+|||||||+|+|.+.... ......+.+...........+..+.+|||||.. .+......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA-IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc-eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 5899999999999999999976532 122223333322222222234568999999963 2334455678999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNE 162 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 162 (199)
|++++|+|..++.+... ..+...+.. .+.|+++|+||+|+.+.... ..++ ..++. .++++||++|.|+.+
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChHH
Confidence 99999999987533322 223333333 36789999999998653321 2222 34565 799999999999999
Q ss_pred HHHHHHHHHHh
Q 029103 163 LFYEIAKRLAE 173 (199)
Q Consensus 163 ~~~~l~~~~~~ 173 (199)
+++++.+.+.+
T Consensus 151 ll~~i~~~l~~ 161 (429)
T TIGR03594 151 LLDAILELLPE 161 (429)
T ss_pred HHHHHHHhcCc
Confidence 99999988755
No 189
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=123.73 Aligned_cols=161 Identities=20% Similarity=0.236 Sum_probs=120.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+...+++|+++|--++|||||+..|.+... ....++.++....... ...+.+++||++|+..-+..|.+||.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccce
Confidence 346799999999999999999999985443 3345666555443332 456889999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHH-HhCCCCceEEEEEeCCCCcccccCCHHHHH---HHHHHhCCcEEEeccCCCCCHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQ-RQGNPNLIMFLVANKVDLEEKRKVKNEEGE---LYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||+|.+|...++++...+-++. .......|++|..||.|+..+...++.... ...+..-+.+..+|+..++|+.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 999999999888888865555544 444688999999999998654333221111 1111223467899999999999
Q ss_pred HHHHHHHHH
Q 029103 162 ELFYEIAKR 170 (199)
Q Consensus 162 ~~~~~l~~~ 170 (199)
+-.+|+...
T Consensus 169 dg~~wv~sn 177 (185)
T KOG0074|consen 169 DGSDWVQSN 177 (185)
T ss_pred CcchhhhcC
Confidence 998887653
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=3.9e-20 Score=152.18 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=105.4
Q ss_pred cCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc------ccccc--cCCCEEEE
Q 029103 17 GDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL------APMYY--RGAAAAVV 88 (199)
Q Consensus 17 G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~------~~~~~--~~~d~~i~ 88 (199)
|++|+|||||+|+|.+........+..+.+........++ ..+.+||+||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765433344444444444444443 46789999999876543 23333 37899999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|+|.++.+. ...+..++.+ .+.|+++++||+|+.+..... ...+.+.+..+++++++|+++|+|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 1233333332 478999999999987654443 346778888899999999999999999999998
Q ss_pred HHH
Q 029103 169 KRL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5.3e-20 Score=147.70 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=106.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-----------cc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-----------AP 77 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-----------~~ 77 (199)
..++|+++|.+|+|||||+++|++..... .....+++.......+...+..+.+|||||....... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 47999999999999999999999754211 1222333443333333333456789999996432211 12
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH----HHhCCcEEEec
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA----QENGLSFLETS 153 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~s 153 (199)
.++..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+.... ......+. ....++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEe
Confidence 357889999999999987655443 33344433 36789999999998743211 11111222 22357899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
|+++.|+.++|+.+.+.+....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999988776543
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=6.9e-20 Score=147.04 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--------cccccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--------YHSLAPMYYR 81 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--------~~~~~~~~~~ 81 (199)
.+|+++|.+|||||||+++|.+.... ....+..+.+.........+ ..+.+|||||+.. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 47999999999999999999976532 11222233333333444443 7789999999876 1222345678
Q ss_pred CCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCC
Q 029103 82 GAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAH 158 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~ 158 (199)
.+|++++|+|+.++.+.. .+..|+. . .+.|+++++||+|..+. .....++ ...++. ++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753322 2233333 2 27889999999996541 1222333 244553 8999999999
Q ss_pred CHHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKRL 171 (199)
Q Consensus 159 ~v~~~~~~l~~~~ 171 (199)
|+.++|+.|....
T Consensus 149 gv~~l~~~I~~~~ 161 (435)
T PRK00093 149 GIGDLLDAILEEL 161 (435)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998743
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1e-19 Score=153.33 Aligned_cols=156 Identities=23% Similarity=0.189 Sum_probs=105.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc--------cccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--------HSLAPMYY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~--------~~~~~~~~ 80 (199)
...+|+|+|.++||||||+|+|++.... ......+++...........+..+.+|||||.+.. ......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3578999999999999999999976532 12334444444444433333457889999997632 22334567
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
..+|++++|+|+++...... ..|...+.. .+.|+++|+||+|+.... ......+....+ ..+++||++|.|+
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~GI 424 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRGV 424 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCCc
Confidence 89999999999986422111 244444443 478999999999985421 111222222222 4679999999999
Q ss_pred HHHHHHHHHHHHh
Q 029103 161 NELFYEIAKRLAE 173 (199)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (199)
.++|++|.+.+..
T Consensus 425 ~eLl~~i~~~l~~ 437 (712)
T PRK09518 425 GDLLDEALDSLKV 437 (712)
T ss_pred hHHHHHHHHhccc
Confidence 9999999998854
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=6.5e-20 Score=146.53 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=104.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHh--CCCCC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD---------------------------FQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (199)
....++|+++|+.++|||||+++|+. +.... ......+++.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45689999999999999999999985 21111 01112244444445556666
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCccccc---
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER--AKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--- 132 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--- 132 (199)
...+.+||+||++.|.......+..+|++++|+|++++++... ...++...... ...|++|++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 7889999999999887666667789999999999998743211 11222222222 2357899999999864211
Q ss_pred -CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 029103 133 -VKNEEGELYAQENG-----LSFLETSAKSAHNVNELF 164 (199)
Q Consensus 133 -~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~ 164 (199)
....+...+.+..+ ++++++||++|+|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11234445555554 579999999999998744
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=122.11 Aligned_cols=160 Identities=22% Similarity=0.302 Sum_probs=115.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-----CcCccc---eeEEEEEEEeC-CeEEEEEEEeCCCcccccccc
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-----QESTIG---AAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLA 76 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-----~~~~~~---~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~ 76 (199)
....+.||+|.|+.++||||++++++....... ..+..+ ++...-...+. +....++++++|||+++.-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 445789999999999999999999987543111 011111 22222222222 233678999999999999999
Q ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh--CCcEEEecc
Q 029103 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN--GLSFLETSA 154 (199)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~ 154 (199)
..+.+++.++|+++|.+++..+ .....+..+....+ +|++|..||.|+.+.+ +.+...+..... ..+++..++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999988777 33455555544422 8999999999998754 344444443333 789999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAKR 170 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (199)
.++++..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999888766
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=8.7e-20 Score=145.83 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=104.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD---------------------------FQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (199)
..+.++|+++|++++|||||+++|+...- .. ..+...+++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35689999999999999999999984211 00 01123445555555666667
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK---- 132 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---- 132 (199)
.+.+.+|||||++.|.......+..+|++++|+|+++.... .....++...... ...|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 78899999999988876655567889999999999873112 2222233333322 2346899999999864211
Q ss_pred CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 029103 133 VKNEEGELYAQENG-----LSFLETSAKSAHNVNELF 164 (199)
Q Consensus 133 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~ 164 (199)
....+...+....+ ++++++||++|+|+.+..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11123344444444 569999999999998754
No 197
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=7.5e-20 Score=145.09 Aligned_cols=163 Identities=18% Similarity=0.137 Sum_probs=105.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC---CCCcCccceeEEE------------------EEEEeCC------eEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFT------------------QVLSLNE------VTIK 60 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~---~~~~~~~~~~~~~------------------~~~~~~~------~~~~ 60 (199)
+.+++|+++|++++|||||+++|.+.... ++..+..+..... ....++. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56899999999999999999999753221 1111111111100 0000011 1467
Q ss_pred EEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--HHHH
Q 029103 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK--NEEG 138 (199)
Q Consensus 61 v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~ 138 (199)
+.+||+||+++|...+......+|++++|+|++++....+..+.+..+... ...|+++++||+|+.+..... ..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999887777788899999999998643122333333333322 234689999999987532211 1222
Q ss_pred HHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 139 ELYAQEN---GLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 139 ~~~~~~~---~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
..+.... +++++++|+++|+|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2333222 578999999999999999999988764
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=140.67 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=116.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------ccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMYY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~~ 80 (199)
..++|+++|.|+||||||+|.|++.. ..-...-.++++...+..++-.++.+.+.||+|.++.... ....+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d-~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRD-RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCC-ceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 47899999999999999999999643 3445566677777777777777788899999998755433 23457
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
..+|.+++|+|.+.+.+-... ..+. ....+.|+++|.||.|+......... ....+.+++.+|+++++|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence 899999999999986322222 2222 23567899999999999875442211 2223457899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029103 161 NELFYEIAKRLAEV 174 (199)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (199)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998776
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=3.7e-19 Score=145.68 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC----ccceeEEEEEE------------EeCCeEEEEEEEeCCCccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~v~l~d~~g~~~~~ 73 (199)
..-|+++|++++|||||+++|.+..+...... .++........ .+......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34689999999999999999998765432221 11211111100 000111238899999999999
Q ss_pred ccccccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC----C--------HHH-
Q 029103 74 SLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----K--------NEE- 137 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~--------~~~- 137 (199)
.++..++..+|++++|+|+++ +.+++.+ ..+.. .+.|+++++||+|+.+.+.. . ...
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 988889999999999999987 3443332 22222 36789999999998642210 0 000
Q ss_pred -----------HHHHHH--------------HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 138 -----------GELYAQ--------------ENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 138 -----------~~~~~~--------------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
...+.. ....+++++||++|+|+++++.+|..+..+
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001111 013579999999999999999998765544
No 200
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=2.2e-19 Score=142.40 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC---CCCcCccceeEEEE--EE----------------EeC------C
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQ--VL----------------SLN------E 56 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~---~~~~~~~~~~~~~~--~~----------------~~~------~ 56 (199)
++...+.++|+++|+.++|||||+.+|.+.... ++.....+...... .. ..+ .
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 455677899999999999999999999653111 11112122111100 00 000 0
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC--
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-- 134 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 134 (199)
....+.+||+||++.|..........+|++++|+|++++.........+..+... ...|+++++||+|+.+.....
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHH
Confidence 1357899999999888765555566789999999998643111112222223222 224689999999987533211
Q ss_pred HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 135 NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
..+...+... .+.+++++|+++|+|++++++.|...+..
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1222333322 24789999999999999999999887643
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=1.8e-19 Score=147.95 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCC------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA 76 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~ 76 (199)
.+|+|+|+.++|||||+++|+.. .+... .....+++.......+.+.+.++.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999862 22211 11223455555556666677899999999999998888
Q ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHH-------HHhCCc
Q 029103 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYA-------QENGLS 148 (199)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~~ 148 (199)
..++..+|++++|+|+.+. ...+...|+..+... ++|+++++||+|+.+.+... ..+...+. ....++
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 8899999999999999863 244455666666543 67889999999986533211 12222222 223578
Q ss_pred EEEeccCCCC----------CHHHHHHHHHHHHHhh
Q 029103 149 FLETSAKSAH----------NVNELFYEIAKRLAEV 174 (199)
Q Consensus 149 ~~~~s~~~~~----------~v~~~~~~l~~~~~~~ 174 (199)
++.+|+++|. |+..+|+.|.+.+...
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999995 7999999998887643
No 202
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=2.7e-18 Score=126.63 Aligned_cols=151 Identities=22% Similarity=0.184 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------cccccccCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRGAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~~~~~~~~~d 84 (199)
+|+++|++|+|||||+++|.+........+..+.+.....+... ...+++||+||..+... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999765332222222222223333333 46788999999754321 1234688999
Q ss_pred EEEEEEECCCHH-HHHHHHHHHHH-----------------------------------------HHHhC----------
Q 029103 85 AAVVVYDITSMD-SFERAKKWVQE-----------------------------------------LQRQG---------- 112 (199)
Q Consensus 85 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~~---------- 112 (199)
++++|+|++++. ..+.+...+.. +.++.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 33333222211 00010
Q ss_pred --------------CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103 113 --------------NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 113 --------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
....|+++|+||+|+.+. .+...++. ...++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 123689999999998542 23334443 34689999999999999999998866
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=2.3e-19 Score=139.21 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---------cccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYYR 81 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---------~~~~~~~~ 81 (199)
..|+|+|.|+||||||+|+|.+.... ......++++..........+..|.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A-IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA-IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee-EeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 57999999999999999999976543 234445555555555555556669999999976433 12345688
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
.+|++|||+|....-+-.+ ....+.++ ..++|+++|+||+|-.. .+....++....-..++.+||.+|.|+.
T Consensus 83 eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi~ 154 (444)
T COG1160 83 EADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGIG 154 (444)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCHH
Confidence 9999999999876433222 23333333 24688999999999652 2333444544444569999999999999
Q ss_pred HHHHHHHHHHH
Q 029103 162 ELFYEIAKRLA 172 (199)
Q Consensus 162 ~~~~~l~~~~~ 172 (199)
++++.++..+.
T Consensus 155 dLld~v~~~l~ 165 (444)
T COG1160 155 DLLDAVLELLP 165 (444)
T ss_pred HHHHHHHhhcC
Confidence 99999999974
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=5.6e-19 Score=148.83 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=107.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------ccccc-c
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLA-P 77 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~-~ 77 (199)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++. .+.+|||||..+ |..+. .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 589999999999999999999987532 122222333333333444443 466999999642 11111 2
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hCCcEEEec
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NGLSFLETS 153 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s 153 (199)
..+..+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+.... ......+... ...+++++|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~-~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRR-QRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHH-HHHHHHHHHhccCCCCCCEEEEE
Confidence 3468899999999999887666643 4444433 46899999999998653221 1111112111 134679999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
|++|.|++++|+.+.+.+.+...+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~~~~~ 626 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALESWDQR 626 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999988765444
No 205
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.5e-20 Score=121.68 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=118.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
.+.+|+++|.-|+||++++.++.-+.... ..++++... .++...+.++++||.+|+-+....|+.|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 68999999999999999998876544322 334444332 2334477889999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc---cCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 89 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|+|.+|.+...... .++..+.+....+..+++++||.|..... +........-.+..-+.++..||.+|+|++...
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 99999988775554 44444544445667788999999985421 111111122222233679999999999999999
Q ss_pred HHHHHHHHhh
Q 029103 165 YEIAKRLAEV 174 (199)
Q Consensus 165 ~~l~~~~~~~ 174 (199)
+||.+-+.++
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999988653
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.1e-18 Score=143.29 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh--CCCCCC------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK--GQFFDF------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~ 75 (199)
-.+|+|+|+.++|||||+++|+. +.+... .....+.++......+....+++.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999996 332221 1234566666777777778899999999999999999
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHH-------HHhCC
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYA-------QENGL 147 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~ 147 (199)
+..+++.+|++++|+|+++... .+...++..... .+.|.++++||+|+....... ..+...+. ....+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 9999999999999999987432 223334443333 367889999999987533211 11222222 12347
Q ss_pred cEEEeccCCCC----------CHHHHHHHHHHHHHhh
Q 029103 148 SFLETSAKSAH----------NVNELFYEIAKRLAEV 174 (199)
Q Consensus 148 ~~~~~s~~~~~----------~v~~~~~~l~~~~~~~ 174 (199)
+++.+|+++|. ++..+++.|++.+...
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 89999999998 5888888888877543
No 207
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=8.8e-19 Score=122.81 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=97.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------cccccccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAPMYYR 81 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~~~~~~ 81 (199)
.|+++|.+|+|||||++.+.++.......+..+.+.......... .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996555554555555444443333333 788999999533 2233333443
Q ss_pred ---CCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHH--HHhCCcEEEe
Q 029103 82 ---GAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYA--QENGLSFLET 152 (199)
Q Consensus 82 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~--~~~~~~~~~~ 152 (199)
+.+++++++|..+... ...+..|+. .. +.|+++++||+|+.+...... ....... .....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 4578889999876522 122233332 22 578999999999854322111 1111112 1344678999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 029103 153 SAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~ 171 (199)
|++++.++.+++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999998753
No 208
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.6e-18 Score=124.38 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~ 75 (199)
.++|+++|+.++|||||+++|+..... ...+...+++.......+.....++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999863100 001112344444555556666778899999999888777
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC---HHHHHHHHHHh-----C
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK---NEEGELYAQEN-----G 146 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-----~ 146 (199)
....+..+|++++|+|+...-. .....++..+... +.| +++++||+|+....... ..+...+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7777889999999999986422 2233444444443 455 67889999986322211 12233333333 3
Q ss_pred CcEEEeccCCCCCH
Q 029103 147 LSFLETSAKSAHNV 160 (199)
Q Consensus 147 ~~~~~~s~~~~~~v 160 (199)
++++++|+++|.++
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 67999999999885
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.9e-19 Score=129.23 Aligned_cols=149 Identities=21% Similarity=0.191 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-----------------------------CcCccceeEEEEEEEeCCeEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDF-----------------------------QESTIGAAFFTQVLSLNEVTIKFD 62 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~v~ 62 (199)
+|+|+|++|+|||||+++|+...-.-. .....+++.......+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999976321100 001123333333344445566788
Q ss_pred EEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC----CHHHH
Q 029103 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV----KNEEG 138 (199)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~ 138 (199)
+|||||++.|...+...+..+|++++|+|++++..- ........+... ...++++++||+|+.+.... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 999999988766666678899999999999875321 112222222222 22457788999998642210 11233
Q ss_pred HHHHHHhC---CcEEEeccCCCCCHHHH
Q 029103 139 ELYAQENG---LSFLETSAKSAHNVNEL 163 (199)
Q Consensus 139 ~~~~~~~~---~~~~~~s~~~~~~v~~~ 163 (199)
..+....+ .+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34444455 35899999999998753
No 210
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-18 Score=128.21 Aligned_cols=172 Identities=14% Similarity=0.144 Sum_probs=116.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc------------
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------------ 72 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~------------ 72 (199)
+..++.+.|+|+|+|+||||||.|.+.+.+... .+....+++......+.....++.|+||||.-.-
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcccc-ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 345689999999999999999999999877665 3444556666667777778889999999994211
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc-------------cCCH---H
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR-------------KVKN---E 136 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~~~~---~ 136 (199)
-...+..+..+|.+++++|+++....-. ...+..+..+ .++|.++++||.|..... .... +
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 1233456788999999999996422111 1222233333 467789999999974311 1111 1
Q ss_pred HHHHHHHHh---------CC----cEEEeccCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 029103 137 EGELYAQEN---------GL----SFLETSAKSAHNVNELFYEIAKRLAEVNPSRQT 180 (199)
Q Consensus 137 ~~~~~~~~~---------~~----~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~~~~ 180 (199)
-...+.... ++ .+|.+||+.|+|++++-++|...+....+....
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a 279 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPA 279 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCc
Confidence 111121111 12 389999999999999999999888776655433
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=2.3e-18 Score=142.15 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=104.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
-|+++|+.++|||||+++|.+.. +.++....++++.....+... .+..+.+||+||++.|...+...+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58999999999999999998633 222233333333322222222 23458899999999997777777889999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCC--HHHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVK--NEEGELYAQENG---LSFLETSAKSAHNVNE 162 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 162 (199)
|+|+++.- ..+..+.+..+... +.| ++||+||+|+.+..... ..+...+....+ .+++++|+++|+|+++
T Consensus 81 VVda~eg~-~~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGV-MAQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99988631 22323333333332 344 57999999987533221 122333333333 6899999999999999
Q ss_pred HHHHHHHHHHh
Q 029103 163 LFYEIAKRLAE 173 (199)
Q Consensus 163 ~~~~l~~~~~~ 173 (199)
+++.|.+....
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999876544
No 212
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.79 E-value=6.5e-21 Score=130.38 Aligned_cols=170 Identities=32% Similarity=0.567 Sum_probs=142.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe-EEEEEEEeCCCcccccccccccccCCCEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..-++++|+|..|+|||+++.++....+...+..+++.++......-++. .++++|||+.|++++..+...+++.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 34689999999999999999999998888888888888877666655443 46789999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCcccccCC-HHHHHHHHHHhCC-cEEEeccCCCCCH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG----NPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGL-SFLETSAKSAHNV 160 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~s~~~~~~v 160 (199)
++|||+++...++.+..|.+.+.... ....|+++..||+|........ ......+.+++|. ..+++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999999998876533 2456678889999986533332 3556788888886 4899999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 029103 161 NELFYEIAKRLAEVNPS 177 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~~~ 177 (199)
+|.-..|++++..+..+
T Consensus 183 ~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 183 PEAQRELVEKILVNDEQ 199 (229)
T ss_pred hHHHHHHHHHHHhhccC
Confidence 99999999999887643
No 213
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=5e-18 Score=131.85 Aligned_cols=168 Identities=19% Similarity=0.172 Sum_probs=118.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-----------c
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-----------P 77 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-----------~ 77 (199)
..++|+|+|.|++|||||+|+|++.. ........++++......+.....++.++||+|...-.... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgee-R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEE-RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCc-eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 46999999999999999999999754 23345566677777666666556677899999965322211 2
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH-HHHHH----hCCcEEEe
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE-LYAQE----NGLSFLET 152 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~~ 152 (199)
..+..+|++++|+|++.+.+-+.. +....+.+ .+.+++|++||.|+.+.+.......+ .+... ...+++++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 346789999999999987655553 44444443 47779999999998765333333322 22222 23578999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCCCCC
Q 029103 153 SAKSAHNVNELFYEIAKRLAEVNPSRQTG 181 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~~~~~~~~~~~ 181 (199)
||+++.++.++|+.+.+..........++
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~~~ri~Ts 360 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECATRRISTS 360 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHhccccCHH
Confidence 99999999999999988877665554433
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=5.2e-18 Score=139.39 Aligned_cols=157 Identities=23% Similarity=0.211 Sum_probs=100.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC----ccceeEEEEEEE--eCCeE-----E-----EEEEEeCCCcccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----TIGAAFFTQVLS--LNEVT-----I-----KFDIWDTAGQERY 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~v~l~d~~g~~~~ 72 (199)
....|+++|++++|||||+++|.+......... ..+......... ..+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 455799999999999999999986543322221 111111111000 00111 1 2689999999999
Q ss_pred cccccccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC----H--------HH
Q 029103 73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----N--------EE 137 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~--------~~ 137 (199)
..++...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...+... . ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888899999999999987 44444432 2222 478899999999985321100 0 00
Q ss_pred -----------HHHHHHH---------------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 138 -----------GELYAQE---------------NGLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 138 -----------~~~~~~~---------------~~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
....... ..++++++|+++|+|++++++.+...+.
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 0001111 1357899999999999999998876543
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=3.6e-18 Score=135.06 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=106.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|+.++|||||+++|++.... ...+...+++.......+.....++.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 356899999999999999999999863110 011123344444555556556678899999999988
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHhC--
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQENG-- 146 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~-- 146 (199)
.......+..+|++++|+|+++... .+...++..+... +.| +++++||+|+.+..+... .+...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 7666666788999999999986421 2223444444433 566 578899999874322211 23334434443
Q ss_pred ---CcEEEeccCCCC--------CHHHHHHHHHHHHH
Q 029103 147 ---LSFLETSAKSAH--------NVNELFYEIAKRLA 172 (199)
Q Consensus 147 ---~~~~~~s~~~~~--------~v~~~~~~l~~~~~ 172 (199)
++++++|+++|. ++.++++.|.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 46666666666554
No 216
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=2.7e-18 Score=126.80 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--------------C--CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFF--------------D--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~ 75 (199)
+|+++|++|+|||||+++|+...-. + ......+.+.......+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863110 0 00112233344455555666788999999999998888
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
+..++..+|++++|+|+++.... ....++..+.. .+.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88899999999999999876432 33455555543 367899999999985
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=8.5e-18 Score=133.00 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=106.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--------------CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--------------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|++++|||||+++|++... ....+...+++.......+.....++.|+||||++.|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 35689999999999999999999986210 0011122344444445555556678899999999888
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccCC---HHHHHHHHHHhC--
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQENG-- 146 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 146 (199)
.......+..+|++++|+|+.+.. ..+..+++..+... ++|.+ +++||+|+.+..+.. ..+...+...++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 766666778899999999998642 22233444444433 56655 579999986422211 123344444433
Q ss_pred ---CcEEEeccCCCC----------CHHHHHHHHHHHHH
Q 029103 147 ---LSFLETSAKSAH----------NVNELFYEIAKRLA 172 (199)
Q Consensus 147 ---~~~~~~s~~~~~----------~v~~~~~~l~~~~~ 172 (199)
++++++|++++. ++.++++.|...+.
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 678999999984 56677776666543
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=3.5e-18 Score=124.72 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCC-----------------cCccceeEEEEEEEe-----CCeEEEEEEEeCCCc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------------ESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQ 69 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~ 69 (199)
+|+|+|+.|+|||||+++|+........ ....+.+.......+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 011112221112211 345688999999999
Q ss_pred ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
..|......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999987654432 344444332 358899999999975
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=1.1e-18 Score=127.77 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=94.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--C---------------------------CCCcCccceeEEEEEEEeCCeEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQF--F---------------------------DFQESTIGAAFFTQVLSLNEVTIKFD 62 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~ 62 (199)
+|+++|++++|||||+.+|+...- . .......+++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999964210 0 00111223344444455555677899
Q ss_pred EEeCCCcccccccccccccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---c-
Q 029103 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD------SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---K- 132 (199)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~- 132 (199)
+||+||+..|...+...+..+|++++|+|++++. ...+....+...... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 9999999877766666678899999999998742 111222222222222 236789999999987321 0
Q ss_pred CC--HHHHHHHHHHh-----CCcEEEeccCCCCCHH
Q 029103 133 VK--NEEGELYAQEN-----GLSFLETSAKSAHNVN 161 (199)
Q Consensus 133 ~~--~~~~~~~~~~~-----~~~~~~~s~~~~~~v~ 161 (199)
.. ......+.... +++++++||++|+|+.
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 00 11122223333 3579999999999976
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.4e-18 Score=137.20 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------cccccc--c
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY--R 81 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~~--~ 81 (199)
..+|+++|+|++|||||+|+|++.+.. .....+++...++..+...+.+++++|.||.-+... ..+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~--VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK--VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce--ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 467999999999999999999986543 344456666666666666666688999999643322 223333 4
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+.|+++-|+|+++.+.--+ +--++.+. +.|+++++|++|.....- -....+.+.+..|+|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLy---ltlQLlE~---g~p~ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLY---LTLQLLEL---GIPMILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHH---HHHHHHHc---CCCeEEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 5699999999988643222 22223333 777999999999865433 3666788889999999999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 029103 162 ELFYEIAKRLAEVN 175 (199)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (199)
++...+.+....+.
T Consensus 154 ~l~~~i~~~~~~~~ 167 (653)
T COG0370 154 ELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHhccccc
Confidence 99999887766544
No 221
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=123.72 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----ccccc---ccCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----LAPMY---YRGA 83 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----~~~~~---~~~~ 83 (199)
..|.++|.|++|||||+++|+..+..-......+......+...++ ..++.+-|+||.-+-.. +-..| +..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4578999999999999999998765322222222222222333332 33489999999643332 22333 5678
Q ss_pred CEEEEEEECCCH---HHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCC
Q 029103 84 AAAVVVYDITSM---DSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSA 157 (199)
Q Consensus 84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 157 (199)
+.++||+|++.+ ..+++++.+..++..+. ....|.+||+||+|+++.. ......+++...-+ ++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999988 77777777766665543 4788999999999986432 22245566655544 899999999
Q ss_pred CCHHHHHHHHHHH
Q 029103 158 HNVNELFYEIAKR 170 (199)
Q Consensus 158 ~~v~~~~~~l~~~ 170 (199)
+++.++++.|-+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999877553
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=6.9e-18 Score=133.56 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=97.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--------------CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--------------FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|+.++|||||+++|++... ....+...+++.......+.....++.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45689999999999999999999974200 0011122344444455556666678999999999988
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccCC---HHHHHHHHHHhC--
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQENG-- 146 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 146 (199)
..........+|++++|+|+.+.-. .+..+.+..+... +.|.+ +++||+|+.+..+.. ..+...+...++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7666556678899999999986321 2223344444333 45555 689999987533211 123444555544
Q ss_pred ---CcEEEeccCCCC
Q 029103 147 ---LSFLETSAKSAH 158 (199)
Q Consensus 147 ---~~~~~~s~~~~~ 158 (199)
++++++|++++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999874
No 223
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=127.15 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=118.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--ccccccc------cc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPM------YY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--~~~~~~~------~~ 80 (199)
.-..|.++|-.++|||||+|+|.+........-..+.+...+.+.+.+ +..+.+.||.|.-. ...+... -.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 467899999999999999999997655444444445555666666655 55788999999421 1112122 25
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
..+|+++.|+|+++|+..+.+..-...+.+.....+|+++++||+|+..... ....+....+ ..+.+||++|+|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCH
Confidence 7899999999999998878877777777777677899999999999765433 1111111122 5899999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 029103 161 NELFYEIAKRLAEVNP 176 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (199)
+.+.+.|.+.+.....
T Consensus 345 ~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 345 DLLRERIIELLSGLRT 360 (411)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999999886543
No 224
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=2.2e-18 Score=115.63 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc----ccccccccccccCCCEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ----ERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~----~~~~~~~~~~~~~~d~~i 87 (199)
||+++|+.|+|||||+++|.+.... +..++.+. +.=.++||||. ..+....-....++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999875432 23333211 12235799994 223333334457899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~ 166 (199)
++.|++++.+.-.. . +... -+.|++=|+||+|+..... ....+..+.+..|+ .+|.+|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~pP-~----fa~~--f~~pvIGVITK~Dl~~~~~-~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFPP-G----FASM--FNKPVIGVITKIDLPSDDA-NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCCc-h----hhcc--cCCCEEEEEECccCccchh-hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 99999987543221 1 1111 2578999999999983222 34455566666665 4799999999999999998
Q ss_pred HH
Q 029103 167 IA 168 (199)
Q Consensus 167 l~ 168 (199)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=1.8e-17 Score=121.31 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc-----------------------cceeEEEE-------------EEEeC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQEST-----------------------IGAAFFTQ-------------VLSLN 55 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~-----------------------~~~~~~~~-------------~~~~~ 55 (199)
||+++|+.++|||||+++|..+.+.+..... .+.+.... ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999975553311100 00110000 01112
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 56 ~~~~~v~l~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
.....+.++|+||++.|.......+. .+|++++|+|+..+.. .....++..+... ++|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 23457899999999988654443343 6899999999876432 2234444544443 5789999999998643322
Q ss_pred CHHHHHHHHHHh-----------------------------CCcEEEeccCCCCCHHHHHHHHHH
Q 029103 134 KNEEGELYAQEN-----------------------------GLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 134 ~~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
. .....+.... ..+++.+|+.+|+|+++++..|..
T Consensus 157 ~-~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 Q-ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred H-HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 1111121111 248999999999999999987643
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=1.8e-17 Score=131.72 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=100.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|++++|||||+++|++.... ...+...+++.......+.....++.++||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 357899999999999999999999974110 111222344444444555556678889999999888
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHhC--
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQENG-- 146 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~-- 146 (199)
.......+..+|++++|+|+.+.. ..+....+..+... ++| +++++||.|+.+..+..+ .+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 776677788999999999998642 22333444444433 456 678899999975332111 23333333333
Q ss_pred ---CcEEEeccCCCCC
Q 029103 147 ---LSFLETSAKSAHN 159 (199)
Q Consensus 147 ---~~~~~~s~~~~~~ 159 (199)
++++++|+.+|++
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 6799999999874
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=4e-17 Score=114.45 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=109.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------cccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAPM 78 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~~~~ 78 (199)
....|+++|.++||||||+|+|++.+-....+.++|.+.....+..++. +.++|.||.. ....+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987766667888888888888877765 6699999932 22233334
Q ss_pred cccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH---HHHHHHHhCCc--EE
Q 029103 79 YYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE---GELYAQENGLS--FL 150 (199)
Q Consensus 79 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~--~~ 150 (199)
|+.. ..++++++|+..+-.-.+ +..++-+. ..++|++|++||.|.....+..... ...+....... ++
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~---~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~ 175 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLD-REMIEFLL---ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVV 175 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHH-HHHHHHHH---HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEE
Confidence 4433 468888999875432212 13333333 2488899999999987654432211 11222222233 78
Q ss_pred EeccCCCCCHHHHHHHHHHHHHh
Q 029103 151 ETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
.+|+..+.|++++...|.+.+..
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEecccccCHHHHHHHHHHHhhc
Confidence 99999999999999999988765
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=1.7e-17 Score=121.14 Aligned_cols=168 Identities=18% Similarity=0.273 Sum_probs=105.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCccccccc-----ccccccCCCE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSL-----APMYYRGAAA 85 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~-----~~~~~~~~d~ 85 (199)
||+++|++||||||+.+.+..+.. +......+.+.......+ ....+.+.+||+||+..+... ....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999999985543 323333333333333333 244568999999999765543 4667899999
Q ss_pred EEEEEECCCHHHHHHH---HHHHHHHHHhCCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHhC---CcEEEec
Q 029103 86 AVVVYDITSMDSFERA---KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENG---LSFLETS 153 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~---~~~~~~s 153 (199)
+|||+|+.+.+..+.+ ...+..+.+. .+++.+.|+++|+|+....... .....+.....+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999999844433443 3444444444 6889999999999985422111 111222333344 7799999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCCCCCC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVNPSRQTGM 182 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 182 (199)
..+ +.+-+.|..|++.+..+.+.-+..+
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~le~~L 186 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTLENLL 186 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 998 7999999999999887655544443
No 229
>PRK00049 elongation factor Tu; Reviewed
Probab=99.75 E-value=4.3e-17 Score=128.97 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=104.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|+.++|||||+++|++.... ...+...+++.......+.....++.++||||+..|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 367899999999999999999999863110 011122344444445555556678899999999888
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCcccccCC---HHHHHHHHHHh---
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF-LVANKVDLEEKRKVK---NEEGELYAQEN--- 145 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~--- 145 (199)
.......+..+|++++|+|+.++. ......++..+... +.|.+ +++||+|+.+..... ..+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 766666788999999999998642 22333444444433 56765 579999986422211 11222333322
Q ss_pred --CCcEEEeccCCCC----------CHHHHHHHHHHH
Q 029103 146 --GLSFLETSAKSAH----------NVNELFYEIAKR 170 (199)
Q Consensus 146 --~~~~~~~s~~~~~----------~v~~~~~~l~~~ 170 (199)
+++++++|++++. ++..+++.|...
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3689999999875 345555555544
No 230
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=8e-17 Score=128.70 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=103.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhC------CC-------C-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG------QF-------F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~------~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|+.++|||||+++|.+. .. . ...+...+++.......+.....++.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 456899999999999999999999732 10 0 011222444555555666666778999999999888
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCHH---HHHHHHHHh---
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKNE---EGELYAQEN--- 145 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~---~~~~~~~~~--- 145 (199)
.......+..+|++++|+|+.+.. ..+....+..+... ++| +++++||+|+.+..+.... +...+....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 666555667899999999987642 22233444444433 567 4678999998753221111 122222221
Q ss_pred --CCcEEEeccC---CCCC-------HHHHHHHHHHHHH
Q 029103 146 --GLSFLETSAK---SAHN-------VNELFYEIAKRLA 172 (199)
Q Consensus 146 --~~~~~~~s~~---~~~~-------v~~~~~~l~~~~~ 172 (199)
.++++++|+. ++++ +.++++.|.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888876 4444 5666666665543
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=5.1e-17 Score=121.14 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc-cc----ccc----ccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RY----HSL----APMYY 80 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-~~----~~~----~~~~~ 80 (199)
...|+|.|.|+||||||++.+++.+..- .+-..++-......+.....+++++||||.- +. +.+ ....-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEv--A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEV--APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCcc--CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 5689999999999999999999876543 2333333444455556667789999999952 11 111 11122
Q ss_pred cCCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 81 RGAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 81 ~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
.-.++++|+||.+. ..+++....++.++...-. .|+++|+||.|+.+.+.....+.. ....-+.....+++..+.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~ 322 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGC 322 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehh
Confidence 33578999999984 4567887888999887643 889999999998866655444443 334444457788888888
Q ss_pred CHHHHHHHHHHHHHh
Q 029103 159 NVNELFYEIAKRLAE 173 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~ 173 (199)
+++..-..+.....+
T Consensus 323 ~~d~~~~~v~~~a~~ 337 (346)
T COG1084 323 GLDKLREEVRKTALE 337 (346)
T ss_pred hHHHHHHHHHHHhhc
Confidence 888877777766544
No 232
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1.8e-16 Score=118.96 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCC-------------------cCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQ-------------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
.+|+|+|++|+|||||+++|+...-. ... ....+.........+...+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999852110 000 0012333445555667778899999999999
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
.|.......+..+|++|+|+|+++.... ....++..... .+.|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 8887677778999999999999875322 22334433332 46889999999998653
No 233
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=1.4e-16 Score=127.97 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=99.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC------CC--------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ------FF--------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|+++|++++|||||+++|+... .. ...+...+++.......+.....++.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4568999999999999999999998521 00 011222344444444445555668899999999998
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccCCH---HHHHHHHHHh---
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKVKN---EEGELYAQEN--- 145 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~--- 145 (199)
.......+..+|++++|+|+.+... .+..+++..+... ++| +++++||+|+.+..+..+ .+...+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 8777777789999999999886532 2334454444433 556 678899999865322111 1233333332
Q ss_pred --CCcEEEeccCCCCC
Q 029103 146 --GLSFLETSAKSAHN 159 (199)
Q Consensus 146 --~~~~~~~s~~~~~~ 159 (199)
+++++++|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 46799999988753
No 234
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.8e-16 Score=124.09 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..-|.++|+-..|||||++.+-+..........++......++..+. ....+.|+|||||+.|..++..-..-+|++||
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 45689999999999999999987776665555555555555555442 34578899999999999999888889999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC---------CcEEEeccCCCCC
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG---------LSFLETSAKSAHN 159 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~ 159 (199)
|++++|.- +.+..+.++..+ ..+.|++|++||+|.++.. ++....++ .++| ..++++||++|+|
T Consensus 85 VVa~dDGv-~pQTiEAI~hak---~a~vP~iVAiNKiDk~~~n--p~~v~~el-~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 85 VVAADDGV-MPQTIEAINHAK---AAGVPIVVAINKIDKPEAN--PDKVKQEL-QEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEccCCc-chhHHHHHHHHH---HCCCCEEEEEecccCCCCC--HHHHHHHH-HHcCCCHhhcCCceEEEEeeccCCCC
Confidence 99998752 223233334443 4589999999999998432 22222222 2223 3589999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029103 160 VNELFYEIAKRLAEV 174 (199)
Q Consensus 160 v~~~~~~l~~~~~~~ 174 (199)
+++++..|.-.....
T Consensus 158 i~eLL~~ill~aev~ 172 (509)
T COG0532 158 IDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887766554
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=4.4e-16 Score=117.44 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=92.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---- 74 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---- 74 (199)
..++|+++|.+|+|||||+|+|++..+... ..++.........+..++..+++.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 478999999999999999999998765433 223333444455555567778999999999532211
Q ss_pred ----------------------ccccccc--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 75 ----------------------LAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 75 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+...+. .+|+++|+++.+.. .+... ...++.+. ...|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 1112233 46777888876642 11111 23334443 2688999999999855
Q ss_pred cc--cCCHHHHHHHHHHhCCcEEEeccCC
Q 029103 130 KR--KVKNEEGELYAQENGLSFLETSAKS 156 (199)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
.. .............++++++......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 22 2234445677778899998877544
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=1.5e-16 Score=127.27 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=104.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--C---------------------------CCCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--F---------------------------DFQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~ 57 (199)
..+.++|+++|+.++|||||+.+|+...- . ...+...+++.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35689999999999999999999875110 0 001122334444455556677
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH-------HHHHHHHHHHHHhCCCCc-eEEEEEeCCCCcc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF-------ERAKKWVQELQRQGNPNL-IMFLVANKVDLEE 129 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~ 129 (199)
...+.++|+|||++|.......+..+|++|+|+|+++. .+ .+..+.+...... ++ +++|++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCc
Confidence 78899999999999998888889999999999999863 22 2334443333332 44 4688899999762
Q ss_pred ccc------CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 029103 130 KRK------VKNEEGELYAQENG-----LSFLETSAKSAHNVNE 162 (199)
Q Consensus 130 ~~~------~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 162 (199)
... ....+...+....+ ++++++|+++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 110 01234455555555 6799999999999853
No 237
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=5.4e-16 Score=111.81 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccce---eEEEEEEEeCCeEEEEEEEeCCCccccccccc-----cccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA---AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAP-----MYYR 81 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~-----~~~~ 81 (199)
+++|+++|.+|+|||||+|+|.+...........+. +........ .....+.+||+||......... ..+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999985443222211111 111111111 1134688999999754322222 2256
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----C---CH-H---HHH-HH---HHHhC
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----V---KN-E---EGE-LY---AQENG 146 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~---~~-~---~~~-~~---~~~~~ 146 (199)
.+|+++++.+. +.. ..-..|+..+... +.|+++|+||+|+..... . .. . +.. .. ....+
T Consensus 80 ~~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78888887542 211 1223555555554 578999999999842111 0 01 1 111 11 11112
Q ss_pred ---CcEEEeccC--CCCCHHHHHHHHHHHHHhh
Q 029103 147 ---LSFLETSAK--SAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 147 ---~~~~~~s~~--~~~~v~~~~~~l~~~~~~~ 174 (199)
-++|.+|+. .+.++..+.+.|+..+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 368999998 4689999999999988764
No 238
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=1.4e-16 Score=127.19 Aligned_cols=166 Identities=12% Similarity=0.133 Sum_probs=106.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCC---CCCCcCccceeEEEE---------------EEEeCC-----------
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQF---FDFQESTIGAAFFTQ---------------VLSLNE----------- 56 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~----------- 56 (199)
..+..++|+++|+-..|||||+.+|.+... .++..+.++.+.-.. ......
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 456799999999999999999999997432 111111111111000 000100
Q ss_pred -----eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 57 -----VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 57 -----~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
....+.++|+|||+.|...+...+..+|++++|+|+.++....+..+.+..+... .-.++++++||+|+.+..
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence 0246899999999998877777788999999999998642222333333333322 224688999999987532
Q ss_pred cCCH--HHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 132 KVKN--EEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 132 ~~~~--~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
.... .+...+... .+.+++++|+++|+|++.+++.|.+.+..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 2111 112222221 35789999999999999999998875543
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=4e-16 Score=126.84 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=82.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh--CCCC--C----------------CCcCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK--GQFF--D----------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~ 67 (199)
....+|+|+|++++|||||+++|+. +... . ......+..+......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3467999999999999999999974 1110 0 001112333444455566667889999999
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
|+..|.......+..+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 9998887777788999999999999875322 22344443332 478899999999974
No 240
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.70 E-value=8.8e-17 Score=127.45 Aligned_cols=163 Identities=24% Similarity=0.336 Sum_probs=117.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+++|..|+|||||+=+|....+.+...+....-... ..+....+...+.|++..++-......-++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 3458999999999999999999999888766544332211111 22334445578999986554444445567899999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHH-HHHHHHHhC-C-cEEEeccCCCCCH
Q 029103 87 VVVYDITSMDSFERAK-KWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEE-GELYAQENG-L-SFLETSAKSAHNV 160 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~~~~~v 160 (199)
.+||+++++++++.+. .|++.+.+..+ .++|+|+|+||+|..+......+. ...+...+. + .-++|||++-.++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 9999999999999995 89999988752 789999999999987655442222 333333322 1 2489999999999
Q ss_pred HHHHHHHHHHH
Q 029103 161 NELFYEIAKRL 171 (199)
Q Consensus 161 ~~~~~~l~~~~ 171 (199)
.++|..-...+
T Consensus 164 ~e~fYyaqKaV 174 (625)
T KOG1707|consen 164 SELFYYAQKAV 174 (625)
T ss_pred Hhhhhhhhhee
Confidence 99998665554
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=2.2e-16 Score=115.25 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--CCC--------------CcCccceeEEEEEEEeC--------CeEEEEEEEeCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQF--FDF--------------QESTIGAAFFTQVLSLN--------EVTIKFDIWDTA 67 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~v~l~d~~ 67 (199)
+|+++|+.++|||||+++|....- ... .....++........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986421 100 01111111111122222 347889999999
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
|+..|.......+..+|++++|+|+++....+. ...+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 999999888999999999999999987654433 233333332 357899999999975
No 242
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=5.5e-16 Score=111.75 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------c---cccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------L---APMY 79 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~---~~~~ 79 (199)
++|+++|.+|+|||||+|+|++...........+.+...........+..+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998754332221222222222222222345789999999654321 1 1122
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccC------CHHHHHHHHHHhCCcEEE
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKV------KNEEGELYAQENGLSFLE 151 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~ 151 (199)
..+.|++++|+++.+ .+.+. ...++.+..... .-.++++++|+.|....... .......+....+..|+.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 467899999999876 22222 233444433322 22468899999996543211 113345555666666666
Q ss_pred ecc-----CCCCCHHHHHHHHHHHHHhhC
Q 029103 152 TSA-----KSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 152 ~s~-----~~~~~v~~~~~~l~~~~~~~~ 175 (199)
++. .++.++.++++.|.+.+.+..
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 653 456779999999988888743
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=3.8e-16 Score=124.97 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=101.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhC--CCCC---------------------------CCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKG--QFFD---------------------------FQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 57 (199)
..+.++|+++|+.++|||||+.+|+.. .... ..+...+.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 456899999999999999999998761 1110 01112234444455556677
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcc-
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLI-MFLVANKVDLEE- 129 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~- 129 (199)
...+.|+|+|||.+|.......+..+|++++|+|+++..- -.+..+.+..+... ++| ++|++||.|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccc
Confidence 7889999999999998777777899999999999986421 12333444444333 444 678999999532
Q ss_pred -c--ccCC--HHHHHHHHHHh-----CCcEEEeccCCCCCHHH
Q 029103 130 -K--RKVK--NEEGELYAQEN-----GLSFLETSAKSAHNVNE 162 (199)
Q Consensus 130 -~--~~~~--~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~ 162 (199)
. .... ..+...+.... +++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 1111 12222222222 36799999999999864
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=4.4e-16 Score=119.15 Aligned_cols=159 Identities=17% Similarity=0.134 Sum_probs=96.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEE---------------------eCC-eEEEEEEEeCCCc-
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLS---------------------LNE-VTIKFDIWDTAGQ- 69 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~v~l~d~~g~- 69 (199)
|+++|.|+||||||+++|++........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 58999999999999999998764322222211111111111 112 3467999999997
Q ss_pred ---cccccccccc---ccCCCEEEEEEECCC---------------H-HHHHHH----HHH-HHH---------------
Q 029103 70 ---ERYHSLAPMY---YRGAAAAVVVYDITS---------------M-DSFERA----KKW-VQE--------------- 107 (199)
Q Consensus 70 ---~~~~~~~~~~---~~~~d~~i~v~d~~~---------------~-~s~~~~----~~~-~~~--------------- 107 (199)
+++..+...+ ++++|++++|+|+++ | ..++.+ ..| +..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444443 899999999999973 1 011111 111 000
Q ss_pred -----------HH-------------Hh----------------------CCCCceEEEEEeCCCCcccccCCHHHHHHH
Q 029103 108 -----------LQ-------------RQ----------------------GNPNLIMFLVANKVDLEEKRKVKNEEGELY 141 (199)
Q Consensus 108 -----------~~-------------~~----------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 141 (199)
+. .. .....|+++++||.|+.+.... .....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~---~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN---ISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH---HHHHH
Confidence 00 00 0234799999999997543221 11111
Q ss_pred HHHhCCcEEEeccCCCCCHHHHHH-HHHHHHHhh
Q 029103 142 AQENGLSFLETSAKSAHNVNELFY-EIAKRLAEV 174 (199)
Q Consensus 142 ~~~~~~~~~~~s~~~~~~v~~~~~-~l~~~~~~~ 174 (199)
.......++++||+.+.++.++.+ .+.+++.+.
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 222356799999999999999998 688888664
No 245
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=5.9e-16 Score=116.06 Aligned_cols=163 Identities=19% Similarity=0.170 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----cccccc---ccCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMY---YRGAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~---~~~~d 84 (199)
-|.++|.|++|||||+++++..+.--...+..+.....-.+.. .....+.+-|+||.-+-. .+-..| +..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4679999999999999999986654322332222222223333 344468899999964322 222333 56678
Q ss_pred EEEEEEECCCHH---HHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEE-eccCCCC
Q 029103 85 AAVVVYDITSMD---SFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLE-TSAKSAH 158 (199)
Q Consensus 85 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~ 158 (199)
++++|+|++..+ ..+....+..++..+. ..+.|.+||+||+|+....+........+....++.... +|+.+++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998543 3666666667776654 368889999999997654444445556666655654332 9999999
Q ss_pred CHHHHHHHHHHHHHhhC
Q 029103 159 NVNELFYEIAKRLAEVN 175 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~~ 175 (199)
|++++...+.+.+....
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887764
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.69 E-value=3.6e-16 Score=126.02 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=97.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCC-----------C------------------cCccceeEEEEEEEeC
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF-----------Q------------------ESTIGAAFFTQVLSLN 55 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~-----------~------------------~~~~~~~~~~~~~~~~ 55 (199)
....++|+++|++++|||||+++|+...- ... . +...+++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35689999999999999999999985321 100 0 0011223334444455
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 029103 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135 (199)
Q Consensus 56 ~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 135 (199)
....++.++||||++.|.......+..+|++++|+|+.+.-. .+....+..+.... ..|+++++||+|+.+......
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHHHHhC--CCceEEEEEeeccccchhHHH
Confidence 556789999999998887655556789999999999976421 11122222222221 246889999999874221111
Q ss_pred HH----HHHHHHHh----CCcEEEeccCCCCCHHHH
Q 029103 136 EE----GELYAQEN----GLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 136 ~~----~~~~~~~~----~~~~~~~s~~~~~~v~~~ 163 (199)
.+ ...+.... ..+++++|+++|+|+.+.
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11 11222222 367999999999998764
No 247
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.1e-16 Score=121.96 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=117.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC--C-----------CCcCccceeEEEEEEEe---CCeEEEEEEEeCCCccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--D-----------FQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~---~~~~~~v~l~d~~g~~~~~ 73 (199)
-.++.|+-+-..|||||.++|+...-. + ..+..-+++....+... ++..+.++++|||||..|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 468899999999999999999873220 0 01122344444333333 3566999999999999999
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHHhCCcEEEe
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLET 152 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~ 152 (199)
.....-+..++++++|+|++..-..+.+..++..+. .+..+|.|+||+|++..+.. -..+...+....+.+.+.+
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~v 215 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYV 215 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEE
Confidence 888888899999999999987655566656655553 46668999999999865421 1222333334445579999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhC
Q 029103 153 SAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
||++|.|+.++|+.|++.+....
T Consensus 216 SAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 216 SAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred EeccCccHHHHHHHHHhhCCCCC
Confidence 99999999999999999887644
No 248
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=6.9e-17 Score=121.84 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCC----c--C----------ccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQ----E--S----------TIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~----~--~----------~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~ 75 (199)
+|+++|++|+|||||+++|+........ . . ..+.........+......+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753211000 0 0 0011122223334445578899999999888777
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEE--Eec
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFL--ETS 153 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~s 153 (199)
+..++..+|++++|+|.++....... ..+..+.. .+.|.++++||.|..... .......+....+.+++ .+.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 88889999999999999876443322 22333333 367899999999987542 22334445455555544 334
Q ss_pred cCCCCCHHHHHHHHH
Q 029103 154 AKSAHNVNELFYEIA 168 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~ 168 (199)
..++.++..+.+.+.
T Consensus 155 ~~~~~~~~~~vd~~~ 169 (268)
T cd04170 155 IGEGDDFKGVVDLLT 169 (268)
T ss_pred ccCCCceeEEEEccc
Confidence 556555554444443
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=2.4e-16 Score=118.42 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=80.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC--CC--------------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQF--FD--------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~ 75 (199)
+|+++|++|+|||||+++|+...- .. ......+++.......+...+.++.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211 00 01122244444445555556788999999999888888
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
+...+..+|++++|+|+.+...-. ...++..+.. .+.|+++++||.|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888999999999999998653222 2334444433 3678999999999864
No 250
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.7e-15 Score=117.76 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=121.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC---------------CCCCCcCccceeEEEEEEEe---CCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ---------------FFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~d~~g~~ 70 (199)
.-.+..|+-+-..|||||.++|+... +.-+....+++......... ++..+.++++|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 35577899999999999999998721 11122333343333333333 4577999999999998
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc--
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-- 148 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 148 (199)
.|.-.....+..|-+.++|+|++..-..+.+-..|..+. .+.-++-|+||+|++... .+.-..++..-.|++
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid~~ 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAAD--PERVKQEIEDIIGIDAS 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCC--HHHHHHHHHHHhCCCcc
Confidence 887666666788999999999997766667767766663 466689999999998754 355556666667764
Q ss_pred -EEEeccCCCCCHHHHHHHHHHHHHhhCCCC
Q 029103 149 -FLETSAKSAHNVNELFYEIAKRLAEVNPSR 178 (199)
Q Consensus 149 -~~~~s~~~~~~v~~~~~~l~~~~~~~~~~~ 178 (199)
.+.+|||+|.|++++++.|++.+.....+.
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 799999999999999999999987655443
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=3.6e-16 Score=124.09 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--CC-----------------------------CCcCccceeEEEEEEEeCCeEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQF--FD-----------------------------FQESTIGAAFFTQVLSLNEVTI 59 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
++|+++|+.++|||||+++|+...- .. ..+...+++.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999974211 00 0011122333444444555567
Q ss_pred EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC----H
Q 029103 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK----N 135 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~ 135 (199)
++.++||||++.|.......+..+|++++|+|+.++.. .+..+.+..+.... ..++++++||+|+.+..... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 89999999999887666667889999999999876422 12222222233221 34588899999986422110 1
Q ss_pred HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 029103 136 EEGELYAQENG---LSFLETSAKSAHNVNE 162 (199)
Q Consensus 136 ~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 162 (199)
.+...+....+ ++++++|+++|+|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 11222233333 4699999999999875
No 252
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.4e-16 Score=124.28 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=115.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-cc--------ccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SL--------APM 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~--------~~~ 78 (199)
+..++|+|+|+|+||||||+|.|.+.. .....+..++++......++..++.+.|.||+|..+.. .. ...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~d-rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRED-RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCC-ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 457899999999999999999998543 44567888888888888888888999999999987622 11 133
Q ss_pred cccCCCEEEEEEECC--CHHHHHHHHHHHHHHHHhC------CCCceEEEEEeCCCCccc-ccCCHHHHHHHHHHh---C
Q 029103 79 YYRGAAAAVVVYDIT--SMDSFERAKKWVQELQRQG------NPNLIMFLVANKVDLEEK-RKVKNEEGELYAQEN---G 146 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~---~ 146 (199)
.+..+|++++|+|+. +-++-..+.+.+.....-. ....+++++.||+|+... .+.... ...+.... .
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcc
Confidence 478899999999994 2222222223333332211 234788999999998754 222211 11111111 1
Q ss_pred Cc-EEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 147 LS-FLETSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 147 ~~-~~~~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
.+ +.++|+.+++|++++.+.|...+......
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~ 455 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVVS 455 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhcC
Confidence 23 45699999999999999999988776543
No 253
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.7e-16 Score=105.93 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
+.-|++++|--++|||||++.|...+........-++ .. ...-.+.+++-+|.+||-.....|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT---SE--~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT---SE--ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC---hH--HheecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4568999999999999999999876544322211111 11 122345778899999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHH---HHHHHhC--------------CcEE
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGE---LYAQENG--------------LSFL 150 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~~~--------------~~~~ 150 (199)
.+|+.|.+.+.+.+..++.+.... ....|++|++||+|.+... .+.+.. .+....+ +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999988887777655443 5789999999999987643 222211 1111111 2367
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 029103 151 ETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~l~~~~ 171 (199)
.+|...+.+..+.|.|+.+.+
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 888888888888888776543
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=1.6e-15 Score=123.36 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=82.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh--CCCCC------------------CCcCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK--GQFFD------------------FQESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~ 67 (199)
....+|+|+|++++|||||+++|+. +.... ......+..+......++....++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 11100 001122444555556667778899999999
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (199)
|+..|.......+..+|++|+|+|.++.. ......++..... .+.|+++++||+|+
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~ 144 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDR 144 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccc
Confidence 99888876777889999999999998642 1222344443332 46889999999997
No 255
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=1.1e-15 Score=101.01 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=67.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---------cccccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---------SLAPMYYR 81 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---------~~~~~~~~ 81 (199)
+|+|+|.+|+|||||+|+|++.... ....+..+..........++.. +.++||||..... ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999975432 1112222222222334445544 4699999964211 11223348
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (199)
.+|++++|+|..++.. +....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877422 23334444442 68899999998
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=5.4e-16 Score=113.24 Aligned_cols=165 Identities=15% Similarity=0.229 Sum_probs=108.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc-------cccccccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-------YHSLAPMY 79 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~-------~~~~~~~~ 79 (199)
...+++|+++|..|+|||||+|+|+.+...+...-..+.+........-+ .-.+.+||+||.++ |......+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 35689999999999999999999996554332222223332222222222 24688999999654 66677888
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHHHHHHHH--------
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE-------- 144 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~-------- 144 (199)
+...|.++++.++.|+.---. .+++..+... ..+.++++++|.+|.... ........+.+..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCC-HHHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988742111 2444444433 234789999999997432 11111111111111
Q ss_pred --hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 145 --NGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 145 --~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.--|++.++...+.|++++...+++.+...
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 124688888999999999999999988743
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.1e-14 Score=108.63 Aligned_cols=155 Identities=19% Similarity=0.139 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-------ccccccccC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-------SLAPMYYRG 82 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-------~~~~~~~~~ 82 (199)
..+|+++|+|+||||||++.|++........+..+.+ ..-..+...+.++++.|+||.-.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~--~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLE--PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecc--cccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 5689999999999999999999755432222222222 2222334556788999999964322 223456899
Q ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHHH---HhCCC--------------------------------------------
Q 029103 83 AAAAVVVYDITSMDS-FERAKKWVQELQ---RQGNP-------------------------------------------- 114 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~---~~~~~-------------------------------------------- 114 (199)
+|++++|+|+..+.+ .+.+.+.+...- +...+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986544 444433222210 00000
Q ss_pred ------------------CceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 115 ------------------NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 115 ------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
.+|.+++.||+|+.. .++...+.+.. .++++|++.+.|++++.+.|.+.+--
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 288999999999865 22333333333 78999999999999999999998844
No 258
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=1.5e-15 Score=126.93 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=96.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCC-C-C-----------C------------------cCccceeEEEEEEEe
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-D-F-----------Q------------------ESTIGAAFFTQVLSL 54 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~-~-----------~------------------~~~~~~~~~~~~~~~ 54 (199)
.....++|+++|++++|||||+++|+...-. . . . +...+++.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 3455789999999999999999999863211 0 0 0 000122233333444
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK 134 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 134 (199)
.....++.++||||++.|.......+..+|++++|+|+.+... .+....+..+... ...+++|++||+|+.+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh--CCCeEEEEEEecccccchhHH
Confidence 4556678899999998886655566789999999999976422 1222222223222 235688999999986421110
Q ss_pred H----HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 029103 135 N----EEGELYAQENG---LSFLETSAKSAHNVNE 162 (199)
Q Consensus 135 ~----~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 162 (199)
. .+...+....+ .+++++|+++|+|+.+
T Consensus 177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 11222333444 4589999999999874
No 259
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=1.4e-15 Score=128.25 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=83.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--CC------------cCccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~ 71 (199)
....+|+|+|+.|+|||||+++|+..... . .. ....+.+.......+......+++|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45789999999999999999999853210 0 00 00112222222333444567899999999999
Q ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
|...+..++..+|++++|+|.++.........| ..+.. .+.|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 888888899999999999999876555443333 33333 3688999999999853
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.6e-15 Score=116.29 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=113.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
.+.-|-|+|+-..|||||++.|-+..........++..+-...+.+. .+-.++|.|||||..|..++..-..-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 45678999999999999999997766554444444444433444444 33678999999999999999888899999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH------HhC--CcEEEeccCCCCCH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ------ENG--LSFLETSAKSAHNV 160 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~--~~~~~~s~~~~~~v 160 (199)
|+.+.|.- +.+..+.++ .-...+.|++|.+||+|.++.. .+....++.. .+| ..++++||++|+|+
T Consensus 231 VVAadDGV-mpQT~EaIk---hAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGV-MPQTLEAIK---HAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCc-cHhHHHHHH---HHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99988742 233333333 3335799999999999987533 2333333332 122 46899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029103 161 NELFYEIAKRLAEV 174 (199)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (199)
+.+-+.+.-+..-+
T Consensus 305 ~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 305 DLLEEAILLLAEVM 318 (683)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887766443
No 261
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=2.9e-16 Score=110.04 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=71.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe-CCeEEEEEEEeCCCcccccccccc---cccCCCE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL-NEVTIKFDIWDTAGQERYHSLAPM---YYRGAAA 85 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~d~~g~~~~~~~~~~---~~~~~d~ 85 (199)
.-.|+++|+.|+|||+|+..|..+...+...+... .. ...+ ......+.++|+|||++....... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 34789999999999999999999876665555421 11 1111 223446789999999887653333 4778999
Q ss_pred EEEEEECCC-HHHHHHHH-HHHHHHHHh--CCCCceEEEEEeCCCCccc
Q 029103 86 AVVVYDITS-MDSFERAK-KWVQELQRQ--GNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 86 ~i~v~d~~~-~~s~~~~~-~~~~~~~~~--~~~~~p~ivv~nK~D~~~~ 130 (199)
+|||+|.+. ...+..+- .+|..+... ....+|++|+.||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999874 33444443 344443332 2578999999999998753
No 262
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=1.4e-14 Score=117.49 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcccc-----cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 59 IKFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 59 ~~v~l~d~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
.++.|.||||.... .......+..+|++++|+|.....+... ....+.+... ..+.|+++|+||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 46889999997542 2223446899999999999986433222 2334444443 223589999999998643322
Q ss_pred CHHHHHHHHH----HhC---CcEEEeccCCCCCHHHHHHHHHHH
Q 029103 134 KNEEGELYAQ----ENG---LSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 134 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
.......+.. ..+ ..+|++||+.|.|++++++.|...
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2333333322 112 358999999999999999988763
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.62 E-value=1.3e-14 Score=122.23 Aligned_cols=118 Identities=17% Similarity=0.111 Sum_probs=81.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--C------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--F------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
...-.+|+|+|++++|||||+++|+...-. . . .....+++.......+...+.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 345678999999999999999999752110 0 0 00122333333334444456789999999998
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.+...+...+..+|++++|+|+.+...... ...+..+.. .+.|.++++||+|+.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 887778888999999999999987533222 233343433 367889999999985
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=6.5e-15 Score=124.08 Aligned_cols=123 Identities=17% Similarity=0.090 Sum_probs=85.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--CC------------cCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--FQ------------ESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~ 67 (199)
..+...-.+|+|+|++++|||||+++|+...-. . .. ....+++.......+...+.++.+||||
T Consensus 4 ~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTP 83 (689)
T TIGR00484 4 TTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTP 83 (689)
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECC
Confidence 344445679999999999999999999742110 0 00 0112334444444455556789999999
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
|+..+...+...+..+|++++|+|+.+....+. ..++..+.. .+.|+++++||+|+...
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 998887778888999999999999987543333 233333333 36789999999998753
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=8.1e-15 Score=112.57 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=103.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC--C---------------------------CCCCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--F---------------------------FDFQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 57 (199)
..+.++++++|+..+|||||+-+|+-.. . ....+...+.+.......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4568999999999999999999987611 0 0011222355566666777777
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
.+.+.++|+|||..|-..+-.-+..+|+.|+|+|+.+.+. ..+.++..-..+.. + -..++|++||.|..+-+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-G-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-G-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-C-CceEEEEEEcccccccC
Confidence 7889999999999998888888889999999999987631 12222222222222 2 33468889999997622
Q ss_pred cCCHHH----HHHHHHHhC-----CcEEEeccCCCCCHHHH
Q 029103 132 KVKNEE----GELYAQENG-----LSFLETSAKSAHNVNEL 163 (199)
Q Consensus 132 ~~~~~~----~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 163 (199)
+...++ ...+.+..| ++|+++|+..|+|+.+-
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 111111 222333333 56999999999987653
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=5e-14 Score=110.99 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe---------------------C-CeEEEEEEEeCCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL---------------------N-EVTIKFDIWDTAG 68 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~v~l~d~~g 68 (199)
++|+++|.|+||||||+++|++........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999987654322222222222211111 1 2346789999999
Q ss_pred cc----ccccccccc---ccCCCEEEEEEECC
Q 029103 69 QE----RYHSLAPMY---YRGAAAAVVVYDIT 93 (199)
Q Consensus 69 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 93 (199)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 233333444 88999999999996
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=6.1e-14 Score=118.22 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=81.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHh--CCCCCC--C------------cCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDF--Q------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
+...-.+|+|+|++++|||||+++|+. +..... . ....+++.......+...+.++.++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 344567999999999999999999974 111000 0 012233444444444445678999999999
Q ss_pred ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
..|.......+..+|++++|+|+...-..+. ...+..+... +.|.++++||+|+.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~ 140 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCC
Confidence 8776666677889999999999876533333 3333444433 57789999999985
No 268
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.53 E-value=2.7e-13 Score=97.62 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=64.3
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG 138 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 138 (199)
....++++.|........+. -++.+|.|+|+.+.+.... .+...+ ...-++++||+|+.+.........
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 45567788884322222221 2678999999987655322 111222 111389999999975322223333
Q ss_pred HHHHH--HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 139 ELYAQ--ENGLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 139 ~~~~~--~~~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
....+ ..+.+++++|+++|+|++++|++|.+.+.
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33333 34578999999999999999999997654
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=6.2e-13 Score=102.38 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=85.3
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 125 (199)
..+.+.+||++|+......|..++.+++++++|+|+++. ..+.+....+..+.+.. ..+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457788999999999999999999999999999999874 44555555555555543 3789999999999
Q ss_pred CCcccc----------------cCCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 126 DLEEKR----------------KVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 126 D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
|+..+. ......+..+... ..+..+.++|.+..++..+|+.+.+.+.+.
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 963211 1122333222221 234457788888899999998888887764
No 270
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=6.1e-14 Score=98.65 Aligned_cols=115 Identities=22% Similarity=0.245 Sum_probs=76.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccccc---CCCEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR---GAAAA 86 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~---~~d~~ 86 (199)
.-.|+++|+.++|||+|+-.|..+.+...+.+..+-.. ...... -.+.++|.|||.+...-...++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a---~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA---TYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeecccee---eEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 45799999999999999999988765554444332222 111222 23789999999877655444554 78899
Q ss_pred EEEEECCC-HHHHHHHHH-HHHHHHHh--CCCCceEEEEEeCCCCcc
Q 029103 87 VVVYDITS-MDSFERAKK-WVQELQRQ--GNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 87 i~v~d~~~-~~s~~~~~~-~~~~~~~~--~~~~~p~ivv~nK~D~~~ 129 (199)
++|+|... ..-...+-+ +|..+... ....+|++|+.||.|+..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 99999763 222344433 33333333 357889999999999853
No 271
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.52 E-value=1.5e-13 Score=100.15 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc--cceeEEEEEEEeCCeEEEEEEEeCCCcccccc--------cc---c
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST--IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS--------LA---P 77 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~--------~~---~ 77 (199)
++|+|+|.+|+||||++|.+++........+. .............+ ..+.++||||...... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987655433222 22222333334444 5678999999532211 11 1
Q ss_pred ccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-------HHHHHHHHHHhCCcE
Q 029103 78 MYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------NEEGELYAQENGLSF 149 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~ 149 (199)
...++.++++||+.+.... .-.....++..+.... .-..++||+|..|......+. ......+....+-.|
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 2246789999999988321 1112222333322211 123478889998865543311 122445666778788
Q ss_pred EEeccC------CCCCHHHHHHHHHHHHHhhCC
Q 029103 150 LETSAK------SAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 150 ~~~s~~------~~~~v~~~~~~l~~~~~~~~~ 176 (199)
..++.+ +...+.++++.|-+.+.+...
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 888876 235688999988888888653
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=2.4e-13 Score=114.58 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=74.5
Q ss_pred EcCCCCcHHHHHHHHHhCCCC--C--C------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccc
Q 029103 16 LGDMGTGKTSLVLRFVKGQFF--D--F------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMY 79 (199)
Q Consensus 16 ~G~~~~GKSsL~~~l~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~ 79 (199)
+|++++|||||+++|....-. . . .....+.+.......+...++.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999642110 0 0 00012223333334444456789999999998887777888
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
+..+|++++|+|.++....... .++..+.. .+.|+++++||+|..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 8999999999999876544433 33333332 367899999999975
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=6e-13 Score=114.72 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=95.2
Q ss_pred cHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe----------------EEEEEEEeCCCcccccccccccccCCCE
Q 029103 22 GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------------TIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 22 GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+||||+++|-+..........++...-...+..+.. ...+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999887665544444444433333333211 1138899999999998877777888999
Q ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH------------H-HHHHH--------
Q 029103 86 AVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN------------E-EGELY-------- 141 (199)
Q Consensus 86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------------~-~~~~~-------- 141 (199)
+++|+|+++. .+.+. +..+.. .+.|+++++||+|+...+.... . ...++
T Consensus 553 vlLVVDa~~Gi~~qT~e~----I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEA----INILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHH----HHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999863 33333 233333 3678999999999864332110 0 01111
Q ss_pred --HHH---------------hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 142 --AQE---------------NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 142 --~~~---------------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
..+ ..++++++||++|+|+++++.+|......
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 011 13578999999999999999988765443
No 274
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.49 E-value=6.4e-13 Score=103.46 Aligned_cols=168 Identities=15% Similarity=0.172 Sum_probs=118.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC--------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~ 75 (199)
-.+|+|+-+...|||||++.|+.+.-. +......++++-.+...+.+..+++++.|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 358999999999999999999984321 111233466666666777778899999999999999999
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHH-------HhCC
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQ-------ENGL 147 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~-------~~~~ 147 (199)
.+..+.-+|++++++|+.+. .+.+.+-.++.... .+.+.|||+||+|.++.+... ..+..++.. .++.
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999999863 34444333333222 244469999999998654221 122233332 3457
Q ss_pred cEEEeccCCC----------CCHHHHHHHHHHHHHhhCCCCCCC
Q 029103 148 SFLETSAKSA----------HNVNELFYEIAKRLAEVNPSRQTG 181 (199)
Q Consensus 148 ~~~~~s~~~~----------~~v~~~~~~l~~~~~~~~~~~~~~ 181 (199)
+++..|+++| +++.-+|+.|++++....-+....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~P 204 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEP 204 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCC
Confidence 8999999887 368889999999887755443333
No 275
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.3e-13 Score=101.47 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=116.6
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCC---CCCCcCcccee------------------EEEEEEEeC----
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQF---FDFQESTIGAA------------------FFTQVLSLN---- 55 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~---~~~~~~~~~~~------------------~~~~~~~~~---- 55 (199)
|+.....+.+++|.++|+-..|||||..+|++--. .++....+++. .+.....+.
T Consensus 1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence 55656668899999999999999999999998211 11111111110 011111111
Q ss_pred --CeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 56 --EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 56 --~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
.....+.|.|.|||+-....+-+-..-.|++++|+.++.+-...+.++.+-.+.-.. -..++|+=||+|+.+.++-
T Consensus 81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHH
Confidence 234568899999998766555555566799999999998755555555554443332 2337888899999764322
Q ss_pred --CHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCCCC
Q 029103 134 --KNEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPSRQ 179 (199)
Q Consensus 134 --~~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~~~ 179 (199)
...+.+.|.+. -+.+++++||..+.|++-+++.|.+.+.....+..
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~ 209 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD 209 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence 22334444442 35789999999999999999999998877654433
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=3.6e-13 Score=99.98 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=69.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----------cc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LA 76 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----------~~ 76 (199)
...+++|+|+|.+|||||||+|+|.+......... .+.+...........+..+.+|||||...... ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 35689999999999999999999998654322111 11112122222223346789999999754421 01
Q ss_pred ccccc--CCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCc
Q 029103 77 PMYYR--GAAAAVVVYDITSMD-SFERAKKWVQELQRQGN--PNLIMFLVANKVDLE 128 (199)
Q Consensus 77 ~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 128 (199)
..++. ..+++++|..++... ...+ ...++.+..... .-.++++|+||+|..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 22332 567888887665321 1111 233333433222 124589999999974
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=8.2e-13 Score=99.74 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=68.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-------ccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYY 80 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-------~~~~~ 80 (199)
...++|+++|.+|+||||++|+|++....... ...+.+...........+.++.++||||....... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 46899999999999999999999986532211 11111111111222224568999999997643211 11111
Q ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCc
Q 029103 81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLE 128 (199)
Q Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 128 (199)
...|+++||..++.....+.-...++.+....+ .-.+.+|++|+.|..
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 268999999665421111111223333333211 224589999999965
No 278
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=1.6e-13 Score=107.63 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-cc---c-----cccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-HS---L-----APMY 79 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-~~---~-----~~~~ 79 (199)
....++|+|.|+||||||+|.+......- .+-..++.......++.....++++||||+-.. .+ . ....
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvev--qpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEV--QPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccccc--CCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 46788999999999999999887655432 222222233333444566678999999996322 11 1 1122
Q ss_pred ccCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH---HHHHHHHhCCcEEEecc
Q 029103 80 YRGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE---GELYAQENGLSFLETSA 154 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~ 154 (199)
..--.+++|+.|++.. .|......++..++-. ..+.|+|+|+||+|+...+..+... ...+....+++++.+|+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 2223588999999853 5666767788877665 5788999999999997666555544 34444555688999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 029103 155 KSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~~~~~ 174 (199)
.+.+|+.++-..-.+.+...
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cchhceeeHHHHHHHHHHHH
Confidence 99999988877777666544
No 279
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.47 E-value=1.4e-12 Score=100.20 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=68.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 137 (199)
++.+.++||+|...-... ....+|.++++.+...++.+...+. .+... .-++|+||.|+...... ...
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a-~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAA-RRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHH-HHH
Confidence 467889999997633322 4667999999987555554544332 12111 13899999998653311 111
Q ss_pred HHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 138 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 138 ~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
..++... +..+++.+|++++.|++++++.|.+++....
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 1122211 2257999999999999999999999876443
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=2.5e-13 Score=114.92 Aligned_cols=117 Identities=22% Similarity=0.213 Sum_probs=79.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCC---------------CCC-CCcC--ccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ---------------FFD-FQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~---------------~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
....+|+++|+.++|||||+++|+... +.. +... ++..........+.+..+++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 346799999999999999999997521 000 0001 1111112223335677889999999999
Q ss_pred ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
..|.......+..+|++++|+|+.+.-..+. ...+.... ..+.|.++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL---KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH---HcCCCEEEEEEChhcc
Confidence 9888777888999999999999986422222 22222222 2356778999999985
No 281
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.45 E-value=2.3e-12 Score=100.01 Aligned_cols=118 Identities=14% Similarity=0.222 Sum_probs=84.0
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 125 (199)
....+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+...++..+.+.. ..+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 345678999999999999999999999999999999963 34555556666665543 4789999999999
Q ss_pred CCcccc---------------cCCHHHHHHHHH-----H------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 126 DLEEKR---------------KVKNEEGELYAQ-----E------NGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 126 D~~~~~---------------~~~~~~~~~~~~-----~------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
|+.... ......+..+.. . ..+..+.++|.+..++..+|+.+.+.+.+.
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 973211 012222222221 1 124457788888899999998888777664
No 282
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.44 E-value=6.4e-12 Score=100.58 Aligned_cols=165 Identities=20% Similarity=0.295 Sum_probs=117.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC--CeEEEEEEEeCCCcccccccccccccCC--
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN--EVTIKFDIWDTAGQERYHSLAPMYYRGA-- 83 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~d~~g~~~~~~~~~~~~~~~-- 83 (199)
..+-.|+|+|..++|||||+.+|.+.. ...++.+.+|....+.-+ +...++.+|...|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 346799999999999999999987532 344566777766655443 2345689999988777777766655543
Q ss_pred --CEEEEEEECCCHHHH-HHHHHHHHHHHH-------------------------hC-----C-----------------
Q 029103 84 --AAAVVVYDITSMDSF-ERAKKWVQELQR-------------------------QG-----N----------------- 113 (199)
Q Consensus 84 --d~~i~v~d~~~~~s~-~~~~~~~~~~~~-------------------------~~-----~----------------- 113 (199)
-++|+|+|.+.|..+ +.+..|+..+.. +. .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 388999999998653 566666544321 00 0
Q ss_pred ---------------CCceEEEEEeCCCCcccc----c-------CCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 114 ---------------PNLIMFLVANKVDLEEKR----K-------VKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 114 ---------------~~~p~ivv~nK~D~~~~~----~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
-++|++||.+|+|..... . ....-.+.++..+|..++.+|++...+++-+..+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 037999999999974311 1 11122577778899999999999999999999998
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+....
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 88887654
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=7.9e-13 Score=98.22 Aligned_cols=96 Identities=22% Similarity=0.332 Sum_probs=77.9
Q ss_pred ccccccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc
Q 029103 70 ERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148 (199)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
+++..+.+.++.++|.+++|||++++. +++.+.+|+..+.. .++|+++|+||+|+.+...........+. ..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 667788888999999999999999887 88899899876643 57889999999999754443333344443 57889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 029103 149 FLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~l~~ 169 (199)
++.+|+++|+|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988764
No 284
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.43 E-value=9.5e-13 Score=87.66 Aligned_cols=114 Identities=32% Similarity=0.421 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-CccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
+||+++|..|+|||+|+.++....+..... ++.+ +......+.+..+.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997666543222 2221 222334566788999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
++.++..+++.+ |...+......+.|.++++||.|+.+..+...... ..+++.|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999888765 77766655456788899999999854333333222 245677888988874
No 285
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.43 E-value=2.8e-12 Score=96.78 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=104.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCC-------------C-----C-------------CCcCccceeEEEEEEEeCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF-------------F-----D-------------FQESTIGAAFFTQVLSLNE 56 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~-------------~-----~-------------~~~~~~~~~~~~~~~~~~~ 56 (199)
+..++.+-+|...-|||||+-+|+-..- . . ..+..+++++......+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4578999999999999999999887110 0 0 0112245666666666677
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 136 (199)
.+.+|.+.|||||++|...+-.-..-+|+.|+++|+.. .-+++.++. ..+... ..-..+++.+||+|+.+-++-...
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRH-s~I~sL-LGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRH-SFIASL-LGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHH-HHHHHH-hCCcEEEEEEeeecccccCHHHHH
Confidence 77889999999999999888877888999999999853 233444332 222222 123447888999999864432222
Q ss_pred ----HHHHHHHHhCC---cEEEeccCCCCCHH
Q 029103 137 ----EGELYAQENGL---SFLETSAKSAHNVN 161 (199)
Q Consensus 137 ----~~~~~~~~~~~---~~~~~s~~~~~~v~ 161 (199)
+-..|+..+++ .++++||+.|+|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 23555666664 48999999999864
No 286
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=9.4e-13 Score=98.30 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=69.9
Q ss_pred EEEEEeCCCcccc---cccccccccC-----CCEEEEEEECCCHHHH-HHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 60 KFDIWDTAGQERY---HSLAPMYYRG-----AAAAVVVYDITSMDSF-ERA-KKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 60 ~v~l~d~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~-~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+.+||+||+.++ ...+..+++. .+++++++|....... +.. ..|+...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5789999997653 3333333222 8899999999643222 111 1222222211 24789999999999865
Q ss_pred cccCCHHHH--H------------------------HHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 130 KRKVKNEEG--E------------------------LYAQENG--LSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 130 ~~~~~~~~~--~------------------------~~~~~~~--~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
..+...... . ......+ .+++++|+++++|+++++++|.+.+.-
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 432211100 0 0111223 578999999999999999999888743
No 287
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.41 E-value=3.8e-12 Score=92.46 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=83.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC------cCcccee--------EEEEEEEe------------------CC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ------ESTIGAA--------FFTQVLSL------------------NE 56 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~------~~~~~~~--------~~~~~~~~------------------~~ 56 (199)
....|.++|++|+|||||++++......... ......+ .......- ..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3678899999999999999998863110000 0000000 00000000 00
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 136 (199)
....+.++|+.|.-. .. ..+....+..+.|+|+.+.+... ... ... ...|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 123566777777210 01 11112345556788876543211 111 111 23457999999999753322233
Q ss_pred HHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 137 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
......+.. ..+++.+|+++++|++++|+++.++
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 333333333 3789999999999999999999875
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=99.41 E-value=6.5e-12 Score=98.24 Aligned_cols=86 Identities=19% Similarity=0.082 Sum_probs=57.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY 72 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~ 72 (199)
...++|+|+|.|+||||||+|+|.+........+..+.+.......+.+. ..++.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35789999999999999999999876543333333333333333433322 235899999996422
Q ss_pred cc----cc---cccccCCCEEEEEEECC
Q 029103 73 HS----LA---PMYYRGAAAAVVVYDIT 93 (199)
Q Consensus 73 ~~----~~---~~~~~~~d~~i~v~d~~ 93 (199)
.. +. -..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 11 22467899999999974
No 289
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.6e-12 Score=98.10 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=85.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh--C--------------CCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK--G--------------QFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~--~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g 68 (199)
.+...+|+-+|.+|||||-..|+- + ... -.....-++........++..+..++|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 456789999999999999998775 0 000 00122346666777777777788999999999
Q ss_pred cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (199)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (199)
|+.|.+-....+..+|..+.|+|+...-.-+. .+++...+ ..++|++-++||.|.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcr---lR~iPI~TFiNKlDR 145 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCR---LRDIPIFTFINKLDR 145 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHh---hcCCceEEEeecccc
Confidence 99999999989999999999999986522222 33433332 368999999999995
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.41 E-value=1.5e-11 Score=98.17 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=122.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
..-++..++|+.++|||.|++.+.+..+...+..+....+........+....+.+-|++-. ....+...- ..+|+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 34778899999999999999999998877755566666666666666677777888888754 222222222 7899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc-EEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS-FLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~~ 166 (199)
++||.+++.++..+...++..... ...|+++|++|.|+.+..+.....-.+++++++++ .+.+|.+.... .++|..
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 999999999999988777765444 78999999999999875544444448899999986 57777774333 889988
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|..+..-..
T Consensus 578 L~~~A~~Ph 586 (625)
T KOG1707|consen 578 LATMAQYPH 586 (625)
T ss_pred HHHhhhCCC
Confidence 887775543
No 291
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=6.4e-12 Score=94.75 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=93.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-------CCcCccceeEEEEEEEe-------CCeEEEEEEEeCCCccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-------FQESTIGAAFFTQVLSL-------NEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~v~l~d~~g~~~~~ 73 (199)
..++++.++|+-.+|||||.++|..-.... .....+..+.-...+.+ .+...++.++|+|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 446999999999999999999998733221 11222222222222222 3445789999999987654
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc-CC--HHHHHHHHHH-----
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK-VK--NEEGELYAQE----- 144 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~--~~~~~~~~~~----- 144 (199)
...-...+-.|..++|+|+.....-+... -.+-++. + ...+||+||+|...+.+ .. +...+...+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---C--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---c--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 44333445568889999998653222211 1111111 1 22577788888643211 11 1222222222
Q ss_pred --hCCcEEEeccCCC----CCHHHHHHHHHHHHHhh
Q 029103 145 --NGLSFLETSAKSA----HNVNELFYEIAKRLAEV 174 (199)
Q Consensus 145 --~~~~~~~~s~~~~----~~v~~~~~~l~~~~~~~ 174 (199)
.+.|++++|+++| +++.++.+.|...+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 1378999999999 55666666555555443
No 292
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.41 E-value=8.7e-13 Score=85.12 Aligned_cols=136 Identities=23% Similarity=0.224 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc----ccccccccCCCEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----SLAPMYYRGAAAAV 87 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----~~~~~~~~~~d~~i 87 (199)
||+++|..|+|||||.+.|.+.... +..+..+++ ++.. .+||||.--.. .........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~-------~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF-------NDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceeec-------cCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999875432 223332221 1111 46999943222 22234467899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~ 166 (199)
+|-.++++++.-.. . +... -..|+|-+++|.|+.+..+ ....+.+..+-|. ++|.+|+.++.|++++++.
T Consensus 70 ~v~~and~~s~f~p-~----f~~~--~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFPP-G----FLDI--GVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCCc-c----cccc--cccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999988543221 1 1111 2344888999999986333 4445555555564 5899999999999999988
Q ss_pred HHH
Q 029103 167 IAK 169 (199)
Q Consensus 167 l~~ 169 (199)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 764
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.40 E-value=7.5e-12 Score=92.00 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=82.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
......|+++|++|+|||||++.|.+...........+. + .+ ......++.++|+||.. ..+ ......+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 345778999999999999999999864222111111111 1 11 12245678899999864 222 2345789999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCccccc-CCH--HHHH-HHHH--HhCCcEEEeccCCCC
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDLEEKRK-VKN--EEGE-LYAQ--ENGLSFLETSAKSAH 158 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~~--~~~~-~~~~--~~~~~~~~~s~~~~~ 158 (199)
++++|.+....... ..++..+... +.|. ++++||.|+.+... ... .... .+.. ..+.+++.+||+++-
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999875433222 2344444333 4554 45999999864221 111 1111 1221 134689999999863
No 294
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.4e-12 Score=104.21 Aligned_cols=161 Identities=21% Similarity=0.230 Sum_probs=105.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcc----ceeEEEEE--------E----EeCCeEEEEEEEeCCCcccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI----GAAFFTQV--------L----SLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~----~~~~~~~~--------~----~~~~~~~~v~l~d~~g~~~~ 72 (199)
...-++|+|+...|||-|++.+-+.+........+ +-+++... + .....-.-+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 45668999999999999999998755543333322 22222211 0 00111223779999999999
Q ss_pred cccccccccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-------------CCHH
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-------------VKNE 136 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~ 136 (199)
..+.......||++|+|+|+... .+.+. ++.++ ..+.|+||++||+|..-.+. ....
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHH----HHHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 99999999999999999999743 22332 23333 35889999999999632110 0000
Q ss_pred HHHHHHHH------------hC-------------CcEEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103 137 EGELYAQE------------NG-------------LSFLETSAKSAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 137 ~~~~~~~~------------~~-------------~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~ 176 (199)
...+|... +| +.++++||..|+||.+++-+|+++....+-
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 11111111 11 357899999999999999999998877653
No 295
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.39 E-value=1.4e-11 Score=92.17 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=116.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe--CCeEEEEEEEeCCCcccccccccccccCC---
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL--NEVTIKFDIWDTAGQERYHSLAPMYYRGA--- 83 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~l~d~~g~~~~~~~~~~~~~~~--- 83 (199)
..-+|+|+|..|+|||||+.+|.+.. ......+..|....+.- .+...++.+|-.-|..-+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 46689999999999999999997654 34455555554444433 23446788898888776666655544433
Q ss_pred -CEEEEEEECCCHH-HHHHHHHHHHHHHHhC----C--------------------------------------------
Q 029103 84 -AAAVVVYDITSMD-SFERAKKWVQELQRQG----N-------------------------------------------- 113 (199)
Q Consensus 84 -d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~----~-------------------------------------------- 113 (199)
-++|++.|+++|. .++.+++|...+.++. .
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 3789999999994 5688888877654211 0
Q ss_pred -------------CCceEEEEEeCCCCcc----cccC-------CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 114 -------------PNLIMFLVANKVDLEE----KRKV-------KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 114 -------------~~~p~ivv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
-++|++||.+|+|... +.+. -....+.||..+|...+.+|++...|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 0489999999999832 1111 122357788889999999999999999999999988
Q ss_pred HHHhh
Q 029103 170 RLAEV 174 (199)
Q Consensus 170 ~~~~~ 174 (199)
...-.
T Consensus 288 r~yG~ 292 (473)
T KOG3905|consen 288 RSYGF 292 (473)
T ss_pred HhcCc
Confidence 87543
No 296
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.38 E-value=6.1e-13 Score=97.23 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=67.4
Q ss_pred EEEEEEEeCCCccc-cc-----ccccccccC--CCEEEEEEECCCH---HHH-HHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103 58 TIKFDIWDTAGQER-YH-----SLAPMYYRG--AAAAVVVYDITSM---DSF-ERAKKWVQELQRQGNPNLIMFLVANKV 125 (199)
Q Consensus 58 ~~~v~l~d~~g~~~-~~-----~~~~~~~~~--~d~~i~v~d~~~~---~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~ 125 (199)
.+...++||||+-+ |. .+....+.. .-+++||+|.... .+| ..+.+....+ +....|+++++||.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil---yktklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL---YKTKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH---HhccCCeEEEEecc
Confidence 35678999999642 21 122111222 2367778876432 222 2222222222 24689999999999
Q ss_pred CCcccccCCH----H----HHHH---------H---------HHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 126 DLEEKRKVKN----E----EGEL---------Y---------AQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 126 D~~~~~~~~~----~----~~~~---------~---------~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
|+.+.....+ . ++.. + .-..++..+.+|+.+|.|++++|..+-+.+.+....
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 9864221110 0 0000 0 001246789999999999999999998887766544
No 297
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.37 E-value=3e-12 Score=89.43 Aligned_cols=151 Identities=20% Similarity=0.175 Sum_probs=88.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcc-----------------ceeEEEEEE------------------Ee
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTI-----------------GAAFFTQVL------------------SL 54 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~------------------~~ 54 (199)
-+.|.|.|++|||||+|+.+++..--.......+ +......+. ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4899999999999999999987622111000001 111000000 00
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK 134 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 134 (199)
.+....+.|++..|. -- ..-++.-..+.-|+|+|++..+-.. ++-.+.+. ..-++|+||.|+......+
T Consensus 93 ~~~~~Dll~iEs~GN-L~--~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~d 161 (202)
T COG0378 93 DFPDLDLLFIESVGN-LV--CPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGAD 161 (202)
T ss_pred cCCcCCEEEEecCcc-ee--cccCcchhhceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCcc
Confidence 111134556666661 10 1111112233889999998653211 11111111 1348999999998766665
Q ss_pred HHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103 135 NEEGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
.+.....+++. +.+++++|.++|+|++++++|+....
T Consensus 162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 56666666654 57899999999999999999987654
No 298
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=2.4e-12 Score=110.62 Aligned_cols=117 Identities=16% Similarity=0.131 Sum_probs=79.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC--C--------------CCcCccceeEEEEEEEe--------------CCe
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF--D--------------FQESTIGAAFFTQVLSL--------------NEV 57 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~~ 57 (199)
..-.+|+|+|+.++|||||+++|+...-. . +.....++......+.. ...
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 44679999999999999999999863310 0 00111111111111111 223
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.+.++++|||||..|.......+..+|++|+|+|+.++-..... ..+..+. ..+.|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHH---HCCCCEEEEEECCccc
Confidence 67889999999999988888888999999999999876433332 3333333 3478899999999986
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-11 Score=98.04 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=105.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHh--------------------CCC---------CCCCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVK--------------------GQF---------FDFQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~ 57 (199)
+...+..+++|+..+|||||+.+|+- +.. ....++..+++-......++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 34689999999999999999999876 100 1112333455566666777777
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---HH---HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SF---ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
...++|.|+|||..|...+-.-...+|+.++|+|++-.. .| .+.++....++... -..++|++||.|+.+=.
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 788999999999999888888888999999999998431 11 23334444444443 34478889999987522
Q ss_pred cCCHHH----HHHHH-HHhC-----CcEEEeccCCCCCHHHH
Q 029103 132 KVKNEE----GELYA-QENG-----LSFLETSAKSAHNVNEL 163 (199)
Q Consensus 132 ~~~~~~----~~~~~-~~~~-----~~~~~~s~~~~~~v~~~ 163 (199)
+.-.++ ...|. ...| +.++++|+..|+|+...
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 221222 12222 3333 46999999999986544
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=7.5e-12 Score=106.29 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=76.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCC--------------cCccceeEEE--EEEEeCCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ--------------ESTIGAAFFT--QVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~--------------~~~~~~~~~~--~~~~~~~~~~~v~l~d~~g~~ 70 (199)
.-.+|+++|+.++|||||+++|+...- .... ...+++.... ...........+.|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 456899999999999999999985321 1000 0011111111 111224457889999999999
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.|.......+..+|++++|+|+...-..+. ...+...... +.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc---CCCeEEEEECchhh
Confidence 888777888899999999999886532222 2233332222 45678999999975
No 301
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.35 E-value=2.9e-11 Score=93.68 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc--
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH-- 73 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~-- 73 (199)
++|+++|.|+||||||+|+|++........+..+.+.......+.+. ..++.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987643333333333333334444332 1358999999964321
Q ss_pred --ccc---cccccCCCEEEEEEECC
Q 029103 74 --SLA---PMYYRGAAAAVVVYDIT 93 (199)
Q Consensus 74 --~~~---~~~~~~~d~~i~v~d~~ 93 (199)
.+. -..++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 12367899999999984
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=99.34 E-value=4.2e-12 Score=108.96 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=77.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCC------------cCccceeEEE--EEEEeC--------CeEEEEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ------------ESTIGAAFFT--QVLSLN--------EVTIKFDI 63 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~------------~~~~~~~~~~--~~~~~~--------~~~~~v~l 63 (199)
....+|+++|+.++|||||+++|+...- .... +...+++... ..+... .....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3456999999999999999999986221 0000 0001111111 112221 22577999
Q ss_pred EeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 64 WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 64 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
+||||+..|.......+..+|++|+|+|+.+.-.... ...+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999999888777888899999999999987533222 334444433 357899999999986
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.31 E-value=1.8e-11 Score=94.84 Aligned_cols=158 Identities=17% Similarity=0.203 Sum_probs=76.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccce--eEEEEEEEeCCeEEEEEEEeCCCcccccccccc-----ccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGA--AFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM-----YYR 81 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~-----~~~ 81 (199)
..++|+|+|.+|+|||||+|+|-|-...+......+. +..............+.+||.||..-....... -+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~ 113 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY 113 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence 5789999999999999999999763322211111111 111111111122235889999997543322222 256
Q ss_pred CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCc--cc-----ccCCHH----HHHHHHHH----h
Q 029103 82 GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE--EK-----RKVKNE----EGELYAQE----N 145 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~-----~~~~~~----~~~~~~~~----~ 145 (199)
..|.+|++.+- .+... ..+...+... +.|+++|-||+|.. +. ....+. +.++.+.. .
T Consensus 114 ~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 114 RYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp G-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 67888877762 23222 2444555554 77899999999961 11 111111 11222211 1
Q ss_pred C---CcEEEeccCCC--CCHHHHHHHHHHHHHh
Q 029103 146 G---LSFLETSAKSA--HNVNELFYEIAKRLAE 173 (199)
Q Consensus 146 ~---~~~~~~s~~~~--~~v~~~~~~l~~~~~~ 173 (199)
+ -++|.+|..+- .++..+.+.|...+..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 2 35899998874 4577777777766654
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.30 E-value=2.4e-10 Score=88.95 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=97.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC----CCCC----------CCcCccc---eeEE--------EEEEEeCCeEEEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG----QFFD----------FQESTIG---AAFF--------TQVLSLNEVTIKFDI 63 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~----~~~~----------~~~~~~~---~~~~--------~~~~~~~~~~~~v~l 63 (199)
-++-|+|+|+.++|||||+|++.+. ...+ ...+..+ ++.. ......++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3688999999999999999999986 2221 1122233 1111 112222455678999
Q ss_pred EeCCCccccccc-----------------------------cccccc-CCCEEEEEE-ECC-----CHHHHHHHHHHHHH
Q 029103 64 WDTAGQERYHSL-----------------------------APMYYR-GAAAAVVVY-DIT-----SMDSFERAKKWVQE 107 (199)
Q Consensus 64 ~d~~g~~~~~~~-----------------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~ 107 (199)
+||+|......+ ....+. .+++.++|. |.+ .....+.-.+++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999994321110 122344 788888888 764 11222333567777
Q ss_pred HHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC--CCCHHHHHHHHHHH
Q 029103 108 LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEIAKR 170 (199)
Q Consensus 108 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~~~~l~~~ 170 (199)
+++. ++|+++++|+.|..... .......+...++.+++.+|+.+ .+.+..+++.+...
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 7654 88999999999943222 34445666777889988888654 34565655554433
No 305
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-11 Score=87.71 Aligned_cols=157 Identities=18% Similarity=0.315 Sum_probs=92.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccc-----cccccccCC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHS-----LAPMYYRGA 83 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~-----~~~~~~~~~ 83 (199)
.-||+++|.+|+||||+--.+..+.. .......+-++....-.... ++..+.+||++|++.+-+ .....+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 45899999999999998655553321 11122222222222222222 346789999999885432 345678999
Q ss_pred CEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHH----HHHHHHhCCcEEEecc
Q 029103 84 AAAVVVYDITSMDS---FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEG----ELYAQENGLSFLETSA 154 (199)
Q Consensus 84 d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~----~~~~~~~~~~~~~~s~ 154 (199)
+++++|||+...+- ++..++.++.+.+. .|...+.+..+|.|+..... ....+. ..+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999987643 33444555555554 46666788899999964332 112222 2222234456778877
Q ss_pred CCCCCHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAK 169 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~ 169 (199)
.+ +.+=+.|..+..
T Consensus 162 wD-etl~KAWS~iv~ 175 (295)
T KOG3886|consen 162 WD-ETLYKAWSSIVY 175 (295)
T ss_pred hh-HHHHHHHHHHHH
Confidence 66 333333443333
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.26 E-value=1.6e-12 Score=96.04 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=56.1
Q ss_pred EEEEEeCCCcccccccccccc--------cCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 60 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
...++||||+.+....+.... ...-++++++|..-... ...+-.++..+.....-+.|.+.++||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 577999999977654443322 33447788888763221 222222232222222348899999999999752
Q ss_pred ccCC--------------------HHHHHHHHHH---hC-C-cEEEeccCCCCCHHHHHHHHHHHH
Q 029103 131 RKVK--------------------NEEGELYAQE---NG-L-SFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 131 ~~~~--------------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
. .. ......++.. .+ . .++++|+.+++|+.+++..|-+.+
T Consensus 172 ~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 2 00 0001111111 12 3 699999999999999998876654
No 307
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=8.3e-11 Score=98.16 Aligned_cols=125 Identities=22% Similarity=0.161 Sum_probs=92.0
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCcCccceeEEEEEEEeCCe-EEEEEE
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF----------------DFQESTIGAAFFTQVLSLNEV-TIKFDI 63 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~v~l 63 (199)
|++......-.+|.|+|+-++|||||.++|+-..-. .......+++.......+.+. .+.+++
T Consensus 1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNl 80 (697)
T COG0480 1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINL 80 (697)
T ss_pred CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEE
Confidence 555555667889999999999999999998862110 001122355556666666666 499999
Q ss_pred EeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 64 WDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 64 ~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
+|||||-.|.......++-+|++++|+|+.+.-..+.-..|.+.. ..+.|.++++||.|...
T Consensus 81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence 999999999988888899999999999998764334434444333 35788999999999764
No 308
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.26 E-value=6.2e-11 Score=88.97 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=53.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc----
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH---- 73 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~---- 73 (199)
|+++|.|+||||||+|+|++........+..+.+.......+.+. ..++.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987654333344433444434444332 2358999999964221
Q ss_pred cccc---ccccCCCEEEEEEECC
Q 029103 74 SLAP---MYYRGAAAAVVVYDIT 93 (199)
Q Consensus 74 ~~~~---~~~~~~d~~i~v~d~~ 93 (199)
.+.. ..++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1111 2357899999999874
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.26 E-value=8e-11 Score=90.18 Aligned_cols=105 Identities=21% Similarity=0.071 Sum_probs=64.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 137 (199)
.+.+.|+||+|..... ...+..+|.++++..... -+.+..+...+ ...|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678899999854222 224566788887754332 33333333333 245579999999987533211100
Q ss_pred H------HHHHH---HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 138 G------ELYAQ---ENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 138 ~------~~~~~---~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
. ..+.. .+..+++++|++++.|+++++++|.+....
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~ 239 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTF 239 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 0 11111 123468999999999999999999987553
No 310
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.24 E-value=1.7e-10 Score=87.25 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=76.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC----------cCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-----
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----- 73 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----- 73 (199)
..++|+|+|.+|+|||||+|.|++....... ..+..+........-++..+.+.++||||.....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4789999999999999999999985543321 1222333344445557788999999999932110
Q ss_pred --------------------cccc--ccccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 74 --------------------SLAP--MYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 74 --------------------~~~~--~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
...+ ..=...|+.+|.++.+... +..+ ...++.+ ....++|-|+.|.|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL----SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh----cccccEEeEEecccccCH
Confidence 0011 1123457899999976421 2111 2344444 456778999999998653
Q ss_pred ccCC--HHHHHHHHHHhCCcEEEeccC
Q 029103 131 RKVK--NEEGELYAQENGLSFLETSAK 155 (199)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~s~~ 155 (199)
.+.. ..........+++.+|.....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S------
T ss_pred HHHHHHHHHHHHHHHHcCceeeccccc
Confidence 3322 222344445677777664433
No 311
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.24 E-value=9.9e-11 Score=86.99 Aligned_cols=107 Identities=20% Similarity=0.118 Sum_probs=69.0
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 137 (199)
++.+.+++|.|..+.... ...-+|.+++|.-..-.+..+.++.=+-++. -++++||.|......--...
T Consensus 143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAAREL 211 (323)
T ss_pred CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHHH
Confidence 456888899886443322 3345888888887666666666654444442 38899999965432111111
Q ss_pred HHHHHH--------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 138 GELYAQ--------ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 138 ~~~~~~--------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
...+.. .+.-+++.+|+..|+|++++|+.|.++..-..
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 111111 12357999999999999999999999886543
No 312
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-10 Score=89.41 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=84.7
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 125 (199)
....+.++|.+|+.....-|..+|.+++++|+|+++++- ..+.+...+++.+.+.. ..+.++++++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 346788999999999999999999999999999999853 22444445666666554 4789999999999
Q ss_pred CCcccc---------------cCCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 126 DLEEKR---------------KVKNEEGELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 126 D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
|+.++. .....++..+... ..+.+..+.|.+..+|+.+|+.+.+.+...
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 983211 1223333333221 124456778889999999999988888664
No 313
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.3e-10 Score=90.36 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=107.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
-|+-.|+-..|||||+..+.+.... .......+++..............+.|+|.||++++-...-..+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 5788999999999999999875433 112333444444444444444558899999999988877777777899999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH--HHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA--QENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
+.++.-. .+..+.+..+.... ...-+|++||.|..+...........+. ...+.+++.+|+++|+|++++-+.|.
T Consensus 82 ~~deGl~-~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~ 158 (447)
T COG3276 82 AADEGLM-AQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELI 158 (447)
T ss_pred eCccCcc-hhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHH
Confidence 9865421 22233334343332 2225899999999865433222211111 13356789999999999999999999
Q ss_pred HHHH
Q 029103 169 KRLA 172 (199)
Q Consensus 169 ~~~~ 172 (199)
+...
T Consensus 159 ~L~~ 162 (447)
T COG3276 159 DLLE 162 (447)
T ss_pred Hhhh
Confidence 9885
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.21 E-value=1.1e-11 Score=90.69 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=86.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC----------------------CCCCCcCcc----ceeEEEEEEEeCC------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ----------------------FFDFQESTI----GAAFFTQVLSLNE------ 56 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~----------------------~~~~~~~~~----~~~~~~~~~~~~~------ 56 (199)
....|.|.|+||+|||||++.|...- +........ ....+.+-..-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 46799999999999999999987611 000000000 0011222221111
Q ss_pred ------------eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103 57 ------------VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124 (199)
Q Consensus 57 ------------~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (199)
.++.+.+++|.|...... ....-+|.+++|....-.+..+.++.-+-++. -++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence 145577888877432221 23456899999999876666666554333332 3899999
Q ss_pred CCCcccccCCHHHHHHHH--H----HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 125 VDLEEKRKVKNEEGELYA--Q----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~--~----~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.|.......-......+. . .+..+++.+||.++.|++++++.|.++....
T Consensus 177 aD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 177 ADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 996543322111111111 1 1235899999999999999999998876443
No 315
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.4e-10 Score=83.53 Aligned_cols=165 Identities=22% Similarity=0.302 Sum_probs=104.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc---ccccccCCCEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL---APMYYRGAAAA 86 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~---~~~~~~~~d~~ 86 (199)
..+|+++|...+||||+-+.....-.+.+.-....+.... .-.+....+.+.+||.||+..+... ....++++-++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~-~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKIT-RDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCccc-HhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 4569999999999999988766433222111111111111 1112335677899999998766543 35568999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCccccc-------CCHHHHHHHHH----HhCCcEEEec
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRK-------VKNEEGELYAQ----ENGLSFLETS 153 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~----~~~~~~~~~s 153 (199)
++|+|+.+ +.++.+.++...+..-. ++++.+-|.+.|+|..+... +......+++. ...+.|+.+|
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999876 34566655555554432 58888889999999754221 11111222222 1234678888
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
..+ .++-|.|..+.+.+..+.|-
T Consensus 185 IyD-HSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred ecc-hHHHHHHHHHHHHHhhhchh
Confidence 776 67889999999888877654
No 316
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.20 E-value=2.1e-10 Score=80.52 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=42.0
Q ss_pred EEEEeCCCccc----ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 029103 61 FDIWDTAGQER----YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKV 125 (199)
Q Consensus 61 v~l~d~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 125 (199)
+.|+|+||... +...+..++..+|++|+|.+.+....-.....+....... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 77999999743 3355677889999999999998765444444444433322 33388888984
No 317
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.19 E-value=2.7e-11 Score=90.63 Aligned_cols=158 Identities=19% Similarity=0.143 Sum_probs=102.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--ccccccc------ccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--RYHSLAP------MYY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--~~~~~~~------~~~ 80 (199)
...-|.++|-.++|||||+++|.+....+...-..+.+..........+ ..+.+.||-|.- -...+.. .-.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 4567899999999999999999976554433333333333333333333 357789999942 1112211 125
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEE----EEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMF----LVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i----vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
..+|.++.|.|++.|+.-.+....+..+.+..-+..|.+ =|-||+|..+...-. .+++ -+.+|+++
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------EKNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------ccCC--cccccccc
Confidence 789999999999999876665566666666654444433 345777764321110 0122 58899999
Q ss_pred CCCHHHHHHHHHHHHHhhCCC
Q 029103 157 AHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~~~~~ 177 (199)
|+|+.++.+.+-..+......
T Consensus 326 gdgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVASETTV 346 (410)
T ss_pred CccHHHHHHHHHHHhhhhhee
Confidence 999999999998888765433
No 318
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.19 E-value=3.7e-10 Score=92.56 Aligned_cols=120 Identities=11% Similarity=0.129 Sum_probs=70.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE-EEEEEeCCeEEEEEEEeCCCcccccc-------c---c
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEVTIKFDIWDTAGQERYHS-------L---A 76 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~l~d~~g~~~~~~-------~---~ 76 (199)
...++|+|+|.+|+||||++|+|++...........+++.. ...... .+..+.++||||...... + .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 45789999999999999999999987543322221222222 111222 246789999999764321 1 1
Q ss_pred ccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcc
Q 029103 77 PMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEE 129 (199)
Q Consensus 77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 129 (199)
..++. ..|++++|..++.......-..++..+....+ .-..+||++|+.|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11323 57999999887532221111234444433322 1233799999999764
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2e-10 Score=85.04 Aligned_cols=171 Identities=15% Similarity=0.179 Sum_probs=107.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC----------C---C-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ----------F---F-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~----------~---~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|..+|+-..|||||..++..-- + . .......++++......+.-.....-..|+|||..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 3579999999999999999998877610 0 0 111223344444444445555556778899999999
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHhCC-
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENGL- 147 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~- 147 (199)
-..+-.-..+.|+.|+|+.++|. .+.+.++.+...++. +.| +++++||+|+.+..+. -+.+..++..+++.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 87777777889999999999874 244444444444443 443 5677899999864332 23445666667764
Q ss_pred ----cEEEeccCC-CCC---HHHHHHHHHHHHHhhCCCCCCC
Q 029103 148 ----SFLETSAKS-AHN---VNELFYEIAKRLAEVNPSRQTG 181 (199)
Q Consensus 148 ----~~~~~s~~~-~~~---v~~~~~~l~~~~~~~~~~~~~~ 181 (199)
|++.-|+.. .+| ..+-+..|.+.+-...|.+.+.
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 567777654 233 3333334444444444444443
No 320
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.15 E-value=5.5e-09 Score=75.97 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------cccccccC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRG 82 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~~~~~~~~ 82 (199)
..+|+++|.|.+|||||+-.+...............+.....+.+++ -.+++.|.||+-+-.+ ..-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 67899999999999999998876443322222222233333344444 4577999999643322 22345678
Q ss_pred CCEEEEEEECCCHHHHHHH-HHHHHHHHHh---CCC--------------------------------------------
Q 029103 83 AAAAVVVYDITSMDSFERA-KKWVQELQRQ---GNP-------------------------------------------- 114 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~---~~~-------------------------------------------- 114 (199)
+|.++.|.|++..+....+ .+.+..+--. ..+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999976544322 2222222100 011
Q ss_pred ------------------CceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 115 ------------------NLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 115 ------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
..+.+.|-||+|. ++.++...+++..+. +.+|+.-.-|++.+++.|++.+.-
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhce
Confidence 1556677788874 446666777777665 566777778999999999988754
No 321
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.14 E-value=5e-10 Score=82.52 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=42.4
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103 59 IKFDIWDTAGQERY-------------HSLAPMYYR-GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANK 124 (199)
Q Consensus 59 ~~v~l~d~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (199)
..+.++|+||.... ..+...|+. ..+++++|+|+...-.-.....+...+. ..+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 45889999997421 123445666 4458899998764322222223333332 357789999999
Q ss_pred CCCcc
Q 029103 125 VDLEE 129 (199)
Q Consensus 125 ~D~~~ 129 (199)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99865
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.14 E-value=2.5e-10 Score=85.78 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred ceEEEEEeCCCCcccccCCHHHHHHHHHH--hCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 116 LIMFLVANKVDLEEKRKVKNEEGELYAQE--NGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 116 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
.+-++|+||+|+.+.............+. .+.+++.+|+++|+|++++++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 33599999999965322122223333333 35789999999999999999999774
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.5e-10 Score=91.22 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=82.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-----------------CccceeEEEEEEEe---CCeEEEEEEEeCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-----------------STIGAAFFTQVLSL---NEVTIKFDIWDTA 67 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~v~l~d~~ 67 (199)
..-.+|+++|+-++|||+|++.|.....+.... ...++.....+..+ .+..+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 457899999999999999999998754432211 11111122222222 4566779999999
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (199)
||..|.......++.+|++++|+|+.+.-.+.. .++++... ..+.|+++|+||+|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHH
Confidence 999998888888999999999999987654444 23333332 357889999999996
No 324
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=8.3e-09 Score=79.28 Aligned_cols=85 Identities=16% Similarity=0.093 Sum_probs=57.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEe----------------CCeEEEEEEEeCCCccc--
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSL----------------NEVTIKFDIWDTAGQER-- 71 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~v~l~d~~g~~~-- 71 (199)
.++++|+|.|+||||||+|+++.........|..+++.......+ .-....+.++|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999987644344444444332222222 12345688999998532
Q ss_pred --cccccccc---ccCCCEEEEEEECCC
Q 029103 72 --YHSLAPMY---YRGAAAAVVVYDITS 94 (199)
Q Consensus 72 --~~~~~~~~---~~~~d~~i~v~d~~~ 94 (199)
-..+-..| ++++|+++.|++..+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 22333333 688999999999873
No 325
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.07 E-value=5.8e-09 Score=79.72 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=88.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC----------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---c
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF----------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---S 74 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---~ 74 (199)
...++|+++|+.|.|||||+|.|++...... ..++..+......+.-++..+.++++||||...+- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4589999999999999999999998643322 12334445555566667888999999999943211 1
Q ss_pred cc----------------------cc-c--ccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 75 LA----------------------PM-Y--YRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 75 ~~----------------------~~-~--~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.| +. . =..+++.+|.+..+. +.+..+ ...+..+... ..+|-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~~----vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSKR----VNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhcc----cCeeeeeeccccC
Confidence 11 11 1 133578888887663 333333 3555555443 3367788899986
Q ss_pred ccccC--CHHHHHHHHHHhCCcEEE
Q 029103 129 EKRKV--KNEEGELYAQENGLSFLE 151 (199)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~ 151 (199)
...+. -..........+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 53322 223345556678888885
No 326
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.06 E-value=2.4e-09 Score=85.00 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=78.5
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM----------DSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 125 (199)
....+.++|++|+.....-|..++.+++++|||+++++- ..+.+...++..+.... ..+.|+++++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 445678999999999999999999999999999998742 23444455555555543 3689999999999
Q ss_pred CCccc----------------cc--CCHHHHHHHHHH------------hCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 126 DLEEK----------------RK--VKNEEGELYAQE------------NGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 126 D~~~~----------------~~--~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
|+..+ .. .....+..+... ..+.+..++|.+.+.+..+|+.+.+-
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 97320 01 223334333322 12245688888888888888887654
No 327
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.05 E-value=7.7e-10 Score=88.08 Aligned_cols=161 Identities=23% Similarity=0.393 Sum_probs=118.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
-+++|+.|+|..++|||+|+++++.+.+.....+. -..+..++..++....+.+.|.+|... ..|-..+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 46899999999999999999999988877644432 235566666777777888888888432 34567799999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcc--cccCCHHHH-HHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEE--KRKVKNEEG-ELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+||.+-+..+++.+..+...+..+.. ..+|++.++++.-... .+.+.+.++ ...++...+.||+.++-.|-++..+
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 99999999999998877766654433 5667777776654322 223333444 4444445688999999999999999
Q ss_pred HHHHHHHHHhhC
Q 029103 164 FYEIAKRLAEVN 175 (199)
Q Consensus 164 ~~~l~~~~~~~~ 175 (199)
|+.+...+....
T Consensus 181 f~~~~~k~i~~~ 192 (749)
T KOG0705|consen 181 FQEVAQKIVQLR 192 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999988886653
No 328
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.5e-08 Score=78.01 Aligned_cols=145 Identities=13% Similarity=0.201 Sum_probs=89.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-----
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH----- 73 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~----- 73 (199)
...++++++|.+|.|||||+|.|+...+... ...+..+......+.-++..+.++++||||....-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4579999999999999999999998643321 12233444445555557788899999999932110
Q ss_pred --------------------cccccccc--CCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 74 --------------------SLAPMYYR--GAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 74 --------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
.+.+..+. .+++.+|.+..+. ..+..+ ...+..+. ....+|-|+-|.|....
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh----ccccccceeeccccCCH
Confidence 11222233 5678888888663 223332 24444443 34456777889998653
Q ss_pred ccCC--HHHHHHHHHHhCCcEEEeccCCC
Q 029103 131 RKVK--NEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
.+.. ..........+++++|.......
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 3322 23345555667888777665544
No 329
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=7.1e-09 Score=78.38 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=111.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHh----------CCCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVK----------GQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
..+.++|.-+|+-..|||||--++.. ..+. ...+...++++....+-+.-.....--.|+|||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45799999999999999999887765 0111 111233345555555555544555667899999999
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc---cCCHHHHHHHHHHhC---
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR---KVKNEEGELYAQENG--- 146 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~--- 146 (199)
-..+-.-..+-|+.|+|+.++|. .+.+.++.+...++..- ..++|.+||.|+.+.. +.-+.+.+++..+++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 87777777788999999999984 36666666666555533 3367788999997432 223344566666665
Q ss_pred --CcEEEeccC---CCCC---HHHHHHHHHHHHHhhCCCCCCCC
Q 029103 147 --LSFLETSAK---SAHN---VNELFYEIAKRLAEVNPSRQTGM 182 (199)
Q Consensus 147 --~~~~~~s~~---~~~~---v~~~~~~l~~~~~~~~~~~~~~~ 182 (199)
+|++.-||+ .|.+ =.+....|++.+-..-|.+.+..
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~ 251 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDL 251 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccccc
Confidence 467777755 3422 12334455555555555544443
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=3.8e-09 Score=75.76 Aligned_cols=94 Identities=28% Similarity=0.225 Sum_probs=65.0
Q ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhC
Q 029103 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENG 146 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 146 (199)
+...+..+++.+|++++|+|++++.. .|...+... ..+.|+++|+||+|+..... .......+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 45667788999999999999987531 122222222 34678999999999865332 222233332 2233
Q ss_pred C---cEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 147 L---SFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 147 ~---~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
. .++.+|+++++|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999999998774
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.93 E-value=2.3e-09 Score=74.42 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=63.5
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEec
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.+++....++|++++|+|++++..... ..+...+. ..+.|+++++||+|+.+.... .....+....+.+++.+|
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence 345566778999999999987643222 12222222 236789999999998543211 111123334567899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 029103 154 AKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~ 173 (199)
++++.|++++++.|.+.+..
T Consensus 78 a~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 78 AKERLGTKILRRTIKELAKI 97 (156)
T ss_pred ccccccHHHHHHHHHHHHhh
Confidence 99999999999999887753
No 332
>PRK12289 GTPase RsgA; Reviewed
Probab=98.93 E-value=7.2e-09 Score=80.69 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=66.8
Q ss_pred ccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEe
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 152 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (199)
.+....+.++|.+++|+|+.++. ....+.+|+.... ..++|+++|+||+|+.+..+. .........+++.++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence 44455689999999999998765 3345556665543 357889999999999643221 12223334678899999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 029103 153 SAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~ 170 (199)
|++++.|++++++.|...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999888654
No 333
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.91 E-value=3.9e-09 Score=72.06 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
+++++|.+|+|||||+|+|.+..... .....+.+.......++. .+.+|||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 89999999999999999999766442 333344555555555543 46899999963
No 334
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.90 E-value=8.4e-09 Score=78.57 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=66.9
Q ss_pred cccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103 77 PMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (199)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (199)
...+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+..+ ...........+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34588999999999999887 77777778776654 3678999999999965321 122233344578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 029103 156 SAHNVNELFYEIAK 169 (199)
Q Consensus 156 ~~~~v~~~~~~l~~ 169 (199)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887764
No 335
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.87 E-value=7.6e-09 Score=72.83 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=41.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
..++|+++|.|++|||||+|+|.+..... .....+++......... ..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 35899999999999999999999765432 34445555555554443 25789999994
No 336
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=6.2e-08 Score=70.10 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=87.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc---c
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH---S 74 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~---~ 74 (199)
...+++|+|+|.+|.|||||+|.|........ ...+..+......+.-.+...+++++||||....- .
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 35689999999999999999999987543321 11112222233333346677889999999943211 1
Q ss_pred c-----------------------ccccccC--CCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 75 L-----------------------APMYYRG--AAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 75 ~-----------------------~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
. .+..++. ++..+|.+..+ ..++..+ ..+++.+.+. ..++-|+-|.|-.
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~v----vNvvPVIakaDtl 197 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTEV----VNVVPVIAKADTL 197 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhhh----heeeeeEeecccc
Confidence 1 1222332 34556666555 3444433 2444444333 2367777799965
Q ss_pred ccccCC--HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 129 EKRKVK--NEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 129 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
..++.. .+....-...+++.+|+-.+.+.+.=+..++.
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 322111 12233333457888888777775554444443
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=9.1e-09 Score=71.51 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=38.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
..++|+++|.||||||||+|+|.+..... .....+.+.....+.... .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcCC
Confidence 36789999999999999999998754322 233344444444444332 3669999994
No 338
>PRK00098 GTPase RsgA; Reviewed
Probab=98.84 E-value=1.4e-08 Score=77.74 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=63.0
Q ss_pred cccCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
.+.++|.+++|+|+.++..... +.+|+..+.. .++|+++|+||+|+.+..+ ............+.+++.+|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999988765433 3566665543 4788999999999963222 122233444566889999999999
Q ss_pred CCHHHHHHHHH
Q 029103 158 HNVNELFYEIA 168 (199)
Q Consensus 158 ~~v~~~~~~l~ 168 (199)
+|++++++.|.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998764
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.80 E-value=4.1e-08 Score=76.45 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=66.1
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC-CHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV-KNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
..++|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+.... ............+.+++.+|+++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 467999999999987778888888877553 246788999999999653211 1122223344568899999999999
Q ss_pred CHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKR 170 (199)
Q Consensus 159 ~v~~~~~~l~~~ 170 (199)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988654
No 340
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.79 E-value=7.6e-09 Score=71.37 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~ 73 (199)
-.++++|++|||||||+|.|.+.... ........++.....+.+.... .++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 46799999999999999999985321 1112223333444555554433 488999976543
No 341
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.78 E-value=4e-08 Score=75.56 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=97.4
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC--------------cCccceeEEEEEEEeCCe------------
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--------------ESTIGAAFFTQVLSLNEV------------ 57 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~------------ 57 (199)
+...+.++.|.++|+-+.|||||+-.|..+...+-. .+..+-+......-+++.
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 344567999999999999999999888775543221 111222223333333222
Q ss_pred ---------EEEEEEEeCCCccccccc--ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103 58 ---------TIKFDIWDTAGQERYHSL--APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (199)
Q Consensus 58 ---------~~~v~l~d~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (199)
..-+.|.|+.||+.|-.. .-.+-.+.|..++++.++|.- ....++.+-.+.. -..|++++.||+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~-~~~tkEHLgi~~a---~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV-TKMTKEHLGIALA---MELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc-chhhhHhhhhhhh---hcCCEEEEEEecc
Confidence 124779999999987543 233457789999999988752 2222444444433 3788999999999
Q ss_pred CcccccCCH--HHHHHH----------------------HHHh---CCcEEEeccCCCCCHHHHHH
Q 029103 127 LEEKRKVKN--EEGELY----------------------AQEN---GLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 127 ~~~~~~~~~--~~~~~~----------------------~~~~---~~~~~~~s~~~~~~v~~~~~ 165 (199)
+........ ++...+ +.+. -.|++.+|+.+|+|++-+.+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e 332 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE 332 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence 964322111 111111 1111 14789999999999865443
No 342
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.77 E-value=1.7e-08 Score=72.31 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
..+++++|.+|+|||||+|+|.+.... .......+++.....+.+.. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 458999999999999999999975431 12334445666666665543 4689999994
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.6e-08 Score=74.92 Aligned_cols=120 Identities=18% Similarity=0.286 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-CccceeEEEEEEEeCCe-------------------------------
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAAFFTQVLSLNEV------------------------------- 57 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------- 57 (199)
..=|+++|.=..||||+++.|+.+.++.... +..+++++...+.-+..
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 3458999999999999999999988775443 33333443333221110
Q ss_pred --------EEEEEEEeCCCccc-----------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceE
Q 029103 58 --------TIKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM 118 (199)
Q Consensus 58 --------~~~v~l~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 118 (199)
.-.+.++||||.-+ |....+.|...+|.++++||...-+--++....+..++.+ .--+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---ccee
Confidence 11488999999532 2344567889999999999987655555656666666544 3346
Q ss_pred EEEEeCCCCccccc
Q 029103 119 FLVANKVDLEEKRK 132 (199)
Q Consensus 119 ivv~nK~D~~~~~~ 132 (199)
=||+||.|..+..+
T Consensus 215 RVVLNKADqVdtqq 228 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQ 228 (532)
T ss_pred EEEeccccccCHHH
Confidence 78999999876443
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=4.6e-08 Score=68.93 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=40.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
..++++++|.+|+|||||+++|.+.... ......+++.......+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999976653 223333444444444443 35789999995
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.71 E-value=5.3e-08 Score=76.50 Aligned_cols=95 Identities=29% Similarity=0.331 Sum_probs=67.9
Q ss_pred cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH----HHHHH
Q 029103 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE----LYAQE 144 (199)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 144 (199)
.+.|..+...+...++++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.... ....... .+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 4567777788888999999999997653 23444444432 367899999999986532 2222222 34556
Q ss_pred hCC---cEEEeccCCCCCHHHHHHHHHHH
Q 029103 145 NGL---SFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 145 ~~~---~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998765
No 346
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.70 E-value=1e-07 Score=69.75 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=93.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-------cccccccC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-------LAPMYYRG 82 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-------~~~~~~~~ 82 (199)
..++.++|.|.+|||||+..|.+. +.+ ..+..+.+............-++++.|.||+-+-.. ..-...+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~-~s~-vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGT-FSE-VAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCC-CCc-cccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 358999999999999999998753 222 222233333333333334456788999999643321 22334677
Q ss_pred CCEEEEEEECCCHHHHHHHHH-HHH----------------------------------------HHHHh----------
Q 029103 83 AAAAVVVYDITSMDSFERAKK-WVQ----------------------------------------ELQRQ---------- 111 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~-~~~----------------------------------------~~~~~---------- 111 (199)
++.+++|.|+..|-+-..+-+ .++ +.+.+
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 899999999987644333321 111 10000
Q ss_pred ---------CC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 112 ---------GN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 112 ---------~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
.. ...|.+.++||+|...-++.+ -.+.+ ..+++|+.++.+++++++.+.+.+.-
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd--------ii~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD--------IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceeeeeccc--------eeeeccceeecccccccchHHHHHHHhhcchh
Confidence 00 026667777787754322211 11222 35899999999999999999887743
No 347
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=8.8e-08 Score=73.54 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=90.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc------------------C-----ccceeEEEEEEEe----------C
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE------------------S-----TIGAAFFTQVLSL----------N 55 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~------------------~-----~~~~~~~~~~~~~----------~ 55 (199)
.+++++++|.-.+|||||+-.|..+...+-.. + ..+++-.....++ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 59999999999999999998876633221110 1 1111111112222 1
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 56 EVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 56 ~~~~~v~l~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
....-+.++|.+|+.+|....-..+. ..|..++|++++..-.. ..++.+-.+... ++|+.|+++|.|+.+..-
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~- 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL---NIPFFVLVTKMDLVDRQG- 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh---CCCeEEEEEeeccccchh-
Confidence 12334889999999999865543332 24677888887754322 224444445444 789999999999965321
Q ss_pred CHHHHHHHHH-----------------------------HhCCcEEEeccCCCCCHHHH
Q 029103 134 KNEEGELYAQ-----------------------------ENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 134 ~~~~~~~~~~-----------------------------~~~~~~~~~s~~~~~~v~~~ 163 (199)
.....++++. ..-.|+|.+|..+|+|++-+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1122222221 12247899999999997644
No 348
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.69 E-value=7e-08 Score=73.21 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=41.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
..++++++|.||+|||||+|+|.+..... .....+++.....+.... .+.++||||..
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCcc
Confidence 46899999999999999999999765332 233344454444444432 46899999973
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=9.1e-08 Score=66.47 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=59.1
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
..+..+|++++|+|+.++..-. ...+...+... ..+.|+++|+||+|+.+.... ......+...+....+.+|++++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence 3467899999999998863221 12222333322 345889999999998643221 11222332223333578999999
Q ss_pred CCHHHHHHHHHHHHH
Q 029103 158 HNVNELFYEIAKRLA 172 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~ 172 (199)
.|++++++.|.+.+.
T Consensus 81 ~~~~~L~~~l~~~~~ 95 (157)
T cd01858 81 FGKGSLIQLLRQFSK 95 (157)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999977653
No 350
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=9.3e-08 Score=72.92 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=42.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
..++|+++|.||||||||+|+|.+..... .....+++.....+..+. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 46899999999999999999999765432 234455555554444432 47799999974
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.3e-07 Score=73.30 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=89.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+++-|+|+||||.|||||++.|...- ....... ...-...+.+...++++.++|..- .. +-...+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~-tk~ti~~----i~GPiTvvsgK~RRiTflEcp~Dl--~~-miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF-TKQTIDE----IRGPITVVSGKTRRITFLECPSDL--HQ-MIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH-HHhhhhc----cCCceEEeecceeEEEEEeChHHH--HH-HHhHHHhhheeE
Confidence 467888999999999999999988632 1111110 111122356777889999999431 11 223456689999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH-----HHHH-HhCCcEEEeccC-CCCCH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE-----LYAQ-ENGLSFLETSAK-SAHNV 160 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~-~~~~~~~~~s~~-~~~~v 160 (199)
+.+|.+=.-.++. .++++.+..++.+. ++-|+|+.|+...........+ .+.. ..|+.+|.+|.. +|.--
T Consensus 139 LlIdgnfGfEMET-mEFLnil~~HGmPr--vlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYp 215 (1077)
T COG5192 139 LLIDGNFGFEMET-MEFLNILISHGMPR--VLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYP 215 (1077)
T ss_pred EEeccccCceehH-HHHHHHHhhcCCCc--eEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCC
Confidence 9999875443444 35666666664443 6778899998642211111111 1111 135778888855 44433
Q ss_pred HHHHHHHHHHH
Q 029103 161 NELFYEIAKRL 171 (199)
Q Consensus 161 ~~~~~~l~~~~ 171 (199)
+.-+-.|.+.+
T Consensus 216 DreilnLsRfi 226 (1077)
T COG5192 216 DREILNLSRFI 226 (1077)
T ss_pred CHHHHHHHHHH
Confidence 33333444444
No 352
>PRK12288 GTPase RsgA; Reviewed
Probab=98.66 E-value=6.1e-08 Score=75.50 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=38.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~ 73 (199)
.++++|.+|||||||+|+|.+...... ......++.....+.+.+.. .++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 378999999999999999997532211 11112234444445554333 389999987654
No 353
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.66 E-value=2.9e-06 Score=66.58 Aligned_cols=154 Identities=16% Similarity=0.262 Sum_probs=91.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC--------------CCCCcCccceeEEE----------EEEEe-CCeEEEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQF--------------FDFQESTIGAAFFT----------QVLSL-NEVTIKFDIW 64 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~v~l~ 64 (199)
.+=|+|+||..+|||||++++...-. .+...+..+.+... ..+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 57789999999999999999988111 01111222222222 22333 5678899999
Q ss_pred eCCCcc--------ccc------cccc---------------cccc--CCCEEEEEEECC----CHHHH-HHHHHHHHHH
Q 029103 65 DTAGQE--------RYH------SLAP---------------MYYR--GAAAAVVVYDIT----SMDSF-ERAKKWVQEL 108 (199)
Q Consensus 65 d~~g~~--------~~~------~~~~---------------~~~~--~~d~~i~v~d~~----~~~s~-~~~~~~~~~~ 108 (199)
|+.|.. +-. ..|. ..+. ..-++++.-|.+ .++.+ +.-.+...++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999821 100 1111 1111 123666666655 12333 2223555555
Q ss_pred HHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC--CCCHHHHHHHHH
Q 029103 109 QRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS--AHNVNELFYEIA 168 (199)
Q Consensus 109 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~v~~~~~~l~ 168 (199)
+.. ++|++|++|-.+--+ .-....+..+..+++.+++++++.+ .+.+..++..+.
T Consensus 177 k~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 544 888999999988433 2346777888899999999998764 334555554443
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.66 E-value=1.1e-07 Score=65.86 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=39.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
...+++++|.+|+|||||++++.+... ....+..+.+........+. .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 457889999999999999999986442 22344455444333333322 5889999994
No 355
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=1.4e-07 Score=73.51 Aligned_cols=83 Identities=13% Similarity=-0.042 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc-
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH- 73 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~- 73 (199)
++++|+|.|++|||||++.|++... .....+..+.+.....+.+.+. ...+.+.|+||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 3333333323333333444332 2467899999964322
Q ss_pred ---ccc---cccccCCCEEEEEEECC
Q 029103 74 ---SLA---PMYYRGAAAAVVVYDIT 93 (199)
Q Consensus 74 ---~~~---~~~~~~~d~~i~v~d~~ 93 (199)
.+. -..++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 122 23478899999999985
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.65 E-value=7.4e-08 Score=74.47 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=45.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
..++++++|-|+||||||+|+|.+... ....+.++++.....+..+.. +.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 458899999999999999999997654 334555677777777766654 6799999964
No 357
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.64 E-value=4.4e-08 Score=72.26 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=88.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC-ccceeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES-TIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSL 75 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~ 75 (199)
.+....++++|.+++|||||+|.+..........+ ..+. ...++.-..+..+.+.|.||.. .+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~---Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK---TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc---ceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 34578999999999999999999987554322222 3333 3333333444567799999921 12233
Q ss_pred ccccccCCC---EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc----CCHHHHHH-------H
Q 029103 76 APMYYRGAA---AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK----VKNEEGEL-------Y 141 (199)
Q Consensus 76 ~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~-------~ 141 (199)
...|+.+-+ -+++.+|++.+ ++..-. ..+......+.|+.+|+||+|...... -....+.. .
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 344444333 33455555533 111111 111222236899999999999743111 11111111 1
Q ss_pred HHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 142 AQENGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 142 ~~~~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
......+.+.+|+.++.|+++++-.|.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 11223466789999999998887665543
No 358
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.64 E-value=6.2e-07 Score=65.94 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=66.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEeC---CeEEEEEEEeCCCccccccc------c
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLN---EVTIKFDIWDTAGQERYHSL------A 76 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~l~d~~g~~~~~~~------~ 76 (199)
..-.-|.|+|++++|||+|+|.|.+. .+.-.. .....+...+..... +....+.++||+|....... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~-~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD-TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecC-CCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 34567899999999999999999987 443211 111222222222221 23568999999997543221 1
Q ss_pred cccccC--CCEEEEEEECCCH-HHHHHHHHHHHHH---------HHhCCCCceEEEEEeCCCCc
Q 029103 77 PMYYRG--AAAAVVVYDITSM-DSFERAKKWVQEL---------QRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 77 ~~~~~~--~d~~i~v~d~~~~-~s~~~~~~~~~~~---------~~~~~~~~p~ivv~nK~D~~ 128 (199)
...+.. ++.+||..+.... ..++.+....+.. .........+++++...++.
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~ 147 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD 147 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence 222333 7888887776533 3334433333211 11223445567777666553
No 359
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=5.5e-08 Score=73.14 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC------CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ------FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~ 73 (199)
..+++|.+|||||||+|+|.... ..+.......+++....+.++..++ ++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 56899999999999999998632 2233334556667777777754443 88999987654
No 360
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.7e-07 Score=77.57 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=80.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCC------------CC--CCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF------------FD--FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~ 73 (199)
.-.-+|.++.+-..|||||++.|...+- -+ ....+.+++-...-+..-...+.++++|+|||..|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3467899999999999999999987331 11 112223333333444444567889999999999999
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (199)
+.......-+|++++.+|+...-.-+....+.+.+. .+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence 998888899999999999987644333332223232 2344689999999
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.60 E-value=1.4e-07 Score=65.43 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=38.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
...+++++|.||+|||||+|+|.+..... .....+++......... ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 46889999999999999999999754322 22223333333333332 35789999994
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.60 E-value=3.2e-07 Score=63.57 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=55.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
|++++|+|+.++.+... .++.. ......+.|+++|+||+|+.+..+.. .....+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988754432 12221 11123578999999999985432211 1112233334566899999999999999
Q ss_pred HHHHHHHHH
Q 029103 164 FYEIAKRLA 172 (199)
Q Consensus 164 ~~~l~~~~~ 172 (199)
++.|.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999877643
No 363
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.59 E-value=1.3e-07 Score=84.46 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=69.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCC----cCcccee-EEEEEEEeCCeEEEEEEEeCCCcc--------ccccccccc
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAA-FFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY 79 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~ 79 (199)
-+|+|++|+|||||+..- +..++-.. ....+.. ...+...+.+ +..++|++|.- .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 489999999999999874 43332211 0000000 0112222222 35589999932 112234333
Q ss_pred ---------ccCCCEEEEEEECCCH-----H----HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 80 ---------YRGAAAAVVVYDITSM-----D----SFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 80 ---------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
-+..|++|+++|+.+- + ....++..+.++........|++|++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 3568999999998743 1 124556666777777788999999999999864
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=2.8e-07 Score=69.86 Aligned_cols=86 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC---------------eEEEEEEEeCCCcccc-
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE---------------VTIKFDIWDTAGQERY- 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~l~d~~g~~~~- 72 (199)
..++|.|+|.|+||||||+|+|..........+..+++.....+.+.+ ....++++|++|.-.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 578999999999999999999998777666666655555444444422 2456899999985322
Q ss_pred ---ccccc---ccccCCCEEEEEEECCC
Q 029103 73 ---HSLAP---MYYRGAAAAVVVYDITS 94 (199)
Q Consensus 73 ---~~~~~---~~~~~~d~~i~v~d~~~ 94 (199)
..+-. +.++.+|+++-|+++.+
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22322 33688999999988763
No 365
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.4e-06 Score=63.65 Aligned_cols=159 Identities=17% Similarity=0.226 Sum_probs=101.3
Q ss_pred eEEEEEcCCCC--cHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 11 VKLVLLGDMGT--GKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 11 ~~i~v~G~~~~--GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+|-+|+ ||.+|+.+|....+.....+...+.++.+++.-....-.+.+.-.+--+++.-..........+++.
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 45789999999 9999999998877777777777777777776433222222222222212222111222345678999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc--------------c------------------------
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE--------------K------------------------ 130 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------~------------------------ 130 (199)
|||++....+..++.|+....-... -..+.++||+|... .
T Consensus 85 vfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 9999999899999999875321111 11356679998521 0
Q ss_pred ----cc--CCHHHHHHHHHHhCCcEEEeccCCC------------CCHHHHHHHHHHHH
Q 029103 131 ----RK--VKNEEGELYAQENGLSFLETSAKSA------------HNVNELFYEIAKRL 171 (199)
Q Consensus 131 ----~~--~~~~~~~~~~~~~~~~~~~~s~~~~------------~~v~~~~~~l~~~~ 171 (199)
.. .......+++.++++.+++.++.+. .|+..+|+.|...+
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 00 1122346677788899999888543 37888888876554
No 366
>PRK12289 GTPase RsgA; Reviewed
Probab=98.56 E-value=1.5e-07 Score=73.41 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
.++|+|++|||||||+|+|.+...... ......++.....+.+.+.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 379999999999999999996432211 11112244455555554333 58999997643
No 367
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=9.5e-08 Score=71.49 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=100.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcCccceeE-------------------------------EEEE-
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQESTIGAAF-------------------------------FTQV- 51 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~~~~~~~-------------------------------~~~~- 51 (199)
++-.++|.-+|+...||||+++++++-. |-.+.+..+.+.. ....
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3458999999999999999999998721 1111111111110 0000
Q ss_pred EEeCC---eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 52 LSLNE---VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 52 ~~~~~---~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
..+.+ -...+.|.|+|||+.....+-+-..-.|++++.+..+++-...+..+.+..+.-. .-..++++-||+|+.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli 192 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLI 192 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhh
Confidence 00010 1235889999999877655554455568888888777542222222322222211 122378888999997
Q ss_pred ccccCC--HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 129 EKRKVK--NEEGELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 129 ~~~~~~--~~~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
.+++-. .+....|.+. .+.+++++||.-..+++-+.++|...+.....+
T Consensus 193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 544321 1222333332 357899999999999999999888887665443
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.55 E-value=2.1e-07 Score=69.30 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~ 73 (199)
-.++++|.+|||||||+|+|.+...... ......+++....+.+.+. .++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence 3679999999999999999997532211 1112224444444545332 589999976543
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.54 E-value=8.2e-08 Score=73.95 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=77.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC----------CCc-----------CccceeEEEEEEE-------------eC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD----------FQE-----------STIGAAFFTQVLS-------------LN 55 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~~ 55 (199)
.-.|+++|++|+||||++..|...-... .+. ...+..+...... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999887621100 000 0001111110000 01
Q ss_pred CeEEEEEEEeCCCccccccc----ccc--------cccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEE
Q 029103 56 EVTIKFDIWDTAGQERYHSL----APM--------YYRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVA 122 (199)
Q Consensus 56 ~~~~~v~l~d~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~ 122 (199)
...+.+.++||||....... ... .-...+..++|+|++.. +.+.....+. +. -.+.-+|+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~---~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EA---VGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hh---CCCCEEEE
Confidence 23457899999996432211 111 11346788999999853 2233322221 11 12347899
Q ss_pred eCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 123 NKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 123 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
||.|.... .=.+.......++|+..++ +|++++++-
T Consensus 267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 99995432 1123344456689988888 777776653
No 370
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.49 E-value=3.1e-07 Score=64.70 Aligned_cols=91 Identities=23% Similarity=0.148 Sum_probs=60.7
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEec
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 153 (199)
......+.++|.+++|+|+.++..... ..+...+ .+.|+++|+||+|+.+.... .....+....+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 344567889999999999987643221 1122211 34688999999998643211 111122233345689999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 029103 154 AKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~ 172 (199)
++++.|++++.+.|...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999988764
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=8.1e-06 Score=55.83 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=78.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCC-Ccc--------------ccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTA-GQE--------------RYH 73 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~-g~~--------------~~~ 73 (199)
..++|+|.|+||||||||+..+...- ...... --.+...++.-.+...-|.+.|+. |.. .|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~k--vgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL-REKGYK--VGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH-HhcCce--eeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 47899999999999999999887421 111111 112233344445666667777776 311 111
Q ss_pred -----------ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHH
Q 029103 74 -----------SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYA 142 (199)
Q Consensus 74 -----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 142 (199)
...+..++.+|++ ++|=-.+..+.. +.+...+......+.|++.++.+.+- .-..+.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks-~~f~~~ve~vl~~~kpliatlHrrsr-------~P~v~~ik 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKS-KKFREAVEEVLKSGKPLIATLHRRSR-------HPLVQRIK 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhcc-HHHHHHHHHHhcCCCcEEEEEecccC-------ChHHHHhh
Confidence 1122233445544 455444422211 34444455544567887777766552 11223333
Q ss_pred HHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 143 QENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 143 ~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
. .+..|+. .+.+|-+.++..|...+..
T Consensus 151 ~-~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 151 K-LGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred h-cCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 3 3333333 4555556788877776643
No 372
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.48 E-value=5.6e-07 Score=66.04 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=78.5
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH-------HHHHHHHHHHHHHHHh----CCCCceEEEEEe
Q 029103 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM-------DSFERAKKWVQELQRQ----GNPNLIMFLVAN 123 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~----~~~~~p~ivv~n 123 (199)
.-..+.++.+|.+|+.....-|-..+..+.++|+|+..++- .+...+++-+..+++. -...+.+|+.+|
T Consensus 198 qVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLN 277 (379)
T KOG0099|consen 198 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLN 277 (379)
T ss_pred eccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEec
Confidence 33456688999999999999999999999999999987742 1223333333332221 124566899999
Q ss_pred CCCCccc------------------------------ccCCHHHHHHHHHH-------------hCCcEEEeccCCCCCH
Q 029103 124 KVDLEEK------------------------------RKVKNEEGELYAQE-------------NGLSFLETSAKSAHNV 160 (199)
Q Consensus 124 K~D~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~s~~~~~~v 160 (199)
|.|+..+ +......++.+.+. +-+.+.++.|.+.+++
T Consensus 278 KqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenI 357 (379)
T KOG0099|consen 278 KQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 357 (379)
T ss_pred HHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHH
Confidence 9998321 11112223333322 1245677888999999
Q ss_pred HHHHHHHHHHHHhhC
Q 029103 161 NELFYEIAKRLAEVN 175 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (199)
..+|+...+.+.+..
T Consensus 358 rrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 358 RRVFNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998777776643
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=98.47 E-value=2.5e-07 Score=71.63 Aligned_cols=94 Identities=20% Similarity=0.164 Sum_probs=54.0
Q ss_pred EEEEEEeCCCcccccc-c---cccc--ccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 59 IKFDIWDTAGQERYHS-L---APMY--YRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
+.+.++||+|...... + ...+ ..+.|.+++|+|++... ..+....+.. . -.+--+++||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~----~---~~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE----A---VGIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh----c---CCCCEEEEeeecCCCCc
Confidence 4588999999653221 1 1111 23568889999987542 2232222211 1 11247889999975321
Q ss_pred cCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 132 KVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
. .+...+...+.|+..++ +|++++++..
T Consensus 296 --G--~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 --G--AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred --c--HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 1 22333345688888887 6888876653
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.46 E-value=2.2e-07 Score=70.20 Aligned_cols=94 Identities=18% Similarity=0.142 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCcccccccc----c--------ccccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103 58 TIKFDIWDTAGQERYHSLA----P--------MYYRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANK 124 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~----~--------~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (199)
.+.+.++||||....+... . ..-...|..++|+|++.. +.+... ..+.+... +.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~~---~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAVG---LTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhCC---CCEEEEEc
Confidence 4678899999975432211 0 112247899999999743 223332 22222111 35789999
Q ss_pred CCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
.|..... =.........+.|+..++ +|++++++-
T Consensus 227 lDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9974421 123344445688888887 677776553
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.45 E-value=6.7e-07 Score=67.89 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=65.5
Q ss_pred CCccc-ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh
Q 029103 67 AGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN 145 (199)
Q Consensus 67 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 145 (199)
|||.. ........+..+|++++|+|+.++.+.+.. .+...+ .+.|+++|+||+|+.+.... ..........
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence 66642 223345668899999999999876443221 111212 25789999999998543211 1111122234
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 146 GLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 146 ~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
+.+++.+|++++.|++++.+.|.+.+.+.
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 56789999999999999999998887654
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.41 E-value=1.3e-06 Score=60.81 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCccccccccc--------ccccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 029103 58 TIKFDIWDTAGQERYHSLAP--------MYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDL 127 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (199)
.....++|++|......... ......+.+++++|+.+... ++....+..++... -+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 45678999999754332222 12345789999999754322 11212233333322 3789999995
No 377
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.41 E-value=2e-06 Score=66.35 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=82.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC------------------CCcCcccee-----EEEE--------------
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD------------------FQESTIGAA-----FFTQ-------------- 50 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~------------------~~~~~~~~~-----~~~~-------------- 50 (199)
-.+++|+++|+..+|||||+-.|..+...+ -..+..+-+ ....
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 369999999999999999998776532211 111111111 1111
Q ss_pred EEEeCCeEEEEEEEeCCCccccccccccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 51 VLSLNEVTIKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 51 ~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.-.+.+....++|+|.+|++.|....-.-.. -.|.-++++-.+-. -.-..++.+..... -..|+++|.+|+|+.
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence 1112233345889999999998754332211 23444555544321 11111222222222 267788888888876
Q ss_pred ccccCCHHHHHHHH-----------------------------HHhCCcEEEeccCCCCCHHHHH
Q 029103 129 EKRKVKNEEGELYA-----------------------------QENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 129 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
......+ ..+.+. .+.-|++|.+|-.+|+++.-+.
T Consensus 287 PANiLqE-tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 287 PANILQE-TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred cHHHHHH-HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 5433222 111111 1223578999999999976443
No 378
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.41 E-value=1e-06 Score=60.01 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=50.6
Q ss_pred ccccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103 78 MYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (199)
..+..+|++++|+|+.++.+.. .+..++.. . ..+.|+++++||+|+.+... ...........+..++++|++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3567899999999998875433 33333332 2 25689999999999864332 223334444556789999999
Q ss_pred CCC
Q 029103 156 SAH 158 (199)
Q Consensus 156 ~~~ 158 (199)
++.
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
Confidence 875
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=6.8e-07 Score=70.39 Aligned_cols=57 Identities=19% Similarity=0.199 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
.++.++|.+|||||||+|+|.+.... ....+..+++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999999864311 112344555666555555443 3599999974
No 380
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.37 E-value=7.1e-06 Score=63.29 Aligned_cols=144 Identities=18% Similarity=0.144 Sum_probs=76.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCC------CcCccceeE---------EEEE-----EEeC---------------Ce
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDF------QESTIGAAF---------FTQV-----LSLN---------------EV 57 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~------~~~~~~~~~---------~~~~-----~~~~---------------~~ 57 (199)
.+|-|.-|||||||++.++.+..-.. ....++++. ...+ +.|. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 47889999999999999998442000 001111110 0000 1111 12
Q ss_pred EEEEEEEeCCCcccccccccccc--------cCCCEEEEEEECCCHHHH-HHHHH-HHHHHHHhCCCCceEEEEEeCCCC
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDITSMDSF-ERAKK-WVQELQRQGNPNLIMFLVANKVDL 127 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~ 127 (199)
.+...++++.|..........+. ...|+++-|+|+..-... ..... ...++. .. =+|++||+|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~A---D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FA---DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hC---cEEEEecccC
Confidence 24566888888665543333332 235789999998654222 11222 222232 12 3899999999
Q ss_pred cccccCCHHHHHHHHHH--hCCcEEEeccCCCCCHHHHHH
Q 029103 128 EEKRKVKNEEGELYAQE--NGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 128 ~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~ 165 (199)
.+.... .......+. ...+++.++. ...+..++++
T Consensus 158 v~~~~l--~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 158 VDAEEL--EALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CCHHHH--HHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 886642 233333333 3456777776 3344444443
No 381
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.9e-07 Score=72.69 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=97.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC--------CCCCC--------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG--------QFFDF--------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
.-.+|.|+.+-.+||||.-.+++-- ..... .....+++....-+++++.+.++.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4568999999999999998887641 11110 1223466777788889999999999999999999
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
.-..+..++-.|+++.|||.+-.-..+.+..|.+ ....++|-...+||.|...... .........+++..
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak 185 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAK 185 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCc
Confidence 8888888999999999999986644555556643 3356788889999999865332 23344455556654
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=1.2e-06 Score=69.00 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~ 71 (199)
.+|+++|.+|||||||+|+|.+.... .......+++.....+..+. .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 48999999999999999999974321 12334455555555554422 246999999753
No 383
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=1.3e-06 Score=66.66 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCC-c-----CccceeEEEEEEEeCCeEEEEEEEeCCCccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-E-----STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH 73 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~ 73 (199)
-.++++|++|||||||+|.|.+....... . ....++.........+.. .++|+||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 46899999999999999999975432211 1 112233444444444322 489999986643
No 384
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.34 E-value=7.5e-07 Score=64.32 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=81.6
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEe
Q 029103 55 NEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVAN 123 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~n 123 (199)
+-..+.+.+.|.+|+.....-|-..+.++-.+++.+.++. ...+++.+-++..+..+. ..+.++|+.+|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 3345567789999998888888888888888877766653 344555556666676665 37888999999
Q ss_pred CCCCcccc----------------cCCHHHHHHHHHHh----C------CcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 124 KVDLEEKR----------------KVKNEEGELYAQEN----G------LSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 124 K~D~~~~~----------------~~~~~~~~~~~~~~----~------~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
|.|+.++. +.+...+.+|.... + +.-..+.|.+.+++.-+|..+.+-+.+.
T Consensus 275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 99984422 22333344444321 1 1124666788899999999888777654
No 385
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.6e-06 Score=74.94 Aligned_cols=114 Identities=23% Similarity=0.201 Sum_probs=67.8
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeC-CeEEEEEEEeCCCccc--------cccccccc----
Q 029103 14 VLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQER--------YHSLAPMY---- 79 (199)
Q Consensus 14 ~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~--------~~~~~~~~---- 79 (199)
+|+|+||+||||++.. ++..|+- ....-.+..... +..|+ ...-.-.++||.|... ....|..+
T Consensus 129 ~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 129 MVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred EEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 7999999999999875 3333321 111111111111 22332 2223456889998321 11233322
Q ss_pred -----ccCCCEEEEEEECCCH-----H----HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 80 -----YRGAAAAVVVYDITSM-----D----SFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 80 -----~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+..|++|+.+|+.+- . ....++.-+.++...-....|+++++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 5778999999998742 1 123334445666666678999999999999864
No 386
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.31 E-value=1.2e-06 Score=69.94 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=47.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
.+.|++||-|+|||||+||+|.|.+-.. .++++|.+.+..++.+.. .+.|.||||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 6999999999999999999999876443 677888888888887654 46699999953
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.30 E-value=1.4e-06 Score=66.55 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCccc-ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH
Q 029103 66 TAGQER-YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE 144 (199)
Q Consensus 66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 144 (199)
.|||.. -.......+..+|++++|+|+.++.+.+. .++.... .+.|+++|+||+|+.+.... .....+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHH
Confidence 367642 22334556789999999999987644322 1111111 26789999999998543211 111222234
Q ss_pred hCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 145 NGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 145 ~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.+.+++.+|++++.|++++.+.|.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 466789999999999999999998887654
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.30 E-value=6.6e-06 Score=65.60 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh------CCC----CCCC-----------cCccceeEEEEEEEeC-------------
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK------GQF----FDFQ-----------ESTIGAAFFTQVLSLN------------- 55 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~------~~~----~~~~-----------~~~~~~~~~~~~~~~~------------- 55 (199)
+..|+++|++||||||++..|.. .+. .+.+ ....+.+.+......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988863 110 0000 0001111111100000
Q ss_pred CeEEEEEEEeCCCcccccc-c---ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 56 EVTIKFDIWDTAGQERYHS-L---APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 56 ~~~~~v~l~d~~g~~~~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
...+.+.++||+|...... + ... -..+.+-+++|+|++-...... ....+.+. -.+.-+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCC
Confidence 1246789999999643321 1 111 1234678899999874422211 11222221 23458899999964
No 389
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-05 Score=66.13 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=42.2
Q ss_pred EEEEEeCCCccc---ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 60 KFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 60 ~v~l~d~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+.++|.||.+- ...-.-.+-..+|++|+|.++-+...... +.++..+... ++.+.|+.||.|...
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CCcEEEEechhhhhc
Confidence 366889998542 22223445678999999999876544433 4444444433 445778889999754
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.28 E-value=1.9e-06 Score=66.11 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCC-c-----CccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-E-----STIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~ 71 (199)
-.++++|++|||||||+|+|.+....... . ....++.....+.+.+. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 36899999999999999999875432111 1 11112333334444333 25899999764
No 391
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=4.8e-06 Score=65.39 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=56.7
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSA 157 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 157 (199)
...++|.+++|+++..+-....+.+++..+... +++.+||+||+|+.+.. ......+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 368899999999996433333444555554443 55678999999996531 111122221 45678999999999
Q ss_pred CCHHHHHHHHH
Q 029103 158 HNVNELFYEIA 168 (199)
Q Consensus 158 ~~v~~~~~~l~ 168 (199)
.|++++..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999888774
No 392
>PRK13796 GTPase YqeH; Provisional
Probab=98.24 E-value=6e-06 Score=65.12 Aligned_cols=83 Identities=34% Similarity=0.415 Sum_probs=56.2
Q ss_pred cCCC-EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH----HHHHHHhCC---cEEEe
Q 029103 81 RGAA-AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQENGL---SFLET 152 (199)
Q Consensus 81 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~---~~~~~ 152 (199)
...+ .+++|+|+.|.. ..|...+.... .+.|+++|+||+|+.... ...... ..+++..++ .++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~~-~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPKS-VKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCCc-cCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 3444 899999997743 23444444432 367899999999996422 222222 233455565 58999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 029103 153 SAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~ 170 (199)
||+++.|++++++.|.+.
T Consensus 140 SAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999765
No 393
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.7e-06 Score=68.38 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=84.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF----------------DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
.--+|.+.-+-.+||||+-++.+-..-. -......+++....-..+.+..+.++++|||||-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4567899999999999999886541100 001222345555555666777899999999999998
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
.-.....++-.|+.++|++....-.-+....|. ++.. .+.|.+..+||.|.....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~r---y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKR---YNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHh---cCCCeEEEEehhhhcCCC
Confidence 888888888999999999987553233333443 3333 478899999999986544
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=2.1e-05 Score=61.77 Aligned_cols=140 Identities=13% Similarity=0.088 Sum_probs=71.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCccceeEE------------------EEEEE---------eCCeEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFF------------------TQVLS---------LNEVTI 59 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~~~~~~~------------------~~~~~---------~~~~~~ 59 (199)
.-.++++|++|+||||++..|....... ........+.+ ..... ......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3478899999999999999987532110 00000111110 00000 011234
Q ss_pred EEEEEeCCCccccccc----cccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCccc
Q 029103 60 KFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPN--LIMFLVANKVDLEEK 130 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~ 130 (199)
.+.++||+|....+.. ...+ .....-.++|++.+.. +.+..+..-+.......... .+--+|+||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 6889999996543321 1111 1223456889988753 34444433333322111111 123688899996542
Q ss_pred ccCCHHHHHHHHHHhCCcEEEec
Q 029103 131 RKVKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.+.......++|+..++
T Consensus 297 ----~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 297 ----LGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ----ccHHHHHHHHHCcCeEEEe
Confidence 2233445556677765555
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.12 E-value=1.4e-05 Score=56.32 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=45.0
Q ss_pred EEEEEEEeCCCcccccc----ccccc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
...+.++|++|...+.. ....+ ....+.+++|+|...... .......+.+... ...+++||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 44578899999743221 11111 124899999999865432 2233333332222 257788999965422
Q ss_pred cCCHHHHHHHHHHhCCcEEE
Q 029103 132 KVKNEEGELYAQENGLSFLE 151 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (199)
-.....+...++|+..
T Consensus 156 ----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ----GAALSIRAVTGKPIKF 171 (173)
T ss_pred ----chhhhhHHHHCcCeEe
Confidence 1122255555666543
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.10 E-value=2e-05 Score=54.10 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (199)
.+.+.++|++|..... ..++..+|.+++|....-.+.+.-++ ..+... . -++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~~--~---~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIMEI--A---DIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhhh--c---CEEEEeCCC
Confidence 4678899999965322 34788899898888765222222211 112221 1 388899987
No 397
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.09 E-value=7.7e-05 Score=57.70 Aligned_cols=95 Identities=8% Similarity=0.069 Sum_probs=49.7
Q ss_pred EEEEEEeCCCccccccccccccc--------CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYR--------GAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
....++++.|......+...++. ..++++.|+|+.+.... +.......++. .. -+|++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~A---D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YA---DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hC---CEEEEeccccCC
Confidence 45678889887655544433321 24789999998643221 11111222222 22 389999999876
Q ss_pred cccCCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHH
Q 029103 130 KRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELF 164 (199)
Q Consensus 130 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~ 164 (199)
.. .......+..+ .+++.++ ........+|
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 32 23333333333 4555544 2223444444
No 398
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.2e-05 Score=64.30 Aligned_cols=115 Identities=22% Similarity=0.266 Sum_probs=78.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC------------CCCCC--CcCccceeEEEEEEEe----------------CCeEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG------------QFFDF--QESTIGAAFFTQVLSL----------------NEVTI 59 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~------------~~~~~--~~~~~~~~~~~~~~~~----------------~~~~~ 59 (199)
-.++.++.+...|||||-+.|... .+.+. .+...++++...-+.. ++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 346788999999999999998751 11111 1122233333322222 34567
Q ss_pred EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.++++|.|||-.|.+.....++-.|+.++|+|.-+.-.++.-..+.+.+.+. -+| ++++||.|..
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDRA 163 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhHH
Confidence 8999999999999998888999999999999998775555544454555443 233 7789999953
No 399
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.07 E-value=1.3e-05 Score=56.25 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeC-CCcc--------------------
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDT-AGQE-------------------- 70 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~-~g~~-------------------- 70 (199)
+|+|.|+||+|||||++++...- ... ......+......-++...-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKK--GLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHT--CGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hcc--CCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999988532 110 11111122222333455555666666 3311
Q ss_pred --ccccc----ccccccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHH
Q 029103 71 --RYHSL----APMYYRGAAAAVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQ 143 (199)
Q Consensus 71 --~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 143 (199)
.+... ....+..+| ++|+|=-.+ ++.. ..|.+.+...-..+.|++.++.+.. .......+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence 11111 111123444 666664322 1111 2334444443346788888876552 0112355556
Q ss_pred HhCCcEEEeccCCCCCH
Q 029103 144 ENGLSFLETSAKSAHNV 160 (199)
Q Consensus 144 ~~~~~~~~~s~~~~~~v 160 (199)
..+..++.++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788999987777664
No 400
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.07 E-value=8.6e-05 Score=60.23 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeC
Q 029103 59 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQ-ELQRQGNPNLIMFLVANK 124 (199)
Q Consensus 59 ~~v~l~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~ivv~nK 124 (199)
-+..+.|.||.-. -..+...+..+.+++|+|+--.+.+. -+.... .+.+..+.+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcCCCCCeeEEEEee
Confidence 3577899999421 12345678899999999986543332 222222 233344567788999999
Q ss_pred CCCcccccCCHHHHHH
Q 029103 125 VDLEEKRKVKNEEGEL 140 (199)
Q Consensus 125 ~D~~~~~~~~~~~~~~ 140 (199)
+|+.+..--.....+.
T Consensus 489 VDlAEknlA~PdRI~k 504 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQ 504 (980)
T ss_pred cchhhhccCCHHHHHH
Confidence 9997653333333333
No 401
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.06 E-value=5.7e-06 Score=58.69 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=37.3
Q ss_pred EEEEEEeCCCcccccccc---c--ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 59 IKFDIWDTAGQERYHSLA---P--MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
....++++.|......+. . ...-..+.+|.|+|+.+-.........+...... . -+|++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--A---DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--A---DVIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh--c---CEEEEeccccCChh
Confidence 456677888855444330 0 0123468999999996643333333322222222 2 28999999998755
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.05 E-value=1e-06 Score=63.39 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=46.5
Q ss_pred EEEEEEeCCCccccccc----cccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 59 IKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
+.+.++||+|...+... +..+ ....+-+++|++++.. +.++.....+..+ .. --+++||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~~---~~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF----GI---DGLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS----ST---CEEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc----cC---ceEEEEeecCCCC-
Confidence 45889999996543311 1111 1256788999998754 2233332222211 11 2677999996432
Q ss_pred cCCHHHHHHHHHHhCCcEEEec
Q 029103 132 KVKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.-.........+.|+-.++
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEE
T ss_pred ---cccceeHHHHhCCCeEEEE
Confidence 2334555666787776665
No 403
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=6.3e-05 Score=56.95 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=66.6
Q ss_pred ccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEe
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLET 152 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (199)
.+.+.-+.+.|-+++|+.+.+|+ +...+.+++-.... .++.-+|++||+|+.+.......+...+....+.+++.+
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 34444556678888888888775 34444444444433 355568889999998755443345666777789999999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 029103 153 SAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~ 171 (199)
|+++++++.++.+.+...+
T Consensus 148 s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 148 SAKNGDGLEELAELLAGKI 166 (301)
T ss_pred cCcCcccHHHHHHHhcCCe
Confidence 9999999999988776543
No 404
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=0.00027 Score=49.85 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
++|+|.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998754
No 405
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.00 E-value=3.4e-05 Score=43.30 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103 82 GAAAAVVVYDITS--MDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (199)
Q Consensus 82 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (199)
-.++++|++|++. +.+.+....++.+++.. ..+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence 4679999999985 45677777888888877 56899999999998
No 406
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=1.4e-05 Score=62.95 Aligned_cols=134 Identities=15% Similarity=0.094 Sum_probs=69.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC----------CCc-----------CccceeEEEEEE---------EeC-CeE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD----------FQE-----------STIGAAFFTQVL---------SLN-EVT 58 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~---------~~~-~~~ 58 (199)
...|+++|+.|+||||++..|...-... .+. ...+.......- ... ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3579999999999999999987511000 000 000111110000 000 013
Q ss_pred EEEEEEeCCCccccccc----ccccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 59 IKFDIWDTAGQERYHSL----APMYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
+.+.|+||+|....... ...++ ...+.+++|+|++-. .+.+...+..+.. -..--+|+||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence 57889999996432211 11222 234677889987532 2222333333332 1223688999996542
Q ss_pred CCHHHHHHHHHHhCCcEEEec
Q 029103 133 VKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.+.......++|+..++
T Consensus 393 --~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 2223445556677766555
No 407
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.96 E-value=1.3e-05 Score=60.34 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=40.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC----CCcCccceeEEEEE-EEeCCeEEEEEEEeCCCcc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD----FQESTIGAAFFTQV-LSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~v~l~d~~g~~ 70 (199)
..+++++|+|-||+|||||+|++-...... ......+++..... +.+.... .+.+.||||.-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil 207 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL 207 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence 358999999999999999999987633221 12233444444443 3333322 48899999964
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=97.94 E-value=1.1e-05 Score=64.55 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCcccccc-cc---ccc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHS-LA---PMY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
.+.+.++||+|....+. +. ..+ .-..+.+++|+|..... ........+.... ...-+|+||.|.....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence 35688999999543221 11 111 12456779999986532 2222223332211 1236788999953311
Q ss_pred cCCHHHHHHHHHHhCCcEEEecc
Q 029103 132 KVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
=.+.......++|+.+++.
T Consensus 257 ----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 1145555666777665553
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.94 E-value=0.00033 Score=51.05 Aligned_cols=62 Identities=32% Similarity=0.349 Sum_probs=38.5
Q ss_pred EEEEeC-CCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 61 FDIWDT-AGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 61 v~l~d~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
+.+.|| +|.+.|. +...+++|.+|.|+|.+- .++....+.-+...+.. -.++.+|+||+|..
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 445555 3444433 334678999999999873 45555444433333332 36789999999953
No 410
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.94 E-value=0.0012 Score=45.92 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=100.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEe-CCCcccccccccccccCCCEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWD-TAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d-~~g~~~~~~~~~~~~~~~d~~i 87 (199)
-...|+++|..+.++..|.+++....- . . .++|.+-- .|-..+.... -...|.++
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~----~--~--------------~l~Vh~a~sLPLp~e~~~l----RprIDlIV 69 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDK----E--F--------------KLKVHLAKSLPLPSENNNL----RPRIDLIV 69 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhcc----c--e--------------eEEEEEeccCCCcccccCC----CceeEEEE
Confidence 378999999999999999999985220 1 0 11211111 1111122222 34689999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+++|..+..+++.+..-+..+.....-+ -++++.+-....+...+...+...++..++++++...-...++...+-+.|
T Consensus 70 Fvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRL 148 (176)
T PF11111_consen 70 FVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRL 148 (176)
T ss_pred EEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHH
Confidence 9999999999988877666654332222 256777777767777888999999999999999999999998888888888
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+.-..
T Consensus 149 L~~lqi~a 156 (176)
T PF11111_consen 149 LRMLQICA 156 (176)
T ss_pred HHHHHHHc
Confidence 88776543
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=2.8e-05 Score=63.36 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCccceeE------------------EEEEEEe---------CCeEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAF------------------FTQVLSL---------NEVTI 59 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~~~~~~------------------~~~~~~~---------~~~~~ 59 (199)
.-.|+|+|+.|+||||++..|...-... ........+. ......- ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4578999999999999998887521100 0000000000 0000000 11246
Q ss_pred EEEEEeCCCcccccccc----cccc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC
Q 029103 60 KFDIWDTAGQERYHSLA----PMYY-RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK 134 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~~----~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 134 (199)
.+.|+||+|....+... ..+. ......++|++.+.. ...+...+..+... .+.-+|+||.|....
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~~---- 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETGR---- 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCccc----
Confidence 78899999965332110 0000 012345677776532 33333333333322 346799999996431
Q ss_pred HHHHHHHHHHhCCcEEEec
Q 029103 135 NEEGELYAQENGLSFLETS 153 (199)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~s 153 (199)
.-.........++++..++
T Consensus 500 lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT 518 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe
Confidence 2334455556677766665
No 412
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.93 E-value=0.00014 Score=56.83 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+|.|..|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999863
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=1.1e-05 Score=64.34 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCc--------------------cceeEEEEEEE-------eCCeEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD---FQEST--------------------IGAAFFTQVLS-------LNEVTI 59 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~--------------------~~~~~~~~~~~-------~~~~~~ 59 (199)
.-.|+++|+.|+||||++..|.+..... ..... .++......-. ......
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 4579999999999999999887531100 00000 00000000000 011234
Q ss_pred EEEEEeCCCcccccc----cccccc--cCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDITS-MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
.+.++||+|...... ....+. ....-.++|++++. ...+.++ +..+.. -.+--+|+||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~~-- 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAAS-- 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCCC--
Confidence 578999999653221 112221 22346788999873 3333333 222221 2223688999996542
Q ss_pred CCHHHHHHHHHHhCCcEEEec
Q 029103 133 VKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.+.......++++..++
T Consensus 342 --~G~~l~~~~~~~lPi~yvt 360 (420)
T PRK14721 342 --LGIALDAVIRRKLVLHYVT 360 (420)
T ss_pred --ccHHHHHHHHhCCCEEEEE
Confidence 2234555566777776665
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.90 E-value=2.1e-05 Score=63.21 Aligned_cols=136 Identities=19% Similarity=0.149 Sum_probs=69.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC----C------CCCCcC-----------ccceeEEEEEEEe-----------CC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ----F------FDFQES-----------TIGAAFFTQVLSL-----------NE 56 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~----~------~~~~~~-----------~~~~~~~~~~~~~-----------~~ 56 (199)
.+..|+++|++|+||||++..|...- . .+.+.+ ..+.+........ ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46789999999999999988876510 0 000000 0011111100000 00
Q ss_pred eEEEEEEEeCCCccccccc----ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 57 VTIKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
....+.++||+|....... ... .....|.+++|+|.+... ........+... -...-+|+||.|....
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~i~gvIlTKlD~~a~ 247 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VGIGGIIITKLDGTAK 247 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CCCCEEEEecccCCCc
Confidence 1236889999996543211 111 134678899999987542 111222222211 1123688899996431
Q ss_pred ccCCHHHHHHHHHHhCCcEEEecc
Q 029103 131 RKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
.=.+.......+.|+.+++.
T Consensus 248 ----~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 248 ----GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ----ccHHHHHHHHHCcCEEEEec
Confidence 11233444455667655553
No 415
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.88 E-value=0.00055 Score=48.44 Aligned_cols=86 Identities=24% Similarity=0.241 Sum_probs=58.0
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 136 (199)
..+.+.++|+|+... ......+..+|.+++++..+ ..+...+..+++.+... +.|+.+++|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 456789999996532 12334568899999999876 34556666666666543 4567899999996432 244
Q ss_pred HHHHHHHHhCCcEEE
Q 029103 137 EGELYAQENGLSFLE 151 (199)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (199)
+..++....+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 566677777877653
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=2.3e-05 Score=63.50 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
--++++|+.||||||.+..|.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999886
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=2.8e-05 Score=62.33 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCccccccc----ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
.+.+.++||+|....+.. ... ..-..+.+++|+|.+... ........+..... ..-+|+||.|.....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcccc
Confidence 356889999995432211 111 123467889999987542 22233333332211 246889999953311
Q ss_pred cCCHHHHHHHHHHhCCcEEEecc
Q 029103 132 KVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
-.+.......++|+..+..
T Consensus 256 ----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 1255556667777766554
No 418
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.85 E-value=1.7e-05 Score=61.68 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=44.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQ 69 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~ 69 (199)
...++++|+|-|++||||+||+|......+ .....+++.....+..+ -.+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheecc---CCceeccCCce
Confidence 568999999999999999999999877654 34556666666666553 35669999995
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.85 E-value=9.1e-05 Score=47.54 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=50.2
Q ss_pred EEEEc-CCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 13 LVLLG-DMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 13 i~v~G-~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
|.+.| ..|+||||+...|...- .....+..- +..+ ..+.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~-------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLL-------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEE-------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 56999999987765422 111111111 1111 11678899998864322 2356778999999998
Q ss_pred CCCHHHHHHHHHHHH
Q 029103 92 ITSMDSFERAKKWVQ 106 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (199)
. +..++..+..+++
T Consensus 71 ~-~~~s~~~~~~~~~ 84 (104)
T cd02042 71 P-SPLDLDGLEKLLE 84 (104)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 4566766666655
No 420
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.84 E-value=7.6e-05 Score=50.71 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=63.7
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECC
Q 029103 14 VLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT 93 (199)
Q Consensus 14 ~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (199)
+.-|..|+|||++.-.+...- .....+..-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALAL-AKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 355889999999976655321 11111111111110 001112678899998753 223346788999999999875
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 94 SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
..++......++.+.... ...++.+++|+.+..
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 455665555566665442 345678999999843
No 421
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=2.5e-05 Score=60.86 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=93.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC-----------------------------CCCCCcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ-----------------------------FFDFQESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 57 (199)
+...+++.++|+..+||||+-..+.... ..+......+.+.......+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3558999999999999999876654400 00111122223333333444445
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH---HHH---HHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---FER---AKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
..++.+.|+|||..|-..+-.-..++|+.++|+++...+- |+. .+.. ..+... ..-...++++||.|-+..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt-~gv~~lVv~vNKMddPtv- 232 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT-AGVKHLIVLINKMDDPTV- 232 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh-hccceEEEEEEeccCCcc-
Confidence 5678899999999888777667788999999998753211 111 1111 112121 223446888999996531
Q ss_pred cCCHHH-------HHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 029103 132 KVKNEE-------GELYAQENG------LSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 132 ~~~~~~-------~~~~~~~~~------~~~~~~s~~~~~~v~~~~~ 165 (199)
+.+.+. ...+.+..+ ..++++|..+|.++++..+
T Consensus 233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 112211 122222222 4589999999999887664
No 422
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.82 E-value=0.00012 Score=57.51 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC-CCCC--cCccceeEEEE-----------------EEEe----------CCeEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQ--ESTIGAAFFTQ-----------------VLSL----------NEVTI 59 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~--~~~~~~~~~~~-----------------~~~~----------~~~~~ 59 (199)
.-.|+++||.||||||-+-.|..... .... ..-++++.+.. .... .....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55789999999999998877765322 0111 11111111110 0000 12345
Q ss_pred EEEEEeCCCccccccc----ccccccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 60 KFDIWDTAGQERYHSL----APMYYRG--AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
.+.|+||.|...++.. ...++.. ..-+.+|++++.. .+.++..+..+..... --+++||.|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDET~s--- 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDETTS--- 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEcccccCc---
Confidence 6889999997766532 2333333 3455668887743 4556666666543322 2578999996542
Q ss_pred CHHHHHHHHHHhCCcEEEec
Q 029103 134 KNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.......+.+.|+..++
T Consensus 354 -~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 354 -LGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred -hhHHHHHHHHhCCCeEEEe
Confidence 2223344445566655444
No 423
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.82 E-value=1.7e-05 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=3.6e-05 Score=65.38 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccceeEEE----------------EEEEe-----------CCeEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFT----------------QVLSL-----------NEVTIK 60 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~~~~~~----------------~~~~~-----------~~~~~~ 60 (199)
--|+++|+.||||||.+..|.+...... .......+.+. ..... ......
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3679999999999999999886321110 00001111100 00000 112346
Q ss_pred EEEEeCCCcccccc----ccccc--ccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 61 FDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 61 v~l~d~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
+.|+||+|...... ..... ....+-.++|+|.+.. +.+.++ ...+...... .+--+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~-~i~glIlTKLDEt~~--- 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGE-DVDGCIITKLDEATH--- 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccC-CCCEEEEeccCCCCC---
Confidence 88999999432221 11111 2234567889998742 333333 3333221100 134688999996542
Q ss_pred CHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 134 KNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.=.+..+....++|+..++ +|++|
T Consensus 339 -~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 -LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred -ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 2223445556677776665 34444
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.82 E-value=1.9e-05 Score=52.11 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=2.7e-05 Score=61.02 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=68.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC----------CCCcC-----------ccceeEEEEEEE---------eC-CeE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF----------DFQES-----------TIGAAFFTQVLS---------LN-EVT 58 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~----------~~~~~-----------~~~~~~~~~~~~---------~~-~~~ 58 (199)
.-.|+++|++|+||||++..|...... +.+.. ..+.......-. .. ...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 456899999999999999988751100 00000 011111100000 00 023
Q ss_pred EEEEEEeCCCccccccc----cccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 59 IKFDIWDTAGQERYHSL----APMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
+.+.++||+|...+... ...+.. ..+.+++|++.+. ...++...+..+. .-.+--+|+||.|....
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~~-- 357 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETTR-- 357 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCCC--
Confidence 57889999997543321 111221 3356677776532 2333333333322 12223688999996432
Q ss_pred CCHHHHHHHHHHhCCcEEEec
Q 029103 133 VKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.+.......+.|+..++
T Consensus 358 --~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 358 --IGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred --ccHHHHHHHHHCCCEEEEe
Confidence 2223445556677766665
No 427
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.78 E-value=2.8e-05 Score=44.70 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..+|.|+.|+|||||++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999765
No 428
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=2.4e-05 Score=54.92 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+|+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 429
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.76 E-value=0.00026 Score=44.39 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-ccccccCCCEEEEEEE
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYD 91 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-~~~~~~~~d~~i~v~d 91 (199)
+++.|.+|+||||+...+...--. ...+.. .++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999887753211 111111 112 6779999886432221 1445667899999998
Q ss_pred CCCHHHHHHHHH
Q 029103 92 ITSMDSFERAKK 103 (199)
Q Consensus 92 ~~~~~s~~~~~~ 103 (199)
... .++.....
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 654 33444333
No 430
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.0002 Score=57.04 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=68.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC--CCCc--------------------CccceeEEEEE------EEeCCeEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF--DFQE--------------------STIGAAFFTQV------LSLNEVTIKF 61 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~--~~~~--------------------~~~~~~~~~~~------~~~~~~~~~v 61 (199)
..-|+++|++||||||++..|...... .... ...+.+..... .......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 346889999999999999988752100 0000 00111111000 0001124567
Q ss_pred EEEeCCCcccccc----ccccccc-----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 62 DIWDTAGQERYHS----LAPMYYR-----GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 62 ~l~d~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
.++||+|...... .+..++. ...-.++|+|++... +.+...+..+.. -.+--+|+||.|....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF-- 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence 8999999643221 1122221 234678899987542 222222222211 1223788999996432
Q ss_pred CCHHHHHHHHHHhCCcEEEec
Q 029103 133 VKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.+.......+.|+..++
T Consensus 375 --~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 --LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred --ccHHHHHHHHHCCCEEEEe
Confidence 1223445556677765555
No 431
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.74 E-value=0.00028 Score=56.81 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCccccc----cccccccc---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 58 TIKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
.+.+.++|++|..... .....++. ...-+++|++.+-. ...+...+..+... + +--+++||.|....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETSS 372 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEeccccccc
Confidence 3568899999975432 11222222 23466788887632 22223333333211 1 23688999996432
Q ss_pred ccCCHHHHHHHHHHhCCcEEEec
Q 029103 131 RKVKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.-.........++++..++
T Consensus 373 ----~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 373 ----LGSILSLLIESGLPISYLT 391 (424)
T ss_pred ----ccHHHHHHHHHCCCEEEEe
Confidence 2245666667788877666
No 432
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.74 E-value=0.00027 Score=47.62 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
...+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999999999998654
No 433
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=3.1e-05 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+|+|+|++|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.70 E-value=0.00031 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999998643
No 435
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.69 E-value=3.4e-05 Score=52.44 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+++|+||||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 436
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=2.6e-05 Score=54.78 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=31.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIK 60 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (199)
..=++|.||+|||||||+++|.... ....+...+++..+..-.++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~ 52 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYF 52 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeE
Confidence 3457899999999999999998654 333444444444444444444443
No 437
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00026 Score=53.41 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-C--------------------CcCccceeEEEEEEE---------e-CCeEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFD-F--------------------QESTIGAAFFTQVLS---------L-NEVTI 59 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~-~--------------------~~~~~~~~~~~~~~~---------~-~~~~~ 59 (199)
-+|+++|++|+||||++..+...-... . +....+.+.....-. . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 589999999999999998876521100 0 000011111100000 0 11246
Q ss_pred EEEEEeCCCcccccc----cccccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC
Q 029103 60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV 133 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 133 (199)
.+.++|++|...... .+..++ ...+-+++|+|++.. .+.+..++..+.. -.+--+++||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~--- 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS--- 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCC---
Confidence 788999999653221 111121 234568999998632 2222333333322 2223788999996542
Q ss_pred CHHHHHHHHHHhCCcEEEec
Q 029103 134 KNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~s 153 (199)
.=.+.......+.|+..++
T Consensus 227 -~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 -SGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -ccHHHHHHHHHCcCEEEEe
Confidence 2233445556677766665
No 438
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.62 E-value=0.00027 Score=47.45 Aligned_cols=24 Identities=42% Similarity=0.750 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=5.5e-05 Score=54.43 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCcEE--EeccCCCCCHHHHHHHHHHHHHhh
Q 029103 136 EEGELYAQENGLSFL--ETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.-++.++....+-.| ++||.+.+-+.|+++.+.+...+-
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 334445444444444 799999999999999888877653
No 440
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=5.6e-05 Score=55.17 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-|+|+|++|||||||++.+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998764
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.58 E-value=8e-05 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 442
>PRK01889 GTPase RsgA; Reviewed
Probab=97.56 E-value=9.9e-05 Score=58.09 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-+++++|.+|+|||||++.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999999743
No 443
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0014 Score=52.10 Aligned_cols=139 Identities=12% Similarity=0.044 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCC-----CCc--------------------CccceeEEEEEEE-------eCCe
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFD-----FQE--------------------STIGAAFFTQVLS-------LNEV 57 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~-----~~~--------------------~~~~~~~~~~~~~-------~~~~ 57 (199)
...|+++|++|+||||.+..|...-... ... ...+.+....... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4578999999999999998876421000 000 0011111110000 0113
Q ss_pred EEEEEEEeCCCcccccc----cccccccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 58 TIKFDIWDTAGQERYHS----LAPMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
.+.+.++||+|...... ....++.. ..-.++|+|++.. ...+...+..+.. -.+--+++||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence 45688999999654321 11122222 2257899998754 3333333333321 1234788999996442
Q ss_pred ccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 131 RKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.=.+..+....+.|+..++ +|.++
T Consensus 328 ----~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 ----VGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ----chHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2223445556677765555 34444
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.52 E-value=0.00032 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
|+|+|++|+||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987643
No 445
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.52 E-value=0.00032 Score=46.41 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458899999999999999998754
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=7.8e-05 Score=54.79 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|.++|++|+|||||++.+.|-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998873
No 447
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.52 E-value=8e-05 Score=53.18 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.=|+|+||+|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999999864
No 448
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.51 E-value=7.4e-05 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 449
>PRK10646 ADP-binding protein; Provisional
Probab=97.47 E-value=0.00087 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-|++-|.-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 450
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.47 E-value=0.00051 Score=44.35 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=59.0
Q ss_pred EcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCH
Q 029103 16 LGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSM 95 (199)
Q Consensus 16 ~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (199)
=+..|+||||+.-.|...-.........-.+.... .. ..+.++|+|+.... .....+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-h
Confidence 36779999998776654211110111111111111 00 16789999885432 2334678899999999754 5
Q ss_pred HHHHHHHHHHHHHHHhCCC-CceEEEEEeC
Q 029103 96 DSFERAKKWVQELQRQGNP-NLIMFLVANK 124 (199)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 124 (199)
.++..+..+++.+.....+ ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6677777777777765444 4456677774
No 451
>PRK06217 hypothetical protein; Validated
Probab=97.46 E-value=0.00013 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.46 E-value=0.00011 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999988643
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.46 E-value=0.00015 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 454
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=0.00012 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+|+|+|+||+||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998763
No 455
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.45 E-value=0.00012 Score=48.61 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998864
No 456
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.43 E-value=0.00014 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.++|+|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 579999999999999998876
No 457
>PRK14530 adenylate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 458
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00013 Score=53.18 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 029103 13 LVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~ 32 (199)
|+|+|++|+|||||++.+.+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999976
No 459
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.40 E-value=0.00015 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 460
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.40 E-value=0.00015 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999754
No 461
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.39 E-value=0.0002 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....-|+|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35667889999999999999999753
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.00017 Score=48.04 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|++.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 463
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.38 E-value=0.00021 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...-|+|+|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999863
No 464
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.38 E-value=0.00081 Score=45.68 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQF 35 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~ 35 (199)
.--|++-|+-|||||||.+.+...--
T Consensus 25 g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 25 GDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 34578889999999999999887543
No 465
>PRK13949 shikimate kinase; Provisional
Probab=97.38 E-value=0.00018 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+|+|+|++|+|||||.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998876
No 466
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00049 Score=51.44 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=44.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC----cCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~l~d~~g 68 (199)
....++|+-+|..|-|||||++.|.+-.+.... .+............-.+..+++.+.||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 346899999999999999999999986664322 23333333333344466778899999998
No 467
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.38 E-value=6.8e-05 Score=58.47 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g 68 (199)
.....+.|+++|-|++||||++|+|-... .-...++........+----..+-|+|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~Kk----VCkvAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKK----VCKVAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcc----cccccCCCCcchHHHHHHHHhceeEecCCC
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.36 E-value=0.0002 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQF 35 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~ 35 (199)
-.++++|++|+||||++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999986543
No 469
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.35 E-value=0.00018 Score=46.27 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 029103 11 VKLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~ 31 (199)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999875
No 470
>PRK14532 adenylate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=51.08 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 471
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.32 E-value=0.0024 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
=+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3566899999999999999874
No 472
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.31 E-value=0.0002 Score=50.98 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|+|+|||||||+++.|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 473
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.31 E-value=0.00021 Score=51.47 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 474
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.30 E-value=0.0014 Score=47.07 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+.++|+||.||||||+...+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 56789999999999999998776
No 475
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.30 E-value=0.00021 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-|+|+|++|+|||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999863
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.28 E-value=0.00029 Score=51.25 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 477
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0002 Score=48.43 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=23.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
....+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5688999999999999999999875
No 478
>PRK00625 shikimate kinase; Provisional
Probab=97.27 E-value=0.00028 Score=49.77 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+|+++|.|||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 479
>PRK08233 hypothetical protein; Provisional
Probab=97.26 E-value=0.00032 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..-|+|.|++|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366888999999999999999853
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.26 E-value=0.00029 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.++|+|++|+|||||++.|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999864
No 481
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00056 Score=48.09 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCcEE--EeccCCCCCHHHHHHHHHHHHHhh
Q 029103 136 EEGELYAQENGLSFL--ETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.-+..++.+...-.| ++||.+.+=+.|++..|.++..+-
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 334555555554444 799999999999999888777663
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.25 E-value=0.00026 Score=51.98 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998863
No 483
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.24 E-value=0.00025 Score=52.83 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 029103 13 LVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~ 32 (199)
++|+||.|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999987
No 484
>PRK02496 adk adenylate kinase; Provisional
Probab=97.24 E-value=0.00034 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+|+|+|+||+||||+...|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 485
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.24 E-value=0.00032 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 486
>PRK14531 adenylate kinase; Provisional
Probab=97.23 E-value=0.00033 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+|+++|+|||||||+...|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 487
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.23 E-value=0.0003 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998743
No 488
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.22 E-value=0.00033 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.++|+|+|+|||||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.22 E-value=0.00033 Score=49.51 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 029103 11 VKLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~ 31 (199)
-.++|+|+.|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999886
No 490
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.22 E-value=0.00036 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|+|+.|+|||||++.|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 491
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.22 E-value=0.00031 Score=49.87 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 029103 13 LVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~ 32 (199)
|+|+|+|||||||+...|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 492
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.21 E-value=0.00028 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.20 E-value=0.00033 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 494
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.20 E-value=0.00033 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 495
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.20 E-value=0.0057 Score=44.84 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=64.3
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECC--CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT--SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 135 (199)
.+.+.|+|+.|..... ....+..+|.+|+=.-.+ |-+..-....|+..+.......+|.-|++|++.-.... ...
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~-~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLT-RAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhh-HHH
Confidence 3578899998865322 334466789888866555 33333333456666655557889999999998732111 111
Q ss_pred HHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 136 EEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 136 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
....++. .++|++.+.....+...++|.
T Consensus 160 ~~~~e~~--~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQL--ESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHH--hcCCccccccccHHHHHHHHH
Confidence 1122222 258889998888877777776
No 496
>PLN02200 adenylate kinase family protein
Probab=97.19 E-value=0.00054 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..+.|+|+|+|||||||+...|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357799999999999999998875
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.19 E-value=0.00033 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.--|+|+|++|+|||||++.|.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 498
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.19 E-value=0.00034 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.19 E-value=0.00032 Score=50.24 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999864
No 500
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0003 Score=54.50 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
++++||+|+|||||++.+.|-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999873
Done!