Query 029103
Match_columns 199
No_of_seqs 108 out of 1857
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.2E-43 1.4E-47 255.1 19.9 169 8-176 11-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 3.8E-37 1.3E-41 222.5 24.8 170 7-176 5-174 (206)
3 1vg8_A RAS-related protein RAB 100.0 2.6E-36 8.9E-41 218.1 21.0 192 7-199 5-207 (207)
4 2efe_B Small GTP-binding prote 100.0 9.8E-36 3.4E-40 210.6 22.9 175 1-175 3-177 (181)
5 2bov_A RAla, RAS-related prote 100.0 7.4E-36 2.5E-40 215.4 21.5 166 8-174 12-178 (206)
6 3cpj_B GTP-binding protein YPT 100.0 1.4E-35 4.8E-40 216.9 22.1 170 8-177 11-180 (223)
7 3tkl_A RAS-related protein RAB 100.0 8.9E-35 3E-39 208.2 24.5 171 7-177 13-183 (196)
8 2a5j_A RAS-related protein RAB 100.0 9.9E-35 3.4E-39 207.5 24.2 171 5-175 16-186 (191)
9 2gf9_A RAS-related protein RAB 100.0 1.7E-34 5.7E-39 205.9 25.1 168 7-174 19-186 (189)
10 2ew1_A RAS-related protein RAB 100.0 5.8E-35 2E-39 210.4 22.4 169 7-175 23-191 (201)
11 2hup_A RAS-related protein RAB 100.0 7.1E-35 2.4E-39 210.0 21.9 170 7-176 26-196 (201)
12 2fu5_C RAS-related protein RAB 100.0 1.7E-35 5.8E-40 209.9 18.1 169 7-175 5-173 (183)
13 1z08_A RAS-related protein RAB 100.0 1E-34 3.5E-39 203.3 21.5 167 7-173 3-169 (170)
14 1z0f_A RAB14, member RAS oncog 100.0 1.9E-34 6.5E-39 203.4 22.5 168 6-173 11-178 (179)
15 3tw8_B RAS-related protein RAB 100.0 1.8E-34 6.1E-39 203.9 22.2 168 7-175 6-173 (181)
16 1r2q_A RAS-related protein RAB 100.0 1.3E-34 4.5E-39 202.5 21.2 166 7-172 3-168 (170)
17 2oil_A CATX-8, RAS-related pro 100.0 1.8E-34 6.1E-39 206.4 22.2 171 5-175 20-190 (193)
18 1z0j_A RAB-22, RAS-related pro 100.0 3.9E-34 1.3E-38 200.2 23.4 166 7-172 3-168 (170)
19 2bme_A RAB4A, RAS-related prot 100.0 2.3E-34 7.7E-39 204.5 22.0 169 7-175 7-175 (186)
20 2g6b_A RAS-related protein RAB 100.0 5.7E-34 1.9E-38 201.3 23.8 171 5-175 5-176 (180)
21 3t5g_A GTP-binding protein RHE 100.0 3.5E-34 1.2E-38 202.8 22.7 170 7-177 3-173 (181)
22 2fg5_A RAB-22B, RAS-related pr 100.0 1.4E-34 4.9E-39 206.9 20.7 169 6-174 19-187 (192)
23 1ek0_A Protein (GTP-binding pr 100.0 2.3E-34 7.8E-39 201.3 20.9 164 9-172 2-168 (170)
24 2fn4_A P23, RAS-related protei 100.0 5.2E-34 1.8E-38 201.5 22.7 171 5-176 4-175 (181)
25 1g16_A RAS-related protein SEC 100.0 3.7E-34 1.3E-38 200.4 21.4 166 9-175 2-167 (170)
26 3dz8_A RAS-related protein RAB 100.0 2.4E-35 8.2E-40 210.7 15.6 169 8-176 21-189 (191)
27 2il1_A RAB12; G-protein, GDP, 100.0 1.6E-34 5.6E-39 206.6 19.3 170 5-174 21-191 (192)
28 1zbd_A Rabphilin-3A; G protein 100.0 8E-34 2.7E-38 204.5 23.0 169 7-175 5-173 (203)
29 3kkq_A RAS-related protein M-R 100.0 9.2E-34 3.1E-38 200.9 22.9 167 6-173 14-182 (183)
30 2o52_A RAS-related protein RAB 100.0 3E-34 1E-38 206.5 20.4 168 8-175 23-190 (200)
31 2y8e_A RAB-protein 6, GH09086P 100.0 4.1E-34 1.4E-38 201.7 20.7 166 8-173 12-177 (179)
32 2gf0_A GTP-binding protein DI- 100.0 1.2E-34 4.1E-39 208.0 18.1 169 6-176 4-174 (199)
33 1z2a_A RAS-related protein RAB 100.0 5.1E-34 1.7E-38 199.3 20.7 165 8-173 3-167 (168)
34 2j0v_A RAC-like GTP-binding pr 100.0 2.4E-34 8.2E-39 208.6 19.6 169 8-178 7-185 (212)
35 3bc1_A RAS-related protein RAB 100.0 5.4E-34 1.9E-38 203.6 21.2 170 6-175 7-187 (195)
36 2hxs_A RAB-26, RAS-related pro 100.0 2.7E-34 9.1E-39 202.7 19.0 169 7-175 3-175 (178)
37 4dsu_A GTPase KRAS, isoform 2B 100.0 1.1E-33 3.8E-38 201.3 21.8 166 8-175 2-168 (189)
38 3reg_A RHO-like small GTPase; 100.0 2.8E-33 9.7E-38 200.4 23.3 169 6-176 19-191 (194)
39 2p5s_A RAS and EF-hand domain 100.0 2.5E-34 8.5E-39 206.7 17.7 170 4-173 22-197 (199)
40 1z06_A RAS-related protein RAB 100.0 1.2E-33 4.2E-38 201.5 20.9 166 8-173 18-188 (189)
41 3oes_A GTPase rhebl1; small GT 100.0 6.3E-34 2.1E-38 204.9 19.5 168 8-176 22-190 (201)
42 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.9E-33 9.9E-38 197.2 22.5 168 6-174 3-175 (177)
43 3cph_A RAS-related protein SEC 100.0 2.9E-33 9.9E-38 202.9 22.3 167 8-175 18-184 (213)
44 2nzj_A GTP-binding protein REM 100.0 1.7E-33 5.8E-38 197.9 20.5 168 8-176 2-172 (175)
45 3q85_A GTP-binding protein REM 100.0 2.1E-33 7E-38 196.6 20.6 165 10-174 2-168 (169)
46 3q3j_B RHO-related GTP-binding 100.0 1.4E-33 4.9E-38 205.1 20.5 169 7-177 24-207 (214)
47 3cbq_A GTP-binding protein REM 100.0 8.5E-34 2.9E-38 203.5 19.0 170 6-175 19-190 (195)
48 3c5c_A RAS-like protein 12; GD 100.0 1.6E-33 5.6E-38 200.7 20.3 165 7-173 18-186 (187)
49 1x3s_A RAS-related protein RAB 100.0 6.5E-33 2.2E-37 198.3 22.2 167 8-175 13-180 (195)
50 3clv_A RAB5 protein, putative; 100.0 8.7E-33 3E-37 198.9 22.8 165 8-175 5-206 (208)
51 3ihw_A Centg3; RAS, centaurin, 100.0 8.7E-33 3E-37 196.4 22.4 163 6-175 16-182 (184)
52 1ky3_A GTP-binding protein YPT 100.0 3.5E-33 1.2E-37 197.5 19.6 168 7-174 5-179 (182)
53 2f7s_A C25KG, RAS-related prot 100.0 6.3E-34 2.2E-38 207.1 15.8 169 7-175 22-201 (217)
54 2q3h_A RAS homolog gene family 100.0 8.5E-33 2.9E-37 198.8 21.5 169 6-176 16-198 (201)
55 3q72_A GTP-binding protein RAD 100.0 6.7E-33 2.3E-37 193.4 20.2 163 10-174 2-165 (166)
56 1u8z_A RAS-related protein RAL 100.0 7.7E-33 2.6E-37 193.1 20.5 164 9-173 3-167 (168)
57 1c1y_A RAS-related protein RAP 100.0 7.4E-33 2.5E-37 193.2 20.0 163 9-172 2-166 (167)
58 1kao_A RAP2A; GTP-binding prot 100.0 5.9E-33 2E-37 193.5 19.4 164 9-173 2-166 (167)
59 2atv_A RERG, RAS-like estrogen 100.0 6.8E-33 2.3E-37 198.7 19.6 167 7-175 25-193 (196)
60 2atx_A Small GTP binding prote 100.0 3.5E-32 1.2E-36 194.6 22.6 165 7-173 15-193 (194)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.4E-32 8.2E-37 193.9 21.6 166 8-175 3-182 (186)
62 2a9k_A RAS-related protein RAL 100.0 1.6E-32 5.6E-37 194.8 20.6 167 7-174 15-182 (187)
63 2g3y_A GTP-binding protein GEM 100.0 2.2E-32 7.7E-37 198.0 21.1 168 7-175 34-205 (211)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 2.2E-32 7.4E-37 194.3 20.2 165 7-173 4-183 (184)
65 3con_A GTPase NRAS; structural 100.0 1E-31 3.5E-36 191.5 23.6 168 7-176 18-186 (190)
66 2iwr_A Centaurin gamma 1; ANK 100.0 4.8E-32 1.7E-36 191.2 21.5 161 8-175 5-171 (178)
67 4djt_A GTP-binding nuclear pro 100.0 4.2E-33 1.4E-37 202.9 16.4 173 6-178 7-180 (218)
68 2yc2_C IFT27, small RAB-relate 100.0 2.8E-33 9.4E-38 202.1 15.3 168 8-175 18-194 (208)
69 1gwn_A RHO-related GTP-binding 100.0 4.2E-32 1.4E-36 196.1 20.1 165 7-173 25-204 (205)
70 2j1l_A RHO-related GTP-binding 100.0 4.2E-32 1.4E-36 197.3 19.9 166 8-175 32-211 (214)
71 2erx_A GTP-binding protein DI- 100.0 2.5E-32 8.7E-37 191.2 17.5 164 9-173 2-167 (172)
72 3l0i_B RAS-related protein RAB 100.0 1.1E-34 3.8E-39 208.6 4.9 167 8-174 31-197 (199)
73 2gco_A H9, RHO-related GTP-bin 100.0 2.5E-31 8.4E-36 191.4 22.3 164 8-173 23-200 (201)
74 4gzl_A RAS-related C3 botulinu 100.0 6.2E-32 2.1E-36 195.0 18.9 167 3-171 23-203 (204)
75 2ce2_X GTPase HRAS; signaling 100.0 3E-31 1E-35 184.5 21.4 162 10-173 3-165 (166)
76 2fv8_A H6, RHO-related GTP-bin 100.0 3.6E-31 1.2E-35 191.3 22.6 165 8-174 23-201 (207)
77 3gj0_A GTP-binding nuclear pro 100.0 1.9E-32 6.6E-37 199.9 15.3 169 5-176 10-178 (221)
78 3t1o_A Gliding protein MGLA; G 100.0 1.8E-32 6E-37 196.3 14.2 168 4-175 8-194 (198)
79 2cjw_A GTP-binding protein GEM 100.0 1.1E-30 3.6E-35 186.9 21.8 167 8-175 4-174 (192)
80 3bwd_D RAC-like GTP-binding pr 100.0 2.7E-32 9.3E-37 193.0 13.4 164 7-172 5-180 (182)
81 2f9l_A RAB11B, member RAS onco 100.0 3.9E-30 1.3E-34 184.8 23.5 168 8-175 3-170 (199)
82 4bas_A ADP-ribosylation factor 100.0 9.2E-32 3.1E-36 193.0 14.8 167 5-175 12-191 (199)
83 1upt_A ARL1, ADP-ribosylation 100.0 9.6E-31 3.3E-35 183.2 15.0 160 8-174 5-170 (171)
84 1oix_A RAS-related protein RAB 100.0 3.1E-29 1.1E-33 179.1 23.0 165 7-171 26-190 (191)
85 1zd9_A ADP-ribosylation factor 100.0 2.1E-31 7.3E-36 189.8 10.5 160 8-173 20-185 (188)
86 1r8s_A ADP-ribosylation factor 100.0 3.1E-31 1.1E-35 184.5 9.9 156 11-173 1-162 (164)
87 2h57_A ADP-ribosylation factor 100.0 1.3E-29 4.3E-34 180.8 18.2 160 8-173 19-187 (190)
88 1ksh_A ARF-like protein 2; sma 100.0 1.4E-29 4.8E-34 179.8 17.7 160 8-174 16-181 (186)
89 1f6b_A SAR1; gtpases, N-termin 100.0 5.9E-30 2E-34 183.8 15.3 156 8-170 23-196 (198)
90 1m2o_B GTP-binding protein SAR 100.0 1.7E-29 5.8E-34 180.3 17.5 156 8-170 21-189 (190)
91 1zj6_A ADP-ribosylation factor 100.0 4.5E-30 1.5E-34 182.7 13.5 161 8-175 14-180 (187)
92 2b6h_A ADP-ribosylation factor 100.0 1.1E-30 3.8E-35 186.8 9.9 159 8-173 27-191 (192)
93 2h17_A ADP-ribosylation factor 100.0 6.8E-30 2.3E-34 180.9 13.7 156 8-170 19-180 (181)
94 2wkq_A NPH1-1, RAS-related C3 100.0 1.1E-28 3.9E-33 190.0 20.9 163 9-173 154-330 (332)
95 2x77_A ADP-ribosylation factor 100.0 2.4E-30 8.2E-35 184.3 10.7 160 8-174 20-185 (189)
96 3llu_A RAS-related GTP-binding 100.0 8.5E-30 2.9E-34 182.6 12.9 161 6-171 16-195 (196)
97 1fzq_A ADP-ribosylation factor 100.0 3.5E-30 1.2E-34 182.5 10.4 159 8-173 14-178 (181)
98 3th5_A RAS-related C3 botulinu 99.9 4.5E-32 1.5E-36 195.6 0.0 163 7-171 27-203 (204)
99 2zej_A Dardarin, leucine-rich 100.0 3.7E-30 1.3E-34 182.8 9.8 164 10-174 2-179 (184)
100 1moz_A ARL1, ADP-ribosylation 100.0 3.5E-30 1.2E-34 182.4 9.1 160 8-174 16-181 (183)
101 2wji_A Ferrous iron transport 100.0 4.2E-28 1.4E-32 169.3 14.4 153 10-171 3-163 (165)
102 3c5h_A Glucocorticoid receptor 100.0 4.3E-29 1.5E-33 185.9 8.6 165 6-172 15-254 (255)
103 2fh5_B SR-beta, signal recogni 100.0 1.1E-27 3.8E-32 173.7 15.3 159 8-170 5-213 (214)
104 2lkc_A Translation initiation 100.0 2.2E-27 7.4E-32 167.2 15.9 157 8-176 6-174 (178)
105 3lvq_E ARF-GAP with SH3 domain 100.0 6.1E-28 2.1E-32 195.4 12.3 164 8-178 320-489 (497)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 3.7E-27 1.3E-31 179.9 14.6 160 9-172 2-180 (307)
107 2qu8_A Putative nucleolar GTP- 99.9 7.1E-27 2.4E-31 171.2 15.5 165 8-175 27-207 (228)
108 3o47_A ADP-ribosylation factor 99.9 8E-28 2.8E-32 185.0 10.7 158 9-173 164-327 (329)
109 2wjg_A FEOB, ferrous iron tran 99.9 4.8E-27 1.7E-31 166.9 13.0 159 8-175 5-171 (188)
110 2cxx_A Probable GTP-binding pr 99.9 2.3E-27 7.8E-32 168.7 9.7 157 11-176 2-187 (190)
111 1svi_A GTP-binding protein YSX 99.9 3.6E-27 1.2E-31 168.5 10.2 158 8-172 21-194 (195)
112 3a1s_A Iron(II) transport prot 99.9 5.5E-26 1.9E-30 169.2 16.2 157 8-173 3-167 (258)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 1.2E-27 4.2E-32 181.5 6.3 157 12-175 1-176 (331)
114 3iev_A GTP-binding protein ERA 99.9 3E-26 1E-30 174.8 13.5 167 5-175 5-184 (308)
115 2gj8_A MNME, tRNA modification 99.9 7.3E-27 2.5E-31 164.1 8.9 155 9-173 3-166 (172)
116 3dpu_A RAB family protein; roc 99.9 4.2E-27 1.4E-31 191.9 8.0 165 7-175 38-210 (535)
117 2dyk_A GTP-binding protein; GT 99.9 6.6E-26 2.3E-30 157.0 12.6 150 11-171 2-160 (161)
118 3b1v_A Ferrous iron uptake tra 99.9 2.2E-26 7.4E-31 172.4 10.5 155 9-173 2-164 (272)
119 3iby_A Ferrous iron transport 99.9 3.6E-26 1.2E-30 170.0 10.7 151 11-170 2-164 (256)
120 3pqc_A Probable GTP-binding pr 99.9 2.2E-25 7.4E-30 159.0 13.0 156 8-173 21-194 (195)
121 3k53_A Ferrous iron transport 99.9 7.4E-25 2.5E-29 164.5 15.0 159 9-175 2-168 (271)
122 3i8s_A Ferrous iron transport 99.9 6.7E-26 2.3E-30 170.3 8.7 156 9-173 2-169 (274)
123 4dhe_A Probable GTP-binding pr 99.9 8.7E-26 3E-30 164.6 8.3 164 8-175 27-213 (223)
124 1nrj_B SR-beta, signal recogni 99.9 1.3E-25 4.3E-30 163.3 4.6 144 7-159 9-170 (218)
125 1wf3_A GTP-binding protein; GT 99.9 1.1E-24 3.6E-29 165.6 9.0 160 8-174 5-174 (301)
126 3gee_A MNME, tRNA modification 99.9 7.6E-24 2.6E-28 169.5 13.4 157 9-172 232-397 (476)
127 3sjy_A Translation initiation 99.9 4.8E-23 1.7E-27 162.6 17.3 168 5-175 3-194 (403)
128 2e87_A Hypothetical protein PH 99.9 4.6E-23 1.6E-27 160.3 16.3 162 8-174 165-337 (357)
129 2hjg_A GTP-binding protein ENG 99.9 8.7E-24 3E-28 168.4 10.2 163 9-177 174-353 (436)
130 1lnz_A SPO0B-associated GTP-bi 99.9 6.8E-24 2.3E-28 163.3 8.1 159 12-175 160-332 (342)
131 4dcu_A GTP-binding protein ENG 99.9 1.9E-23 6.6E-28 167.3 11.0 164 8-177 193-373 (456)
132 3qq5_A Small GTP-binding prote 99.9 2E-24 7E-29 170.3 5.2 159 7-174 31-197 (423)
133 1cip_A Protein (guanine nucleo 99.9 3.3E-23 1.1E-27 160.1 11.0 118 58-175 192-346 (353)
134 1s0u_A EIF-2-gamma, translatio 99.9 2.5E-22 8.7E-27 158.7 15.4 165 7-173 5-198 (408)
135 3lxx_A GTPase IMAP family memb 99.9 3.2E-22 1.1E-26 147.4 13.3 165 7-175 26-216 (239)
136 1kk1_A EIF2gamma; initiation o 99.9 3E-22 1E-26 158.4 14.0 167 5-173 5-200 (410)
137 1wb1_A Translation elongation 99.9 6.1E-22 2.1E-26 159.2 15.8 157 8-173 17-189 (482)
138 3lxw_A GTPase IMAP family memb 99.9 2.3E-22 7.9E-27 148.9 11.7 169 8-176 19-211 (247)
139 1mky_A Probable GTP-binding pr 99.9 4.8E-22 1.6E-26 158.5 14.3 152 11-174 2-167 (439)
140 2xtp_A GTPase IMAP family memb 99.9 1.3E-22 4.4E-27 151.4 10.2 165 7-175 19-210 (260)
141 2xtz_A Guanine nucleotide-bind 99.9 4.1E-22 1.4E-26 153.9 13.2 118 57-174 181-346 (354)
142 3ohm_A Guanine nucleotide-bind 99.9 3.8E-22 1.3E-26 152.1 12.4 119 57-175 165-320 (327)
143 1xzp_A Probable tRNA modificat 99.9 2.2E-22 7.5E-27 161.3 11.5 153 10-173 243-405 (482)
144 1ega_A Protein (GTP-binding pr 99.9 2.1E-22 7.2E-27 153.1 10.6 160 8-174 6-176 (301)
145 3cb4_D GTP-binding protein LEP 99.9 3.3E-22 1.1E-26 163.7 12.2 160 10-175 4-184 (599)
146 2qtf_A Protein HFLX, GTP-bindi 99.9 1.8E-21 6.1E-26 151.2 15.5 163 10-175 178-356 (364)
147 3geh_A MNME, tRNA modification 99.9 1.8E-22 6.2E-27 161.0 9.2 155 9-175 223-386 (462)
148 2ywe_A GTP-binding protein LEP 99.9 1.9E-21 6.4E-26 159.0 15.2 161 8-174 4-185 (600)
149 1zcb_A G alpha I/13; GTP-bindi 99.9 2.1E-21 7.2E-26 150.5 14.4 118 58-175 200-355 (362)
150 3p26_A Elongation factor 1 alp 99.9 6.5E-22 2.2E-26 159.4 11.5 153 8-162 31-227 (483)
151 2hjg_A GTP-binding protein ENG 99.9 4.2E-23 1.4E-27 164.4 4.2 154 11-174 4-166 (436)
152 3j2k_7 ERF3, eukaryotic polype 99.9 4.5E-21 1.5E-25 152.6 15.5 156 7-165 14-217 (439)
153 2ged_A SR-beta, signal recogni 99.9 5.1E-22 1.7E-26 141.5 8.8 116 8-132 46-173 (193)
154 3t5d_A Septin-7; GTP-binding p 99.9 1.8E-22 6.2E-27 151.6 6.6 162 7-172 5-203 (274)
155 3izy_P Translation initiation 99.9 1.9E-23 6.5E-28 168.7 0.2 162 9-175 3-170 (537)
156 1g7s_A Translation initiation 99.9 1.2E-20 4E-25 154.7 15.6 160 9-175 4-220 (594)
157 2qag_A Septin-2, protein NEDD5 99.9 1.9E-22 6.4E-27 156.8 4.7 164 8-177 35-237 (361)
158 1mky_A Probable GTP-binding pr 99.9 5.2E-21 1.8E-25 152.5 13.0 162 9-176 179-358 (439)
159 2c78_A Elongation factor TU-A; 99.9 3.8E-22 1.3E-26 157.6 6.1 150 6-159 7-180 (405)
160 1d2e_A Elongation factor TU (E 99.9 1.7E-21 5.7E-26 153.5 9.7 161 9-173 2-195 (397)
161 3tr5_A RF-3, peptide chain rel 99.9 6.5E-22 2.2E-26 160.2 6.8 117 9-129 12-148 (528)
162 1zun_B Sulfate adenylate trans 99.8 4.4E-21 1.5E-25 152.7 11.0 155 8-165 22-216 (434)
163 2elf_A Protein translation elo 99.8 1.6E-21 5.3E-26 151.9 8.0 147 12-174 23-181 (370)
164 4fid_A G protein alpha subunit 99.8 3.2E-21 1.1E-25 147.5 9.5 118 56-173 158-328 (340)
165 1jny_A EF-1-alpha, elongation 99.8 1.8E-22 6.2E-27 160.7 2.2 155 8-165 4-205 (435)
166 1azs_C GS-alpha; complex (lyas 99.8 4.3E-20 1.5E-24 144.3 14.5 117 58-174 216-386 (402)
167 4dcu_A GTP-binding protein ENG 99.8 1.1E-21 3.7E-26 157.1 5.6 156 9-174 22-186 (456)
168 3avx_A Elongation factor TS, e 99.8 1.4E-20 4.6E-25 161.4 8.8 162 7-172 293-485 (1289)
169 1r5b_A Eukaryotic peptide chai 99.8 3.3E-21 1.1E-25 154.5 3.9 154 8-164 41-243 (467)
170 1zo1_I IF2, translation initia 99.8 1.3E-21 4.4E-26 156.9 1.5 156 9-170 3-164 (501)
171 1f60_A Elongation factor EEF1A 99.8 7.8E-21 2.7E-25 152.0 5.7 153 8-163 5-202 (458)
172 3izq_1 HBS1P, elongation facto 99.8 1.5E-20 5E-25 154.8 7.0 154 8-163 165-362 (611)
173 1pui_A ENGB, probable GTP-bind 99.8 5.9E-20 2E-24 132.5 8.3 156 9-173 25-199 (210)
174 1udx_A The GTP-binding protein 99.8 1E-18 3.6E-23 137.5 13.8 161 12-176 159-328 (416)
175 2aka_B Dynamin-1; fusion prote 99.8 3.3E-20 1.1E-24 140.9 4.8 161 8-171 24-251 (299)
176 3def_A T7I23.11 protein; chlor 99.8 1.7E-18 6E-23 129.1 13.3 120 8-129 34-165 (262)
177 2dy1_A Elongation factor G; tr 99.8 9.6E-19 3.3E-23 145.6 12.7 117 8-128 7-139 (665)
178 3mca_A HBS1, elongation factor 99.8 2.2E-20 7.4E-25 153.4 2.8 151 8-161 175-371 (592)
179 1dar_A EF-G, elongation factor 99.8 1.2E-18 4.3E-23 145.4 11.7 119 7-129 9-143 (691)
180 3t34_A Dynamin-related protein 99.8 1.8E-19 6.1E-24 140.3 5.2 158 10-169 34-257 (360)
181 1h65_A Chloroplast outer envel 99.8 1.9E-18 6.5E-23 129.4 10.5 122 8-131 37-170 (270)
182 2j69_A Bacterial dynamin-like 99.8 3.6E-18 1.2E-22 142.7 13.2 162 9-173 68-325 (695)
183 2h5e_A Peptide chain release f 99.8 4.1E-18 1.4E-22 138.2 12.8 118 8-129 11-148 (529)
184 2rdo_7 EF-G, elongation factor 99.8 1.3E-17 4.6E-22 139.4 16.1 125 1-129 1-148 (704)
185 2xex_A Elongation factor G; GT 99.8 2.9E-18 9.8E-23 143.2 11.9 125 1-129 1-141 (693)
186 2qnr_A Septin-2, protein NEDD5 99.8 1.2E-19 4.2E-24 137.8 3.0 164 8-176 16-217 (301)
187 1jwy_B Dynamin A GTPase domain 99.8 2.4E-18 8.1E-23 131.6 8.8 113 59-174 131-263 (315)
188 2qag_C Septin-7; cell cycle, c 99.7 6.6E-18 2.2E-22 133.0 9.9 160 8-171 29-225 (418)
189 1wxq_A GTP-binding protein; st 99.7 2.9E-18 1E-22 134.5 6.7 85 11-95 1-114 (397)
190 1u0l_A Probable GTPase ENGC; p 99.7 3.6E-18 1.2E-22 129.8 5.7 134 25-169 32-169 (301)
191 2wsm_A Hydrogenase expression/ 99.7 5.7E-17 1.9E-21 117.7 7.8 154 10-174 30-215 (221)
192 3p32_A Probable GTPase RV1496/ 99.7 2.6E-17 9E-22 127.8 5.7 104 58-173 171-284 (355)
193 1jal_A YCHF protein; nucleotid 99.7 1.1E-15 3.6E-20 118.1 14.5 85 10-94 2-108 (363)
194 3vqt_A RF-3, peptide chain rel 99.7 2.7E-16 9.1E-21 128.1 10.4 117 9-129 30-166 (548)
195 2x2e_A Dynamin-1; nitration, h 99.6 3.1E-18 1.1E-22 132.9 -2.9 158 9-169 30-254 (353)
196 2hf9_A Probable hydrogenase ni 99.6 8.6E-18 2.9E-22 122.5 -2.8 154 9-173 37-224 (226)
197 2qpt_A EH domain-containing pr 99.6 1.8E-16 6.2E-21 129.2 4.4 121 8-131 63-234 (550)
198 2www_A Methylmalonic aciduria 99.6 2.5E-15 8.4E-20 116.3 10.2 104 58-173 166-279 (349)
199 4fn5_A EF-G 1, elongation fact 99.6 1.3E-14 4.5E-19 121.7 14.9 124 1-128 4-150 (709)
200 1n0u_A EF-2, elongation factor 99.6 1.8E-15 6.1E-20 128.9 9.0 118 8-129 17-164 (842)
201 2dby_A GTP-binding protein; GD 99.6 7.9E-15 2.7E-19 113.8 10.3 154 11-164 2-253 (368)
202 2p67_A LAO/AO transport system 99.6 9.6E-16 3.3E-20 118.3 2.7 104 58-172 148-260 (341)
203 1yrb_A ATP(GTP)binding protein 99.5 3E-14 1E-18 105.9 10.3 113 59-174 109-258 (262)
204 3j25_A Tetracycline resistance 99.5 9.9E-16 3.4E-20 127.0 1.7 115 11-129 3-133 (638)
205 4a9a_A Ribosome-interacting GT 99.5 2.8E-13 9.5E-18 105.1 14.9 152 10-165 72-240 (376)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 4E-14 1.4E-18 118.3 7.4 156 9-170 50-275 (772)
207 2qm8_A GTPase/ATPase; G protei 99.5 6.7E-14 2.3E-18 107.7 7.8 104 58-172 147-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 4E-13 1.4E-17 102.0 9.2 97 69-168 66-164 (302)
209 3l82_B F-box only protein 4; T 99.4 2.7E-13 9.4E-18 95.9 4.1 106 66-174 109-224 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 7.3E-13 2.5E-17 103.3 4.6 87 9-95 21-129 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4.1E-11 1.4E-15 93.5 13.9 86 9-94 19-127 (392)
212 3l2o_B F-box only protein 4; s 99.3 5.3E-12 1.8E-16 93.6 5.5 107 66-174 194-309 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 1.6E-11 5.4E-16 95.7 0.8 143 10-160 162-318 (369)
214 3h2y_A GTPase family protein; 99.1 9.9E-12 3.4E-16 96.7 -1.3 137 10-154 160-311 (368)
215 2qag_B Septin-6, protein NEDD5 99.0 9.3E-10 3.2E-14 86.6 7.3 140 10-154 42-217 (427)
216 3sop_A Neuronal-specific septi 99.0 1.8E-09 6.2E-14 80.5 7.6 137 10-152 2-179 (270)
217 3h2y_A GTPase family protein; 98.9 1.4E-09 4.7E-14 84.7 6.5 97 68-171 55-158 (368)
218 2j37_W Signal recognition part 98.9 2.9E-10 9.9E-15 91.5 2.3 151 9-170 100-310 (504)
219 1tq4_A IIGP1, interferon-induc 98.9 4.1E-08 1.4E-12 77.2 13.5 158 10-174 69-254 (413)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 3.7E-09 1.3E-13 82.3 3.6 97 68-171 57-160 (369)
221 1puj_A YLQF, conserved hypothe 98.7 9.7E-09 3.3E-13 77.0 5.4 100 64-173 4-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 2.6E-08 9E-13 74.7 5.1 59 9-71 119-177 (282)
223 3cnl_A YLQF, putative uncharac 98.6 1.9E-08 6.5E-13 74.7 2.7 58 11-72 100-157 (262)
224 3dm5_A SRP54, signal recogniti 98.5 1.8E-07 6E-12 74.1 5.5 136 9-154 99-274 (443)
225 1f5n_A Interferon-induced guan 98.4 4.6E-07 1.6E-11 74.3 5.8 64 8-71 36-103 (592)
226 3kl4_A SRP54, signal recogniti 98.3 1.5E-07 5.1E-12 74.4 0.9 87 58-154 179-273 (433)
227 3cnl_A YLQF, putative uncharac 98.3 2.9E-07 9.9E-12 68.3 2.3 93 67-170 5-98 (262)
228 2v3c_C SRP54, signal recogniti 98.2 2.5E-06 8.5E-11 67.6 7.1 84 58-152 180-271 (432)
229 3szr_A Interferon-induced GTP- 98.1 2.7E-06 9.4E-11 70.3 5.0 23 12-34 47-69 (608)
230 1t9h_A YLOQ, probable GTPase E 98.1 1.4E-06 4.8E-11 65.9 3.0 89 74-165 78-169 (307)
231 1j8m_F SRP54, signal recogniti 98.1 6.8E-06 2.3E-10 62.0 6.2 92 58-162 180-280 (297)
232 1bif_A 6-phosphofructo-2-kinas 97.9 3.7E-07 1.3E-11 73.3 -3.2 101 9-111 38-148 (469)
233 2rcn_A Probable GTPase ENGC; Y 97.9 5.7E-05 2E-09 58.2 8.5 84 79-166 127-212 (358)
234 3q5d_A Atlastin-1; G protein, 97.8 2.4E-05 8.3E-10 62.1 5.8 26 8-33 65-90 (447)
235 1ye8_A Protein THEP1, hypothet 97.8 1.5E-05 5.3E-10 55.5 3.5 23 11-33 1-23 (178)
236 1kgd_A CASK, peripheral plasma 97.7 2.2E-05 7.5E-10 54.7 3.3 23 11-33 6-28 (180)
237 1lvg_A Guanylate kinase, GMP k 97.7 2.7E-05 9.4E-10 55.1 3.3 22 12-33 6-27 (198)
238 2yv5_A YJEQ protein; hydrolase 97.6 0.00014 4.7E-09 55.0 6.6 21 11-31 166-186 (302)
239 1t9h_A YLOQ, probable GTPase E 97.6 1.8E-05 6E-10 59.9 1.6 23 11-33 174-196 (307)
240 3tr0_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 54.2 3.3 22 12-33 9-30 (205)
241 1zp6_A Hypothetical protein AT 97.6 3.9E-05 1.3E-09 53.7 3.0 23 11-33 10-32 (191)
242 3a00_A Guanylate kinase, GMP k 97.6 4.2E-05 1.4E-09 53.5 3.2 21 13-33 4-24 (186)
243 1ex7_A Guanylate kinase; subst 97.6 9.2E-06 3.1E-10 57.0 -0.3 21 13-33 4-24 (186)
244 1knq_A Gluconate kinase; ALFA/ 97.6 7.6E-05 2.6E-09 51.5 4.3 23 10-32 8-30 (175)
245 1znw_A Guanylate kinase, GMP k 97.5 4.9E-05 1.7E-09 54.1 3.2 23 12-34 22-44 (207)
246 1s96_A Guanylate kinase, GMP k 97.5 5.1E-05 1.7E-09 54.6 3.3 24 11-34 17-40 (219)
247 1z6g_A Guanylate kinase; struc 97.5 5.5E-05 1.9E-09 54.4 3.2 23 12-34 25-47 (218)
248 3ney_A 55 kDa erythrocyte memb 97.5 6.2E-05 2.1E-09 53.2 3.3 25 9-33 18-42 (197)
249 4dzz_A Plasmid partitioning pr 97.5 0.00033 1.1E-08 49.4 7.1 85 59-150 76-162 (206)
250 3c8u_A Fructokinase; YP_612366 97.5 7E-05 2.4E-09 53.3 3.6 26 8-33 20-45 (208)
251 3tau_A Guanylate kinase, GMP k 97.5 7.3E-05 2.5E-09 53.3 3.3 24 11-34 9-32 (208)
252 1kag_A SKI, shikimate kinase I 97.5 7.6E-05 2.6E-09 51.3 3.3 23 11-33 5-27 (173)
253 4gp7_A Metallophosphoesterase; 97.4 5.9E-05 2E-09 52.1 2.5 20 12-31 11-30 (171)
254 4eun_A Thermoresistant glucoki 97.4 0.0001 3.5E-09 52.1 3.5 23 10-32 29-51 (200)
255 3tif_A Uncharacterized ABC tra 97.4 7.4E-05 2.5E-09 54.4 2.9 22 12-33 33-54 (235)
256 1htw_A HI0065; nucleotide-bind 97.4 9.8E-05 3.3E-09 50.3 3.2 23 12-34 35-57 (158)
257 2bdt_A BH3686; alpha-beta prot 97.4 9.5E-05 3.3E-09 51.7 3.2 21 12-32 4-24 (189)
258 2qor_A Guanylate kinase; phosp 97.4 9.6E-05 3.3E-09 52.4 3.3 24 10-33 12-35 (204)
259 2j41_A Guanylate kinase; GMP, 97.4 9.4E-05 3.2E-09 52.3 3.2 24 11-34 7-30 (207)
260 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.6E-09 50.4 3.2 21 12-32 3-23 (173)
261 1ly1_A Polynucleotide kinase; 97.4 0.00013 4.6E-09 50.3 3.7 22 11-32 3-24 (181)
262 3asz_A Uridine kinase; cytidin 97.4 0.00012 4.2E-09 52.0 3.5 25 9-33 5-29 (211)
263 2onk_A Molybdate/tungstate ABC 97.4 0.00011 3.7E-09 53.6 3.2 22 12-33 26-47 (240)
264 2rcn_A Probable GTPase ENGC; Y 97.4 0.00011 3.7E-09 56.7 3.3 23 12-34 217-239 (358)
265 2xxa_A Signal recognition part 97.4 0.00062 2.1E-08 54.0 7.7 84 58-152 183-273 (433)
266 2pcj_A ABC transporter, lipopr 97.4 9.1E-05 3.1E-09 53.5 2.7 22 12-33 32-53 (224)
267 3fb4_A Adenylate kinase; psych 97.3 0.00013 4.5E-09 52.1 3.5 22 11-32 1-22 (216)
268 3lw7_A Adenylate kinase relate 97.3 0.00012 4E-09 50.2 3.0 20 11-30 2-21 (179)
269 3dl0_A Adenylate kinase; phosp 97.3 0.00014 4.7E-09 52.0 3.5 22 11-32 1-22 (216)
270 3sr0_A Adenylate kinase; phosp 97.3 0.00015 5.2E-09 51.6 3.5 22 11-32 1-22 (206)
271 2bbw_A Adenylate kinase 4, AK4 97.3 0.00014 4.7E-09 53.1 3.3 21 11-31 28-48 (246)
272 1sgw_A Putative ABC transporte 97.3 0.00012 4.2E-09 52.4 2.9 22 12-33 37-58 (214)
273 1b0u_A Histidine permease; ABC 97.3 0.00012 4.1E-09 54.2 2.9 22 12-33 34-55 (262)
274 3gfo_A Cobalt import ATP-bindi 97.3 0.00012 4.1E-09 54.5 2.9 22 12-33 36-57 (275)
275 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.3E-09 50.0 3.3 23 11-33 4-26 (178)
276 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5.1E-09 51.3 3.2 23 11-33 19-41 (202)
277 3umf_A Adenylate kinase; rossm 97.3 0.00023 7.8E-09 51.1 4.2 21 12-32 31-51 (217)
278 2cbz_A Multidrug resistance-as 97.3 0.00012 4.2E-09 53.2 2.9 22 12-33 33-54 (237)
279 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6.2E-09 50.7 3.5 22 11-32 26-47 (199)
280 4g1u_C Hemin import ATP-bindin 97.3 0.00013 4.4E-09 54.1 2.8 22 12-33 39-60 (266)
281 1g6h_A High-affinity branched- 97.3 0.00013 4.5E-09 53.7 2.9 22 12-33 35-56 (257)
282 2v9p_A Replication protein E1; 97.3 0.00017 5.8E-09 54.5 3.4 22 12-33 128-149 (305)
283 1mv5_A LMRA, multidrug resista 97.3 0.00016 5.3E-09 52.9 3.1 22 12-33 30-51 (243)
284 2if2_A Dephospho-COA kinase; a 97.3 0.00018 6.1E-09 50.9 3.3 22 11-32 2-23 (204)
285 2olj_A Amino acid ABC transpor 97.3 0.00014 4.9E-09 53.7 2.9 22 12-33 52-73 (263)
286 2eyu_A Twitching motility prot 97.3 0.00017 5.7E-09 53.4 3.2 22 12-33 27-48 (261)
287 2ff7_A Alpha-hemolysin translo 97.3 0.00016 5.5E-09 53.0 3.1 22 12-33 37-58 (247)
288 2pze_A Cystic fibrosis transme 97.3 0.00015 5.1E-09 52.5 2.9 22 12-33 36-57 (229)
289 2i3b_A HCR-ntpase, human cance 97.3 0.00019 6.4E-09 50.4 3.3 22 12-33 3-24 (189)
290 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00017 5.7E-09 53.0 3.2 22 12-33 31-52 (250)
291 3uie_A Adenylyl-sulfate kinase 97.2 0.00018 6.1E-09 50.8 3.2 24 10-33 25-48 (200)
292 1cke_A CK, MSSA, protein (cyti 97.2 0.0002 6.7E-09 51.5 3.5 22 11-32 6-27 (227)
293 3b85_A Phosphate starvation-in 97.2 0.00013 4.3E-09 52.1 2.5 22 12-33 24-45 (208)
294 1ji0_A ABC transporter; ATP bi 97.2 0.00015 5E-09 52.9 2.9 22 12-33 34-55 (240)
295 3aez_A Pantothenate kinase; tr 97.2 0.00017 6E-09 54.7 3.3 26 8-33 88-113 (312)
296 3ec2_A DNA replication protein 97.2 0.00017 5.8E-09 50.0 3.0 24 10-33 38-61 (180)
297 1vpl_A ABC transporter, ATP-bi 97.2 0.00016 5.3E-09 53.3 2.9 22 12-33 43-64 (256)
298 2jaq_A Deoxyguanosine kinase; 97.2 0.00021 7.2E-09 50.3 3.5 21 12-32 2-22 (205)
299 2qi9_C Vitamin B12 import ATP- 97.2 0.00016 5.6E-09 53.0 2.9 22 12-33 28-49 (249)
300 3cm0_A Adenylate kinase; ATP-b 97.2 0.00026 9E-09 49.1 3.9 23 10-32 4-26 (186)
301 2cdn_A Adenylate kinase; phosp 97.2 0.00026 8.8E-09 50.0 3.9 25 8-32 18-42 (201)
302 2zu0_C Probable ATP-dependent 97.2 0.00019 6.4E-09 53.2 3.2 22 12-33 48-69 (267)
303 1jjv_A Dephospho-COA kinase; P 97.2 0.00023 7.9E-09 50.4 3.6 22 11-32 3-24 (206)
304 2ghi_A Transport protein; mult 97.2 0.00019 6.5E-09 53.0 3.1 22 12-33 48-69 (260)
305 1nks_A Adenylate kinase; therm 97.2 0.00024 8.4E-09 49.5 3.5 21 12-32 3-23 (194)
306 2rhm_A Putative kinase; P-loop 97.2 0.00026 8.7E-09 49.4 3.6 23 10-32 5-27 (193)
307 2ixe_A Antigen peptide transpo 97.2 0.00018 6E-09 53.5 2.9 22 12-33 47-68 (271)
308 2yvu_A Probable adenylyl-sulfa 97.2 0.00035 1.2E-08 48.7 4.2 25 8-32 11-35 (186)
309 1u0l_A Probable GTPase ENGC; p 97.2 0.00016 5.6E-09 54.5 2.7 24 11-34 170-193 (301)
310 2qt1_A Nicotinamide riboside k 97.2 0.0003 1E-08 49.9 3.9 25 9-33 20-44 (207)
311 2ihy_A ABC transporter, ATP-bi 97.2 0.00021 7.2E-09 53.3 3.1 22 12-33 49-70 (279)
312 2nq2_C Hypothetical ABC transp 97.2 0.00019 6.5E-09 52.8 2.8 22 12-33 33-54 (253)
313 3lnc_A Guanylate kinase, GMP k 97.2 0.00013 4.3E-09 52.8 1.9 22 12-33 29-51 (231)
314 1np6_A Molybdopterin-guanine d 97.2 0.00025 8.6E-09 49.1 3.3 23 11-33 7-29 (174)
315 1e4v_A Adenylate kinase; trans 97.2 0.00024 8.2E-09 50.7 3.3 22 11-32 1-22 (214)
316 3tlx_A Adenylate kinase 2; str 97.2 0.0003 1E-08 51.3 3.8 24 9-32 28-51 (243)
317 2yz2_A Putative ABC transporte 97.2 0.0002 6.9E-09 53.1 2.9 22 12-33 35-56 (266)
318 3tqc_A Pantothenate kinase; bi 97.2 0.00039 1.3E-08 52.9 4.5 26 7-32 89-114 (321)
319 1kht_A Adenylate kinase; phosp 97.2 0.00028 9.7E-09 49.1 3.5 22 11-32 4-25 (192)
320 3trf_A Shikimate kinase, SK; a 97.2 0.00029 9.8E-09 48.9 3.5 22 11-32 6-27 (185)
321 4a74_A DNA repair and recombin 97.2 0.00023 7.8E-09 51.1 3.1 22 12-33 27-48 (231)
322 1y63_A LMAJ004144AAA protein; 97.2 0.00033 1.1E-08 48.8 3.8 24 10-33 10-33 (184)
323 3cwq_A Para family chromosome 97.2 0.00049 1.7E-08 49.0 4.7 86 58-150 67-153 (209)
324 1tev_A UMP-CMP kinase; ploop, 97.1 0.00033 1.1E-08 48.9 3.7 23 10-32 3-25 (196)
325 1gvn_B Zeta; postsegregational 97.1 0.00037 1.3E-08 52.2 4.2 25 8-32 31-55 (287)
326 2plr_A DTMP kinase, probable t 97.1 0.00034 1.2E-08 49.5 3.8 23 10-32 4-26 (213)
327 3end_A Light-independent proto 97.1 0.0083 2.8E-07 45.1 11.6 85 58-151 156-242 (307)
328 2ehv_A Hypothetical protein PH 97.1 0.00027 9.2E-09 51.4 3.2 21 12-32 32-52 (251)
329 1aky_A Adenylate kinase; ATP:A 97.1 0.00032 1.1E-08 50.2 3.5 23 10-32 4-26 (220)
330 2pjz_A Hypothetical protein ST 97.1 0.00027 9.2E-09 52.3 3.1 23 12-34 32-54 (263)
331 2pt5_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 47.7 3.5 21 12-32 2-22 (168)
332 2f1r_A Molybdopterin-guanine d 97.1 0.00015 5.3E-09 50.0 1.7 22 12-33 4-25 (171)
333 1via_A Shikimate kinase; struc 97.1 0.00027 9.4E-09 48.7 2.9 21 12-32 6-26 (175)
334 1lw7_A Transcriptional regulat 97.1 0.00027 9.3E-09 54.7 3.2 24 10-33 170-193 (365)
335 3iij_A Coilin-interacting nucl 97.1 0.00034 1.2E-08 48.4 3.4 23 10-32 11-33 (180)
336 2jeo_A Uridine-cytidine kinase 97.1 0.00039 1.3E-08 50.7 3.7 23 10-32 25-47 (245)
337 1odf_A YGR205W, hypothetical 3 97.1 0.00046 1.6E-08 51.8 4.2 25 8-32 29-53 (290)
338 1ukz_A Uridylate kinase; trans 97.1 0.00052 1.8E-08 48.4 4.3 23 10-32 15-37 (203)
339 2x8a_A Nuclear valosin-contain 97.1 0.00032 1.1E-08 52.2 3.2 22 12-33 46-67 (274)
340 1zd8_A GTP:AMP phosphotransfer 97.1 0.00036 1.2E-08 50.2 3.4 23 10-32 7-29 (227)
341 2p5t_B PEZT; postsegregational 97.1 0.00035 1.2E-08 51.3 3.4 26 7-32 29-54 (253)
342 2wwf_A Thymidilate kinase, put 97.1 0.00045 1.5E-08 49.0 3.8 23 10-32 10-32 (212)
343 3nh6_A ATP-binding cassette SU 97.1 0.00021 7.2E-09 54.0 2.2 22 12-33 82-103 (306)
344 3fvq_A Fe(3+) IONS import ATP- 97.1 0.0003 1E-08 54.3 3.0 23 12-34 32-54 (359)
345 3tui_C Methionine import ATP-b 97.1 0.00033 1.1E-08 54.1 3.2 22 12-33 56-77 (366)
346 2kjq_A DNAA-related protein; s 97.0 0.00024 8.2E-09 47.9 2.1 22 12-33 38-59 (149)
347 2ze6_A Isopentenyl transferase 97.0 0.00038 1.3E-08 51.2 3.3 21 12-32 3-23 (253)
348 3jvv_A Twitching mobility prot 97.0 0.00035 1.2E-08 53.9 3.2 22 12-33 125-146 (356)
349 1z47_A CYSA, putative ABC-tran 97.0 0.00035 1.2E-08 53.9 3.2 22 12-33 43-64 (355)
350 2xb4_A Adenylate kinase; ATP-b 97.0 0.00043 1.5E-08 49.8 3.5 22 11-32 1-22 (223)
351 2yyz_A Sugar ABC transporter, 97.0 0.00037 1.3E-08 53.8 3.2 22 12-33 31-52 (359)
352 1sq5_A Pantothenate kinase; P- 97.0 0.00051 1.8E-08 51.9 3.9 25 9-33 79-103 (308)
353 1rz3_A Hypothetical protein rb 97.0 0.00055 1.9E-08 48.3 3.8 24 9-32 21-44 (201)
354 2bbs_A Cystic fibrosis transme 97.0 0.00035 1.2E-08 52.4 2.9 22 12-33 66-87 (290)
355 2it1_A 362AA long hypothetical 97.0 0.00039 1.3E-08 53.7 3.2 22 12-33 31-52 (362)
356 1ixz_A ATP-dependent metallopr 97.0 0.00042 1.4E-08 50.7 3.3 22 12-33 51-72 (254)
357 2v54_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 48.4 3.5 24 10-33 4-27 (204)
358 3rlf_A Maltose/maltodextrin im 97.0 0.00041 1.4E-08 54.0 3.2 22 12-33 31-52 (381)
359 3be4_A Adenylate kinase; malar 97.0 0.00045 1.5E-08 49.4 3.2 23 10-32 5-27 (217)
360 1zak_A Adenylate kinase; ATP:A 97.0 0.00037 1.3E-08 49.9 2.8 23 10-32 5-27 (222)
361 1g29_1 MALK, maltose transport 97.0 0.00042 1.4E-08 53.8 3.2 23 12-34 31-53 (372)
362 1v43_A Sugar-binding transport 97.0 0.00043 1.5E-08 53.7 3.2 22 12-33 39-60 (372)
363 2pbr_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 47.8 3.4 21 12-32 2-22 (195)
364 2c95_A Adenylate kinase 1; tra 97.0 0.00048 1.7E-08 48.1 3.2 23 10-32 9-31 (196)
365 1uf9_A TT1252 protein; P-loop, 97.0 0.00059 2E-08 48.0 3.7 25 9-33 7-31 (203)
366 1rj9_A FTSY, signal recognitio 97.0 0.00047 1.6E-08 52.1 3.2 23 10-32 102-124 (304)
367 1qf9_A UMP/CMP kinase, protein 96.9 0.0007 2.4E-08 47.1 3.9 23 10-32 6-28 (194)
368 1nn5_A Similar to deoxythymidy 96.9 0.00056 1.9E-08 48.5 3.4 23 10-32 9-31 (215)
369 2chg_A Replication factor C sm 96.9 0.0011 3.8E-08 46.9 4.9 21 13-33 41-61 (226)
370 2bwj_A Adenylate kinase 5; pho 96.9 0.00056 1.9E-08 47.9 3.3 23 10-32 12-34 (199)
371 1xjc_A MOBB protein homolog; s 96.9 0.00059 2E-08 46.9 3.3 22 11-32 5-26 (169)
372 1uj2_A Uridine-cytidine kinase 96.9 0.00063 2.2E-08 49.8 3.7 24 9-32 21-44 (252)
373 3d31_A Sulfate/molybdate ABC t 96.9 0.00035 1.2E-08 53.7 2.3 22 12-33 28-49 (348)
374 2gza_A Type IV secretion syste 96.9 0.00045 1.5E-08 53.5 2.9 23 11-33 176-198 (361)
375 1e6c_A Shikimate kinase; phosp 96.9 0.00061 2.1E-08 46.6 3.3 21 12-32 4-24 (173)
376 2z0h_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 47.8 3.2 21 12-32 2-22 (197)
377 2ewv_A Twitching motility prot 96.9 0.00056 1.9E-08 53.2 3.4 22 12-33 138-159 (372)
378 1jbk_A CLPB protein; beta barr 96.9 0.00068 2.3E-08 46.8 3.5 24 10-33 43-66 (195)
379 2iyv_A Shikimate kinase, SK; t 96.9 0.00061 2.1E-08 47.2 3.2 21 12-32 4-24 (184)
380 2pez_A Bifunctional 3'-phospho 96.9 0.00077 2.6E-08 46.6 3.7 23 10-32 5-27 (179)
381 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00059 2E-08 50.3 3.3 22 11-32 5-26 (260)
382 3co5_A Putative two-component 96.9 0.00065 2.2E-08 45.3 3.2 23 10-32 27-49 (143)
383 3b9q_A Chloroplast SRP recepto 96.9 0.00058 2E-08 51.5 3.3 23 10-32 100-122 (302)
384 2vli_A Antibiotic resistance p 96.9 0.0004 1.4E-08 48.0 2.3 23 10-32 5-27 (183)
385 3foz_A TRNA delta(2)-isopenten 96.9 0.00079 2.7E-08 50.8 4.0 32 1-32 1-32 (316)
386 1gtv_A TMK, thymidylate kinase 96.9 0.00023 7.9E-09 50.6 1.0 21 12-32 2-22 (214)
387 4e22_A Cytidylate kinase; P-lo 96.9 0.00065 2.2E-08 49.8 3.5 21 11-31 28-48 (252)
388 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00042 1.4E-08 53.0 2.5 22 12-33 173-194 (330)
389 1in4_A RUVB, holliday junction 96.9 0.00059 2E-08 52.2 3.2 22 12-33 53-74 (334)
390 1ak2_A Adenylate kinase isoenz 96.9 0.00074 2.5E-08 48.8 3.6 23 10-32 16-38 (233)
391 1iy2_A ATP-dependent metallopr 96.9 0.00062 2.1E-08 50.6 3.3 22 12-33 75-96 (278)
392 1zuh_A Shikimate kinase; alpha 96.9 0.00078 2.7E-08 46.0 3.5 21 12-32 9-29 (168)
393 1p9r_A General secretion pathw 96.9 0.0006 2.1E-08 53.8 3.2 22 12-33 169-190 (418)
394 2vp4_A Deoxynucleoside kinase; 96.9 0.00064 2.2E-08 49.1 3.2 26 8-33 18-43 (230)
395 1vht_A Dephospho-COA kinase; s 96.8 0.00091 3.1E-08 47.7 3.8 23 10-32 4-26 (218)
396 3gd7_A Fusion complex of cysti 96.8 0.00061 2.1E-08 53.2 3.0 21 12-32 49-69 (390)
397 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00074 2.5E-08 48.4 3.2 22 12-33 25-46 (235)
398 1oxx_K GLCV, glucose, ABC tran 96.8 0.00035 1.2E-08 53.9 1.6 23 12-34 33-55 (353)
399 3e70_C DPA, signal recognition 96.8 0.001 3.6E-08 50.7 4.0 140 9-160 128-307 (328)
400 3r20_A Cytidylate kinase; stru 96.8 0.00094 3.2E-08 48.4 3.5 24 9-32 8-31 (233)
401 1nij_A Hypothetical protein YJ 96.8 0.00057 1.9E-08 52.0 2.5 23 12-34 6-28 (318)
402 3kta_A Chromosome segregation 96.8 0.00083 2.8E-08 46.4 3.1 21 12-32 28-48 (182)
403 2oap_1 GSPE-2, type II secreti 96.8 0.00069 2.4E-08 54.8 3.0 23 12-34 262-284 (511)
404 2f6r_A COA synthase, bifunctio 96.8 0.0012 4E-08 49.3 4.0 24 9-32 74-97 (281)
405 3nwj_A ATSK2; P loop, shikimat 96.7 0.00093 3.2E-08 49.0 3.2 22 11-32 49-70 (250)
406 2grj_A Dephospho-COA kinase; T 96.7 0.0013 4.3E-08 46.3 3.8 25 8-32 10-34 (192)
407 1cr0_A DNA primase/helicase; R 96.7 0.00083 2.8E-08 50.3 3.1 23 12-34 37-59 (296)
408 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00081 2.8E-08 53.7 3.1 22 12-33 140-161 (460)
409 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.8E-08 48.5 3.6 24 10-33 45-68 (257)
410 2p65_A Hypothetical protein PF 96.7 0.00083 2.8E-08 46.2 2.7 24 10-33 43-66 (187)
411 2og2_A Putative signal recogni 96.7 0.00098 3.4E-08 51.5 3.3 23 10-32 157-179 (359)
412 4eaq_A DTMP kinase, thymidylat 96.7 0.0016 5.4E-08 47.1 4.1 25 9-33 25-49 (229)
413 1m7g_A Adenylylsulfate kinase; 96.7 0.0014 4.7E-08 46.6 3.8 23 10-32 25-47 (211)
414 3bos_A Putative DNA replicatio 96.7 0.0012 4.2E-08 47.4 3.5 24 10-33 52-75 (242)
415 2yhs_A FTSY, cell division pro 96.7 0.0011 3.6E-08 53.3 3.3 23 10-32 293-315 (503)
416 1svm_A Large T antigen; AAA+ f 96.7 0.0011 3.7E-08 51.6 3.2 22 11-32 170-191 (377)
417 2w58_A DNAI, primosome compone 96.7 0.0013 4.6E-08 46.2 3.5 23 11-33 55-77 (202)
418 1n0w_A DNA repair protein RAD5 96.7 0.0012 4.1E-08 47.7 3.3 22 12-33 26-47 (243)
419 1ltq_A Polynucleotide kinase; 96.7 0.0014 4.7E-08 49.2 3.7 22 11-32 3-24 (301)
420 2obl_A ESCN; ATPase, hydrolase 96.6 0.0012 4E-08 50.9 3.4 23 12-34 73-95 (347)
421 2cvh_A DNA repair and recombin 96.6 0.0012 4.1E-08 46.9 3.2 21 12-32 22-42 (220)
422 3t15_A Ribulose bisphosphate c 96.6 0.0018 6.1E-08 48.6 4.1 26 8-33 34-59 (293)
423 3euj_A Chromosome partition pr 96.6 0.0013 4.4E-08 52.7 3.3 21 12-32 31-51 (483)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0015 5.2E-08 43.9 3.2 20 13-32 26-45 (149)
425 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0065 2.2E-07 48.2 7.1 24 8-31 65-88 (457)
426 3d3q_A TRNA delta(2)-isopenten 96.6 0.0017 5.9E-08 49.6 3.7 22 11-32 8-29 (340)
427 3gmt_A Adenylate kinase; ssgci 96.5 0.0018 6.1E-08 46.8 3.5 25 8-32 6-30 (230)
428 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0015 5.2E-08 53.2 3.5 23 12-34 49-71 (538)
429 3n70_A Transport activator; si 96.5 0.0018 6E-08 43.2 3.2 25 10-34 24-48 (145)
430 1tue_A Replication protein E1; 96.5 0.0014 4.9E-08 46.4 2.7 21 12-32 60-80 (212)
431 3b9p_A CG5977-PA, isoform A; A 96.5 0.0018 6.2E-08 48.4 3.4 24 10-33 54-77 (297)
432 2dpy_A FLII, flagellum-specifi 96.5 0.0017 5.8E-08 51.5 3.4 23 12-34 159-181 (438)
433 3syl_A Protein CBBX; photosynt 96.5 0.0022 7.4E-08 48.2 3.8 25 8-32 65-89 (309)
434 3h4m_A Proteasome-activating n 96.5 0.0019 6.6E-08 47.9 3.4 24 10-33 51-74 (285)
435 3b60_A Lipid A export ATP-bind 96.4 0.0015 5.1E-08 53.8 3.0 22 12-33 371-392 (582)
436 3j16_B RLI1P; ribosome recycli 96.4 0.0017 5.7E-08 53.7 3.2 23 12-34 105-127 (608)
437 1njg_A DNA polymerase III subu 96.4 0.0019 6.6E-08 46.2 3.2 22 12-33 47-68 (250)
438 1q3t_A Cytidylate kinase; nucl 96.4 0.0023 7.8E-08 46.3 3.6 24 9-32 15-38 (236)
439 3ozx_A RNAse L inhibitor; ATP 96.4 0.0015 5.3E-08 53.2 2.9 23 12-34 27-49 (538)
440 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0023 7.9E-08 46.8 3.6 23 10-32 39-61 (262)
441 3ake_A Cytidylate kinase; CMP 96.4 0.0023 7.8E-08 45.1 3.5 21 12-32 4-24 (208)
442 3b5x_A Lipid A export ATP-bind 96.4 0.0018 6E-08 53.4 3.2 22 12-33 371-392 (582)
443 4fcw_A Chaperone protein CLPB; 96.4 0.003 1E-07 47.4 4.3 24 10-33 47-70 (311)
444 2qmh_A HPR kinase/phosphorylas 96.4 0.0019 6.6E-08 45.5 2.9 24 10-33 34-57 (205)
445 1nlf_A Regulatory protein REPA 96.4 0.0019 6.6E-08 47.9 3.1 21 12-32 32-52 (279)
446 1d2n_A N-ethylmaleimide-sensit 96.4 0.0032 1.1E-07 46.5 4.2 26 8-33 62-87 (272)
447 3cf0_A Transitional endoplasmi 96.4 0.0023 7.7E-08 48.2 3.4 24 10-33 49-72 (301)
448 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0021 7.2E-08 49.8 3.2 19 13-31 26-44 (365)
449 3bk7_A ABC transporter ATP-bin 96.3 0.0021 7.1E-08 53.2 3.1 23 12-34 119-141 (607)
450 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0034 1.1E-07 48.3 4.0 24 9-32 23-46 (359)
451 1l8q_A Chromosomal replication 96.3 0.0024 8.1E-08 48.5 3.2 23 11-33 38-60 (324)
452 3zvl_A Bifunctional polynucleo 96.3 0.0034 1.2E-07 49.5 4.1 23 10-32 258-280 (416)
453 2yl4_A ATP-binding cassette SU 96.3 0.0016 5.4E-08 53.8 2.2 22 12-33 372-393 (595)
454 3crm_A TRNA delta(2)-isopenten 96.3 0.0027 9.4E-08 48.2 3.3 22 11-32 6-27 (323)
455 3ozx_A RNAse L inhibitor; ATP 96.3 0.0022 7.5E-08 52.3 2.9 23 12-34 296-318 (538)
456 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0027 9.4E-08 51.7 3.5 23 12-34 314-336 (538)
457 3qf4_B Uncharacterized ABC tra 96.2 0.0017 6E-08 53.6 2.3 22 12-33 383-404 (598)
458 3bk7_A ABC transporter ATP-bin 96.2 0.0025 8.7E-08 52.7 3.2 23 12-34 384-406 (607)
459 2px0_A Flagellar biosynthesis 96.2 0.0028 9.4E-08 47.7 3.1 86 58-153 182-273 (296)
460 1qhl_A Protein (cell division 96.2 0.00043 1.5E-08 50.0 -1.4 22 13-34 30-51 (227)
461 1sxj_E Activator 1 40 kDa subu 96.2 0.0023 8E-08 49.0 2.7 21 13-33 39-59 (354)
462 2qby_A CDC6 homolog 1, cell di 96.2 0.0028 9.7E-08 48.8 3.1 24 10-33 45-68 (386)
463 3j16_B RLI1P; ribosome recycli 96.2 0.0029 1E-07 52.3 3.2 22 13-34 381-402 (608)
464 1ofh_A ATP-dependent HSL prote 96.2 0.0033 1.1E-07 47.1 3.3 24 10-33 50-73 (310)
465 4a82_A Cystic fibrosis transme 96.2 0.0015 5.2E-08 53.7 1.5 22 12-33 369-390 (578)
466 1vma_A Cell division protein F 96.2 0.0034 1.2E-07 47.4 3.3 86 59-154 187-284 (306)
467 4b4t_M 26S protease regulatory 96.1 0.0038 1.3E-07 49.4 3.6 25 9-33 214-238 (434)
468 4b4t_K 26S protease regulatory 96.1 0.0039 1.3E-07 49.3 3.6 25 9-33 205-229 (428)
469 1sxj_C Activator 1 40 kDa subu 96.1 0.0033 1.1E-07 48.0 3.2 21 13-33 49-69 (340)
470 1pzn_A RAD51, DNA repair and r 96.1 0.0032 1.1E-07 48.5 3.1 23 12-34 133-155 (349)
471 1fnn_A CDC6P, cell division co 96.1 0.0038 1.3E-07 48.3 3.5 22 12-33 46-67 (389)
472 2dr3_A UPF0273 protein PH0284; 96.1 0.0035 1.2E-07 45.3 3.1 21 12-32 25-45 (247)
473 3eie_A Vacuolar protein sortin 96.1 0.0048 1.6E-07 46.8 4.0 25 9-33 50-74 (322)
474 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0039 1.3E-07 47.4 3.4 24 10-33 45-68 (322)
475 3qf4_A ABC transporter, ATP-bi 96.1 0.0021 7E-08 53.0 2.0 22 12-33 371-392 (587)
476 1c9k_A COBU, adenosylcobinamid 96.1 0.004 1.4E-07 43.2 3.0 21 13-33 2-22 (180)
477 4b4t_L 26S protease subunit RP 96.1 0.0044 1.5E-07 49.1 3.6 25 9-33 214-238 (437)
478 3exa_A TRNA delta(2)-isopenten 96.1 0.0041 1.4E-07 47.0 3.3 22 12-33 5-26 (322)
479 3tqf_A HPR(Ser) kinase; transf 96.1 0.0041 1.4E-07 42.8 3.0 24 10-33 16-39 (181)
480 3cr8_A Sulfate adenylyltranfer 96.0 0.0027 9.2E-08 51.9 2.4 25 9-33 368-392 (552)
481 2qgz_A Helicase loader, putati 96.0 0.0046 1.6E-07 46.7 3.5 24 10-33 152-175 (308)
482 3a8t_A Adenylate isopentenyltr 96.0 0.0041 1.4E-07 47.5 3.2 22 11-32 41-62 (339)
483 3qks_A DNA double-strand break 96.0 0.0046 1.6E-07 43.7 3.2 20 13-32 26-45 (203)
484 1sxj_D Activator 1 41 kDa subu 96.0 0.0043 1.5E-07 47.4 3.2 21 13-33 61-81 (353)
485 1p5z_B DCK, deoxycytidine kina 96.0 0.0027 9.3E-08 46.7 2.0 24 9-32 23-46 (263)
486 2r62_A Cell division protease 96.0 0.0019 6.6E-08 47.5 1.2 22 12-33 46-67 (268)
487 3m6a_A ATP-dependent protease 96.0 0.0042 1.4E-07 50.7 3.2 23 11-33 109-131 (543)
488 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0045 1.6E-07 49.9 3.2 23 11-33 65-87 (499)
489 3pxg_A Negative regulator of g 95.9 0.0046 1.6E-07 49.5 3.2 24 10-33 201-224 (468)
490 4b4t_J 26S protease regulatory 95.9 0.0049 1.7E-07 48.2 3.2 25 9-33 181-205 (405)
491 2v1u_A Cell division control p 95.9 0.0042 1.4E-07 47.9 2.9 24 10-33 44-67 (387)
492 3uk6_A RUVB-like 2; hexameric 95.9 0.005 1.7E-07 47.4 3.3 23 11-33 71-93 (368)
493 2ocp_A DGK, deoxyguanosine kin 95.9 0.0061 2.1E-07 44.1 3.6 23 11-33 3-25 (241)
494 2h92_A Cytidylate kinase; ross 95.9 0.0049 1.7E-07 43.8 2.9 22 11-32 4-25 (219)
495 2ce7_A Cell division protein F 95.9 0.0053 1.8E-07 49.2 3.3 24 10-33 49-72 (476)
496 1a7j_A Phosphoribulokinase; tr 95.9 0.0026 8.7E-08 47.7 1.4 23 10-32 5-27 (290)
497 2iw3_A Elongation factor 3A; a 95.8 0.0062 2.1E-07 52.9 3.9 24 12-35 463-486 (986)
498 3pfi_A Holliday junction ATP-d 95.8 0.0055 1.9E-07 46.6 3.3 24 10-33 55-78 (338)
499 3hws_A ATP-dependent CLP prote 95.8 0.0068 2.3E-07 46.7 3.7 25 9-33 50-74 (363)
500 3d8b_A Fidgetin-like protein 1 95.8 0.0063 2.2E-07 46.9 3.5 25 9-33 116-140 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.2e-43 Score=255.05 Aligned_cols=169 Identities=44% Similarity=0.735 Sum_probs=147.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+++||+|+|.+|||||||+++|..+.+...+.++++.++.......++..+.+.+|||+|+++|..+++.+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 46799999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++++++.+..|+..+.....+++|+++|+||+|+.+.++++..++..+++.++++|+++||++|.||+++|+.|
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988878899999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 029103 168 AKRLAEVNP 176 (199)
Q Consensus 168 ~~~~~~~~~ 176 (199)
++.+.....
T Consensus 171 ~~~i~~~~~ 179 (216)
T 4dkx_A 171 AAALPGMES 179 (216)
T ss_dssp HHHC-----
T ss_pred HHHHHhhhc
Confidence 999876543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.8e-37 Score=222.50 Aligned_cols=170 Identities=38% Similarity=0.692 Sum_probs=157.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+|+|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 46789999999999999999999999988877888888888888888889899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999887777888888999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 029103 167 IAKRLAEVNP 176 (199)
Q Consensus 167 l~~~~~~~~~ 176 (199)
|.+.+.+...
T Consensus 165 l~~~i~~~~~ 174 (206)
T 2bcg_Y 165 MARQIKESMS 174 (206)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.6e-36 Score=218.05 Aligned_cols=192 Identities=34% Similarity=0.618 Sum_probs=149.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45789999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCCCCHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~ 161 (199)
|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .......+...++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988776542 578999999999997 34556677777777 678899999999999999
Q ss_pred HHHHHHHHHHHhhCCC------CCCCCccccccCCCCCCCCCCC
Q 029103 162 ELFYEIAKRLAEVNPS------RQTGMKLHTESHGGGRRGFCCS 199 (199)
Q Consensus 162 ~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~cc~ 199 (199)
++|++|.+.+.++... ........+.+...+.+.+|||
T Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 164 QAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred HHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 9999999999776432 1222333332323356667877
No 4
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=9.8e-36 Score=210.60 Aligned_cols=175 Identities=70% Similarity=1.095 Sum_probs=153.7
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~ 80 (199)
|+........++|+++|++|||||||+++|.+..+.....++.+.++......+++..+.+.+||+||++.+...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 67777778899999999999999999999999988877778888888888888888899999999999999999999999
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
..+|++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+.+...+...+...++..++++++++||++|.|+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999999999999998887789999999999999877777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 029103 161 NELFYEIAKRLAEVN 175 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (199)
+++|++|.+.+.+..
T Consensus 163 ~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 163 KEIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998886643
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=215.43 Aligned_cols=166 Identities=31% Similarity=0.556 Sum_probs=147.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|++|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3579999999999999999999999887766666665544 455667888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..++...++..++..++++++++||++|.|++++|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999988765 358999999999999887778888899999999999999999999999999999
Q ss_pred HHHHHHhh
Q 029103 167 IAKRLAEV 174 (199)
Q Consensus 167 l~~~~~~~ 174 (199)
|.+.+.++
T Consensus 171 l~~~i~~~ 178 (206)
T 2bov_A 171 LMREIRAR 178 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999765
No 6
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=216.90 Aligned_cols=170 Identities=42% Similarity=0.687 Sum_probs=146.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 56899999999999999999999998887777788888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...++..++..++++++++||+++.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988767789999999999998877788888899999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 029103 168 AKRLAEVNPS 177 (199)
Q Consensus 168 ~~~~~~~~~~ 177 (199)
.+.+.++...
T Consensus 171 ~~~i~~~~~~ 180 (223)
T 3cpj_B 171 INTIYQKVSK 180 (223)
T ss_dssp HHHHTTCC--
T ss_pred HHHHHHHhhh
Confidence 9999876543
No 7
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=208.23 Aligned_cols=171 Identities=41% Similarity=0.688 Sum_probs=158.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35689999999999999999999999988888888888889888898999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887789999999999999888888888999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 029103 167 IAKRLAEVNPS 177 (199)
Q Consensus 167 l~~~~~~~~~~ 177 (199)
|.+.+.++.+.
T Consensus 173 l~~~i~~~~~~ 183 (196)
T 3tkl_A 173 MAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhcc
Confidence 99999887654
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=9.9e-35 Score=207.50 Aligned_cols=171 Identities=41% Similarity=0.745 Sum_probs=152.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
....+.+||+|+|++|||||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34467999999999999999999999998887777777888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988777889999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 029103 165 YEIAKRLAEVN 175 (199)
Q Consensus 165 ~~l~~~~~~~~ 175 (199)
++|.+.+.++.
T Consensus 176 ~~l~~~i~~~~ 186 (191)
T 2a5j_A 176 INTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997753
No 9
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.7e-34 Score=205.95 Aligned_cols=168 Identities=36% Similarity=0.636 Sum_probs=154.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
.++.++|+|+|.+|||||||+++|.+..+.....++.+.++........+..+.+.+||+||++.+...+..++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 45689999999999999999999999988777778888888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876778999999999999887777888889999999999999999999999999999
Q ss_pred HHHHHHhh
Q 029103 167 IAKRLAEV 174 (199)
Q Consensus 167 l~~~~~~~ 174 (199)
|.+.+.++
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.8e-35 Score=210.44 Aligned_cols=169 Identities=40% Similarity=0.708 Sum_probs=155.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+|+|.+|||||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 35689999999999999999999999988877888888888888888899899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...++..++...+++++++||++|+|++++|++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877778888888999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.++.
T Consensus 183 l~~~i~~~~ 191 (201)
T 2ew1_A 183 LACRLISEA 191 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=7.1e-35 Score=209.99 Aligned_cols=170 Identities=38% Similarity=0.640 Sum_probs=147.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35689999999999999999999999888777777777788788888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVNELFY 165 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~ 165 (199)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...++..++...++ +++++||++|+|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887778899999999999988777888889999999999 999999999999999999
Q ss_pred HHHHHHHhhCC
Q 029103 166 EIAKRLAEVNP 176 (199)
Q Consensus 166 ~l~~~~~~~~~ 176 (199)
+|.+.+.++..
T Consensus 186 ~l~~~i~~~~~ 196 (201)
T 2hup_A 186 RVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcc
Confidence 99999987653
No 12
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.7e-35 Score=209.90 Aligned_cols=169 Identities=37% Similarity=0.696 Sum_probs=125.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
.++.++|+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35789999999999999999999998877766777778778777888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...++..++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876778999999999999877777888889999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.++.
T Consensus 165 l~~~i~~~~ 173 (183)
T 2fu5_C 165 LARDIKAKM 173 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997754
No 13
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1e-34 Score=203.29 Aligned_cols=167 Identities=44% Similarity=0.774 Sum_probs=145.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+++|++|||||||+++|.++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45789999999999999999999999888777788888888878888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887765678999999999999887778888899999999999999999999999999999
Q ss_pred HHHHHHh
Q 029103 167 IAKRLAE 173 (199)
Q Consensus 167 l~~~~~~ 173 (199)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998864
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.9e-34 Score=203.44 Aligned_cols=168 Identities=42% Similarity=0.744 Sum_probs=153.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
...+.++|+|+|.+|||||||+++|.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++..+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34568999999999999999999999988877777888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888778999999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 029103 166 EIAKRLAE 173 (199)
Q Consensus 166 ~l~~~~~~ 173 (199)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988754
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=203.94 Aligned_cols=168 Identities=38% Similarity=0.657 Sum_probs=152.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+|+|++|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 45789999999999999999999998888777788888888888888899899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999998776 468999999999999888888888999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.+..
T Consensus 165 l~~~~~~~~ 173 (181)
T 3tw8_B 165 ITELVLRAK 173 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999997754
No 16
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.3e-34 Score=202.53 Aligned_cols=166 Identities=65% Similarity=1.019 Sum_probs=152.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
+.+.++|+++|++|||||||+++|.++.+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35689999999999999999999999888877778888888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877788999999999999877777788888999999999999999999999999999
Q ss_pred HHHHHH
Q 029103 167 IAKRLA 172 (199)
Q Consensus 167 l~~~~~ 172 (199)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 988664
No 17
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=206.38 Aligned_cols=171 Identities=38% Similarity=0.684 Sum_probs=155.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
+...+.++|+|+|.+|||||||+++|.+..+.....++.+.++......+.+..+.+.+||+||++.+..++..++..+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 33456899999999999999999999998887777788888888888888889999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766789999999999998777778888899999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 029103 165 YEIAKRLAEVN 175 (199)
Q Consensus 165 ~~l~~~~~~~~ 175 (199)
++|.+.+.++.
T Consensus 180 ~~l~~~i~~~~ 190 (193)
T 2oil_A 180 ETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.9e-34 Score=200.22 Aligned_cols=166 Identities=46% Similarity=0.777 Sum_probs=153.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+++|++|||||||+++|.+..+.....++.+.++........+....+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35689999999999999999999999988877888888888888888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.+++.+..|+..+.....+..|+++|+||+|+.+..+....+...++..++++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998887789999999999999887778888899999999999999999999999999999
Q ss_pred HHHHHH
Q 029103 167 IAKRLA 172 (199)
Q Consensus 167 l~~~~~ 172 (199)
|.+.+.
T Consensus 163 i~~~i~ 168 (170)
T 1z0j_A 163 ISRRIP 168 (170)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 988764
No 19
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.3e-34 Score=204.51 Aligned_cols=169 Identities=38% Similarity=0.669 Sum_probs=155.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
.++.++|+|+|++|||||||+++|.+..+.....++.+.+........++..+.+.+||+||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35789999999999999999999999888877778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++...+++++++||++|+|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999988876788999999999999877778888889999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.++.
T Consensus 167 l~~~~~~~~ 175 (186)
T 2bme_A 167 CARKILNKI 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998754
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.7e-34 Score=201.34 Aligned_cols=171 Identities=41% Similarity=0.704 Sum_probs=145.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~ 83 (199)
+..+..++|+++|.+|||||||+++|.++.+. ....++.+.++.......++..+.+.+||+||++.+...+..++..+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34467899999999999999999999998875 45677788888777778888899999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876688999999999999887777888889999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 029103 164 FYEIAKRLAEVN 175 (199)
Q Consensus 164 ~~~l~~~~~~~~ 175 (199)
|++|.+.+.++.
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987643
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.5e-34 Score=202.75 Aligned_cols=170 Identities=31% Similarity=0.477 Sum_probs=150.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+++|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999998888777777777766 66777888899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...++..++..++++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998887654 46899999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 029103 166 EIAKRLAEVNPS 177 (199)
Q Consensus 166 ~l~~~~~~~~~~ 177 (199)
+|.+.+.+....
T Consensus 162 ~l~~~~~~~~~~ 173 (181)
T 3t5g_A 162 RIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHhcCC
Confidence 999999886543
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-34 Score=206.88 Aligned_cols=169 Identities=49% Similarity=0.770 Sum_probs=153.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
..++.++|+|+|.+|||||||+++|.+..+.....++.+.++......+.+..+.+.+||+||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34578999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999888777899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029103 166 EIAKRLAEV 174 (199)
Q Consensus 166 ~l~~~~~~~ 174 (199)
+|.+.+.+.
T Consensus 179 ~l~~~i~~~ 187 (192)
T 2fg5_A 179 GISRQIPPL 187 (192)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999887654
No 23
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-34 Score=201.31 Aligned_cols=164 Identities=54% Similarity=0.889 Sum_probs=150.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
+.++|+++|++|||||||+++|.++.+.....++.+.++......+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 47899999999999999999999988877778888888888888888899999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc---ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK---RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|+|++++.+++.+..|+..+......+.|+++++||+|+.+. .++...+...++..++++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877788999999999999765 56777888899999999999999999999999999
Q ss_pred HHHHHHH
Q 029103 166 EIAKRLA 172 (199)
Q Consensus 166 ~l~~~~~ 172 (199)
+|.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9987653
No 24
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=5.2e-34 Score=201.52 Aligned_cols=171 Identities=27% Similarity=0.499 Sum_probs=151.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
.+....++|+++|.+|||||||+++|.+..+...+.++.+..+. .....++..+.+.+||+||++.+..++..++..+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 34456899999999999999999999998877767777666655 56677888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQR-QGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999999999988744 44578999999999999887788888899999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 029103 164 FYEIAKRLAEVNP 176 (199)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (199)
|++|.+.+.+...
T Consensus 163 ~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 163 FEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987653
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=3.7e-34 Score=200.37 Aligned_cols=166 Identities=40% Similarity=0.728 Sum_probs=145.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
+.++|+++|++|||||||+++|.+..+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 47899999999999999999999988877777888888888888888888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|+|++++.+++.+..|+..+......+.|+++|+||+|+. ...........++..++++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999988877789999999999994 445667888889999999999999999999999999999
Q ss_pred HHHHhhC
Q 029103 169 KRLAEVN 175 (199)
Q Consensus 169 ~~~~~~~ 175 (199)
+.+.++.
T Consensus 161 ~~~~~~~ 167 (170)
T 1g16_A 161 KLIQEKI 167 (170)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9998753
No 26
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-35 Score=210.72 Aligned_cols=169 Identities=35% Similarity=0.633 Sum_probs=156.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
++.+||+|+|.+|||||||+++|.+..+.....++.+.++........+..+.+.+||+||++.+..++..++..+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 57899999999999999999999998887777788888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.......+...++..++++++++||++|.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988877899999999999998888888899999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 029103 168 AKRLAEVNP 176 (199)
Q Consensus 168 ~~~~~~~~~ 176 (199)
.+.+.++.+
T Consensus 181 ~~~i~~~~~ 189 (191)
T 3dz8_A 181 VDAICDKMS 189 (191)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999987653
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=206.64 Aligned_cols=170 Identities=35% Similarity=0.686 Sum_probs=147.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
.+....++|+|+|.+|||||||+++|.++.+.....++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 44467899999999999999999999988877777788888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~ 163 (199)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++...+...++... +++++++||++|+|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999988877778999999999999887777788888888874 889999999999999999
Q ss_pred HHHHHHHHHhh
Q 029103 164 FYEIAKRLAEV 174 (199)
Q Consensus 164 ~~~l~~~~~~~ 174 (199)
|++|.+.+.++
T Consensus 181 ~~~l~~~i~~~ 191 (192)
T 2il1_A 181 FLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 28
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=8e-34 Score=204.55 Aligned_cols=169 Identities=34% Similarity=0.609 Sum_probs=154.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
.++.++|+|+|++|||||||+++|.+..+.....++.+.++.......++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45689999999999999999999999888777788888888888888888899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+.......++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999887778888899999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.++.
T Consensus 165 l~~~i~~~~ 173 (203)
T 1zbd_A 165 LVDVICEKM 173 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 29
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=9.2e-34 Score=200.94 Aligned_cols=167 Identities=32% Similarity=0.519 Sum_probs=150.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
...+.++|+|+|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345689999999999999999999999888777777776666 6677788889999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC-CCCCHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK-SAHNVNEL 163 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v~~~ 163 (199)
+++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+...+...++..++++++++||+ ++.|++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 99999999999999999999888664 35788999999999998888888999999999999999999999 99999999
Q ss_pred HHHHHHHHHh
Q 029103 164 FYEIAKRLAE 173 (199)
Q Consensus 164 ~~~l~~~~~~ 173 (199)
|++|.+.+.+
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998876
No 30
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=206.53 Aligned_cols=168 Identities=39% Similarity=0.686 Sum_probs=144.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
++.++|+|+|.+|||||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 56899999999999999999999988877777777887888888888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888767889999999999998777788888899999999999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+.++.
T Consensus 183 ~~~i~~~~ 190 (200)
T 2o52_A 183 ARTILNKI 190 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.1e-34 Score=201.72 Aligned_cols=166 Identities=43% Similarity=0.741 Sum_probs=151.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|++|||||||+++|.++.+.....++.+.+........++..+.+.+||+||++.+...+..++..+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998888777888888888888888998899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.....+...++...+++++++|++++.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766789999999999998877788888889999999999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 172 ~~~~~~ 177 (179)
T 2y8e_A 172 AAALPG 177 (179)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 887644
No 32
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=208.02 Aligned_cols=169 Identities=33% Similarity=0.447 Sum_probs=143.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+....++|+|+|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 445689999999999999999999999887766666665444 3445677888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGN--PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ......+...++..++++++++||++|.|++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence 9999999999999998888877766432 5789999999999875 456677888888999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 029103 164 FYEIAKRLAEVNP 176 (199)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (199)
|++|.+.+.++..
T Consensus 162 ~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 162 FQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHCSSSCE
T ss_pred HHHHHHHHhhhhc
Confidence 9999998876543
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=5.1e-34 Score=199.28 Aligned_cols=165 Identities=35% Similarity=0.606 Sum_probs=150.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+...+.++.+.++.......++..+.+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999998887777888888888888888888999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.....+...++..++++++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999887764 688999999999998777777888899999999999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998864
No 34
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-34 Score=208.65 Aligned_cols=169 Identities=30% Similarity=0.539 Sum_probs=142.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.++|+++|.+|||||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.|..++..++..+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4689999999999999999999999888766666666554 345567788899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc--------CCHHHHHHHHHHhCC-cEEEeccCCC
Q 029103 88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK--------VKNEEGELYAQENGL-SFLETSAKSA 157 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s~~~~ 157 (199)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+... +...++..++..++. +|+++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 7998887763 5899999999999876443 367778888888886 8999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCC
Q 029103 158 HNVNELFYEIAKRLAEVNPSR 178 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~~~~~~ 178 (199)
+|++++|++|++.+.+....+
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999998765433
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.4e-34 Score=203.60 Aligned_cols=170 Identities=31% Similarity=0.554 Sum_probs=151.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE-EEEEEeCCe---------EEEEEEEeCCCccccccc
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF-TQVLSLNEV---------TIKFDIWDTAGQERYHSL 75 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~v~l~d~~g~~~~~~~ 75 (199)
+..+.++|+|+|++|||||||+++|.++.+.....++.+.++. .......+. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998887777788877776 556666655 789999999999999999
Q ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103 76 APMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
+..++..+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+.......++..++++++++|+
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999887754 78999999999999887777888889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhC
Q 029103 155 KSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+++.|++++|++|.+.+.++.
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999997754
No 36
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.7e-34 Score=202.69 Aligned_cols=169 Identities=34% Similarity=0.520 Sum_probs=148.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCCE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
..+.++|+|+|++|||||||+++|.++.+...+.++.+.+.....+...+ ..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45689999999999999999999998887666667777777777777776 67899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+++|||++++.+++.+..|+..+.... ...+|+++|+||+|+.+.+.+...+...++..++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999989998887642 13444899999999988777888888999999999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 029103 163 LFYEIAKRLAEVN 175 (199)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (199)
+|++|.+.+.+..
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987754
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.1e-33 Score=201.27 Aligned_cols=166 Identities=30% Similarity=0.552 Sum_probs=143.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
..+++|+++|++|||||||+++|.+..+...+.++. .+........++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999999988766555555 3444566667888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ..........++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887754 46899999999999974 456678889999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.+..
T Consensus 160 l~~~~~~~~ 168 (189)
T 4dsu_A 160 LVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998754
No 38
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.8e-33 Score=200.35 Aligned_cols=169 Identities=29% Similarity=0.489 Sum_probs=148.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
.....++|+++|.+|||||||+++|.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 34568999999999999999999999998877777777666553 56678889999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCcc--cccCCHHHHHHHHHHhCCc-EEEeccCCCCCHH
Q 029103 86 AVVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEE--KRKVKNEEGELYAQENGLS-FLETSAKSAHNVN 161 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 161 (199)
+++|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+ ...+...+...++..+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 6788888765 56899999999999975 3667788899999999998 9999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 029103 162 ELFYEIAKRLAEVNP 176 (199)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (199)
++|++|.+.+.++.+
T Consensus 177 ~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 177 EVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999987654
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=206.73 Aligned_cols=170 Identities=32% Similarity=0.552 Sum_probs=139.0
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~ 83 (199)
..+....++|+|+|.+|||||||+++|.++.+.....++.+.++......+++..+.+.+||+||++.+...+..++..+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 34445689999999999999999999999888777777788888888888899999999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc------ccccCCHHHHHHHHHHhCCcEEEeccCCC
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE------EKRKVKNEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ....+...++..++...+++++++||++|
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 999999999999999999999999888766789999999999996 34566778888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 029103 158 HNVNELFYEIAKRLAE 173 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~ 173 (199)
.|++++|++|.+.+.+
T Consensus 182 ~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 182 SNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 40
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.2e-33 Score=201.48 Aligned_cols=166 Identities=36% Similarity=0.638 Sum_probs=147.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc-ccccccccCCCEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH-SLAPMYYRGAAAA 86 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~-~~~~~~~~~~d~~ 86 (199)
...++|+|+|.+|||||||+++|.++.+.....++.+.++....+..++..+.+.+||+||++.+. .++..++..+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 467999999999999999999999988887778888888888888888888999999999999988 8888999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCC---CCHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSA---HNVNE 162 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~~ 162 (199)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++...+...++..++++++++|++++ +|+.+
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999999988765 578999999999999887778888899999999999999999999 99999
Q ss_pred HHHHHHHHHHh
Q 029103 163 LFYEIAKRLAE 173 (199)
Q Consensus 163 ~~~~l~~~~~~ 173 (199)
+|++|.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (189)
T 1z06_A 178 IFMTLAHKLKS 188 (189)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 41
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=204.94 Aligned_cols=168 Identities=30% Similarity=0.488 Sum_probs=144.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4589999999999999999999999988776667666555 555666677889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887653 357899999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHhhCC
Q 029103 167 IAKRLAEVNP 176 (199)
Q Consensus 167 l~~~~~~~~~ 176 (199)
|.+.+.+...
T Consensus 181 l~~~i~~~~~ 190 (201)
T 3oes_A 181 VIQEIARVEN 190 (201)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHhhhh
Confidence 9999988553
No 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.9e-33 Score=197.20 Aligned_cols=168 Identities=33% Similarity=0.604 Sum_probs=146.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
+....++|+++|++|||||||+++|.++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34678999999999999999999999988887778888888888888888988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcccccCCHHHHHHHHH-HhCCcEEEeccCCCCCH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-ENGLSFLETSAKSAHNV 160 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v 160 (199)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .......+...++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876543 688999999999997 45566777888877 66789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029103 161 NELFYEIAKRLAEV 174 (199)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (199)
+++|++|.+.+.++
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 43
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-33 Score=202.90 Aligned_cols=167 Identities=39% Similarity=0.724 Sum_probs=150.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998887777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++|+||+|+ ............++..++++++++||+++.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999988876678999999999999 445566778888889999999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+.++.
T Consensus 177 ~~~~~~~~ 184 (213)
T 3cph_A 177 AKLIQEKI 184 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987763
No 44
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=197.95 Aligned_cols=168 Identities=33% Similarity=0.414 Sum_probs=136.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--ccccccccccCCCE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLAPMYYRGAAA 85 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--~~~~~~~~~~~~d~ 85 (199)
.+.++|+++|++|||||||+++|.+..+... .++.+.+.....+.+++..+.+.+||+||++. +..+...++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 3579999999999999999999998766543 34566677777788888889999999999987 55666778899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887753 4689999999999998877788888888898999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 029103 165 YEIAKRLAEVNP 176 (199)
Q Consensus 165 ~~l~~~~~~~~~ 176 (199)
++|.+.+.++..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999999977543
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.1e-33 Score=196.55 Aligned_cols=165 Identities=25% Similarity=0.304 Sum_probs=134.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCCCEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAAAAVV 88 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-~~~~~~~~~d~~i~ 88 (199)
.+||+++|++|||||||+++|.+.........+.+.+........++..+.+.+||++|++.+.. ++..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999997766655556666777777888899999999999999998876 67778899999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999877653 589999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 029103 168 AKRLAEV 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998764
No 46
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.4e-33 Score=205.08 Aligned_cols=169 Identities=25% Similarity=0.447 Sum_probs=145.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....+||+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..++..+|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34689999999999999999999999988877777777665 44566777889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEe
Q 029103 87 VVVYDITSMDSFER-AKKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 152 (199)
|+|||++++.+++. +..|+..+... .++.|+++|+||+|+.+. +.+...++..++..+++ +|+++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999998 68999998877 468999999999999763 56888899999999999 99999
Q ss_pred ccCCCCC-HHHHHHHHHHHHHhhCCC
Q 029103 153 SAKSAHN-VNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 153 s~~~~~~-v~~~~~~l~~~~~~~~~~ 177 (199)
||++|.| ++++|++|.+.+.++...
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC----
T ss_pred ccCCCcccHHHHHHHHHHHHhccCcC
Confidence 9999998 999999999999876543
No 47
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=203.46 Aligned_cols=170 Identities=25% Similarity=0.299 Sum_probs=144.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-cccccccCCC
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS-LAPMYYRGAA 84 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~-~~~~~~~~~d 84 (199)
+....++|+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..++..+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345689999999999999999999976444333344555666667777888999999999999987764 6777889999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...++..++..++++++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998877643 58999999999999877778888889999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 029103 164 FYEIAKRLAEVN 175 (199)
Q Consensus 164 ~~~l~~~~~~~~ 175 (199)
|++|++.+.++.
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999987644
No 48
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=200.65 Aligned_cols=165 Identities=24% Similarity=0.426 Sum_probs=142.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....+||+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||++|++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 35689999999999999999999999888777777776655 445667888999999999999988775 6789999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc-CCCCCHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG---NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA-KSAHNVNE 162 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v~~ 162 (199)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...++..++..++++++++|| ++|.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 99999999999999999999887653 268899999999999887788889999999999999999999 89999999
Q ss_pred HHHHHHHHHHh
Q 029103 163 LFYEIAKRLAE 173 (199)
Q Consensus 163 ~~~~l~~~~~~ 173 (199)
+|++|++.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-33 Score=198.27 Aligned_cols=167 Identities=37% Similarity=0.687 Sum_probs=151.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|++|||||||+++|.+..+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46899999999999999999999999888778888888888888888999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ..+...+...++..++++++++||+++.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999887654 36799999999999954 456678888899999999999999999999999999
Q ss_pred HHHHHHhhC
Q 029103 167 IAKRLAEVN 175 (199)
Q Consensus 167 l~~~~~~~~ 175 (199)
|.+.+.+..
T Consensus 172 l~~~~~~~~ 180 (195)
T 1x3s_A 172 LVEKIIQTP 180 (195)
T ss_dssp HHHHHHTSG
T ss_pred HHHHHHhhh
Confidence 999998643
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=8.7e-33 Score=198.86 Aligned_cols=165 Identities=48% Similarity=0.815 Sum_probs=145.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeE-----------------------------
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVT----------------------------- 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 58 (199)
.+.++|+|+|++|||||||+++|++..+.....++.+.++....+...+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 468999999999999999999999998887777888877777777776654
Q ss_pred --------EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 59 --------IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 59 --------~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
..+.+||+||++.+...+..++..+|++++|||++++.+++.+..|+..+..... .|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-ccc
Confidence 8899999999999999999999999999999999999999999999999887643 89999999999 555
Q ss_pred ccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 131 RKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
......+...++..++++++++||+++.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 667788889999999999999999999999999999999988754
No 51
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.7e-33 Score=196.45 Aligned_cols=163 Identities=18% Similarity=0.338 Sum_probs=142.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
....++||+|+|.+|||||||++++.++.+...+.++. ..+...+.+++..+.+.+||++|++.+. ++..+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 34579999999999999999999999988876665552 3344777888999999999999998776 7788999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCc--ccccCCHHHHHHHHHHhC-CcEEEeccCCCCCHH
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLE--EKRKVKNEEGELYAQENG-LSFLETSAKSAHNVN 161 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~ 161 (199)
+++|||++++.+++.+..|+..+..... .+.|+++++||+|+. +...+...++..++..++ ++|+++||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999987653 688999999999994 466778888999999987 899999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 029103 162 ELFYEIAKRLAEVN 175 (199)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (199)
++|++|.+.+.++.
T Consensus 169 ~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 169 RVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 52
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.5e-33 Score=197.45 Aligned_cols=168 Identities=38% Similarity=0.647 Sum_probs=133.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
....++|+++|++|||||||+++|.+..+...+.++.+.+.....+..+ +....+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4568999999999999999999999988877777777777777777776 556889999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCcc-cccCCHHHHHHHHH-HhCCcEEEeccCCCCC
Q 029103 86 AVVVYDITSMDSFERAKKWVQELQRQGN----PNLIMFLVANKVDLEE-KRKVKNEEGELYAQ-ENGLSFLETSAKSAHN 159 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~ 159 (199)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ...+...+...++. ..+++++++|+++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876543 6889999999999954 44566777888887 5678999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029103 160 VNELFYEIAKRLAEV 174 (199)
Q Consensus 160 v~~~~~~l~~~~~~~ 174 (199)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
No 53
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=6.3e-34 Score=207.13 Aligned_cols=169 Identities=30% Similarity=0.558 Sum_probs=148.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe----------EEEEEEEeCCCcccccccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV----------TIKFDIWDTAGQERYHSLA 76 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~l~d~~g~~~~~~~~ 76 (199)
.++.++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 356899999999999999999999988877666677777766666666665 7889999999999999999
Q ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103 77 PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (199)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (199)
..++..+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+...+...++..++++++++||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999999999887765543 689999999999998877788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhC
Q 029103 156 SAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 156 ~~~~v~~~~~~l~~~~~~~~ 175 (199)
+++|++++|++|.+.+.++.
T Consensus 182 ~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp TTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987754
No 54
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=8.5e-33 Score=198.85 Aligned_cols=169 Identities=29% Similarity=0.463 Sum_probs=138.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCE
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAA 85 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~ 85 (199)
.....++|+++|.+|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345789999999999999999999998877666666665443 4556678888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEE
Q 029103 86 AVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLE 151 (199)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 151 (199)
+++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+. ..+...+...++..++. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 7988887763 58999999999999752 45677888889988887 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhCC
Q 029103 152 TSAKSAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~~~~ 176 (199)
+||++|.|++++|++|.+.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999987543
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=6.7e-33 Score=193.38 Aligned_cols=163 Identities=28% Similarity=0.349 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.+||+++|++|||||||+++|.+.... ...+..+.++ ......++..+.+.+||++|++.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999865543 2334444444 45567788999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999887753 47899999999999988888889999999999999999999999999999999999
Q ss_pred HHHHhh
Q 029103 169 KRLAEV 174 (199)
Q Consensus 169 ~~~~~~ 174 (199)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
No 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.7e-33 Score=193.07 Aligned_cols=164 Identities=32% Similarity=0.569 Sum_probs=142.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|++|||||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 479999999999999999999999887666666655444 3445678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+..+....+...++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877643 589999999999998877788888999999999999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=7.4e-33 Score=193.16 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=143.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887766666666544 3455677788999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.....+...++..+ +.+++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988877653 468999999999999887777888888888887 789999999999999999999
Q ss_pred HHHHHH
Q 029103 167 IAKRLA 172 (199)
Q Consensus 167 l~~~~~ 172 (199)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=5.9e-33 Score=193.47 Aligned_cols=164 Identities=34% Similarity=0.565 Sum_probs=145.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|++|||||||+++|.++.+...+.++.+.. ......+++....+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988776666655533 35667778888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..+....+...++..++++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999998887654 3689999999999998877888888899999999999999999999999999999
Q ss_pred HHHHHh
Q 029103 168 AKRLAE 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998764
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.8e-33 Score=198.74 Aligned_cols=167 Identities=34% Similarity=0.515 Sum_probs=145.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+|+|.+|||||||+++|.++.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35689999999999999999999999888776666666544 45566788889999999999987 67778889999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH-NVNELF 164 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~ 164 (199)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...+...++..++++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887754 4689999999999998877788888999999999999999999999 999999
Q ss_pred HHHHHHHHhhC
Q 029103 165 YEIAKRLAEVN 175 (199)
Q Consensus 165 ~~l~~~~~~~~ 175 (199)
++|.+.+.++.
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998754
No 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-32 Score=194.62 Aligned_cols=165 Identities=25% Similarity=0.481 Sum_probs=143.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34689999999999999999999999887766666665554 44556677789999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEe
Q 029103 87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 152 (199)
++|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+. +.+...++..++..+++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 788888876 358899999999999753 35677888899999897 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q 029103 153 SAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~~~ 173 (199)
||++|+|++++|++|.+.+..
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.4e-32 Score=193.86 Aligned_cols=166 Identities=27% Similarity=0.492 Sum_probs=143.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4689999999999999999999999887766666665444 455667888999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q 029103 88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (199)
+|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+. ..+...+...++..++. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 7888887763 48899999999998653 45677788888888887 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
|++|.|++++|++|.+.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999987644
No 62
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.6e-32 Score=194.75 Aligned_cols=167 Identities=31% Similarity=0.551 Sum_probs=146.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+|+|++|||||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34689999999999999999999999887666666655444 44556788888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.......+...++..++++++++|++++.|++++|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 999999999999999999988877643 5899999999999988777888889999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029103 166 EIAKRLAEV 174 (199)
Q Consensus 166 ~l~~~~~~~ 174 (199)
+|.+.+.++
T Consensus 174 ~l~~~i~~~ 182 (187)
T 2a9k_A 174 DLMREIRAR 182 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-32 Score=198.01 Aligned_cols=168 Identities=28% Similarity=0.343 Sum_probs=139.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccCC
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGA 83 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~-~~~~~~~~~~~~ 83 (199)
..+.+||+|+|.+|||||||+++|.+... ... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34679999999999999999999986432 232 33456666677778889899999999999876 455667788999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...++..++..++++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988876542 35799999999999987777888888888889999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 029103 163 LFYEIAKRLAEVN 175 (199)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (199)
+|++|.+.+..+.
T Consensus 193 lf~~l~~~i~~~~ 205 (211)
T 2g3y_A 193 LFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.2e-32 Score=194.26 Aligned_cols=165 Identities=29% Similarity=0.525 Sum_probs=141.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.|...+..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45689999999999999999999999888766666666555 34556778889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q 029103 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (199)
++|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. +.+...++..++..++ ++|+++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 6888888776 468999999999999742 4567788888998887 789999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHh
Q 029103 153 SAK-SAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 153 s~~-~~~~v~~~~~~l~~~~~~ 173 (199)
||+ ++.|++++|++|.+.+.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999998865
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1e-31 Score=191.54 Aligned_cols=168 Identities=29% Similarity=0.524 Sum_probs=134.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
+...++|+++|.+|||||||+++|.++.+.....++.+..+ ......++..+.+.+||+||++.+...+..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 45689999999999999999999998877665555554333 45566788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGN-PNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ......+...++..++++++++|++++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988876543 5789999999999876 45667888899999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 029103 166 EIAKRLAEVNP 176 (199)
Q Consensus 166 ~l~~~~~~~~~ 176 (199)
+|.+.+.+...
T Consensus 176 ~l~~~~~~~~~ 186 (190)
T 3con_A 176 TLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.8e-32 Score=191.24 Aligned_cols=161 Identities=24% Similarity=0.364 Sum_probs=135.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.+||+++|.+|||||||+++|.++.+.. +.++.+..+ ...+.+++..+.+.+||++|++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 468999999999999999999999988776 566665443 56667788889999999999876 46788999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCc--ccccCCHHHHHHHHHHh-CCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQ---GNPNLIMFLVANKVDLE--EKRKVKNEEGELYAQEN-GLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~ 161 (199)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+. ..+.+...++..++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999998876665543 23689999999999994 45667788888888876 6899999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 029103 162 ELFYEIAKRLAEVN 175 (199)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (199)
++|++|.+.+.+..
T Consensus 158 ~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 158 RVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.2e-33 Score=202.90 Aligned_cols=173 Identities=29% Similarity=0.496 Sum_probs=148.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-eEEEEEEEeCCCcccccccccccccCCC
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-VTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
.....+||+|+|.+|||||||+++|+++.+...+.++.+............ ..+.+.+||+||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345689999999999999999999998887776677777777666665543 4488999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+.......++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999988767779999999999998877888888889999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 029103 165 YEIAKRLAEVNPSR 178 (199)
Q Consensus 165 ~~l~~~~~~~~~~~ 178 (199)
++|.+.+.+.....
T Consensus 167 ~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 167 LHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHHCCTTCC
T ss_pred HHHHHHHhcccccc
Confidence 99999998865443
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.8e-33 Score=202.14 Aligned_cols=168 Identities=27% Similarity=0.484 Sum_probs=112.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEeCCe--EEEEEEEeCCCcccccccccccccCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSLNEV--TIKFDIWDTAGQERYHSLAPMYYRGA 83 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~l~d~~g~~~~~~~~~~~~~~~ 83 (199)
...++|+|+|++|||||||+++|.+. .+...+.++.+.+.....+.+++. .+.+.+||+||++.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35799999999999999999999988 666666677766677777777776 88999999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcc-cccCCHHHHHHHHHHhCCcEEEeccCC-CC
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEE-KRKVKNEEGELYAQENGLSFLETSAKS-AH 158 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 158 (199)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ...+...++..++..++++++++|+++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 6899999999999987 677888889999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhhC
Q 029103 159 NVNELFYEIAKRLAEVN 175 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~~ 175 (199)
|++++|++|.+.+.+..
T Consensus 178 gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNY 194 (208)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-32 Score=196.08 Aligned_cols=165 Identities=29% Similarity=0.525 Sum_probs=141.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.+||+|+|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.|..++..++..+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 35689999999999999999999999888776667666555 34556677889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhC-CcEEEe
Q 029103 87 VVVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENG-LSFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 152 (199)
|+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. +.+...++..+++.++ ++|+++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 6898888776 468999999999999742 4567788889998887 689999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHh
Q 029103 153 SAK-SAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 153 s~~-~~~~v~~~~~~l~~~~~~ 173 (199)
||+ +++|++++|+.|.+.+.+
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998875
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=197.30 Aligned_cols=166 Identities=32% Similarity=0.545 Sum_probs=123.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|.+|||||||+++|.++.+...+.++....+ .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4689999999999999999999998877665556554333 455667888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhCC-cEEEec
Q 029103 88 VVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLETS 153 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 153 (199)
+|||++++.+++.+. .|+..+... ..+.|+++|+||+|+.+.. .+...++..++...++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 788888776 4678999999999997542 5667788889989897 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
|++|.|++++|++|.+.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998743
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-32 Score=191.22 Aligned_cols=164 Identities=33% Similarity=0.464 Sum_probs=141.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|++|||||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 368999999999999999999998887766666665444 3445667888899999999999999889999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..++...+...++..++++++++|+++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888888877653 257899999999999887778888888899999999999999999999999999
Q ss_pred HHHHHHh
Q 029103 167 IAKRLAE 173 (199)
Q Consensus 167 l~~~~~~ 173 (199)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9886643
No 72
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=208.55 Aligned_cols=167 Identities=42% Similarity=0.715 Sum_probs=141.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.++|+|+|.+|||||||+++|.+..+.....++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 56899999999999999999999988777767777888888888888999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+...+...++..++++++++||++|.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998777776677788889999999999999999999999999
Q ss_pred HHHHHhh
Q 029103 168 AKRLAEV 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
.+.+.++
T Consensus 191 ~~~l~~~ 197 (199)
T 3l0i_B 191 AAEIKKR 197 (199)
T ss_dssp TTTTTTT
T ss_pred HHHHHHh
Confidence 8877653
No 73
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.5e-31 Score=191.40 Aligned_cols=164 Identities=34% Similarity=0.557 Sum_probs=142.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...+||+++|.+|||||||+++|.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 468999999999999999999999988877666666665543 3567888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q 029103 88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (199)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (199)
+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. +.+...++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999988 6788887765 358899999999999754 45667788888888888 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 029103 154 AKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~ 173 (199)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=6.2e-32 Score=195.00 Aligned_cols=167 Identities=26% Similarity=0.484 Sum_probs=137.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC
Q 029103 3 RTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG 82 (199)
Q Consensus 3 ~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~ 82 (199)
+.......++|+++|.+|||||||+++|.++.+...+.++.+ +........++..+.+.+||+||++.+...+..++..
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 101 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhcc
Confidence 334446689999999999999999999999888766666554 4445566677888999999999999999999999999
Q ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc------------CCHHHHHHHHHHhCC-c
Q 029103 83 AAAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK------------VKNEEGELYAQENGL-S 148 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~ 148 (199)
+|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... +...++..++...+. +
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 99999999999999999986 7888887774 7899999999999875432 667788888888886 5
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 029103 149 FLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
++++||++|+|++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3e-31 Score=184.51 Aligned_cols=162 Identities=30% Similarity=0.566 Sum_probs=140.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v 89 (199)
.++|+++|++|||||||+++|.++.+.....++.+.. .......++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 6899999999999999999999987766555555433 345566788889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 029103 90 YDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.+ ..........++..++++++++|++++.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887754 35799999999999876 45667888889999999999999999999999999999
Q ss_pred HHHHh
Q 029103 169 KRLAE 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98754
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-31 Score=191.35 Aligned_cols=165 Identities=32% Similarity=0.551 Sum_probs=137.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|.+|||||||+++|.++.+...+.++.+..+.. ....++..+.+.+||+||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 357899999999999999999999988776666666555543 3567888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEec
Q 029103 88 VVYDITSMDSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETS 153 (199)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 153 (199)
+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. +.+...++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999888 6788888775 368899999999999754 34667778888888887 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q 029103 154 AKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~ 174 (199)
|++|.|++++|++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.9e-32 Score=199.90 Aligned_cols=169 Identities=33% Similarity=0.576 Sum_probs=149.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
......+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+||+||++.+..++..++..+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34457899999999999999999997777777777888888999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.+.... .+...++...+++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 166 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPF 166 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999999877 358899999999999764332 25566778889999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 029103 165 YEIAKRLAEVNP 176 (199)
Q Consensus 165 ~~l~~~~~~~~~ 176 (199)
++|.+.+.....
T Consensus 167 ~~l~~~l~~~~~ 178 (221)
T 3gj0_A 167 LWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHTCTT
T ss_pred HHHHHHHHhCcc
Confidence 999999987643
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.8e-32 Score=196.29 Aligned_cols=168 Identities=20% Similarity=0.257 Sum_probs=136.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC-----------cCccceeEEEEEE-EeCCeEEEEEEEeCCCccc
Q 029103 4 TSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ-----------ESTIGAAFFTQVL-SLNEVTIKFDIWDTAGQER 71 (199)
Q Consensus 4 ~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~v~l~d~~g~~~ 71 (199)
.......+||+|+|++|||||||++.+.+. +...+ .++.+.++..... ..++..+.+.+||+||++.
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 344567999999999999999999877653 33332 2233333333333 5567788999999999999
Q ss_pred ccccccccccCCCEEEEEEECC------CHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh
Q 029103 72 YHSLAPMYYRGAAAAVVVYDIT------SMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN 145 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 145 (199)
+...+..+++++|++|+|||++ +.++++.+..|+..+. ....+.|+++|+||+|+.+. ....++..++..+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE 163 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence 9999999999999999999999 5567777777877773 33578999999999999764 6778888899999
Q ss_pred CC-cEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 146 GL-SFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 146 ~~-~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
++ +++++||++|+|++++|++|.+.+.++.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 99 9999999999999999999999998754
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.1e-30 Score=186.88 Aligned_cols=167 Identities=28% Similarity=0.362 Sum_probs=137.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc-ccccccccccCCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER-YHSLAPMYYRGAA 84 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~-~~~~~~~~~~~~d 84 (199)
.+.+||+|+|.+|||||||+++|.+.. +... .++.+.+.....+.+++..+.+.+||++|.+. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 2232 23455666667778889899999999999865 4556677888999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+...++..++..++++|+++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 457899999999999876777777888888888999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 029103 164 FYEIAKRLAEVN 175 (199)
Q Consensus 164 ~~~l~~~~~~~~ 175 (199)
|++|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999986544
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2.7e-32 Score=193.02 Aligned_cols=164 Identities=30% Similarity=0.545 Sum_probs=126.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
..+.++|+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 346899999999999999999999988876655555443322 2233456677888999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccccc----------CCHHHHHHHHHHhCC-cEEEecc
Q 029103 87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKRK----------VKNEEGELYAQENGL-SFLETSA 154 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~ 154 (199)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+... +...++..++..++. +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999987 7888887763 5899999999999876443 367778888888896 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~~~ 172 (199)
++|.|++++|++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 81
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.98 E-value=3.9e-30 Score=184.83 Aligned_cols=168 Identities=41% Similarity=0.717 Sum_probs=148.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
.+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999998877777777778888888888999999999999999999989999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEI 167 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l 167 (199)
+|+|+++..+++.+..|+..+......+.|+++++||+|+.+.......++..++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888889888876655688999999999998877777888899999999999999999999999999999
Q ss_pred HHHHHhhC
Q 029103 168 AKRLAEVN 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+.+..
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=9.2e-32 Score=192.96 Aligned_cols=167 Identities=16% Similarity=0.257 Sum_probs=129.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCC
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGA 83 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~ 83 (199)
++.....+|+|+|.+|||||||+++|.++.+.. .+.++.+..... + ....+.+.+||+||++.+..++..++..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 344579999999999999999999999888776 566666643332 2 34457899999999999999999999999
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCcccccCCHH---HHH-HHHHHhCCcEEE
Q 029103 84 AAAVVVYDITSMDSFERAKKWVQELQRQGN--------PNLIMFLVANKVDLEEKRKVKNE---EGE-LYAQENGLSFLE 151 (199)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~---~~~-~~~~~~~~~~~~ 151 (199)
|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+....... ... .++...++++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 999999999999999999888888765411 38899999999999765321111 111 111346788999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhC
Q 029103 152 TSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+||++|.|++++|++|.+.+.++.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998865
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=9.6e-31 Score=183.18 Aligned_cols=160 Identities=22% Similarity=0.361 Sum_probs=126.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+.. ..++.+.. ...+... ...+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 347999999999999999999999887654 34444433 3334444 567899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHH-HH----HHHHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEG-EL----YAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~-~~----~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... ..+. .. .+...+++++++||++|+|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999998888887776543 36899999999999976432 1121 11 122345689999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
++|++|.+.+.++
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988763
No 84
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=3.1e-29 Score=179.06 Aligned_cols=165 Identities=41% Similarity=0.725 Sum_probs=149.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
.++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 35679999999999999999999999888777888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYE 166 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|+|+++..+++.+..|+..+......+.|+++++||+|+.+........+..++...++.++++|++++.+++++|+.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999988888988877665568899999999999877777788899999999999999999999999999999
Q ss_pred HHHHH
Q 029103 167 IAKRL 171 (199)
Q Consensus 167 l~~~~ 171 (199)
|.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=2.1e-31 Score=189.76 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=128.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|.+|||||||+++|.++.+...+.++.+..+.. + ....+.+.+||+||++.+...+..++..+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 468999999999999999999999988876667777665543 2 233578899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999988888876542 3689999999999997532 222221111 1234579999999999999
Q ss_pred HHHHHHHHHHHh
Q 029103 162 ELFYEIAKRLAE 173 (199)
Q Consensus 162 ~~~~~l~~~~~~ 173 (199)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.1e-31 Score=184.55 Aligned_cols=156 Identities=19% Similarity=0.340 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEE
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (199)
+||+++|++|||||||+++|.++.+.. ..++.+.. ...+ ....+.+.+||+||++.+...+..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 34444422 2223 234578999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHH-H----HHHhCCcEEEeccCCCCCHHHHH
Q 029103 91 DITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ...+... + ....+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999988888887653 24689999999999996532 2222211 1 11234579999999999999999
Q ss_pred HHHHHHHHh
Q 029103 165 YEIAKRLAE 173 (199)
Q Consensus 165 ~~l~~~~~~ 173 (199)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988754
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=180.77 Aligned_cols=160 Identities=21% Similarity=0.302 Sum_probs=126.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCC-CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ-FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
...++|+|+|.+|||||||+++|.+.. +.....++.+ .....+..+ ...+.+||+||++.+...+..++..+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 468999999999999999999999876 3444455554 333444444 36889999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCC
Q 029103 87 VVVYDITSMDSFERAKKWVQELQRQGN---PNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAH 158 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 158 (199)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+. ....+...... ..+++++++||++|.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999889888876543 58999999999999753 23344444432 235789999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 029103 159 NVNELFYEIAKRLAE 173 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~ 173 (199)
|++++|++|.+.+.+
T Consensus 173 gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 173 GLQEGVDWLQDQIQT 187 (190)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.4e-29 Score=179.83 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=127.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++. ...+.++.+.. ...+..+ ...+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 468999999999999999999999877 54455555533 3333343 468899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..+..... ...+++++++||++|+|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888876542 46899999999999976432 22222221 1245689999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=5.9e-30 Score=183.84 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=119.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+.. +.++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 346899999999999999999999876543 44444443 23444554 78899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH-----------------hCCcE
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-----------------NGLSF 149 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 149 (199)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .....+...+... .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999988876542 46899999999999975 4455555555442 34579
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 029103 150 LETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~l~~~ 170 (199)
+++||++|+|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.7e-29 Score=180.30 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=124.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+.. +.++.+.. ...+..++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 346899999999999999999999887653 44444443 34455555 78899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHHH------------hCCcEEEecc
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQE------------NGLSFLETSA 154 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~ 154 (199)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .....+....... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999988876542 36899999999999976 3444454444322 3567999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 029103 155 KSAHNVNELFYEIAKR 170 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (199)
++|+|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999764
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.5e-30 Score=182.69 Aligned_cols=161 Identities=20% Similarity=0.295 Sum_probs=123.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|.+|||||||+++|.++.+. .+.++.+... ..+..+ ...+.+||+||++.+...+..++.++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999987765 3445544333 233334 378899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|+|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988887643 3689999999999997532 233333322 2345689999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 029103 162 ELFYEIAKRLAEVN 175 (199)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (199)
++|++|.+.+....
T Consensus 167 ~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 167 QGLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886654
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.1e-30 Score=186.76 Aligned_cols=159 Identities=18% Similarity=0.334 Sum_probs=118.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|++|||||||+++|.++.+.. ..++.+ .....+.. ..+.+.+||+||++.+...+..++..+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 458999999999999999999998776543 333333 22333333 3478899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH-H----HHHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-Y----AQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+... ..+... + ....+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988888876532 46899999999999965422 122111 1 11234579999999999999
Q ss_pred HHHHHHHHHHHh
Q 029103 162 ELFYEIAKRLAE 173 (199)
Q Consensus 162 ~~~~~l~~~~~~ 173 (199)
++|++|.+.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=6.8e-30 Score=180.90 Aligned_cols=156 Identities=20% Similarity=0.295 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|.+|||||||+++|.++.+ ....++.+.... .+..++ ..+.+||+||++.+...+..++..+|+++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4689999999999999999999998876 334455554432 333343 78899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888876542 4689999999999996532 233332222 2245689999999999999
Q ss_pred HHHHHHHHH
Q 029103 162 ELFYEIAKR 170 (199)
Q Consensus 162 ~~~~~l~~~ 170 (199)
++|++|.+.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998764
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.1e-28 Score=189.95 Aligned_cols=163 Identities=26% Similarity=0.482 Sum_probs=141.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 468999999999999999999999888766666664443 4556678888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc------------ccCCHHHHHHHHHHhCC-cEEEecc
Q 029103 89 VYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK------------RKVKNEEGELYAQENGL-SFLETSA 154 (199)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 154 (199)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+. ..+...++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999886 7888887764 48999999999998653 46777888899999997 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 029103 155 KSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 155 ~~~~~v~~~~~~l~~~~~~ 173 (199)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999998865
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.4e-30 Score=184.33 Aligned_cols=160 Identities=24% Similarity=0.373 Sum_probs=125.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+.. ..++.+... ...... ...+.+||+||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 468999999999999999999998766543 344444332 333333 468899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHH-----HHHHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGEL-----YAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|++++++++....|+..+.... ..+.|+++|+||+|+.+... ..+... .....+++++++||++++|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999998888887776543 46899999999999976432 122111 112235679999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=8.5e-30 Score=182.65 Aligned_cols=161 Identities=23% Similarity=0.322 Sum_probs=122.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE--EEEEEe-CCeEEEEEEEeCCCcccccccc---ccc
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF--TQVLSL-NEVTIKFDIWDTAGQERYHSLA---PMY 79 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~v~l~d~~g~~~~~~~~---~~~ 79 (199)
+..+.+||+++|.+|||||||++++.+. +... ++.+.+.. .....+ .+..+.+.+||++|++.|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4457999999999999999999988753 3332 22332222 222223 2566789999999999987776 789
Q ss_pred ccCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc-------cccCCHHHHHHHHH----HhC
Q 029103 80 YRGAAAAVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE-------KRKVKNEEGELYAQ----ENG 146 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~ 146 (199)
++.+|++|+|||++++ ++++.+..|+..+... ..+.|+++|+||+|+.+ .+.+.......++. .++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999987 6777777777776543 56899999999999754 33444555677777 678
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHH
Q 029103 147 LSFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
++|+++||++ .|++++|+.|++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998865
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=3.5e-30 Score=182.47 Aligned_cols=159 Identities=20% Similarity=0.286 Sum_probs=122.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.+..+ ..+.++.+.. ...+..+ .+.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5689999999999999999999987643 2234445433 2333344 467899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||++++++++.+..|+..+... ...+.|+++++||+|+.+... ..+..... ...+++++++||++|+|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999988888776543 246789999999999976432 22221111 1234679999999999999
Q ss_pred HHHHHHHHHHHh
Q 029103 162 ELFYEIAKRLAE 173 (199)
Q Consensus 162 ~~~~~l~~~~~~ 173 (199)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987755
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=4.5e-32 Score=195.61 Aligned_cols=163 Identities=28% Similarity=0.520 Sum_probs=134.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~ 86 (199)
....++|+++|.+|||||||+++|.++.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35689999999999999999999998777655555543333 34445566778899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCcccc------------cCCHHHHHHHHHHhCC-cEEEe
Q 029103 87 VVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEKR------------KVKNEEGELYAQENGL-SFLET 152 (199)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 152 (199)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.. .+...+...++...++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999998886 7887776553 488999999999997543 4455666777777887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 029103 153 SAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~ 171 (199)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.7e-30 Score=182.79 Aligned_cols=164 Identities=20% Similarity=0.411 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC--CCCCCCcCccceeEEEEEEEe---CCeEEEEEEEeCCCcccccccccccccCCC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQESTIGAAFFTQVLSL---NEVTIKFDIWDTAGQERYHSLAPMYYRGAA 84 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d 84 (199)
++||+|+|++|||||||+++|.+. .+...+.++.+.++....... ++..+.+.+||++|++.|..+++.++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999974 344445566666665554433 235678999999999999999999999999
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC---HHHHHHHHHHhCCc----EEEeccCC
Q 029103 85 AAVVVYDITSM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK---NEEGELYAQENGLS----FLETSAKS 156 (199)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 156 (199)
++++|||++++ .+++.+..|+..+... .++.|+++|+||+|+.+..... ......++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 5788889999988765 3578999999999987644332 23345555566776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHhh
Q 029103 157 AH-NVNELFYEIAKRLAEV 174 (199)
Q Consensus 157 ~~-~v~~~~~~l~~~~~~~ 174 (199)
+. ++.++++.|.+.+...
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 96 9999999998887663
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=3.5e-30 Score=182.37 Aligned_cols=160 Identities=24% Similarity=0.357 Sum_probs=122.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.++.+ ....++.+... ..+..+ ...+.+||+||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999997766 33455555333 333343 378899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYAQ-----ENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||++|+|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888876653 4789999999999986532 2333322221 123579999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=4.2e-28 Score=169.25 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------ccccccc--
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYYR-- 81 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~~~-- 81 (199)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||++.+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998765443334334444444444444 5788999999887653 2345554
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.+...+.. +...++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999988643 3456666654 3688999999999876544432 3577788889999999999999999
Q ss_pred HHHHHHHHHH
Q 029103 162 ELFYEIAKRL 171 (199)
Q Consensus 162 ~~~~~l~~~~ 171 (199)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=185.94 Aligned_cols=165 Identities=23% Similarity=0.290 Sum_probs=121.8
Q ss_pred CCceeeEEEEEcCC---------CCcHHHHHHHHHh---CCCCCCCcCcc-ceeEEEEE--------------EEeCCeE
Q 029103 6 NKNIQVKLVLLGDM---------GTGKTSLVLRFVK---GQFFDFQESTI-GAAFFTQV--------------LSLNEVT 58 (199)
Q Consensus 6 ~~~~~~~i~v~G~~---------~~GKSsL~~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~ 58 (199)
...+.+||+|+|.+ |||||||+++|.+ ..+...+.++. +.++.... ...++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34568999999999 9999999999998 34444343332 22221111 1135567
Q ss_pred EEEEEEe-----------------------CCCccccccccccccc---------------------CCCEEEEEEECCC
Q 029103 59 IKFDIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDITS 94 (199)
Q Consensus 59 ~~v~l~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 94 (199)
+.+.+|| ++|++.|..++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6677777777877777 7999999999999
Q ss_pred H--HHHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCcccccCCHHHHHHHHHH-hCCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 95 M--DSFERAKKWVQELQRQ-GNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE-NGLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 95 ~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
+ .+++.+..|+..+... ...+.|+++|+||+|+.+.+.+ .+...++.. .+++++++||++|.|++++|++|.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 8999999999888765 3467999999999999765443 456667665 48899999999999999999999987
Q ss_pred HH
Q 029103 171 LA 172 (199)
Q Consensus 171 ~~ 172 (199)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1.1e-27 Score=173.75 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=112.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe-EEEEEEEeCCCcccccc-cccccccCCCE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYHS-LAPMYYRGAAA 85 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~d~~g~~~~~~-~~~~~~~~~d~ 85 (199)
...++|+++|++|||||||+++|.++.+...+.++ ...... +..++. .+.+.+||+||++.+.. ++..++..+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45899999999999999999999998876655433 233322 444443 67899999999999887 78888999999
Q ss_pred EEEEEECCCHH-HHHHHHH-HHHHHHH--hCCCCceEEEEEeCCCCcccccCCHHHHHHHH-------------------
Q 029103 86 AVVVYDITSMD-SFERAKK-WVQELQR--QGNPNLIMFLVANKVDLEEKRKVKNEEGELYA------------------- 142 (199)
Q Consensus 86 ~i~v~d~~~~~-s~~~~~~-~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------------------- 142 (199)
+++|||+++.. ++..... |...+.. ....+.|+++|+||+|+.+...... ....+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL-IQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH-HHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH-HHHHHHHHHHHHhccchhccccccC
Confidence 99999999854 4555544 4444433 2346799999999999975432211 111111
Q ss_pred ----------------H-Hh--CCcEEEeccCCC------CCHHHHHHHHHHH
Q 029103 143 ----------------Q-EN--GLSFLETSAKSA------HNVNELFYEIAKR 170 (199)
Q Consensus 143 ----------------~-~~--~~~~~~~s~~~~------~~v~~~~~~l~~~ 170 (199)
. .+ +++|+++||++| .|++++|++|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 11 567999999999 9999999999875
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=2.2e-27 Score=167.16 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=118.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+++|++|||||||+++|.+..+.....++.+.+.....+..++. .+.+||+||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45789999999999999999999988777655555555554455555553 5679999999999999999999999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-------C--CcEEEeccC
Q 029103 88 VVYDITSM---DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-------G--LSFLETSAK 155 (199)
Q Consensus 88 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~~ 155 (199)
+|+|++++ .+++.+ ..+ ...+.|+++|+||+|+.+.. ........... + ++++++||+
T Consensus 84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999883 333322 222 23578899999999987531 22222222221 2 579999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCC
Q 029103 156 SAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 156 ~~~~v~~~~~~l~~~~~~~~~ 176 (199)
+|.|++++|++|.+.+.....
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999999877543
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=6.1e-28 Score=195.40 Aligned_cols=164 Identities=21% Similarity=0.349 Sum_probs=124.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i 87 (199)
...++|+|+|.+|||||||+++|.++.+.. ..++.+..+. . +....+.+.+|||+|++.+..++..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE--E--EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE--E--EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 357999999999999999999999887543 3444443332 2 3334578999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 029103 88 VVYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVN 161 (199)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~ 161 (199)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... ..+..... ...+++++++||++|+|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999998888876543 36899999999999975332 22221111 1123469999999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 029103 162 ELFYEIAKRLAEVNPSR 178 (199)
Q Consensus 162 ~~~~~l~~~~~~~~~~~ 178 (199)
++|++|.+.+.+..+..
T Consensus 473 ~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp HHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999987765443
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=3.7e-27 Score=179.85 Aligned_cols=160 Identities=21% Similarity=0.332 Sum_probs=124.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC---CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-----cccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF---DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-----HSLAPMYY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-----~~~~~~~~ 80 (199)
..+||+++|.+|||||||++++.++... ....++.+.... ...+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999876322 123344444333 333433 678999999999988 67888899
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc--ccc----CCHHHHHHHHHHhC---CcE
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE--KRK----VKNEEGELYAQENG---LSF 149 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 149 (199)
+.+|++|+|||++++.+++.+..|...+.... .++.|+++++||+|+.+ .+. ....++..++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999988877655443321 56899999999999876 333 44567788888887 789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHH
Q 029103 150 LETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
+++||++ .++.++|..+++.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999988887553
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=7.1e-27 Score=171.23 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=115.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPM 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~~~~~~ 78 (199)
...++|+|+|.+|||||||+++|.+..+.....+.............. ...+.+|||||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 357999999999999999999999876542222222222222222222 367899999998321 111234
Q ss_pred cccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH---HHHHHHHHhC--CcEEE
Q 029103 79 YYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE---EGELYAQENG--LSFLE 151 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~ 151 (199)
++..+|++++|||++++.+++ ....|+..+... ..+.|+++|+||+|+.+...+... ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 567889999999999887654 223566655443 357899999999999876665544 4556666666 88999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhC
Q 029103 152 TSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+||++|+|++++|++|.+.+.+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=8e-28 Score=185.04 Aligned_cols=158 Identities=19% Similarity=0.328 Sum_probs=117.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
..++|+|+|.+|||||||+++|.++.+... .++.+..+ ..+ ....+.+.+|||||++.+..++..++..+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEE--EETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEE--ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999987765432 23333332 222 2334788999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCcccccCCHHHHHHHH-----HHhCCcEEEeccCCCCCHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQG-NPNLIMFLVANKVDLEEKRKVKNEEGELYA-----QENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~ 162 (199)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... ..+..... ...+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999887777765433 46899999999999976432 22221111 11345799999999999999
Q ss_pred HHHHHHHHHHh
Q 029103 163 LFYEIAKRLAE 173 (199)
Q Consensus 163 ~~~~l~~~~~~ 173 (199)
+|++|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.8e-27 Score=166.91 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=121.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR 81 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~------~~~~~~~~ 81 (199)
...++|+++|++|||||||+++|.+..+.....+..+.+.....+...+ ..+.+|||||++.+. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3579999999999999999999998655443444445555555555544 678899999998774 23445553
Q ss_pred --CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 82 --GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 82 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
.+|++++|+|.++ ++....|+..+.. .+.|+++++||+|+.+...+. .....++..++++++++|++++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999875 4455667766654 478899999999987654443 346778888899999999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 029103 160 VNELFYEIAKRLAEVN 175 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~ 175 (199)
++++|++|.+.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999886644
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=2.3e-27 Score=168.72 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC-----------ccccccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG-----------QERYHSLAPMY 79 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g-----------~~~~~~~~~~~ 79 (199)
++|+++|++|||||||+++|.+..+.....+..+... ...... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998876655544433322 222222 688999999 55666666667
Q ss_pred ccC-CCEEEEEEECCCHHHHHHH-HHHHHH---------HHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc
Q 029103 80 YRG-AAAAVVVYDITSMDSFERA-KKWVQE---------LQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS 148 (199)
Q Consensus 80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
+.. ++++++|+++.|..+++.+ ..|... +......+.|+++|+||+|+.+.. ......++..++.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 766 6666666666666666665 455432 122223578999999999987644 55677788888764
Q ss_pred -------EEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103 149 -------FLETSAKSAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 149 -------~~~~s~~~~~~v~~~~~~l~~~~~~~~~ 176 (199)
++++||++|+|++++|++|.+.+.+..+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999999987554
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3.6e-27 Score=168.50 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=107.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC----------ccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAP 77 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g----------~~~~~~~~~ 77 (199)
...++|+|+|.+|||||||+++|.+..+.....+..+.+........+. .+.+||+|| .+.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4579999999999999999999998765554555555444444444433 588999999 566666677
Q ss_pred ccccCC---CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHH-HHHHhCCcEEE
Q 029103 78 MYYRGA---AAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGEL-YAQENGLSFLE 151 (199)
Q Consensus 78 ~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~ 151 (199)
.++..+ |++++|+|++++.+.... .++..+.. .+.|+++|+||+|+.+...... .+... +....+.++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDV-QMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 777666 999999999987665543 22222322 5788999999999976544322 11111 22234678999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 029103 152 TSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~ 172 (199)
+||++|+|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=5.5e-26 Score=169.24 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=118.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc------cccc-
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA------PMYY- 80 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~------~~~~- 80 (199)
...++|+++|++|||||||+++|++..+.....+..+.+.....+.. ....+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35789999999999999999999987654333343333333333333 34688999999998776533 4555
Q ss_pred -cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 81 -RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 81 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
..+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+.+...+.. ....++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986543 235555544 3789999999999876554432 36778888999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029103 160 VNELFYEIAKRLAE 173 (199)
Q Consensus 160 v~~~~~~l~~~~~~ 173 (199)
++++|++|.+.+..
T Consensus 154 i~el~~~i~~~~~~ 167 (258)
T 3a1s_A 154 LEELKEKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998753
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.2e-27 Score=181.48 Aligned_cols=157 Identities=21% Similarity=0.258 Sum_probs=119.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC---CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---cccccccCCCE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFD---FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---LAPMYYRGAAA 85 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---~~~~~~~~~d~ 85 (199)
||+++|..|||||||++++.++.+.. ...++.+.+... ++ ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887553322 134555555542 22 347899999999999964 35789999999
Q ss_pred EEEEEECCCH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc-------ccCCHHHHHHHHHH----hCCcEEEe
Q 029103 86 AVVVYDITSM--DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK-------RKVKNEEGELYAQE----NGLSFLET 152 (199)
Q Consensus 86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 152 (199)
+|+|||++++ +..+.+..|+..+... .+++|+++++||+|+.+. +++...+++++++. ++++|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 3444444555555444 568999999999999753 34556666777775 67899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhC
Q 029103 153 SAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 153 s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
||++ .++.++|..|++.+..+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhH
Confidence 9998 689999999998776543
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=3e-26 Score=174.82 Aligned_cols=167 Identities=17% Similarity=0.097 Sum_probs=124.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe-EEEEEEEeCCCccccc----------
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV-TIKFDIWDTAGQERYH---------- 73 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~d~~g~~~~~---------- 73 (199)
+++...-.|+++|.+|||||||+|+|++..+... .+..+++........... ..++.+|||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 4556788999999999999999999998776432 222222222222222223 5688999999986544
Q ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEE
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLE 151 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 151 (199)
..+..++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.............+...++ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 4556778999999999999988777776666776655 468899999999997434444666677777765 78999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhC
Q 029103 152 TSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+||++|.|++++|++|.+.+.+..
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999999987653
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=7.3e-27 Score=164.09 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=112.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------APMY 79 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~~~ 79 (199)
...+|+|+|.+|||||||+++|.+.... ....+..+.+.....+..++. .+.+|||||.+.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999986542 122233344445555666653 4789999998653211 1235
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+..+|++++|+|++++.+++. ..|+..+......+.|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999998877653 4777777776566899999999999854211 11122467899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029103 160 VNELFYEIAKRLAE 173 (199)
Q Consensus 160 v~~~~~~l~~~~~~ 173 (199)
++++|++|.+.+..
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887754
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=4.2e-27 Score=191.91 Aligned_cols=165 Identities=19% Similarity=0.280 Sum_probs=125.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEE--------EeCCeEEEEEEEeCCCcccccccccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVL--------SLNEVTIKFDIWDTAGQERYHSLAPM 78 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~l~d~~g~~~~~~~~~~ 78 (199)
....+||+++|.+|||||||+++|++..+.....++.+.+...... ..++..+.+.+||+||++.+..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4568999999999999999999999988777677777776665421 11234578999999999999999999
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
++..+|++|+|+|+++. +.+..|+..+.... ++.|+++|+||+|+.+...+.......+....+++++++||++|.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999998765 45567888887763 578999999999998877777888888888889999999999999
Q ss_pred CHHHHHHHHHHHHHhhC
Q 029103 159 NVNELFYEIAKRLAEVN 175 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~~ 175 (199)
|++++|++|.+.+.+..
T Consensus 194 gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -CTTHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999887644
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=6.6e-26 Score=156.98 Aligned_cols=150 Identities=22% Similarity=0.171 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc-------cccccccccC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY-------HSLAPMYYRG 82 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~-------~~~~~~~~~~ 82 (199)
.+|+++|++|+|||||+++|.+..+. ....+....+.........+. .+.+||+||...+ ...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 222233333344444445543 6789999998763 3345567899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 029103 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN 161 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 161 (199)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. .+...++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999987533222 122222222 468899999999997642 2223344 5676 79999999999999
Q ss_pred HHHHHHHHHH
Q 029103 162 ELFYEIAKRL 171 (199)
Q Consensus 162 ~~~~~l~~~~ 171 (199)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 118
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=2.2e-26 Score=172.42 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=117.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccc------cccccccc-
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYH------SLAPMYYR- 81 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~------~~~~~~~~- 81 (199)
..++|+++|++|||||||+++|++........+ +++.......+.. ...+.+||+||+..+. .++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 368999999999999999999998653332233 4444444455555 6679999999998775 34455664
Q ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 82 -GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+.+...+. .....++..++++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999876543 345555554 478899999999987654443 3457788888999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 029103 161 NELFYEIAKRLAE 173 (199)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (199)
+++|++|.+.+..
T Consensus 152 ~el~~~i~~~~~~ 164 (272)
T 3b1v_A 152 DQVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=3.6e-26 Score=170.00 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc----------cccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----------LAPMYY 80 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----------~~~~~~ 80 (199)
.+|+++|++|||||||+|+|.+........+..+.+.....+...+. .+.+||+||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 47999999999999999999987654444555555555666655554 788999999877653 345566
Q ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 81 --RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
..+|++|+|+|+++.++...+..+ +. ..+.|+++++||+|+.+...... ....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999986554443332 22 23789999999999876443322 2455777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 029103 159 NVNELFYEIAKR 170 (199)
Q Consensus 159 ~v~~~~~~l~~~ 170 (199)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999886
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=2.2e-25 Score=159.03 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=109.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC----------ccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLAP 77 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g----------~~~~~~~~~ 77 (199)
...++|+|+|.+|||||||+++|.+.... ...+..+.+.......... .+.+||+|| .+.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45789999999999999999999987633 3344444444433333332 477999999 555666666
Q ss_pred ccccCC---CEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--CCHHHHHHHHHH-hCCcE
Q 029103 78 MYYRGA---AAAVVVYDITSMDSF--ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--VKNEEGELYAQE-NGLSF 149 (199)
Q Consensus 78 ~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~ 149 (199)
.++..+ |++++|+|.++..+. ..+..|+.. . +.|+++|+||+|+.+... ....+...+... .++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 666665 999999998865332 233333332 2 688999999999864332 222334444444 34789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHh
Q 029103 150 LETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+++||++|.|++++|++|.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999988754
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=7.4e-25 Score=164.47 Aligned_cols=159 Identities=22% Similarity=0.176 Sum_probs=120.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc------cccccc--
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS------LAPMYY-- 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~------~~~~~~-- 80 (199)
+.++|+++|++|||||||+++|.+..+.....+..+.+.........+ ..+.+||+||+..+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 368999999999999999999998766444455555555555555554 3588999999887765 445555
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
..+|++++|+|+++.+ ....|...+... ...|+++++||+|+.+....... ...+...++++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999998753 233444444443 23889999999998754433332 67778888999999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 029103 161 NELFYEIAKRLAEVN 175 (199)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (199)
+++|++|.+.+....
T Consensus 154 ~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 154 EELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999886643
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=6.7e-26 Score=170.28 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=114.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc----------ccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----------APM 78 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~----------~~~ 78 (199)
..++|+++|.+|+|||||+|+|.+........+..+.+.....+...+ ..+.+|||||+..+... +..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 368999999999999999999998765433444444444444444444 46789999998876632 222
Q ss_pred c--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103 79 Y--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (199)
Q Consensus 79 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
+ ...+|++++|+|+++.+....+ ...+... +.|+++|+||+|+.+..... .....+...++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 3 2799999999999886554443 3334333 78899999999987544322 224667778899999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 029103 157 AHNVNELFYEIAKRLAE 173 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~ 173 (199)
|.|++++|++|.+.+..
T Consensus 153 g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKAN 169 (274)
T ss_dssp GHHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999877654
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=8.7e-26 Score=164.64 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=109.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeC-CeEEEEEEEeCCCcc----------cccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLN-EVTIKFDIWDTAGQE----------RYHSLA 76 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~d~~g~~----------~~~~~~ 76 (199)
...++|+|+|.+|||||||+++|++...........+.+......... .....+.+|||||.. .+...+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 457899999999999999999999876322233333344443344443 444678899999953 334444
Q ss_pred cccccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HH-HHHHHHH------
Q 029103 77 PMYYRG---AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EE-GELYAQE------ 144 (199)
Q Consensus 77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~-~~~~~~~------ 144 (199)
..++.. +|++++|+|.+++.+. ....++..+.. .+.|+++|+||+|+.+...... .. ...+...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 455544 7889999999875332 22344444443 4688999999999875433211 11 1222222
Q ss_pred hCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 145 NGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 145 ~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 5678999999999999999999999986643
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-25 Score=163.32 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=105.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC-
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG- 82 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~- 82 (199)
....++|+++|++|+|||||+++|.+..+... ..++.+. ......+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 34589999999999999999999998775442 2222211 1244578899999999998888888877
Q ss_pred ---CCEEEEEEECC-CHHHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHhCCc
Q 029103 83 ---AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQENGLS 148 (199)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 148 (199)
+|++|+|+|++ +++++.....|+..+... ...+.|+++|+||+|+.+..... ..+...++..+++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887776654 45789999999999997655433 34456666777788
Q ss_pred EEEeccCCCCC
Q 029103 149 FLETSAKSAHN 159 (199)
Q Consensus 149 ~~~~s~~~~~~ 159 (199)
++++|+++|++
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998765
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=1.1e-24 Score=165.56 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=108.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc--------cccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY--------HSLAPM 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~--------~~~~~~ 78 (199)
....+|+|+|.+|||||||+|+|++..+... ..+.......... ......++.+|||||...+ ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4567899999999999999999998776421 1221111211112 2233568999999998753 344556
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc-CCHHHHHHHHHHhCCcEEEeccCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK-VKNEEGELYAQENGLSFLETSAKSA 157 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
+++.+|++++|+|++++.+... ..++..+... ..+.|+++++||+|+.+... . ......+ ....+++++||++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDE 157 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCH
T ss_pred HHhcCCEEEEEEECCCCCChHH-HHHHHHHHhh-cCCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCC
Confidence 7899999999999987643322 2223444433 35789999999999865332 1 1112222 12346899999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 029103 158 HNVNELFYEIAKRLAEV 174 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~~ 174 (199)
.|++++|+.|.+.+.+.
T Consensus 158 ~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 158 RQVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHhcccC
Confidence 99999999998877543
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=7.6e-24 Score=169.54 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=98.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc--------ccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY 79 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~--------~~~ 79 (199)
..++|+|+|.+|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3689999999999999999999876422 22223333333344445544 568899999987765433 346
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+..+|++++|+|++++.+++.+..+...+... .+.|+++|+||+|+.+.... ....+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 88999999999999887664333333323222 27899999999999765432 22334444347899999999999
Q ss_pred HHHHHHHHHHHHH
Q 029103 160 VNELFYEIAKRLA 172 (199)
Q Consensus 160 v~~~~~~l~~~~~ 172 (199)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999987
No 127
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=4.8e-23 Score=162.56 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=117.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEE---------E----------EEeCCeEEEEEEEe
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQ---------V----------LSLNEVTIKFDIWD 65 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~---------~----------~~~~~~~~~v~l~d 65 (199)
+..+..++|+++|++++|||||+++|++........ ......... . .........+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 455678999999999999999999998743221100 000000000 0 00012236899999
Q ss_pred CCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH--HHHHHHHH
Q 029103 66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN--EEGELYAQ 143 (199)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~ 143 (199)
|||++.|...+...+..+|++++|+|++++.++.+...++..+.... ..|+++++||+|+.+...... .+...+..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999998766777777777666552 257999999999976432211 11122221
Q ss_pred H---hCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 144 E---NGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 144 ~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
. .+++++++||++|+|+++++++|.+.+....
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 1 1578999999999999999999998775443
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=4.6e-23 Score=160.32 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=117.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---------cccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---------LAPM 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---------~~~~ 78 (199)
...++|+++|.+|||||||+++|.+........+.............. ...+.+|||||...+.. ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356899999999999999999999765422222222222222223222 35688999999754321 1123
Q ss_pred cccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCC
Q 029103 79 YYRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKS 156 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||.|+.+.... .+...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998776 56777788888876533 7899999999999764432 344556667789999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029103 157 AHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~~ 174 (199)
|+|++++|++|.+.+.+.
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999998664
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=8.7e-24 Score=168.40 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=113.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc----------ccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE----------RYHSLAP 77 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~----------~~~~~~~ 77 (199)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++. .+.+|||||+. .|.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999986543 222233333333334444543 58899999983 3333322
Q ss_pred -ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH-HHHHH----HhCCcEEE
Q 029103 78 -MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQ----ENGLSFLE 151 (199)
Q Consensus 78 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~ 151 (199)
.++..+|++++|+|++++.+.+.. .|+..+.. .+.|+++++||+|+.+.......+. ..+.. ..++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 367889999999999988776664 56666654 4789999999999976544332222 22222 24679999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 152 TSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
+||++|.|++++|+.+.+.+.....+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~~~~ 353 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENHSLR 353 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred EecccCCCHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999988765533
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=6.8e-24 Score=163.33 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=116.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----cccccccccc---CCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMYYR---GAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----~~~~~~~~~~---~~d 84 (199)
+|+|+|.++||||||+++|++........+..+.......+.+.+ ...+.+||+||..+ +..+...|++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 588999999999999999987653321222222222223333433 24688999999643 3334455544 499
Q ss_pred EEEEEEECCC---HHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEeccCCC
Q 029103 85 AAVVVYDITS---MDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSA 157 (199)
Q Consensus 85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 157 (199)
++|+|+|+++ +++++.+..|+.++..+. ..+.|+++|+||+|+.+.. .....+...++ .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 788888889999988764 2589999999999987532 33455666665 68999999999
Q ss_pred CCHHHHHHHHHHHHHhhC
Q 029103 158 HNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 158 ~~v~~~~~~l~~~~~~~~ 175 (199)
+|+++++++|.+.+.+..
T Consensus 315 ~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTP 332 (342)
T ss_dssp STTHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHhhCc
Confidence 999999999999987643
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.9e-23 Score=167.28 Aligned_cols=164 Identities=21% Similarity=0.190 Sum_probs=116.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC----------cccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG----------QERYHSLA 76 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g----------~~~~~~~~ 76 (199)
...++|+++|.+|+|||||+++|.+.... ....+..+.+.....+..++. .+.+||||| ++.|....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45789999999999999999999975421 112222223322233444443 688999999 45555444
Q ss_pred c-ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh-----CCcEE
Q 029103 77 P-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN-----GLSFL 150 (199)
Q Consensus 77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 150 (199)
. .++..+|++++|+|++++.. +....|+..+.. .+.|+++|+||+|+.+.......+........ +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 36788999999999987533 233455555554 46899999999999876665555555555554 57899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 151 ETSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
++||++|.|++++|++|.+.+.....+
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988776544
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=2e-24 Score=170.29 Aligned_cols=159 Identities=17% Similarity=0.189 Sum_probs=114.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-------cc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------PM 78 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-------~~ 78 (199)
....++|+|+|.+|+|||||+++|.+..+. ....+..+.+.........+.. .+.+|||||++.+..+. ..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 346899999999999999999999877653 2223333334444444444432 78899999998776553 34
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCC
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAH 158 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
++..+|++++|+|++.. .....|+..+... +.|+++|+||+|+.+.... .....+...++++++++||++|.
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence 78899999999998432 2335666666655 7889999999999865543 55666667788999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 029103 159 NVNELFYEIAKRLAEV 174 (199)
Q Consensus 159 ~v~~~~~~l~~~~~~~ 174 (199)
|++++|++|.+.+.+.
T Consensus 182 gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 182 GFDDIGKTISEILPGD 197 (423)
T ss_dssp STTTHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHhhhhh
Confidence 9999999999998554
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=3.3e-23 Score=160.09 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=100.5
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD 126 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 126 (199)
.+.+.+||++|++.+...|..++.+++++|+|||+++ ..+++....|+..+.... ..+.|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5788999999999999999999999999999999998 467888888988887643 47899999999999
Q ss_pred Ccccc---------------cCCHHHHHHHHH-----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 127 LEEKR---------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 127 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+.+.. .++..++..++. ..++.++++||+++.|+.++|+++.+.+.+..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 86432 355677777776 35678999999999999999999999997754
No 134
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=2.5e-22 Score=158.68 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=104.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcC--ccceeEEEEEEEe-------------C--C----eEEEEE
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIKFD 62 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~v~ 62 (199)
.+..++|+++|+.++|||||+++|.+.. +..+..+ ++...+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4568999999999999999999998542 2222233 2222332222211 1 1 237899
Q ss_pred EEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHH
Q 029103 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGEL 140 (199)
Q Consensus 63 l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~ 140 (199)
+||+||++.|...+...+..+|++|+|+|++++....+..+.+..+... ...|+++++||+|+.+.... ...+...
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999999998877777788899999999998642122222333333322 23478999999999764432 2233444
Q ss_pred HHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 141 YAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 141 ~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+... .+++++++||++|+|+++++++|.+.+..
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 4443 36789999999999999999999987754
No 135
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=147.45 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=106.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC--ccceeEEEEEEEeCCeEEEEEEEeCCCcc-----------ccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES--TIGAAFFTQVLSLNEVTIKFDIWDTAGQE-----------RYH 73 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-----------~~~ 73 (199)
....++|+|+|.+|||||||+++|++..+.....+ ..+...........+ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34589999999999999999999998776544443 223333333344443 467899999943 233
Q ss_pred ccccccccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC------HHHHHHHHHHh
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDS--FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK------NEEGELYAQEN 145 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~ 145 (199)
..+...++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.+...+. ......+...+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 344455678899999999875322 22222222222211 245899999999986544333 23567778888
Q ss_pred CCcEEEeccCCC-----CCHHHHHHHHHHHHHhhC
Q 029103 146 GLSFLETSAKSA-----HNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 146 ~~~~~~~s~~~~-----~~v~~~~~~l~~~~~~~~ 175 (199)
+..|+.++...+ .++.++|+.+.+.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 888888887754 689999999988887643
No 136
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=3e-22 Score=158.41 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=111.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHHhCC---CCCCCcC--ccceeEEEEEEEe-------------C--C----eEEE
Q 029103 5 SNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ---FFDFQES--TIGAAFFTQVLSL-------------N--E----VTIK 60 (199)
Q Consensus 5 ~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 60 (199)
......++|+++|++++|||||+++|.+.. +..+..+ ++...+....... . + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 345678999999999999999999998542 2222333 2222332222211 1 1 1378
Q ss_pred EEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHH
Q 029103 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEG 138 (199)
Q Consensus 61 v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 138 (199)
+.+||+||++.|...+...+..+|++|+|+|+++.....+..+.+..+... ...|+++++||+|+.+.... ...+.
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 999999999998877777778899999999998642122222233333333 23578999999998764321 12223
Q ss_pred HHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 139 ELYAQE---NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 139 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
..+... .+++++++||++|+|+++++++|.+.+..
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 333332 36789999999999999999999987754
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=6.1e-22 Score=159.20 Aligned_cols=157 Identities=19% Similarity=0.170 Sum_probs=109.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCC----C---CCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ----F---FDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYY 80 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~ 80 (199)
...++|+++|++++|||||+++|.+.. . ..+..+.++.+.....+..+ ...+.+||+||++.|...+...+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHH
Confidence 468999999999999999999999765 1 12222222222222223333 36789999999999988888889
Q ss_pred cCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHh----CCcEEE
Q 029103 81 RGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQEN----GLSFLE 151 (199)
Q Consensus 81 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~ 151 (199)
..+|++++|+|+++ +.+.+. +..+.. .+.|.++++||+|+.+.... ...+...+.... +.++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~----l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEH----MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHH----HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHH----HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999987 333333 333333 25778999999999753221 122334444444 578999
Q ss_pred eccCCCCCHHHHHHHHHHHHHh
Q 029103 152 TSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+||++|+|+++++++|.+.+..
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhcC
Confidence 9999999999999999998864
No 138
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=2.3e-22 Score=148.87 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=106.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--------ccccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMY 79 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~ 79 (199)
...++|+|+|.+|||||||+|+|++........+..+++..............+.+|||||.. .+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 468999999999999999999999877654333332233222222222234578899999963 222222222
Q ss_pred ----ccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC------CHHHHHHHHHHhCCc
Q 029103 80 ----YRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV------KNEEGELYAQENGLS 148 (199)
Q Consensus 80 ----~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~ 148 (199)
.+.+|++++|+|+++.... ..+..++..+......+.|+++++||.|+.+.... .......+...++..
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~ 178 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGR 178 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCe
Confidence 3899999999999853221 12223333332222237899999999998653211 113456777778888
Q ss_pred EEEeccCC-----CCCHHHHHHHHHHHHHhhCC
Q 029103 149 FLETSAKS-----AHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 149 ~~~~s~~~-----~~~v~~~~~~l~~~~~~~~~ 176 (199)
++.++... +.++.++++.|.+.+.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 179 VCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 88777665 47899999999999887544
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=4.8e-22 Score=158.50 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc---------cccccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY---------HSLAPMYY 80 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~---------~~~~~~~~ 80 (199)
.+|+|+|.||||||||+|+|.+.... ....+..+.+.........+. .+.+|||||.+.. ...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987643 222333333444444545543 5789999997642 23456678
Q ss_pred cCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH-HHHHHHhCC-cEEEeccCC
Q 029103 81 RGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG-ELYAQENGL-SFLETSAKS 156 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~ 156 (199)
+.+|++++|+|++++.+.. .+..|+. . .+.|+++|+||+|+.+.. .... .++. .+++ .++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754332 2233332 2 267899999999986421 1222 3333 4566 789999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029103 157 AHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~~ 174 (199)
|.|+.++|++|.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999998754
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.3e-22 Score=151.37 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=104.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCc-cceeEEEEEEEeCCeEEEEEEEeCCCcccccccc--------
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQEST-IGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA-------- 76 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~-------- 76 (199)
....++|+|+|++|||||||+++|++.... ....+. .+........... ...+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345799999999999999999999987633 222222 2233333333333 3568899999987654322
Q ss_pred ---cccccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCcccccCCH-------HHHHHHHHH
Q 029103 77 ---PMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVAN-KVDLEEKRKVKN-------EEGELYAQE 144 (199)
Q Consensus 77 ---~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~ 144 (199)
..+++.+|++++|+|+++.... ..+..++..+... ....|.++++| |.|+.... ... .....+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence 2257889999999999863222 2222333333221 11345666665 99987431 111 223335555
Q ss_pred hCCcE-----EEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 145 NGLSF-----LETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 145 ~~~~~-----~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
.+..+ +++||+++.|++++|++|.+.+....
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 55432 78999999999999999999987754
No 141
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=4.1e-22 Score=153.95 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=94.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 125 (199)
..+.+++||++|++.+...|..++++++++|+|||++ +..+++....|+..+.... ..+.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7788999999998887653 4789999999999
Q ss_pred CCccccc--C-------------------CHHHHHHHHHH----------------hCCcEEEeccCCCCCHHHHHHHHH
Q 029103 126 DLEEKRK--V-------------------KNEEGELYAQE----------------NGLSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 126 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
|+.+... + +..++..++.. ..+.++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9864322 1 13445555332 124468999999999999999999
Q ss_pred HHHHhh
Q 029103 169 KRLAEV 174 (199)
Q Consensus 169 ~~~~~~ 174 (199)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=3.8e-22 Score=152.13 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=99.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCC
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANKV 125 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 125 (199)
..+.+++||++|++.+...|..++++++++|+|+|++ +..+++....|+..+.... ..+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3478999999999999999999999999999999665 5677888888888876643 3789999999999
Q ss_pred CCcccc----------------cCCHHHHHHHH----------HHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 126 DLEEKR----------------KVKNEEGELYA----------QENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 126 D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
|+.+.. ..+..++..+. ...++.++++||+++.+|+++|+.+.+.+.+..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 987544 45667777663 345677899999999999999999999998754
No 143
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=2.2e-22 Score=161.25 Aligned_cols=153 Identities=23% Similarity=0.254 Sum_probs=110.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc-ccccc--------cccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE-RYHSL--------APMY 79 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~-~~~~~--------~~~~ 79 (199)
.++|+|+|.||||||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 22333344444445555554 468899999987 65432 2456
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+..+|++++|+|++++.+.+.. .++..+ .+.|+++|+||+|+.+. ....+...+. ..+.+++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 8899999999999987666553 333332 37789999999999653 2333333332 2346899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 029103 160 VNELFYEIAKRLAE 173 (199)
Q Consensus 160 v~~~~~~l~~~~~~ 173 (199)
++++|++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998654
No 144
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=2.1e-22 Score=153.09 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=107.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc---------ccccccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE---------RYHSLAP 77 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~---------~~~~~~~ 77 (199)
....+|+|+|++|||||||+|+|.+..... ...+........... .....++.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~--~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH--TEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE--EETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE--EECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999876432 111111111112222 2234578899999987 2344556
Q ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCC
Q 029103 78 MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKS 156 (199)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
.++..+|++++|+|+++ +.....++..... ..+.|+++++||+|+.............+...++. .++++|+++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 77899999999999976 2222223322222 35789999999999875222223334455555665 699999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 029103 157 AHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 157 ~~~v~~~~~~l~~~~~~~ 174 (199)
++|++++++.|.+.+.+.
T Consensus 159 g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTTHHHHHHHHHTTCCBC
T ss_pred CCCHHHHHHHHHHhCCcC
Confidence 999999999998876553
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=3.3e-22 Score=163.72 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=111.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC--CCCC-----------CcCccceeEEEEEEEe-----CCeEEEEEEEeCCCccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF-----------QESTIGAAFFTQVLSL-----NEVTIKFDIWDTAGQER 71 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~-----------~~~~~~~~~~~~~~~~-----~~~~~~v~l~d~~g~~~ 71 (199)
..+|+|+|+.++|||||+++|+... .... .....+.+.......+ ++..+.+++|||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 5799999999999999999998632 1110 0111223332222222 45568999999999999
Q ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCc---
Q 029103 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLS--- 148 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--- 148 (199)
|...+...+..+|++|+|+|+++..+.+....|+.... .+.|+++++||+|+.+.. .......+....++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence 99888889999999999999998766666666655442 467899999999997643 233445666666764
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 149 FLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
++++||++|.|++++|++|.+.+....
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred EEEeecccCCCchhHHHHHhhcCCCcc
Confidence 899999999999999999998876543
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=1.8e-21 Score=151.23 Aligned_cols=163 Identities=18% Similarity=0.111 Sum_probs=109.7
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc---------cccccccc
Q 029103 10 QVK-LVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER---------YHSLAPMY 79 (199)
Q Consensus 10 ~~~-i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~---------~~~~~~~~ 79 (199)
.++ |+++|.+|||||||+|+|.+...........+.+.....+.+++ ..+.+|||+|... +...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 345 99999999999999999998765322233333344455566666 4678999999622 22222 24
Q ss_pred ccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHh---CCcEEEec
Q 029103 80 YRGAAAAVVVYDITSMD--SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQEN---GLSFLETS 153 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~s 153 (199)
+..+|++++|+|++++. ..+....|...+......+.|+++|+||+|+.+..... ......+.... +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 68899999999999876 55565666666666555688999999999986532100 11222233444 34689999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhC
Q 029103 154 AKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 154 ~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
++++.|+++++++|.+.+....
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHhcccC
Confidence 9999999999999999887654
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=1.8e-22 Score=161.04 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=102.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc--------ccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA--------PMY 79 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~--------~~~ 79 (199)
..++|+++|++|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||+..+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999986432 22223333333333444454 457899999986654332 336
Q ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCC
Q 029103 80 YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHN 159 (199)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+..+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+.+...... ...+ ..+.+++++|+++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~~--~~~~--~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLITS--LEYP--ENITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGSTT--CCCC--TTCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhHH--HHHh--ccCCcEEEEECCCCCC
Confidence 788999999999998755444 45555442 368999999999976544331 1111 1356899999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 029103 160 VNELFYEIAKRLAEVN 175 (199)
Q Consensus 160 v~~~~~~l~~~~~~~~ 175 (199)
+++++++|.+.+....
T Consensus 371 i~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 371 IDSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999887643
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.9e-21 Score=159.01 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=114.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC-----C------cCccceeEEE--EEEEe---CCeEEEEEEEeCCCc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----Q------ESTIGAAFFT--QVLSL---NEVTIKFDIWDTAGQ 69 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~-----~------~~~~~~~~~~--~~~~~---~~~~~~v~l~d~~g~ 69 (199)
....+|+++|+.++|||||+++|+.. ..... . ....+++... ....+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34679999999999999999999862 11110 0 0011111111 11111 455689999999999
Q ss_pred ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC--
Q 029103 70 ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-- 147 (199)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 147 (199)
..|...+...+..+|++|+|+|++++.+.+....|..... .+.|+++++||+|+.+.. .......+....++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9998888888999999999999998766666666655442 478899999999997643 23344556666666
Q ss_pred -cEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 148 -SFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 148 -~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
.++++||++|.|++++|++|.+.+...
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 489999999999999999999888654
No 149
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=2.1e-21 Score=150.48 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=91.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD 126 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 126 (199)
.+.+.+||++|++.+...|..++.+++++|+|||+++ ..+++....|+..+.... ..+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4778999999999999999999999999999999998 678999889998887653 47899999999999
Q ss_pred Ccccc----------------cCCHHHHHHHHH-----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 127 LEEKR----------------KVKNEEGELYAQ-----------ENGLSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 127 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+.+.. ..+..++..++. ..++.++++||+++.|++++|+++.+.+.+..
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 86432 245666666551 34678999999999999999999999987654
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=6.5e-22 Score=159.40 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=99.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCC--CC---------------------------CCcCccceeEEEEEEEeCCeE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FD---------------------------FQESTIGAAFFTQVLSLNEVT 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (199)
...++|+++|.+++|||||+++|+.... .. ......+++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3579999999999999999999986411 00 001112333333333444556
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSF------ERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
..+.+|||||++.|...+..++..+|++|+|+|++++.+. .+....+...... ...|+++++||+|+.+..+
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 7899999999999999999999999999999999986432 2222333333322 2356999999999876322
Q ss_pred CCHHH----HHHHHHHh-----CCcEEEeccCCCCCHHH
Q 029103 133 VKNEE----GELYAQEN-----GLSFLETSAKSAHNVNE 162 (199)
Q Consensus 133 ~~~~~----~~~~~~~~-----~~~~~~~s~~~~~~v~~ 162 (199)
....+ ...+.... +++++++||++|+|+.+
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22222 22233333 45799999999999874
No 151
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=4.2e-23 Score=164.44 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcc--------cccccccccccC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE--------RYHSLAPMYYRG 82 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~--------~~~~~~~~~~~~ 82 (199)
.+|+++|.+|||||||+|+|.+.... ......++++..........+..+.+|||||++ .+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 68999999999999999999976543 234455555555555555556679999999985 455566778899
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 029103 83 AAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGL-SFLETSAKSAHNVN 161 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 161 (199)
+|++++|+|+.++.+... .++..+.. ..+.|+++++||+|+.+.... ..++. ..++ .++++||++|.|+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~ 153 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLG 153 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChH
Confidence 999999999987654433 22222222 357899999999998653211 11122 3454 78999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029103 162 ELFYEIAKRLAEV 174 (199)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (199)
+++++|.+.+.+.
T Consensus 154 ~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 154 DLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHTGGGC
T ss_pred HHHHHHHHhcCcc
Confidence 9999999988653
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=4.5e-21 Score=152.65 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=104.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCC---------------------------CcCccceeEEEEEEEeCCe
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDF---------------------------QESTIGAAFFTQVLSLNEV 57 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (199)
....++|+++|++++|||||+++|+.... ... .....+++.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35689999999999999999999965311 000 0111233444444444555
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS---F---ERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (199)
...+.+|||||++.|...+...+..+|++|+|+|+++... + .+....+..+.. .+.| +++++||+|+.+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCccc
Confidence 5689999999999999888888999999999999987532 1 122333333332 2455 8999999998532
Q ss_pred c------cCCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 029103 131 R------KVKNEEGELYAQENG------LSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 131 ~------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~ 165 (199)
. +....+...+....+ ++++++||++|+|+.++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 111222334444443 5799999999999999765
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.1e-22 Score=141.51 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=89.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC---CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccC--
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF---QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRG-- 82 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~-- 82 (199)
...++|+++|++|||||||+++|.+..+... ..++.+ .......+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 5678999999999999999999998765431 111111 12244678899999999988888777766
Q ss_pred --CCEEEEEEECC-CHHHHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCccccc
Q 029103 83 --AAAAVVVYDIT-SMDSFERAKKWVQELQRQ----GNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 83 --~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~ 132 (199)
+|++++|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899998888888776543 346899999999999976543
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.8e-22 Score=151.64 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=92.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-C-------cCccceeEEEEEEEeCCeEEEEEEEeCCCcccc------
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-Q-------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY------ 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~------ 72 (199)
+...++|+|+|.+|+|||||+|+|++...... + .++.+.+........++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 45689999999999999999999887654332 2 344444444444444555578999999997322
Q ss_pred -cccc-------cccc-------------cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 73 -HSLA-------PMYY-------------RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 73 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
..+. ..++ ..+|+++++++.++......-..++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 1111 1112 237789999977652211222334444432 78999999999986433
Q ss_pred cCCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 132 KVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
+... .........++++++.+|+++++|+.+++++|.+.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 3221 2334445567899999999999999999999887653
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.9e-23 Score=168.74 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=111.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
...+|+++|++++|||||+++|.+..+.....+..+.+......... ....+.||||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 35789999999999999999999865543333333333222222221 22368899999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHH---HHHh--CCcEEEeccCCCCCHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELY---AQEN--GLSFLETSAKSAHNVNE 162 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~~v~~ 162 (199)
|+|+++....+. ..++..+. ..+.|+++++||+|+.+..... ......+ ...+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt-~e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQT-VESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHH-HHHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHH-HHHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999997543333 23333333 3467899999999986432111 1111111 0111 24799999999999999
Q ss_pred HHHHHHHHHHhhC
Q 029103 163 LFYEIAKRLAEVN 175 (199)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (199)
+|++|...+....
T Consensus 158 Lle~I~~l~~~~~ 170 (537)
T 3izy_P 158 LAEATIALAEMLE 170 (537)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHhhhccc
Confidence 9999998876443
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=1.2e-20 Score=154.67 Aligned_cols=160 Identities=22% Similarity=0.193 Sum_probs=107.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC----cCccceeEEEEEE------------EeCCeEEEEEEEeCCCcccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ----ESTIGAAFFTQVL------------SLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~v~l~d~~g~~~~ 72 (199)
...+|+++|++++|||||+++|.+..+.... ..+.+........ ........+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999999876443211 1122211111000 00011125899999999999
Q ss_pred cccccccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-------------HH
Q 029103 73 HSLAPMYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-------------NE 136 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~~ 136 (199)
..++...+..+|++|+|+|+++ +.+++.+. .+.. .+.|+++++||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999989999999999999998 55554433 2222 478899999999986432110 00
Q ss_pred ----------HHHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHHHHHhhC
Q 029103 137 ----------EGELYAQENG---------------LSFLETSAKSAHNVNELFYEIAKRLAEVN 175 (199)
Q Consensus 137 ----------~~~~~~~~~~---------------~~~~~~s~~~~~~v~~~~~~l~~~~~~~~ 175 (199)
+......+.+ .+++++||++|.|+++++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0111111222 37999999999999999999999886543
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=156.83 Aligned_cols=164 Identities=13% Similarity=0.210 Sum_probs=91.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCc--------CccceeEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER 71 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~-------~~ 71 (199)
...++|+|+|++|+|||||+++|.+..... ... ++.+...........+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 457899999999999999999987654322 111 23333333333334556678999999998 55
Q ss_pred cccccc-------ccccCC-------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 72 YHSLAP-------MYYRGA-------------AAAVVVYDITSMDSFERAK-KWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 72 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
+..++. .++..+ ++++|+++.+ ..++..+. .|+..+ ..+.|+++|+||+|+.+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 555554 444333 3455554431 23343332 343333 467899999999999765
Q ss_pred ccCCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhCCC
Q 029103 131 RKVKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNPS 177 (199)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~~ 177 (199)
.++.. .....++..++++++++|++++.+ ++.|.++.+.+.+..|-
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 54433 355666667789999999999999 99999999998877654
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=5.2e-21 Score=152.54 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=105.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccc-----------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLA----------- 76 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~----------- 76 (199)
..++|+|+|++|||||||+|+|.+.... ....+..+.+.....+..++. .+.+|||+|...+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999986532 112222223333344455554 57899999975432211
Q ss_pred -cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH-HH----HHHhCCcEE
Q 029103 77 -PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE-LY----AQENGLSFL 150 (199)
Q Consensus 77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~ 150 (199)
..++..+|++++|+|+++..+.+.. .+...+.. .+.|+++++||+|+.+.......+.. .+ ....+.+++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2346778999999999876544432 23333332 47889999999998764433332221 22 223457899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103 151 ETSAKSAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~l~~~~~~~~~ 176 (199)
++||++|.|++++|+.+.+.+.....
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999999988876543
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=3.8e-22 Score=157.60 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=103.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHHhC--------CCCCC-------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 6 NKNIQVKLVLLGDMGTGKTSLVLRFVKG--------QFFDF-------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 6 ~~~~~~~i~v~G~~~~GKSsL~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
.....++|+++|++++|||||+++|.+. .+... .....+.+.......+......+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456899999999999999999999873 11110 00122333333444455555678999999999
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc-C--CHHHHHHHHHHhC
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK-V--KNEEGELYAQENG 146 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~--~~~~~~~~~~~~~ 146 (199)
+|...+...+..+|++|+|+|+++... .+...++..+... +.| +++++||+|+.+... . ...+...+...++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888888999999999999987542 3445566555543 567 789999999874211 1 1223445555555
Q ss_pred -----CcEEEeccCCCCC
Q 029103 147 -----LSFLETSAKSAHN 159 (199)
Q Consensus 147 -----~~~~~~s~~~~~~ 159 (199)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999987
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=1.7e-21 Score=153.45 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=110.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC-------CCC-------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~ 74 (199)
+.++|+++|++++|||||+++|.+.. +.. ......+.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 47899999999999999999998741 100 0011223333333344444556789999999999988
Q ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccccc---CCHHHHHHHHHHhC----
Q 029103 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRK---VKNEEGELYAQENG---- 146 (199)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 146 (199)
.+...+..+|++|+|+|+++.... +...++..+.. .+.| +++++||+|+.+... ....+...+...++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999875322 22333344433 3567 689999999874211 11234455666655
Q ss_pred -CcEEEeccCCCCC----------HHHHHHHHHHHHHh
Q 029103 147 -LSFLETSAKSAHN----------VNELFYEIAKRLAE 173 (199)
Q Consensus 147 -~~~~~~s~~~~~~----------v~~~~~~l~~~~~~ 173 (199)
++++++||++|.+ +.++++.|.+.+..
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999764 78888888776653
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=6.5e-22 Score=160.22 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=81.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC------------------CCCCC--cCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FFDFQ--ESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~l~d~~g 68 (199)
...+|+|+|++|+|||||+++|+... ..+.. ....+.+.......+......+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46899999999999999999996211 00000 00011222222233333457899999999
Q ss_pred cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
+..|...+..+++.+|++|+|+|++++........| ..+.. .++|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999899999999999999999986555554333 33332 4789999999999864
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=4.4e-21 Score=152.68 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=104.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCC--CCCC----------cCc-------------------cceeEEEEEEEeCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQF--FDFQ----------EST-------------------IGAAFFTQVLSLNE 56 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~--~~~~----------~~~-------------------~~~~~~~~~~~~~~ 56 (199)
...++|+++|++++|||||+++|++... .... ..+ .+++.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4579999999999999999999986531 1000 000 11122122223334
Q ss_pred eEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc--C-
Q 029103 57 VTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK--V- 133 (199)
Q Consensus 57 ~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~- 133 (199)
....+.+|||||++.|...+..++..+|++|+|+|++++. ..+...++..+... ...|+++++||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence 4567899999999999888888899999999999998753 23334454444433 2236899999999975211 1
Q ss_pred -CHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Q 029103 134 -KNEEGELYAQENG-----LSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 134 -~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~ 165 (199)
...+...+...++ ++++++||++|+|+.++++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1233455566666 6799999999999988543
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=1.6e-21 Score=151.94 Aligned_cols=147 Identities=10% Similarity=0.084 Sum_probs=105.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEE
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (199)
+|+++|++++|||||+++|+ ...++++.. ...+......+.+|||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~--~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDIT--MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSE--EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEee--EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999987 111111212 22344445579999999999998777778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEe-CCCCcccccCCH--HHHHHHHHHh---CCcEEE--eccCC---CCC
Q 029103 92 ITSMDSFERAKKWVQELQRQGNPNLIM-FLVAN-KVDLEEKRKVKN--EEGELYAQEN---GLSFLE--TSAKS---AHN 159 (199)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~s~~~---~~~ 159 (199)
++ ..+.+..+++..+... +.|. ++++| |+|+ +...... .+...+.... .+++++ +||++ ++|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 4455556666655544 4566 88888 9998 4332211 2334444333 368999 99999 999
Q ss_pred HHHHHHHHHHHHHhh
Q 029103 160 VNELFYEIAKRLAEV 174 (199)
Q Consensus 160 v~~~~~~l~~~~~~~ 174 (199)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999987653
No 164
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=3.2e-21 Score=147.54 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=95.4
Q ss_pred CeEEEEEEEeCCCcccccccccccccCCCEEEEEEECC----------CHHHHHHHHHHHHHHHHhC-CCCceEEEEEeC
Q 029103 56 EVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIT----------SMDSFERAKKWVQELQRQG-NPNLIMFLVANK 124 (199)
Q Consensus 56 ~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK 124 (199)
...+.+++||++|++.+...|..++++++++|+|||++ +..+++....|+..+.... ..+.|+++++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 34578999999999999999999999999999999998 6788888888888887654 478999999999
Q ss_pred CCCcccc---------------cCCHHHHHHHHH-Hh--------------------------CCcEEEeccCCCCCHHH
Q 029103 125 VDLEEKR---------------KVKNEEGELYAQ-EN--------------------------GLSFLETSAKSAHNVNE 162 (199)
Q Consensus 125 ~D~~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~s~~~~~~v~~ 162 (199)
+|+.+.. .....++..+.. .. ++.++++||+++.+++.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 9985421 113444433332 22 46789999999999999
Q ss_pred HHHHHHHHHHh
Q 029103 163 LFYEIAKRLAE 173 (199)
Q Consensus 163 ~~~~l~~~~~~ 173 (199)
+|+.+.+.+.+
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=1.8e-22 Score=160.68 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=103.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCCC---------------------------cCccceeEEEEEEEeCCeE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDFQ---------------------------ESTIGAAFFTQVLSLNEVT 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 58 (199)
...++|+++|++++|||||+++|+.. .+.... ....+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45799999999999999999999864 222110 0011222222223344455
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHH-------HHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKK-------WVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-------~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
..+.+|||||+++|...+..++..+|++|+|+|+++ .+++.... ++...... ...|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 679999999999999888889999999999999998 66664332 22222222 224589999999987521
Q ss_pred ------cCCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Q 029103 132 ------KVKNEEGELYAQENG-----LSFLETSAKSAHNVNELFY 165 (199)
Q Consensus 132 ------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~ 165 (199)
+....+...+....+ ++++++||++|+|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 111234555555555 6799999999999986654
No 166
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=4.3e-20 Score=144.28 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=96.3
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCC
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITS----------MDSFERAKKWVQELQRQG-NPNLIMFLVANKVD 126 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 126 (199)
.+.+.+||++|++.+...|..++++++++|+|||+++ ..+++....|+..+.... ..+.|+++++||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3789999999999999999999999999999999998 889999999999988753 47899999999999
Q ss_pred Cccccc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEeccCCCCCHHHH
Q 029103 127 LEEKRK---V---------------------------KNEEGELYA-----QE--------NGLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 127 ~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~~ 163 (199)
+.+... . ...++..++ .. .++.++++||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 864322 1 124444442 22 2466789999999999999
Q ss_pred HHHHHHHHHhh
Q 029103 164 FYEIAKRLAEV 174 (199)
Q Consensus 164 ~~~l~~~~~~~ 174 (199)
|+++.+.+.+.
T Consensus 376 F~~v~~~I~~~ 386 (402)
T 1azs_C 376 FNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.1e-21 Score=157.14 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=102.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCC--------cccccccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG--------QERYHSLAPMYY 80 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g--------~~~~~~~~~~~~ 80 (199)
...+|+|+|.+|||||||+|+|.+..+. ......+++..............+.+||||| ++.+...+..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4679999999999999999999986543 2344556666666666666677899999999 555666777888
Q ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 029103 81 RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG-LSFLETSAKSAHN 159 (199)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 159 (199)
..+|++|+|+|..+..... ..++..+.. ..+.|+++|+||+|+.+... ...++. ..+ ..++++||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccc
Confidence 9999999999987642222 223322222 25789999999999864321 111111 223 2578999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029103 160 VNELFYEIAKRLAEV 174 (199)
Q Consensus 160 v~~~~~~l~~~~~~~ 174 (199)
+.++++.+.+.+...
T Consensus 172 v~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNI 186 (456)
T ss_dssp HHHHHHHHHTTGGGS
T ss_pred hHHHHHHHHhhcccc
Confidence 999999998877643
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=1.4e-20 Score=161.41 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=109.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC-------CCC-------CCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ-------FFD-------FQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
....++|+++|++++|||||+++|.+.. +.. ......++++......+......+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3468999999999999999999998741 000 01122333333223344445577899999999999
Q ss_pred cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccccC---CHHHHHHHHHHhC--
Q 029103 73 HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKRKV---KNEEGELYAQENG-- 146 (199)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 146 (199)
...+...+..+|++|+|+|+++.. +.+...++..+... ++| +++++||+|+.+.... ...+...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 888888899999999999998753 22334455544443 566 7899999999752211 1234455666655
Q ss_pred ---CcEEEeccCCC--------CCHHHHHHHHHHHHH
Q 029103 147 ---LSFLETSAKSA--------HNVNELFYEIAKRLA 172 (199)
Q Consensus 147 ---~~~~~~s~~~~--------~~v~~~~~~l~~~~~ 172 (199)
++++++||++| .|+.++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 457778877776554
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.82 E-value=3.3e-21 Score=154.54 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=88.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC---------------------------CcCccceeEEEEEEEeCCeE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF---------------------------QESTIGAAFFTQVLSLNEVT 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 58 (199)
...++|+++|++++|||||+++|+.. .+... .....+.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45799999999999999999999752 11100 00011112211111222234
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCce-EEEEEeCCCCcccc
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNLI-MFLVANKVDLEEKR 131 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 131 (199)
..+.+|||||++.|...+...+..+|++|+|+|+++.. +|+ +....+..... .++| +++++||+|+.+..
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCEEEEEEECccCCCcc
Confidence 67899999999999988888899999999999999762 222 22222222222 3566 89999999995421
Q ss_pred ------cCCHHHHHHHHHHh-------CCcEEEeccCCCCCHHHHH
Q 029103 132 ------KVKNEEGELYAQEN-------GLSFLETSAKSAHNVNELF 164 (199)
Q Consensus 132 ------~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~ 164 (199)
+....+...+.... +++++++|+++|+|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11122345555554 4569999999999998766
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=1.3e-21 Score=156.91 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=104.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEE
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~ 88 (199)
...+|+++|++++|||||+++|.+..+.....+.++.+..... +......+.+|||||++.|..++...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 4678999999999999999999876544332222222221111 22223468899999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc--cCCHH--HHHHHHHHh--CCcEEEeccCCCCCHHH
Q 029103 89 VYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR--KVKNE--EGELYAQEN--GLSFLETSAKSAHNVNE 162 (199)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~s~~~~~~v~~ 162 (199)
|+|+++... .+...++..... .+.|+++++||+|+.+.. .+... +...+...+ .++++++||++|.|+++
T Consensus 81 VVda~~g~~-~qT~e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVM-PQTIEAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSC-TTTHHHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCcc-HHHHHHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 999987321 111222233322 467899999999996421 11100 000111122 26899999999999999
Q ss_pred HHHHHHHH
Q 029103 163 LFYEIAKR 170 (199)
Q Consensus 163 ~~~~l~~~ 170 (199)
+|++|...
T Consensus 157 Lle~I~~~ 164 (501)
T 1zo1_I 157 LLDAILLQ 164 (501)
T ss_dssp HHHHTTTT
T ss_pred hhhhhhhh
Confidence 99998753
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=7.8e-21 Score=152.01 Aligned_cols=153 Identities=12% Similarity=0.169 Sum_probs=101.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC--CCCCC-----------------------C----cCccceeEEEEEEEeCCeE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG--QFFDF-----------------------Q----ESTIGAAFFTQVLSLNEVT 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~--~~~~~-----------------------~----~~~~~~~~~~~~~~~~~~~ 58 (199)
...++|+++|++++|||||+++|++. .+... . ....+++.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46899999999999999999999864 11110 0 0001122211122334445
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---HHH---HHHHHHHHHHHhCCCCc-eEEEEEeCCCCccc-
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---SFE---RAKKWVQELQRQGNPNL-IMFLVANKVDLEEK- 130 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~- 130 (199)
..+.+|||||++.|...+..++..+|++|+|+|+++.. +++ +...++...... +. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccCC
Confidence 67999999999999888888899999999999998753 121 333333333322 44 48999999998731
Q ss_pred -cc--CCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHH
Q 029103 131 -RK--VKNEEGELYAQENG-----LSFLETSAKSAHNVNEL 163 (199)
Q Consensus 131 -~~--~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 163 (199)
.. ....+...+...++ ++++++||++|+|+.++
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 11233445555555 68999999999998754
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-20 Score=154.83 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=101.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-----------------------------CccceeEEEEEEEeCCeE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-----------------------------STIGAAFFTQVLSLNEVT 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 58 (199)
...++|+++|++++|||||+++|++....-... ...+++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999998642211000 001223222223333445
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDS------FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
..+.+|||||++.|...+..++..+|++|+|+|++++.. ..+....+...... ...|+++++||+|+.+..+
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhH
Confidence 688999999999999888889999999999999987421 11222222222222 2345899999999875221
Q ss_pred CC----HHHHHHHHHHh-----CCcEEEeccCCCCCHHHH
Q 029103 133 VK----NEEGELYAQEN-----GLSFLETSAKSAHNVNEL 163 (199)
Q Consensus 133 ~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~ 163 (199)
.. ......+.... +++++++||++|+|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11 12223333333 358999999999999876
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=5.9e-20 Score=132.48 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=96.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----------ccccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----------YHSLAPM 78 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----------~~~~~~~ 78 (199)
...+|+++|++|||||||+++|.+..+.....++.+...........+ .+.+||+||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 467999999999999999999987654333344444443333333322 467999999742 1222223
Q ss_pred cc---cCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHhC--CcE
Q 029103 79 YY---RGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENG--LSF 149 (199)
Q Consensus 79 ~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~ 149 (199)
++ ..++++++++|++++.+.. .+..|+. . .+.|+++++||+|+.+..+. ....+..+....+ +.+
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 33 4688999999998754432 2223322 2 36788999999998653221 1233444444443 567
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHh
Q 029103 150 LETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+++|++++.|+++++++|.+.+.+
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEEeecCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999888754
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=1e-18 Score=137.45 Aligned_cols=161 Identities=17% Similarity=0.138 Sum_probs=109.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc----cccccccc---ccCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER----YHSLAPMY---YRGAA 84 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~----~~~~~~~~---~~~~d 84 (199)
.|+|+|++|||||||+++|++....-...+..+.......+..++ ...+.+||+||... +..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987643211111111122222333333 24678999999743 22232323 35689
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 85 AAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
.+++++|++ ...+..+..+..++.... ....|.++++||.|+... . ............+.+++.+||++++|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999997 555677777776665543 135788999999998754 1 22333444455678999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 029103 163 LFYEIAKRLAEVNP 176 (199)
Q Consensus 163 ~~~~l~~~~~~~~~ 176 (199)
++++|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987653
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=3.3e-20 Score=140.85 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=100.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc----Cccce----------------------eEE-------------
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE----STIGA----------------------AFF------------- 48 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~----~~~~~----------------------~~~------------- 48 (199)
...++|+|+|.+|||||||+|+|++..+.+... ...+. +..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999877642211 01110 000
Q ss_pred ----------EEEEE-eCCeEEEEEEEeCCCcc-------------cccccccccccCCCEEE-EEEECCCHHHHHHHHH
Q 029103 49 ----------TQVLS-LNEVTIKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDITSMDSFERAKK 103 (199)
Q Consensus 49 ----------~~~~~-~~~~~~~v~l~d~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 103 (199)
...+. .......+.+|||||.. .+...+..++..++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000 00112578999999964 23345566788888766 7999987544333233
Q ss_pred HHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH--hC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 029103 104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE--NG-LSFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
++..+ ...+.|+++|+||+|+.+............... .+ .+++++||++|.|++++|++|.+..
T Consensus 184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 44433 235789999999999876443222221110001 12 3578999999999999999988754
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=1.7e-18 Score=129.12 Aligned_cols=120 Identities=16% Similarity=0.123 Sum_probs=81.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccccccccc-----
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYR----- 81 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~----- 81 (199)
...++|+++|.+|+|||||+++|++...... ................. +..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--GFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--CeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3589999999999999999999998764221 11222222233333333 347899999999877665544443
Q ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCcc
Q 029103 82 ----GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPN--LIMFLVANKVDLEE 129 (199)
Q Consensus 82 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~ 129 (199)
.+|++++|+++++.........|+..+......+ .|+++|+||+|+.+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 7899999999876442122246666666543332 48999999999854
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=9.6e-19 Score=145.57 Aligned_cols=117 Identities=18% Similarity=0.111 Sum_probs=82.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC----------------ccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES----------------TIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~ 71 (199)
....+|+|+|+.|+|||||+++|++......... ..++++......+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 3467999999999999999999995332100000 012233333333333457899999999999
Q ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 72 YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
|...+..++..+|++++|+|+++...... ..++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 98888889999999999999876533222 344444444 368899999999986
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=2.2e-20 Score=153.40 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=81.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC---------------------------CcCccceeEEEEEEEeCCeE
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF---------------------------QESTIGAAFFTQVLSLNEVT 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 58 (199)
...++|+++|++++|||||+++|+... .... .....++++......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 457899999999999999999996421 0000 00112333333334444456
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhCCCCce-EEEEEeCCCCcccc
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD---S---FERAKKWVQELQRQGNPNLI-MFLVANKVDLEEKR 131 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 131 (199)
..+.||||||++.|...+...+..+|++|+|+|++++. . ..+....+..+... +.| +++++||+|+.+..
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTC
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccccccc
Confidence 78999999999999998888999999999999998532 1 11222333333332 444 88999999986521
Q ss_pred cCC----HHHHHHHH-HHhCC-----cEEEeccCCCCCHH
Q 029103 132 KVK----NEEGELYA-QENGL-----SFLETSAKSAHNVN 161 (199)
Q Consensus 132 ~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~ 161 (199)
... ..+...+. ...++ +++++||++|+|+.
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 111 12223333 33344 69999999999998
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=1.2e-18 Score=145.37 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=81.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC--C------------cCccceeEEEEEEEeCCeEEEEEEEeCCCcc
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF--Q------------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQE 70 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~ 70 (199)
.....+|+|+|++|+|||||+++|+... +... . ....+.+.......+....+.+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 3568999999999999999999998421 1000 0 0011111111122222235789999999999
Q ss_pred cccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 71 RYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.|...+..++..+|++|+|+|+++.........|.. +.. .+.|+++++||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 998888889999999999999998766655544443 333 3788999999999854
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=1.8e-19 Score=140.29 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcccee---EEE----------E--------------------------
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA---FFT----------Q-------------------------- 50 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~---~~~----------~-------------------------- 50 (199)
-.+|+|+|.+|||||||+++|.+..+.+......+.. ... .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 3499999999999999999999876533322211100 000 0
Q ss_pred -------------EEE-eCCeEEEEEEEeCCCcccc-------------cccccccccCCCEEEEEEECCCHHHHHHHHH
Q 029103 51 -------------VLS-LNEVTIKFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDITSMDSFERAKK 103 (199)
Q Consensus 51 -------------~~~-~~~~~~~v~l~d~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 103 (199)
... .......+.+|||||...+ ..+...++..+|++|+|++..+.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 000 0111235889999998765 345667899999999999876433221 23
Q ss_pred HHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 029103 104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
|+..+......+.|+++|+||+|+.+...........+...++.+|+.+++.++.++++.+..+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 444455544567889999999999765444443344444456788999999998888776554433
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=1.9e-18 Score=129.45 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=80.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccc---------
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM--------- 78 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~--------- 78 (199)
...++|+++|.+|+|||||+|+|++..+... ....+.+.......+......+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3589999999999999999999998765321 112222222222233334567999999998766533221
Q ss_pred cccCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCC--ceEEEEEeCCCCcccc
Q 029103 79 YYRGAAAAVVVYDITSMDSFER-AKKWVQELQRQGNPN--LIMFLVANKVDLEEKR 131 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~ 131 (199)
....+|++++|+|++.. ++.. ...|+..+......+ .|+++|+||+|+....
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 13468999999998653 2322 246666666543333 6899999999986543
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=3.6e-18 Score=142.72 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=104.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCC-CcCccce------------eEE---------------------------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDF-QESTIGA------------AFF--------------------------- 48 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~-~~~~~~~------------~~~--------------------------- 48 (199)
..++|+|+|.+|+|||||+|+|++....+. ..++... +..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 478999999999999999999998664321 1111100 000
Q ss_pred --------------EEEEEeCCeE--EEEEEEeCCCccc---ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q 029103 49 --------------TQVLSLNEVT--IKFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQ 109 (199)
Q Consensus 49 --------------~~~~~~~~~~--~~v~l~d~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (199)
...+...... ..+.+|||||... ....+..++..+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000000000 2588999999765 33455678899999999999988766666555544432
Q ss_pred HhCCCCceEEEEEeCCCCcccccCCHH----------HHHH-----HHHH--------hCCcEEEeccC-----------
Q 029103 110 RQGNPNLIMFLVANKVDLEEKRKVKNE----------EGEL-----YAQE--------NGLSFLETSAK----------- 155 (199)
Q Consensus 110 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~s~~----------- 155 (199)
..+.|+++|+||+|+......+.. .... +... ...+++++|++
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 236679999999998654311110 0111 1111 12469999999
Q ss_pred ---CCCCHHHHHHHHHHHHHh
Q 029103 156 ---SAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 156 ---~~~~v~~~~~~l~~~~~~ 173 (199)
++.|++++++.|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=4.1e-18 Score=138.18 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=79.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-C-------------------CcCccceeEEEEEEEeCCeEEEEEEEeCC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-F-------------------QESTIGAAFFTQVLSLNEVTIKFDIWDTA 67 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~ 67 (199)
....+|+|+|++|+|||||+++|+.....- . .....+.+.......+......+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 357899999999999999999998631100 0 00111122211222333345789999999
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
|+..|...+..++..+|++|+|+|+++.... ....++.... ..+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999988888889999999999999875322 2223333322 35788999999999854
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.3e-17 Score=139.36 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=85.2
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCC--CCCC--C------------cCccceeEEEEEEEeC-------Ce
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--FFDF--Q------------ESTIGAAFFTQVLSLN-------EV 57 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~~~--~------------~~~~~~~~~~~~~~~~-------~~ 57 (199)
|++..+.....+|+|+|+.|+|||||+++|+... +... . ....+.+.......+. +.
T Consensus 1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 80 (704)
T 2rdo_7 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE 80 (704)
T ss_pred CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence 5554445668999999999999999999997531 1110 0 0011222222222222 23
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+.++||||||+..|...+..++..+|++|+|+|+++.........| ..... .+.|+++++||+|+..
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 38899999999999988888899999999999999976544443333 33322 4788999999999854
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=2.9e-18 Score=143.24 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=85.6
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHh--CCCCCCC---cC-----------ccceeEEEEEEEeCCeEEEEEEE
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK--GQFFDFQ---ES-----------TIGAAFFTQVLSLNEVTIKFDIW 64 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~--~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~v~l~ 64 (199)
|++..+.....+|+|+|++|+|||||+++|+. +.+.... .. ..+++.......+......+++|
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li 80 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII 80 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence 67777777789999999999999999999985 2211000 00 01111111112222234679999
Q ss_pred eCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 65 DTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 65 d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
||||+..+...+..++..+|++|+|+|+++..+......|. .+.. .+.|+++++||+|+..
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 99999998888888899999999999999876555544443 3433 3788999999999854
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=1.2e-19 Score=137.76 Aligned_cols=164 Identities=14% Similarity=0.188 Sum_probs=87.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC-CCCCCCc--------CccceeEEEEEEEeCCeEEEEEEEeCCCc-------cc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG-QFFDFQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQ-------ER 71 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~-------~~ 71 (199)
...++|+|+|++|+|||||+++|.+. .+..... ++.............+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 46799999999999999999998875 3332211 11111111122222344568999999997 44
Q ss_pred cccccc-------cccc-------------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 72 YHSLAP-------MYYR-------------GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 72 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
+..+.. .++. .+++++|..+.+. .+++... ...+... ....|+++|+||.|+.+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence 443332 2222 2334555555432 1122221 1222222 3467899999999987543
Q ss_pred cC--CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhhCC
Q 029103 132 KV--KNEEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRLAEVNP 176 (199)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~~~ 176 (199)
+. ...++..++..++++++++||+++ +++++|.++.+.+.+..|
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 32 234667788889999999999999 999999999999977654
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=2.4e-18 Score=131.58 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=70.4
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 029103 59 IKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDITSMDSF-ERAKKWVQELQRQGNPNLIMFLVANK 124 (199)
Q Consensus 59 ~~v~l~d~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (199)
..+.+|||||... +...+..++..+|++++|+|.++.... .....+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999753 334456678999999999997432211 1111222222 2357899999999
Q ss_pred CCCcccccCCHHHHHHHHHHhCCcEEEeccCC------CCCHHHHHHHHHHHHHhh
Q 029103 125 VDLEEKRKVKNEEGELYAQENGLSFLETSAKS------AHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 125 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~v~~~~~~l~~~~~~~ 174 (199)
+|+.+................+..++++++.. +.|+.++++.+.+.+...
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99875443212211110011225677776554 688999999999888764
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=133.00 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=81.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc--------CccceeEEEEEEEeCCeEEEEEEEeCCCcccccc-----
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE--------STIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS----- 74 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~----- 74 (199)
...++|+|+|++|+|||||+++|++..+..... ++.............+....+.+||++|...+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 457899999999999999999999876531111 1111111111112223345789999999764311
Q ss_pred --------------------cccccccCCCEEEEEEECCCH-HHHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCccccc
Q 029103 75 --------------------LAPMYYRGAAAAVVVYDITSM-DSFERA-KKWVQELQRQGNPNLIMFLVANKVDLEEKRK 132 (199)
Q Consensus 75 --------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 132 (199)
+...++..+++.+++|..... .+++.. ..|+..+. .+.|+++|+||+|+.+..+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence 223445555544444443321 223332 25555553 3789999999999876554
Q ss_pred CCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 029103 133 VKN--EEGELYAQENGLSFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
+.. ..+...+..++++++++|+++++++.++|..|...+
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 443 456777778899999999999999999887777654
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=2.9e-18 Score=134.55 Aligned_cols=85 Identities=19% Similarity=0.067 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEE--E-------------------EeCC-eEEEEEEEeCCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQV--L-------------------SLNE-VTIKFDIWDTAG 68 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~v~l~d~~g 68 (199)
++|+|+|.||||||||+|+|.+........+..+.+..... . .+.+ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999986522111111111111111 1 1122 247899999999
Q ss_pred cccc----ccccc---ccccCCCEEEEEEECCCH
Q 029103 69 QERY----HSLAP---MYYRGAAAAVVVYDITSM 95 (199)
Q Consensus 69 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 95 (199)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8532 22222 457899999999999874
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.72 E-value=3.6e-18 Score=129.78 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=106.9
Q ss_pred HHHHHHHhCCCC-CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHH-HHHHHH
Q 029103 25 SLVLRFVKGQFF-DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAK 102 (199)
Q Consensus 25 sL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 102 (199)
+|+.++..+.|. ..+.++++..+. .....++ .+.+||+ +++|..+++.+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 677888878887 777888884443 2222222 6889999 8899999999999999999999999987 678888
Q ss_pred HHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHH
Q 029103 103 KWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENG--LSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 103 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
.|+..+.. .+.|+++|+||+|+.+...+ .+...++..++ ++++++||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887765 47899999999999764432 34566666777 89999999999999999987653
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=5.7e-17 Score=117.75 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCcccee--------------EEEEEEEe----------------CCeEE
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAA--------------FFTQVLSL----------------NEVTI 59 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~~ 59 (199)
..+|+++|.+|||||||+++|...............+ ........ .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 5689999999999999999998753211100000000 00011100 11234
Q ss_pred EEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHH
Q 029103 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGE 139 (199)
Q Consensus 60 ~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 139 (199)
.+.+|||+|..... ..+....+.+++|+|+++... ....+... .+.|+++++||+|+.+..........
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHHH
Confidence 67789988841100 011125688999999876432 11111111 13568999999998754333455555
Q ss_pred HHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 140 LYAQEN--GLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 140 ~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
...... +.+++++|+++|.|++++|++|.+.+...
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 555543 47899999999999999999999887654
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.68 E-value=2.6e-17 Score=127.75 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=70.6
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 137 (199)
.+.+.+|||||.... ....+..+|++++|+|....+....+.. .....|+++|+||+|+.+..... ..
T Consensus 171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LA 238 (355)
T ss_dssp TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HH
Confidence 367889999995432 2234588999999999876543322221 11245789999999986532221 11
Q ss_pred HHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 138 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 138 ~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
...+... ++.+++++||++|+|+++++++|.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222221 25789999999999999999999998865
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.1e-15 Score=118.07 Aligned_cols=85 Identities=18% Similarity=0.075 Sum_probs=54.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc-
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH- 73 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~- 73 (199)
.++|+++|.||||||||+|+|++........+..+.+.....+.+.+. ...+.+||+||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 478999999999999999999986632222211111111112233331 2578999999987653
Q ss_pred ---cccc---ccccCCCEEEEEEECCC
Q 029103 74 ---SLAP---MYYRGAAAAVVVYDITS 94 (199)
Q Consensus 74 ---~~~~---~~~~~~d~~i~v~d~~~ 94 (199)
.+.. .+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2333 34789999999999985
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=2.7e-16 Score=128.10 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=81.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCC------------------CC--CCCcCccceeEEEEEEEeCCeEEEEEEEeCCC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQ------------------FF--DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAG 68 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g 68 (199)
...+|+|+|+.++|||||.++|+... +. ...+...++++......+.+.++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 46899999999999999999996311 00 01112223333333344455567899999999
Q ss_pred cccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 69 QERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
|..|.......++-+|++|+|+|+.+.-..+....| ..... .++|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 999999888899999999999999876444444444 33433 4788999999999743
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.65 E-value=3.1e-18 Score=132.94 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=92.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCc----cceeEE------------------------------------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQEST----IGAAFF------------------------------------ 48 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~----~~~~~~------------------------------------ 48 (199)
...+|+|+|.+|||||||+|+|++..+.+..... .+....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999987764222111 110000
Q ss_pred ---------EEEEE-eCCeEEEEEEEeCCCccc-------------ccccccccccCCC-EEEEEEECCCHHHHHHHHHH
Q 029103 49 ---------TQVLS-LNEVTIKFDIWDTAGQER-------------YHSLAPMYYRGAA-AAVVVYDITSMDSFERAKKW 104 (199)
Q Consensus 49 ---------~~~~~-~~~~~~~v~l~d~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 104 (199)
..... .......+.+|||||... +..+...++...+ ++++|++.+....-. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence 00000 011135689999999642 2334556666665 445566655422111 22
Q ss_pred HHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH--HHHHhC-CcEEEeccCCCCCHHHHHHHHHH
Q 029103 105 VQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL--YAQENG-LSFLETSAKSAHNVNELFYEIAK 169 (199)
Q Consensus 105 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~s~~~~~~v~~~~~~l~~ 169 (199)
...+......+.|+++|+||+|+.+........... +...++ .+++.+||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222333334678999999999987543311111110 000112 24678999999999999998876
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=8.6e-18 Score=122.52 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=90.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEE------------EEEEEeC-Ce------------------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFF------------TQVLSLN-EV------------------ 57 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 57 (199)
...+|+|+|.+|||||||+++|....+......+...+.. .....++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3689999999999999999999986544322222222211 0111111 10
Q ss_pred -EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103 58 -TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (199)
Q Consensus 58 -~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 136 (199)
...+.++|++|.-... ..+-...+..+.++|......... .... + ...|.++++||+|+.+.......
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~-~-----~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPG-I-----MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHH-H-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhh-H-----hhcCCEEEEeccccCchhHHHHH
Confidence 1134555655521100 011122345566777432111100 0001 1 13568999999998765444555
Q ss_pred HHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 137 EGELYAQEN--GLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 137 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+...+.... +.+++++||++|.|++++|++|.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666665554 5789999999999999999999988765
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.62 E-value=1.8e-16 Score=129.17 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=78.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCCC-CCcCccceeEEEEEEEeCC----------------------eE------
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFFD-FQESTIGAAFFTQVLSLNE----------------------VT------ 58 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------~~------ 58 (199)
....+|+|+|.+|+|||||+|+|++..+.. .......++.......-.. .+
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 357899999999999999999999877531 1111111111110000000 00
Q ss_pred -----------EEEEEEeCCCccc-----------ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc
Q 029103 59 -----------IKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL 116 (199)
Q Consensus 59 -----------~~v~l~d~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (199)
..+.+|||||... +...+..++..+|++++|+|+++....+....++..+. ..+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcCC
Confidence 2588999999864 33455667889999999999987544444555655553 3467
Q ss_pred eEEEEEeCCCCcccc
Q 029103 117 IMFLVANKVDLEEKR 131 (199)
Q Consensus 117 p~ivv~nK~D~~~~~ 131 (199)
|+++|+||+|+.+..
T Consensus 220 pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 220 KIRVVLNKADMVETQ 234 (550)
T ss_dssp GEEEEEECGGGSCHH
T ss_pred CEEEEEECCCccCHH
Confidence 899999999987543
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=116.31 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 137 (199)
++.+.++||+|.... .......+|++++|+|.+++...+.+.. .+ -..|.++++||+|+.+.... ...
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 356789999996422 2344678999999999986543222211 11 24577999999998642211 111
Q ss_pred HHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 138 GELYAQ----------ENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 138 ~~~~~~----------~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
...+.. .++.+++.+|+++|+|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 122211 124578999999999999999999987753
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=1.3e-14 Score=121.74 Aligned_cols=124 Identities=22% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHhCC--------CC----------CCCcCccceeEEEEEEEeC-----Ce
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVKGQ--------FF----------DFQESTIGAAFFTQVLSLN-----EV 57 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~-----~~ 57 (199)
|+++.+-..-.+|+|+|+.++|||||.++|+... .. .+....+++......+... ..
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 7877766677899999999999999999987411 00 0111112222222222222 23
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
.+.++|+|||||..|.......++-+|++|+|+|+.+.-..+...-|.. .... ++|.++++||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence 6889999999999999888888999999999999987644444334433 3333 77899999999974
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=1.8e-15 Score=128.86 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=84.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCC--CC----------C----CCcCccce--eEEEEEEE------------eCCe
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQ--FF----------D----FQESTIGA--AFFTQVLS------------LNEV 57 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~--~~----------~----~~~~~~~~--~~~~~~~~------------~~~~ 57 (199)
....+|+|+|++|+|||||+++|+... .. + +..+.+++ ........ .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998741 10 0 00111111 11111121 2344
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+.+++|||||+..|...+..+++.+|++|+|+|++++.+.+....|.... . .+.|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence 789999999999999999999999999999999999876666655554333 2 4788999999999863
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=7.9e-15 Score=113.78 Aligned_cols=154 Identities=21% Similarity=0.167 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCC-------------------eEEEEEEEeCCCccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNE-------------------VTIKFDIWDTAGQER 71 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~v~l~d~~g~~~ 71 (199)
++|+++|.||||||||+++|.+........+..+.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998642211111111111111112221 245789999999876
Q ss_pred cc----cccc---ccccCCCEEEEEEECCCH----------HHHHHHHHHHHH---------------------------
Q 029103 72 YH----SLAP---MYYRGAAAAVVVYDITSM----------DSFERAKKWVQE--------------------------- 107 (199)
Q Consensus 72 ~~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~--------------------------- 107 (199)
.. .+.. ..++.+|++++|+|+++. +.++.+..+..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 53 2222 347899999999999851 112211110000
Q ss_pred ------------HHH-------------------hC-CCCceEEEEEeCCCCc--cc-ccCCHHHHHHHHHHhCCcEEEe
Q 029103 108 ------------LQR-------------------QG-NPNLIMFLVANKVDLE--EK-RKVKNEEGELYAQENGLSFLET 152 (199)
Q Consensus 108 ------------~~~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (199)
+.. .. ....|+++++||.|.. +. ..........++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 00 1347999999999842 21 1223455677778888999999
Q ss_pred ccCCCCCHHHHH
Q 029103 153 SAKSAHNVNELF 164 (199)
Q Consensus 153 s~~~~~~v~~~~ 164 (199)
||+...++.++.
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998755554443
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=9.6e-16 Score=118.33 Aligned_cols=104 Identities=18% Similarity=0.094 Sum_probs=65.2
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH-
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE- 136 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~- 136 (199)
.+.+.+|||||...... .....+|++++|+|.+..+.++.+.. .. .+.|.++|+||+|+.+.......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 45789999999754432 24588999999999876543221111 11 13567999999998653221110
Q ss_pred -HHHHHHHHh-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 137 -EGELYAQEN-------GLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 137 -~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
+........ ..+++++|+++|+|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 356899999999999999999998775
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=3e-14 Score=105.95 Aligned_cols=113 Identities=15% Similarity=0.063 Sum_probs=68.9
Q ss_pred EEEEEEeCCCccccccccc------ccccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 59 IKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDITS---MDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
+.+.+|||||...+..... ..+.. +++++++|... +..+.....+.... ....+.|+++|+||+|+.+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEecccccc
Confidence 5789999999876543221 13355 88888988753 22222221111111 1123678999999999865
Q ss_pred cccCCHHHH---------HH-----------------HHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 130 KRKVKNEEG---------EL-----------------YAQENG--LSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 130 ~~~~~~~~~---------~~-----------------~~~~~~--~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
..+...... .. +...++ .+++++|+++++|+++++++|.+.+...
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 332110000 01 123333 4799999999999999999999887653
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.54 E-value=9.9e-16 Score=127.00 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCC--------------CcCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG--QFFDF--------------QESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS 74 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~ 74 (199)
.||+|+|+.++|||||.++|+.. ..... .+..-+++.......+.+.++.++|+|||||..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47999999999999999998741 11100 011113444444555666778899999999999998
Q ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 75 LAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.....++-+|++|+|+|+.+.-..+.. ..+...... ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence 888899999999999999876333332 333444444 667899999999743
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.8e-13 Score=105.15 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=97.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc-------ccccccC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL-------APMYYRG 82 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~-------~~~~~~~ 82 (199)
..+|+++|.|+||||||+|+|++........+..+.+.....+.+.+ .+++++|+||....... .-..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998664443444445555555555555 46789999997432211 1234678
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcc--------cccCCHHHHHHHHHHhCCcEEEe
Q 029103 83 AAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEE--------KRKVKNEEGELYAQENGLSFLET 152 (199)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 152 (199)
+|++++|+|+++|. .....+..++.... ....|.++++||.|... .......+...+...+.+..-++
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 99999999999873 33333333444332 24667789999999742 22345566666666666544444
Q ss_pred ccCCCCCHHHHHH
Q 029103 153 SAKSAHNVNELFY 165 (199)
Q Consensus 153 s~~~~~~v~~~~~ 165 (199)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 4444455555544
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=4e-14 Score=118.27 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=94.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccc---eeE--------------------------------------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIG---AAF-------------------------------------- 47 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~---~~~-------------------------------------- 47 (199)
...+|+|+|.+++|||||+|+|++..+.+......+ +..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 356999999999999999999998665322111000 000
Q ss_pred ----------EEEEEEeCCeEEEEEEEeCCCcccc-------------cccccccc-cCCCEEEEEEECCCHHHHHHHHH
Q 029103 48 ----------FTQVLSLNEVTIKFDIWDTAGQERY-------------HSLAPMYY-RGAAAAVVVYDITSMDSFERAKK 103 (199)
Q Consensus 48 ----------~~~~~~~~~~~~~v~l~d~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 103 (199)
....+.. .....+.|+||||.... ......++ ..+|++++|+|++.+........
T Consensus 130 g~~~~is~~~i~l~I~~-P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEE-TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEec-CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000101 11224789999996541 11223333 57899999999986432222223
Q ss_pred HHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHH----hC-CcEEEeccCCCCCHHHHHHHHHHH
Q 029103 104 WVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQE----NG-LSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 104 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
++..+ ...+.|+++|+||+|+.+.......... ... .+ .+++.+||++|.|++++++.|.+.
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33333 2457899999999999764433221111 001 12 246889999999999999998873
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=6.7e-14 Score=107.73 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=63.4
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEE 137 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 137 (199)
++.+.++||+|..... ......+|.+++++|....+..+.+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 4578899999975322 1235789999999998654322211111 11 12457777999964322111111
Q ss_pred HHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 029103 138 GELYAQE----------NGLSFLETSAKSAHNVNELFYEIAKRLA 172 (199)
Q Consensus 138 ~~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~l~~~~~ 172 (199)
...+... +..+++.+|++++.|++++++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222221 1457899999999999999999988765
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=4e-13 Score=101.97 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=78.2
Q ss_pred cccccccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHhC
Q 029103 69 QERYHSLAPMYYRGAAAAVVVYDITSMD-SFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENG 146 (199)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 146 (199)
++++..+.+.++.++|++++|+|++++. +++.+.+|+..+.. .++|+++|+||+|+.+...+. ..+...+....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5677778888999999999999999886 78888888887654 578899999999997543222 334455666778
Q ss_pred CcEEEeccCCCCCHHHHHHHHH
Q 029103 147 LSFLETSAKSAHNVNELFYEIA 168 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~~~~~~l~ 168 (199)
.+++++||++|+|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 9999999999999999998753
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=2.7e-13 Score=95.94 Aligned_cols=106 Identities=5% Similarity=-0.112 Sum_probs=68.6
Q ss_pred CCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHH----HHHhC-CCCceEEEEEeCC-CCcccccCCHHHHH
Q 029103 66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQE----LQRQG-NPNLIMFLVANKV-DLEEKRKVKNEEGE 139 (199)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~ 139 (199)
.+|+...+.+|+.|+.++|++|||+|.+|.+.++ .+..+.. +.... ..+.|++|++||. |++.. .+..+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHH
Confidence 3478889999999999999999999999875443 3322222 22221 3688999999995 67542 2333322
Q ss_pred HHHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 140 LYAQ----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 140 ~~~~----~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
+... .+.+.++.|||.+|+|+.+.++||.+.+..+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 2111 2456789999999999999999998877554
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=7.3e-13 Score=103.25 Aligned_cols=87 Identities=9% Similarity=-0.026 Sum_probs=50.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCccccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERYH 73 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~~ 73 (199)
..++|+++|.+|||||||+|+|.+........+..+.+.....+.+.+. ...+.+||+||...+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4689999999999999999999987543322333333333333333332 2358999999987644
Q ss_pred c-------cccccccCCCEEEEEEECCCH
Q 029103 74 S-------LAPMYYRGAAAAVVVYDITSM 95 (199)
Q Consensus 74 ~-------~~~~~~~~~d~~i~v~d~~~~ 95 (199)
. .+..+++.+|++++|+|+++.
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 3 334568999999999999753
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.32 E-value=4.1e-11 Score=93.54 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=57.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCC-CCCCcCccceeEEEEEEEeCCe---------------EEEEEEEeCCCcccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQF-FDFQESTIGAAFFTQVLSLNEV---------------TIKFDIWDTAGQERY 72 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~l~d~~g~~~~ 72 (199)
...+|+++|++|||||||+|+|++... .....+..........+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 367999999999999999999998654 3333333333333334444431 135789999996432
Q ss_pred cc-------cccccccCCCEEEEEEECCC
Q 029103 73 HS-------LAPMYYRGAAAAVVVYDITS 94 (199)
Q Consensus 73 ~~-------~~~~~~~~~d~~i~v~d~~~ 94 (199)
.. .....++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 22344688999999999863
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=93.58 Aligned_cols=107 Identities=5% Similarity=-0.108 Sum_probs=73.3
Q ss_pred CCCcccccccccccccCCCEEEEEEECCCHHHHH---HHHHHHHHHHHhC-CCCceEEEEEeC-CCCcccccCCHHHHHH
Q 029103 66 TAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFE---RAKKWVQELQRQG-NPNLIMFLVANK-VDLEEKRKVKNEEGEL 140 (199)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~ 140 (199)
.+|+.....+|+.|+.++|++|||+|.+|.+.++ ++.++...+.... ..+.|++|++|| .|++.. .+..+..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence 4678888999999999999999999999886543 2222222232221 368899999996 587643 23332222
Q ss_pred HHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHhh
Q 029103 141 YAQ----ENGLSFLETSAKSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 141 ~~~----~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~~ 174 (199)
... .+.+.++.+||.+|+|+.+.++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 111 1456789999999999999999999888654
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.08 E-value=1.6e-11 Score=95.65 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=84.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC----CCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc--------cc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQ----FFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL--------AP 77 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~--------~~ 77 (199)
..+|+++|.+|+|||||+|+|.+.. .........+++.......+... +.++||||....... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3579999999999999999999751 11111222334444444444432 679999996433211 11
Q ss_pred ccc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEeccC
Q 029103 78 MYY--RGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSAK 155 (199)
Q Consensus 78 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (199)
.++ ...+.++++++.........+.. +......+.|+++++||.|..+.... ......+.+..+..+.+.++.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence 111 66789999998742100001100 11112357899999999998765443 444455666677766666665
Q ss_pred CCCCH
Q 029103 156 SAHNV 160 (199)
Q Consensus 156 ~~~~v 160 (199)
+.+++
T Consensus 314 ~~~~~ 318 (369)
T 3ec1_A 314 YAAEF 318 (369)
T ss_dssp GTTTC
T ss_pred hhhhc
Confidence 54443
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=9.9e-12 Score=96.72 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=78.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCC-----CCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccccccc----cc---
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFF-----DFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHSL----AP--- 77 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~~----~~--- 77 (199)
..+|+++|.+|+|||||+|+|.+.... .......+++.......+... +.++||||......+ ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 357999999999999999999985311 112333344444444544433 779999997433211 11
Q ss_pred -cc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103 78 -MY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 78 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
.+ ....+.++++++.........+.. +......+.|+++++||.|..+.... ......+.+..+..+++.++
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 11 356778888888632100011100 11112357899999999998765433 44445556666665555543
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=9.3e-10 Score=86.58 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcC--ccceeEE--EEEEEeCCeEEEEEEEeCCCcccccc-----------
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQES--TIGAAFF--TQVLSLNEVTIKFDIWDTAGQERYHS----------- 74 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~v~l~d~~g~~~~~~----------- 74 (199)
.++++|+|++|+|||||++.|.+..+...... ..+.... ............+.++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 46799999999999999999998643321111 1111111 11122222334688999988532100
Q ss_pred ---cc----cc---------cccCC--CE-EEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCH
Q 029103 75 ---LA----PM---------YYRGA--AA-AVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKN 135 (199)
Q Consensus 75 ---~~----~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 135 (199)
.+ .. ....+ |+ ++++.|...+-+..+ ..++ ... ..+.|+++|.||+|.....+...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieil---k~L-~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTM---KKL-DSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHH---HHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHH---HHH-hhCCCEEEEEcchhccchHHHHH
Confidence 00 00 11122 33 444555543322222 1222 222 36889999999999765433211
Q ss_pred H--HHHHHHHHhCCcEEEecc
Q 029103 136 E--EGELYAQENGLSFLETSA 154 (199)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~s~ 154 (199)
. .........|++++.+|.
T Consensus 197 l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHcCCcEEecCC
Confidence 1 112112245677777774
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=1.8e-09 Score=80.51 Aligned_cols=137 Identities=17% Similarity=0.225 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCC---------cCccceeEEEEEEEeCCeEEEEEEEeCCCcccccc---c--
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ---------ESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERYHS---L-- 75 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~~~---~-- 75 (199)
+++++++|++|+|||||++.|++....... .....................+.++|++|...... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 579999999999999999999984322110 00000001111111112223678999998422100 0
Q ss_pred -----------------------ccccccCCCEEEEEEECC-CH-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCccc
Q 029103 76 -----------------------APMYYRGAAAAVVVYDIT-SM-DSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEK 130 (199)
Q Consensus 76 -----------------------~~~~~~~~d~~i~v~d~~-~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (199)
-...+..+++.++++|.. .+ ...+ ...+..+.. . .+++++++|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---c-CcEEEEEeccccCCH
Confidence 011234467888888854 22 1122 233344432 2 789999999998654
Q ss_pred ccCCH--HHHHHHHHHhCCcEEEe
Q 029103 131 RKVKN--EEGELYAQENGLSFLET 152 (199)
Q Consensus 131 ~~~~~--~~~~~~~~~~~~~~~~~ 152 (199)
.+... .........+++.+|+.
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYPQ 179 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHcCccccCC
Confidence 32211 22233345567776643
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.93 E-value=1.4e-09 Score=84.68 Aligned_cols=97 Identities=26% Similarity=0.302 Sum_probs=72.7
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH----HHHHH
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQ 143 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~ 143 (199)
..++|...++.+.+..+++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.+.. ...... ..++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45778888888899999999999999863 34555555543 478999999999996533 222222 33355
Q ss_pred HhCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 029103 144 ENGL---SFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 144 ~~~~---~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
..+. .++.+||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999987754
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.92 E-value=2.9e-10 Score=91.48 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=83.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHH------hCCCC----CCCcCc-----------cceeEEEEEEE-------------e
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFV------KGQFF----DFQEST-----------IGAAFFTQVLS-------------L 54 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 54 (199)
....|+++|.+||||||+++.|. +.+.. +.+.+. .+++....... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 32210 000000 01111110000 0
Q ss_pred CCeEEEEEEEeCCCcccccc-ccc---cc--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceE-EEEEeCCCC
Q 029103 55 NEVTIKFDIWDTAGQERYHS-LAP---MY--YRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIM-FLVANKVDL 127 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 127 (199)
....+.+.|+||||...... .+. .. +..+|.+++|+|+....... .....+.. ..|+ ++|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence 00345788999999753221 111 11 23789999999998653211 11222222 1454 889999997
Q ss_pred cccccCCHHHHHHHHHHhCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 029103 128 EEKRKVKNEEGELYAQENGLSF------------------LETSAKSAHN-VNELFYEIAKR 170 (199)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~~~~l~~~ 170 (199)
.... .. ........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~--g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKG--GG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCC--TH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccch--HH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 6422 11 122233444443 3468888888 98888888765
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=4.1e-08 Score=77.18 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCCCCCCCc-Ccccee--EEEEEEEeCCeEEEEEEEeCCCcccccccccc-----ccc
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQFFDFQE-STIGAA--FFTQVLSLNEVTIKFDIWDTAGQERYHSLAPM-----YYR 81 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~l~d~~g~~~~~~~~~~-----~~~ 81 (199)
...|+|+|++|||||||+|.|.+........ ...+.. ....... ......+.++|++|.......... -+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999999843221111 000110 0011111 111125789999986422111111 123
Q ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc-------ccccCCHHHH----HHHH----HHhC
Q 029103 82 GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE-------EKRKVKNEEG----ELYA----QENG 146 (199)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~ 146 (199)
..+..++ ++..... .+-..+...+.. .+.|+++|.||.|+. ..+....... ..+. ...+
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3355554 7765211 111122333333 367899999999863 1111122222 2222 1222
Q ss_pred ---CcEEEecc--CCCCCHHHHHHHHHHHHHhh
Q 029103 147 ---LSFLETSA--KSAHNVNELFYEIAKRLAEV 174 (199)
Q Consensus 147 ---~~~~~~s~--~~~~~v~~~~~~l~~~~~~~ 174 (199)
..++.+|+ ..+.|++++.+.|.+.+.+.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 35788999 55667999999998887553
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.76 E-value=3.7e-09 Score=82.26 Aligned_cols=97 Identities=22% Similarity=0.240 Sum_probs=70.6
Q ss_pred CcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHH----HHHHH
Q 029103 68 GQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEG----ELYAQ 143 (199)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~ 143 (199)
.++.|...+..++..++++++|+|++++.+ .|...+.+. ..+.|+++|+||+|+.+... ..... ..+..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRSV-KYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTTC-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCcc-CHHHHHHHHHHHHH
Confidence 467788888888899999999999998763 344444443 24788999999999975322 22222 22345
Q ss_pred HhCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 029103 144 ENGL---SFLETSAKSAHNVNELFYEIAKRL 171 (199)
Q Consensus 144 ~~~~---~~~~~s~~~~~~v~~~~~~l~~~~ 171 (199)
..+. .++.+||++|.|++++++.|.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 689999999999999999987765
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=9.7e-09 Score=77.04 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=69.3
Q ss_pred EeCCCcc-cccccccccccCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHH
Q 029103 64 WDTAGQE-RYHSLAPMYYRGAAAAVVVYDITSMDSFE--RAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGEL 140 (199)
Q Consensus 64 ~d~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 140 (199)
...|||. .........+..+|+++.|+|+.++.+.. .+..|+ .+.|.++++||+|+.+... ......
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKE 73 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHH
Confidence 3568886 33445556788999999999999986653 233332 5788999999999976321 122233
Q ss_pred HHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Q 029103 141 YAQENGLSFLETSAKSAHNVNELFYEIAKRLAE 173 (199)
Q Consensus 141 ~~~~~~~~~~~~s~~~~~~v~~~~~~l~~~~~~ 173 (199)
+....+.+++.+|++++.|++++++.+.+.+..
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 444567899999999999999999988887754
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=2.6e-08 Score=74.68 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=35.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER 71 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~ 71 (199)
..++|+++|.||||||||+|+|.+..... .....+++.......... .+.++||||...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 46899999999999999999999765322 222233333222222222 477999999753
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.58 E-value=1.9e-08 Score=74.65 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCcccc
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQERY 72 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~~ 72 (199)
++|+++|.+|+|||||+|+|.+..... ..+..+++......... ..+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence 599999999999999999999765432 22233333322222222 25789999997643
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.47 E-value=1.8e-07 Score=74.06 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=74.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC------CC----CCCCcC-----------ccceeEEEEEEEe-------------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG------QF----FDFQES-----------TIGAAFFTQVLSL------------- 54 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~------------- 54 (199)
....|+++|++||||||++..|... +. .+.+.+ ..+.+........
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999988741 10 000000 0111111000000
Q ss_pred CCeEEEEEEEeCCCcccccc-----ccc-ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 55 NEVTIKFDIWDTAGQERYHS-----LAP-MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
....+.+.++||+|...... +.. ......|.+++|+|++....... ....+... -.+..||+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCc
Confidence 00125688999999533221 100 11345789999999875432221 22333322 23457999999975
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEecc
Q 029103 129 EKRKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
.. .-.+.......+.|+.+++.
T Consensus 253 ~~----gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 253 AK----GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp SS----HHHHHHHHHTTCCCEEEEEC
T ss_pred cc----ccHHHHHHHHHCCCEEEEEc
Confidence 42 22344445567888877775
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.36 E-value=4.6e-07 Score=74.26 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=39.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhCCCC-CCCcCccceeEEEEE--EEe-CCeEEEEEEEeCCCccc
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKGQFF-DFQESTIGAAFFTQV--LSL-NEVTIKFDIWDTAGQER 71 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~-~~~~~~v~l~d~~g~~~ 71 (199)
...++|+|+|.||+|||||+|+|.+.... .....+.+.+...+. ... ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 35688999999999999999999986531 111111111111111 111 12335688999999754
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.27 E-value=1.5e-07 Score=74.39 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=50.6
Q ss_pred EEEEEEEeCCCccc--ccc-c---ccc--cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcc
Q 029103 58 TIKFDIWDTAGQER--YHS-L---APM--YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEE 129 (199)
Q Consensus 58 ~~~v~l~d~~g~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (199)
.+.+.++||||... ... . ... .....+.+++|+|......... ....+... -.+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence 45677999999643 111 0 010 1224689999999875432222 22333322 234689999999653
Q ss_pred cccCCHHHHHHHHHHhCCcEEEecc
Q 029103 130 KRKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
..-.+.......+.|+.+++.
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred ----cchHHHHHHHHHCCCEEEEEC
Confidence 223344555567899887775
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.27 E-value=2.9e-07 Score=68.27 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=61.0
Q ss_pred CCcccc-cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHHHHHHHHHHh
Q 029103 67 AGQERY-HSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNEEGELYAQEN 145 (199)
Q Consensus 67 ~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 145 (199)
|||... .......+.++|+++.|+|+.+|.+..... +. . . +.|.++++||+|+.+... ......+....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----l-l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD----F-S-RKETIILLNKVDIADEKT--TKKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----C-T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----h-c-CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence 776532 234456688999999999999886553210 01 1 1 788999999999976321 12223344456
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHH
Q 029103 146 GLSFLETSAKSAHNVNELFYEIAKR 170 (199)
Q Consensus 146 ~~~~~~~s~~~~~~v~~~~~~l~~~ 170 (199)
+.++ .+|++++.|++++++.|...
T Consensus 75 g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 7888 99999999999988776543
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=2.5e-06 Score=67.62 Aligned_cols=84 Identities=17% Similarity=0.062 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCcccccc-cc-----cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCcc
Q 029103 58 TIKFDIWDTAGQERYHS-LA-----PMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNL-I-MFLVANKVDLEE 129 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~ 129 (199)
.+.+.++||||...... +. ...+..+|.+++|+|...... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 45688999999653211 10 011236899999999865431 112222221 233 4 789999999753
Q ss_pred cccCCHHHHHHHHHHhCCcEEEe
Q 029103 130 KRKVKNEEGELYAQENGLSFLET 152 (199)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~ 152 (199)
. ...........+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 112333555667776555
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.10 E-value=2.7e-06 Score=70.32 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.|+|+|++|||||||++.+.|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999753
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.10 E-value=1.4e-06 Score=65.88 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=58.9
Q ss_pred ccccccccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccC--CHHHHHHHHHHhCCcEE
Q 029103 74 SLAPMYYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKV--KNEEGELYAQENGLSFL 150 (199)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (199)
.+.+..+.++|.+++|+|+.+|.. ...+.+++.... ..++|.++|+||+|+.+.... ............+.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 444556899999999999987753 333334433332 347788999999999764320 01223344445688999
Q ss_pred EeccCCCCCHHHHHH
Q 029103 151 ETSAKSAHNVNELFY 165 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~ 165 (199)
.+|+.++.|++++++
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998887665543
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.07 E-value=6.8e-06 Score=61.98 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCccc--ccc-ccc-----ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCc
Q 029103 58 TIKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLE 128 (199)
Q Consensus 58 ~~~v~l~d~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 128 (199)
.+.+.++||||... ... +.. .....+|.+++|+|...... .......+.. ..+ ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 35688999999765 211 111 12457899999999864321 1122222222 234 67899999964
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 029103 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNVNE 162 (199)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
.. .-.........+.++..++ .|+++++
T Consensus 253 ~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred cc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 31 2234556667788887776 4555543
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.92 E-value=3.7e-07 Score=73.25 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=57.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCCcCccceeEEEEEEEeCCeEEEEEEEeCCCccc--ccccc--------cc
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEVTIKFDIWDTAGQER--YHSLA--------PM 78 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~d~~g~~~--~~~~~--------~~ 78 (199)
....|+++|.+|+||||+.++|....... ...+.............+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999987642111 011110000000000011112335788888632 22222 45
Q ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Q 029103 79 YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQ 111 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 111 (199)
++....+.++|+|.++. +.+....|+..+...
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 66667888999999886 344445666666554
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.88 E-value=5.7e-05 Score=58.25 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred cccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCC-HHHHHHHHHHhCCcEEEeccCC
Q 029103 79 YYRGAAAAVVVYDITSMDS-FERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVK-NEEGELYAQENGLSFLETSAKS 156 (199)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
...++|.+++|... +|.. ...+.+++..... .++|.++|+||+|+.+..... ...........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988665 4543 2333344433332 366779999999997643210 1112233345688999999999
Q ss_pred CCCHHHHHHH
Q 029103 157 AHNVNELFYE 166 (199)
Q Consensus 157 ~~~v~~~~~~ 166 (199)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999887654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=2.4e-05 Score=62.07 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+-.-|.|+|++++|||+|+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677899999999999999999863
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.78 E-value=1.5e-05 Score=55.46 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2.2e-05 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
--++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.66 E-value=2.7e-05 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 238
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.60 E-value=0.00014 Score=54.97 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 029103 11 VKLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~ 31 (199)
-.++++|++|||||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999998
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.60 E-value=1.8e-05 Score=59.88 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.++++|++|||||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 37899999999999999999864
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.58 E-value=4e-05 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.57 E-value=3.9e-05 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999864
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.57 E-value=4.2e-05 Score=53.49 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 243
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.56 E-value=9.2e-06 Score=56.97 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 244
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.56 E-value=7.6e-05 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.-.|+|+|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.54 E-value=4.9e-05 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++|+|++|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998743
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.54 E-value=5.1e-05 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
--++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999998753
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.51 E-value=5.5e-05 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998743
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=6.2e-05 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..--|+|+|++|||||||++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3446889999999999999999864
No 249
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.50 E-value=0.00033 Score=49.39 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=53.4
Q ss_pred EEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCcccccCCHH
Q 029103 59 IKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG--NPNLIMFLVANKVDLEEKRKVKNE 136 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 136 (199)
+.+.++|+|+.. .......+..+|.+++++..+.. + ..+..++..+.... .++.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 567899999865 23334556779999999987643 3 56666666665543 345677999999995432 122
Q ss_pred HHHHHHHHhCCcEE
Q 029103 137 EGELYAQENGLSFL 150 (199)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (199)
+.......++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 33444444555443
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.50 E-value=7e-05 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.....|+|+|++|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998863
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.46 E-value=7.3e-05 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
--|+|+|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998753
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.46 E-value=7.6e-05 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..|+|+|++|||||||++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.44 E-value=5.9e-05 Score=52.05 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 029103 12 KLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~ 31 (199)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 254
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.41 E-value=0.0001 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.-.|+|+|++|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.41 E-value=7.4e-05 Score=54.35 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998864
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.41 E-value=9.8e-05 Score=50.33 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999854
No 257
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.40 E-value=9.5e-05 Score=51.66 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.40 E-value=9.6e-05 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..-|+|+|++|||||||++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999763
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.40 E-value=9.4e-05 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.38 E-value=0.00011 Score=50.41 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.38 E-value=0.00013 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.36 E-value=0.00012 Score=51.98 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|+|+|+.|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998873
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.36 E-value=0.00011 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.36 E-value=0.00011 Score=56.71 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++++|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 265
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.36 E-value=0.00062 Score=53.96 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=45.1
Q ss_pred EEEEEEEeCCCcccccc-ccc-----ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCccc
Q 029103 58 TIKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLI-MFLVANKVDLEEK 130 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (199)
.+.+.++||||...... +.. ..+...+.+++|+|....... ......+.. ..+ ..+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 45688999999643321 111 123468899999998754222 112222222 122 3578999997432
Q ss_pred ccCCHHHHHHHHHHhCCcEEEe
Q 029103 131 RKVKNEEGELYAQENGLSFLET 152 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~ 152 (199)
. . .+.......+.++..+
T Consensus 256 ~--g--~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G--G--AALSIRHITGKPIKFL 273 (433)
T ss_dssp C--T--HHHHHHHHHCCCEEEE
T ss_pred H--H--HHHHHHHHHCCCeEEE
Confidence 1 1 2334455556664433
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.35 E-value=9.1e-05 Score=53.49 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.34 E-value=0.00013 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00012 Score=50.19 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 029103 11 VKLVLLGDMGTGKTSLVLRF 30 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l 30 (199)
.-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 269
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.33 E-value=0.00014 Score=51.97 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.31 E-value=0.00015 Score=51.59 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+.|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.31 E-value=0.00014 Score=53.14 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 029103 11 VKLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~ 31 (199)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.31 E-value=0.00012 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999864
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.30 E-value=0.00012 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.30 E-value=0.00012 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.30 E-value=0.00015 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.29 E-value=0.00015 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..|+|+|++||||||+++.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 277
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.29 E-value=0.00023 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366789999999999999875
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.29 E-value=0.00012 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00018 Score=50.74 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999875
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.27 E-value=0.00013 Score=54.13 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999874
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.27 E-value=0.00013 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 282
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.27 E-value=0.00017 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999864
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.26 E-value=0.00016 Score=52.90 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 284
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.26 E-value=0.00018 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999986
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.26 E-value=0.00014 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999999864
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.26 E-value=0.00017 Score=53.36 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|++|||||||++.+.+-
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999873
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.25 E-value=0.00016 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.25 E-value=0.00015 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.00019 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998874
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.25 E-value=0.00017 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.25 E-value=0.00018 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.|+|+|++|+|||||++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998763
No 292
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=0.0002 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|+|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.25 E-value=0.00013 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.25 E-value=0.00015 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.24 E-value=0.00017 Score=54.65 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....-|+|+|++|||||||++.|.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44667899999999999999998873
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.00017 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=0.00016 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 298
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.23 E-value=0.00021 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.23 E-value=0.00016 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999864
No 300
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00026 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.22 E-value=0.00026 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=22.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999875
No 302
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.22 E-value=0.00019 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.22 E-value=0.00023 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.21 E-value=0.00019 Score=53.02 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999864
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.20 E-value=0.00024 Score=49.46 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00026 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 307
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.20 E-value=0.00018 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.20 E-value=0.00035 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.....|+++|.+|+||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999875
No 309
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=0.00016 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-.++++|++|+|||||+|.|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998643
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.19 E-value=0.0003 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999863
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.18 E-value=0.00021 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999864
No 312
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.18 E-value=0.00019 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.18 E-value=0.00013 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=14.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC
Q 029103 12 KLVLLGDMGTGKTSLVLRFV-KG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~-~~ 33 (199)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 64
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.18 E-value=0.00025 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-++|+|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 315
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.17 E-value=0.00024 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 316
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.17 E-value=0.0003 Score=51.33 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..+.|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999874
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.16 E-value=0.0002 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999864
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.16 E-value=0.00039 Score=52.86 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
....+-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999865
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.16 E-value=0.00028 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 320
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.16 E-value=0.00029 Score=48.94 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.16 E-value=0.00023 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00033 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998764
No 323
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.16 E-value=0.00049 Score=48.99 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=53.9
Q ss_pred EEEEEEEeCCCc-ccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccccCCHH
Q 029103 58 TIKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKRKVKNE 136 (199)
Q Consensus 58 ~~~v~l~d~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 136 (199)
.+.+.++|+|+. .. ......+..+|.+|+++..+ ..++..+...++.+.... +.++.+++|+.|..... ...
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence 356789999876 32 23345667899999999754 566777777777776532 45578999999864301 123
Q ss_pred HHHHHHHHhCCcEE
Q 029103 137 EGELYAQENGLSFL 150 (199)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (199)
+........+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 33344444565443
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00033 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 325
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.15 E-value=0.00037 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
....-|+|.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999975
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.14 E-value=0.00034 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 327
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.13 E-value=0.0083 Score=45.09 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=54.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCceEE-EEEeCCCCcccccCCH
Q 029103 58 TIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQG-NPNLIMF-LVANKVDLEEKRKVKN 135 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i-vv~nK~D~~~~~~~~~ 135 (199)
.+.+.++|+|+..... .....+..+|.+|+|+.. +..++..+..++..+.... ..+.+++ +|+|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 3567899998743221 123456789999999975 4566777777777776542 3455654 899999832
Q ss_pred HHHHHHHHHhCCcEEE
Q 029103 136 EEGELYAQENGLSFLE 151 (199)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (199)
.....+....+.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 2345555666766543
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.13 E-value=0.00027 Score=51.40 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-++|+|++|+|||||++.+.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999883
No 329
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.12 E-value=0.00032 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 330
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.12 E-value=0.00027 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.11 E-value=0.00035 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00015 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|+|++|+|||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 333
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.00027 Score=48.67 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.10 E-value=0.00027 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999874
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.10 E-value=0.00034 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|++.|++|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.09 E-value=0.00039 Score=50.74 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999876
No 337
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.09 E-value=0.00046 Score=51.79 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.....|+|+|++|||||||++.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998765
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.09 E-value=0.00052 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 339
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.08 E-value=0.00032 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999863
No 340
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.00036 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 341
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.08 E-value=0.00035 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 7 KNIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 7 ~~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
......|+++|+|||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34467899999999999999999875
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.07 E-value=0.00045 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 343
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.07 E-value=0.00021 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999998863
No 344
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.0003 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998743
No 345
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.06 E-value=0.00033 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++|+|+.|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3689999999999999999874
No 346
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.00024 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 347
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.04 E-value=0.00038 Score=51.16 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
No 348
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00035 Score=53.93 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999863
No 349
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.04 E-value=0.00035 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++|+|+.|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999999874
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.03 E-value=0.00043 Score=49.76 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.02 E-value=0.00037 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999999874
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.01 E-value=0.00051 Score=51.95 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|+|+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998863
No 353
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.01 E-value=0.00055 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
....|+|+|++|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999875
No 354
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.01 E-value=0.00035 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999864
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.01 E-value=0.00039 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3689999999999999999874
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.00042 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 357
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.0005 Score=48.42 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 358
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.00 E-value=0.00041 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++++|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3689999999999999999874
No 359
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00045 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+.|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.98 E-value=0.00037 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 361
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.98 E-value=0.00042 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999998743
No 362
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.98 E-value=0.00043 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++|+|+.|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999999874
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.98 E-value=0.00053 Score=47.81 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00048 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 365
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.97 E-value=0.00059 Score=47.97 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|+|.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999998864
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.96 E-value=0.00047 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.-.|+|+|++|||||||++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 44789999999999999999886
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.0007 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.94 E-value=0.00056 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 369
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.0011 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.93 E-value=0.00056 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 371
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.93 E-value=0.00059 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+++|++|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999886
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.93 E-value=0.00063 Score=49.82 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.92 E-value=0.00035 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++++|+.|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4689999999999999999874
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.92 E-value=0.00045 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.++|+|++|+|||||++.|.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999864
No 375
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.92 E-value=0.00061 Score=46.64 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.92 E-value=0.00058 Score=47.77 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.92 E-value=0.00056 Score=53.16 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+|+|++|+|||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 378
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.00068 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
No 379
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.90 E-value=0.00061 Score=47.23 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.90 E-value=0.00077 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+++|.+|+||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 381
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.00059 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 382
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.90 E-value=0.00065 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|++.|++|+|||++++.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999998754
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00058 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.--++++|+.||||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999887
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.90 E-value=0.0004 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 385
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.90 E-value=0.00079 Score=50.77 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=21.7
Q ss_pred CCCCCCCceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 1 MARTSNKNIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
|..+.+.....-|+|+|++|||||+|...|..
T Consensus 1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 1 MSDISKASLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp ------CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccccCCCCcEEEEECCCccCHHHHHHHHHH
Confidence 44433334455688999999999999999975
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00023 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.90 E-value=0.00065 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 029103 11 VKLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~ 31 (199)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 388
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.90 E-value=0.00042 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|++|+|||||++.|.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.88 E-value=0.00059 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.00074 Score=48.83 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+|+|++||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 391
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.88 E-value=0.00062 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.|+++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00078 Score=45.98 Aligned_cols=21 Identities=48% Similarity=0.672 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.86 E-value=0.0006 Score=53.77 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-|+|+|+.|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.86 E-value=0.00064 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998764
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.84 E-value=0.00091 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 396
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.83 E-value=0.00061 Score=53.23 Aligned_cols=21 Identities=38% Similarity=0.800 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.++|+|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999999987
No 397
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.82 E-value=0.00074 Score=48.39 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998854
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.82 E-value=0.00035 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998743
No 399
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.79 E-value=0.001 Score=50.71 Aligned_cols=140 Identities=13% Similarity=0.092 Sum_probs=73.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhCCCCCCC--------c-------------CccceeEEEEEEEe-------------
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKGQFFDFQ--------E-------------STIGAAFFTQVLSL------------- 54 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~~~~~~~--------~-------------~~~~~~~~~~~~~~------------- 54 (199)
..--|+++|++|+||||+++.|.+....... . ...+..+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3567899999999999999998872110000 0 00010010000000
Q ss_pred CCeEEEEEEEeCCCccccccc-ccc-----cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCc
Q 029103 55 NEVTIKFDIWDTAGQERYHSL-APM-----YYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLE 128 (199)
Q Consensus 55 ~~~~~~v~l~d~~g~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (199)
......+.++|++|....... ... ..-..|-.++++|..... ........+..... ..++++||.|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCc
Confidence 001123557899996432211 110 122468889999976442 22233333332211 237889999953
Q ss_pred ccccCCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 029103 129 EKRKVKNEEGELYAQENGLSFLETSAKSAHNV 160 (199)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.. .-.........+.|+..++ +|+++
T Consensus 282 a~----~G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 282 AR----GGAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp SC----CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred cc----hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence 21 2224455667788888777 55554
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.79 E-value=0.00094 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..+.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 401
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.79 E-value=0.00057 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++|+|+.|||||||++.|.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999753
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.78 E-value=0.00083 Score=46.44 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999875
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.77 E-value=0.00069 Score=54.84 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.|+|+|++|||||||++.|++-.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998643
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.76 E-value=0.0012 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..+.|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999874
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00093 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-.|+|+|++|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 406
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.74 E-value=0.0013 Score=46.27 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...+.|+|.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3478899999999999999999875
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.74 E-value=0.00083 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988743
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00081 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|+|+.|+|||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999874
No 409
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.73 E-value=0.0011 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...|++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999999763
No 410
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.71 E-value=0.00083 Score=46.23 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.71 E-value=0.00098 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.-.|+++|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44689999999999999999887
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.69 E-value=0.0016 Score=47.08 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998753
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.68 E-value=0.0014 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|+++|++|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 414
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.0012 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998753
No 415
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.66 E-value=0.0011 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.--|+|+|+.|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999999887
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.66 E-value=0.0011 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-.|+++|++|+|||||++.|.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 417
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.65 E-value=0.0013 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998764
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.65 E-value=0.0012 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-++|+|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.65 E-value=0.0014 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.65 E-value=0.0012 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
+++|+|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 421
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.65 E-value=0.0012 Score=46.92 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-++++|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 422
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.61 E-value=0.0018 Score=48.57 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..+..+++.|+||+|||+|++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567888899999999999998864
No 423
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.58 E-value=0.0013 Score=52.74 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999988
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.58 E-value=0.0015 Score=43.86 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 029103 13 LVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+|+|+.|+|||||++++.-
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999763
No 425
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.56 E-value=0.0065 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHH
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~ 31 (199)
++-.-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 456677799999999999999654
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.55 E-value=0.0017 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999875
No 427
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.54 E-value=0.0018 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...++.+|+|+|||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998875
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0015 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++++|+.|+|||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999743
No 429
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.53 E-value=0.0018 Score=43.20 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhCC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
...|++.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999987643
No 430
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.49 E-value=0.0014 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988875
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.48 E-value=0.0018 Score=48.38 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.|++.|+||+|||+|++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999863
No 432
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.48 E-value=0.0017 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 433
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.47 E-value=0.0022 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=21.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.....+++.|+||+|||+|++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999987664
No 434
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0019 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.+++.|+||+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999753
No 435
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.45 E-value=0.0015 Score=53.81 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999864
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0017 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57999999999999999999743
No 437
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.44 E-value=0.0019 Score=46.18 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0023 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
....|+|+|++|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0015 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-++++|+.|+|||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.43 E-value=0.0023 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...|++.|+||+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.42 E-value=0.0023 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.41 E-value=0.0018 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 443
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.40 E-value=0.003 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999998764
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.40 E-value=0.0019 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999754
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.39 E-value=0.0019 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999886
No 446
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.39 E-value=0.0032 Score=46.46 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 8 NIQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 8 ~~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44678999999999999999998764
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.39 E-value=0.0023 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.|++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 446899999999999999999864
No 448
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.36 E-value=0.0021 Score=49.78 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 029103 13 LVLLGDMGTGKTSLVLRFV 31 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~ 31 (199)
.+|+|+.|+|||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999987
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.32 E-value=0.0021 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999998743
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.0034 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
...+|+++|++|+||||+.+.|.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999998776
No 451
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.31 E-value=0.0024 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998763
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.30 E-value=0.0034 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..-|+|+|++||||||+.+.|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.27 E-value=0.0016 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.27 E-value=0.0027 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.26 E-value=0.0022 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.|.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0027 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
No 457
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.25 E-value=0.0017 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998863
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.24 E-value=0.0025 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 459
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.21 E-value=0.0028 Score=47.67 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCcccccc-cc---ccccc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCcccc
Q 029103 58 TIKFDIWDTAGQERYHS-LA---PMYYR--GAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVDLEEKR 131 (199)
Q Consensus 58 ~~~v~l~d~~g~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (199)
.+.+.++||+|...... .. ...+. ..+.+++|+|.+.. ...+..+...+.. -+ ..-+++||.|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~- 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS- 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc-
Confidence 34688999999654321 11 11222 35678889987632 2333333222211 11 23567799997532
Q ss_pred cCCHHHHHHHHHHhCCcEEEec
Q 029103 132 KVKNEEGELYAQENGLSFLETS 153 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.-.+.......+.++..++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2244555667777765544
No 460
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.21 E-value=0.00043 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
++|+|+.|+|||||++.+.+-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3678999999999999998743
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0023 Score=48.97 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+++.|++|+|||||++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998873
No 462
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.19 E-value=0.0028 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998863
No 463
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0029 Score=52.27 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
++|+|+.|+|||||++.|.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 464
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.17 E-value=0.0033 Score=47.08 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...+++.|+||+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.17 E-value=0.0015 Score=53.72 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5799999999999999988763
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.16 E-value=0.0034 Score=47.41 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=46.6
Q ss_pred EEEEEEeCCCcccccc-c-------cc----ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 029103 59 IKFDIWDTAGQERYHS-L-------AP----MYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLIMFLVANKVD 126 (199)
Q Consensus 59 ~~v~l~d~~g~~~~~~-~-------~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 126 (199)
+.+.++|+||...... + .. ......+.+++|+|.+.. .+.+.. ...+... .+ ...+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VN-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SC-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CC-CCEEEEeCCC
Confidence 3578999999532211 0 00 111347888999998633 222221 1222222 11 2367789999
Q ss_pred CcccccCCHHHHHHHHHHhCCcEEEecc
Q 029103 127 LEEKRKVKNEEGELYAQENGLSFLETSA 154 (199)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
.... .-.+.......+.|+.++..
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEeC
Confidence 6432 12256666777888777654
No 467
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0038 Score=49.40 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+.-.|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 468
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0039 Score=49.27 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+.-.|++.||||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999863
No 469
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0033 Score=48.02 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.12 E-value=0.0032 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQ 34 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~ 34 (199)
-+.|+|++|+|||||+..+.+..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998753
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.12 E-value=0.0038 Score=48.28 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 472
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.0035 Score=45.28 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 029103 12 KLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~ 32 (199)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877764
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.11 E-value=0.0048 Score=46.81 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|++.|+||+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999999999753
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.0039 Score=47.41 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.|++.|+||+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999864
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=0.0021 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998763
No 476
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.06 E-value=0.004 Score=43.20 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
|+|+|.+|||||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998743
No 477
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0044 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+.-.|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999864
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.06 E-value=0.0041 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-|+|+||+|||||||...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999753
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.06 E-value=0.0041 Score=42.78 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..-|++.|++|+|||||.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456899999999999999998864
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.03 E-value=0.0027 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
..-.|+|+|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999998864
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.02 E-value=0.0046 Score=46.70 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988753
No 482
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.02 E-value=0.0041 Score=47.48 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.-|+|+|++|+|||||...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999885
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.00 E-value=0.0046 Score=43.74 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 029103 13 LVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+|+|+.|+|||||++++.-
T Consensus 26 ~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 47889999999999998753
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0043 Score=47.37 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 029103 13 LVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 13 i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+++.|++|+|||++++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 485
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.98 E-value=0.0027 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHh
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
....|+|.|.+||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.97 E-value=0.0019 Score=47.49 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998863
No 487
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.96 E-value=0.0042 Score=50.71 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.++++|+||+|||||++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998763
No 488
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.92 E-value=0.0045 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.|+++|++|+|||+|++.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 489
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.91 E-value=0.0046 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-+++++|+||+|||+|++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 490
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0049 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+.-.|++.||||+|||+|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999863
No 491
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.90 E-value=0.0042 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999998753
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.90 E-value=0.005 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
-.+++.|+||+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0061 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
.-|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998753
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0049 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 029103 11 VKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 11 ~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
+.|+|.|++|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998875
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.86 E-value=0.0053 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
+-.|+++|+||+|||+|++.+.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999863
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.85 E-value=0.0026 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=17.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVK 32 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~ 32 (199)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998865
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.84 E-value=0.0062 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 029103 12 KLVLLGDMGTGKTSLVLRFVKGQF 35 (199)
Q Consensus 12 ~i~v~G~~~~GKSsL~~~l~~~~~ 35 (199)
.++|+|+.|+|||||++.|.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999997644
No 498
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.84 E-value=0.0055 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 10 QVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 10 ~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
...|++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999754
No 499
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.82 E-value=0.0068 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|++.|+||+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.81 E-value=0.0063 Score=46.90 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHHhC
Q 029103 9 IQVKLVLLGDMGTGKTSLVLRFVKG 33 (199)
Q Consensus 9 ~~~~i~v~G~~~~GKSsL~~~l~~~ 33 (199)
....|++.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999753
Done!