BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029105
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN + G + EA+ ++ AL L P NA + GD A++ +A EL+ +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
AEAW LG A G+ D+AIE +++AL + P++ EA+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AEAW LG A G+ D+AIE +++AL + P++ EA
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN + G + EA+ ++ AL L P NA + GD A++ +A EL +
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
AEAW LG A G+ D+AIE +++AL + P++ EA+ + A
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AEAW LG A G+ D+AIE +++AL + P++ EA
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 45
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN + G + EA+ ++ AL L P +A + GD A++ +A EL+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AEAW LG A G+ D+AIE +++AL + P S EA
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN + G + EA+ ++ AL L P +A + GD A++ +A EL+
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
AEAW LG A G+ D+AIE +++AL + P S
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AEAW LG A G+ D+AIE +++AL + P S EA
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 53.1 bits (126), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 60 FEAQGNNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
F A +NLA + GK +EAL ++ A+ + P A + L E+ D AL+ T
Sbjct: 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101
Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
RA ++ ++A+A L + G +AI S+ AL +KPD +A
Sbjct: 102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 65 NNLA----EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120
NNLA E G EA+ + AL + PE A H A VL + G AL A +
Sbjct: 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164
++A+A+ +G + A++ + RA+ I P +A +
Sbjct: 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN + G +++A+ ++ AL L P NA + GD A++ +A EL+ +
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
A+AW G A G+ KAIE +++AL + P++ +A+
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAK 114
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN + G +++A+ ++ AL L P NA ++ + GD A++ +A EL+ +
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 124 WAEAWITLGRAQ 135
A+A LG A+
Sbjct: 110 NAKAKQNLGNAK 121
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
+GN + G + A+ + A+ PENA+L+ +A L +L + AL L+
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78
Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163
+ + +I + E KA ++E AL + P +EEAR+
Sbjct: 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
QGN L K+ EA + A+ P AV + +A L++ AL RA EL+
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
+A LG+ QL D+AI + +RA ++
Sbjct: 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%)
Query: 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
+ Q N+ + + A+ + A+ L P NA+ + ++ L AL ATRA E
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
L++ + + + + + G+ A+ +E + +KP ++A+ Q
Sbjct: 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%)
Query: 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
+ Q N+ + + A+ + A+ L P NA+ + ++ L AL ATRA E
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIE 83
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
L++ + + + + + G+ A+ +E + +KP ++A+
Sbjct: 84 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 126
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
GD A++ +A EL+ + AEAW LG A G+ D+AIE +++AL + P++ EA+
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AEAW LG A G+ D+AIE +++AL + P++ EA
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
QGN L K+ EA + A+ P AV + +A L++ AL RA EL+
Sbjct: 15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74
Query: 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
+A LG+ QL D+AI + +RA ++
Sbjct: 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 57/109 (52%)
Query: 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
+ +GN + F A+ + A+ L P NAV +A +LG+ A++ RA
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
++ ++++A+ +G A + + +A+ +++AL + PD+E + + + A
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%)
Query: 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
+ Q N+ + + A+ + A+ L P NA+ + ++ L AL ATRA E
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
L++ + + + + + G+ A+ +E + +KP ++A+
Sbjct: 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
A+ A RA L +A+A+ LG + GE DKAIE++E+ ++IKP
Sbjct: 92 AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
G F A+ ++ L P N + + +++G +A+++ + L+ + AEA+
Sbjct: 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI 78
Query: 131 LGRAQLNFGEPDKAIESFERALAI 154
LG A E AI++ +RA+A+
Sbjct: 79 LGSANFMIDEKQAAIDALQRAIAL 102
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
GD A++A + + + + E + LG+ ++ G P+ AIES ++ + + S EA
Sbjct: 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115
LAL + +GN + G + +A+ + A+ P++A L+ +A +L + ALK
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166
+LE ++ + + A + KA++ +++AL + +EA D Q
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN L E F A+ + AL+L P +AV+H A V E G A+ RA EL+
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156
+ +A+ L A G +A + + AL + P
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123
GN L G+ EA + A+ +P AV V G+ W A+ +A L+ +
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
+ +A+I LG D+A+ ++ RAL++ P+
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%)
Query: 67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126
L G A+ + +AL P+ + +L LG A +A E + ++A
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
Query: 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AW LG GE AI FE+A+ + P+ +A
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 37/125 (29%)
Query: 43 DNNEHQEPFDAKQ---LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ 99
D + H KQ LA ++ GN E G+ +EA+ + AL L+P+
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------- 99
Query: 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159
+ + +I L A + G+ + A++++ AL PD
Sbjct: 100 ------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135
Query: 160 EARDD 164
R D
Sbjct: 136 CVRSD 140
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA-ATRATELEQSWA 125
A ++RE AAL + P +A LH VL L + +++ A RA EL A
Sbjct: 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLG-VLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 126 EAWITLGRAQLNFGEPDKAIESFERALAIKP 156
+ W LG N P +A++++ RAL I P
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINP 237
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA-ATRATELEQSWA 125
A ++RE AAL + P +A LH VL L + +++ A RA EL A
Sbjct: 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLG-VLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 126 EAWITLGRAQLNFGEPDKAIESFERALAIKP 156
+ W LG N P +A++++ RAL I P
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINP 237
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 7 KNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNN 66
KNK ++ P D E G+ LE N + +P L + F
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLE-GVKELYLEAAHQNGDMIDPDLQTGLGVLFHL---- 225
Query: 67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126
G+F A+ + AAL +RPE+ L + L + A++A TRA E++ +
Sbjct: 226 ---SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282
Query: 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
+ LG + +N G +A+ +F AL+++ S
Sbjct: 283 SRYNLGISCINLGAYREAVSNFLTALSLQRKS 314
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
QGN+L + G +REA+ ++ + +P+N V + KA L++LG+ A++ +
Sbjct: 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 123 SWAEAWI-------------TLGRAQLNFGEPDKAIESFERA 151
+ I +G Q+ E D+ E ++R+
Sbjct: 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
GD A++ +A EL+ AEAW LG A G+ D+AIE +++AL + P S
Sbjct: 17 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
AEAW LG A G+ D+AIE +++AL + P S EA
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 39
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
G++ +A+ + AAL++RP + +L + L + A+ A RA EL+ + +
Sbjct: 182 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 241
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
LG + +N G +A+E F AL ++ S R
Sbjct: 242 LGISCINLGAHREAVEHFLEALNMQRKSRGPR 273
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
L+ GD NA+ A + + EAW LG Q + AI + R L +KPD++ A
Sbjct: 26 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 85
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
G++ +A+ + AAL++RP + +L + L + A+ A RA EL+ + +
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
LG + +N G +A+E F AL ++ S R
Sbjct: 251 LGISCINLGAHREAVEHFLEALNMQRKSRGPR 282
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
L+ GD NA+ A + + EAW LG Q + AI + R L +KPD++ A
Sbjct: 35 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 94
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
G++ +A+ + AAL++RP + +L + L + A+ A RA EL+ + +
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
LG + +N G +A+E F AL ++ S R
Sbjct: 251 LGISCINLGAHREAVEHFLEALNMQRKSRGPR 282
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
L+ GD NA+ A + + EAW LG Q + AI + R L +KPD++ A
Sbjct: 35 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 94
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
G++ +A+ + AAL++RP + +L + L + A+ A RA EL+ + +
Sbjct: 231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
LG + +N G +A+E F AL ++ S R
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
L+ GD NA+ A + + EAW LG Q + AI + R L +KPD++ A
Sbjct: 75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130
G++ +A+ + AAL++RP + +L + L + A+ A RA EL+ + +
Sbjct: 168 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 227
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164
LG + +N G +A+E F AL ++ S R +
Sbjct: 228 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 261
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161
L+ GD NA+ A + + EAW LG Q + AI + R L +KPD++ A
Sbjct: 12 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 71
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114
+ AL+ + +GN + K+ +A+ + AL L+ E+ V + + + +GD ++ +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMS 62
Query: 115 TRATELEQSWAEAWITLGRAQLNFG 139
T+A EL+ +++ + L RA N G
Sbjct: 63 TKALELKPDYSK--VLLRRASANEG 85
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 46/93 (49%)
Query: 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119
+++GN ++ +A+ + AL++ P N + +A G A + A AT
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERAL 152
++ +++AW LG A+ + + A E++E+ +
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRP-----ENAVLHEQKAQVL----LELG 105
Q A + +GN + + EA+ K++ AL+ ++ +L ++K + L L
Sbjct: 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 106 DAWN-------ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
+N A+ A++ +++++ +A LG A + FG ++A E+ +A ++ P++
Sbjct: 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155
Query: 159 EEARDDRQTA 168
+ R+ +
Sbjct: 156 LDIRNSYELC 165
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
A+ + +GN+ F EA+ ++ A+ L P V + + + GD ++ T+
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 117 ATELEQSWAEAWITLGRAQLNFG 139
A E++ ++A + A + G
Sbjct: 85 ALEIKPDHSKALLRRASANESLG 107
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
A+K A EL+ + + + ++ G+ +K IE +AL IKPD +A R +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149
A+K T+A EL+ +A I L + +L + D+AIE FE
Sbjct: 447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
A+ + +GN+ F EA+ ++ A+ L P V + + + GD ++ T+
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 117 ATELEQSWAEAWITLGRAQLNFG 139
A E++ ++A + A + G
Sbjct: 81 ALEIKPDHSKALLRRASANESLG 103
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168
A+K A EL+ + + + ++ G+ +K IE +AL IKPD +A R +A
Sbjct: 40 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 98
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149
A+K T+A EL+ +A I L + +L + D+AIE FE
Sbjct: 443 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 482
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%)
Query: 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116
A ++ GN ++EA +E AL EN L VL++L AL R
Sbjct: 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150
Query: 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESF 148
A EL ++ EA G N G D+A+ F
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQF 182
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
+GN G +AL + A+ L P N VL+ ++ + GD A + + +L+
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69
Query: 123 SWAEAW 128
W + +
Sbjct: 70 DWGKGY 75
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA 125
G+F EA+ ++ AL LRP +H A ++G AL +A EL++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDERSA 178
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPD 157
LG A N G D+AI+SF+ AL ++P+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160
AW+ DKA ESF +AL+IKPDS E
Sbjct: 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE 77
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 101 LLELGDAWNALKAATRATELEQSWA-EAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158
L+ GD NAL+A + E EA+ +G A G+ KA+ +++ A+ + PDS
Sbjct: 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
>pdb|3HOS|A Chain A, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOS|B Chain B, Crystal Structure Of The Mariner Mos1 Paired End Complex
With Mg
pdb|3HOT|A Chain A, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
pdb|3HOT|B Chain B, Crystal Structure Of The Mos1 Mariner Paired End Complex
With Mn
Length = 345
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 14 RSLQQFPNLPFDQQDQEHG-----LSGAELEK--NDDNNEHQEPFDAKQLALSFEAQGNN 66
R Q+F + FD D+EHG AEL+ ++D+ + Q+ A+QL +S +A N
Sbjct: 48 RWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDAQTQKQL-AEQLEVSQQAVSNR 106
Query: 67 LAEDGKFREALGKW 80
L E GK + +G+W
Sbjct: 107 LREMGKI-QKVGRW 119
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 48 QEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107
++PF A L + L E K E ++L P N V L +G
Sbjct: 51 KDPFHASCLPVHI----GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLXVGHK 106
Query: 108 -WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA 151
+A + ++AT LE+++ AWI G + E D+A ++ A
Sbjct: 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAXAAYFTA 151
>pdb|3PAS|A Chain A, Crystal Structure Of A Tetr Family Transcription Regulator
(Maqu_1417) From Marinobacter Aquaeolei Vt8 At 1.90 A
Resolution
pdb|3PAS|B Chain B, Crystal Structure Of A Tetr Family Transcription Regulator
(Maqu_1417) From Marinobacter Aquaeolei Vt8 At 1.90 A
Resolution
pdb|3PAS|C Chain C, Crystal Structure Of A Tetr Family Transcription Regulator
(Maqu_1417) From Marinobacter Aquaeolei Vt8 At 1.90 A
Resolution
pdb|3PAS|D Chain D, Crystal Structure Of A Tetr Family Transcription Regulator
(Maqu_1417) From Marinobacter Aquaeolei Vt8 At 1.90 A
Resolution
Length = 195
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-AVLHEQKAQVLL-------- 102
D+K++A EA +A+ G ++GK A L P + +E K Q+LL
Sbjct: 7 DSKRIAF-LEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSD 65
Query: 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162
++ DA AL + +R +L + W TL R L E + E+F + P+ +AR
Sbjct: 66 QVIDA--ALDSFSRGKDLREGLRRQWHTLFRIGLERPELFRYHETFTHSAWXTPEI-QAR 122
Query: 163 DDRQTA 168
++ + A
Sbjct: 123 NESRAA 128
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL--- 120
GN+ + F AL ++ A L P N +A V E GD + +A E+
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 121 ----EQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153
+ A+A+ +G + + AI + ++LA
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL--- 120
GN+ + F AL ++ A L P N +A V E GD + +A E+
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 121 ----EQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153
+ A+A+ +G + + AI + ++LA
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
G L G+F EA+ ++ AL LRP +H A ++G AL +A EL++
Sbjct: 117 GVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPD 157
LG A N G D+AI+SF+ AL ++P+
Sbjct: 116 LGVALKNLGRFDEAIDSFKIALGLRPN 142
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
G+F EA+ ++ AL LRP +H A ++G AL +A EL++
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPD 157
LG A N G D+AI+SF+ AL ++P+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122
G+F EA+ ++ AL LRP +H A ++G AL +A EL++
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 131 LGRAQLNFGEPDKAIESFERALAIKPD 157
LG A N G D+AI+SF+ AL ++P+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|1B93|A Chain A, Methylglyoxal Synthase From Escherichia Coli
pdb|1B93|B Chain B, Methylglyoxal Synthase From Escherichia Coli
pdb|1B93|C Chain C, Methylglyoxal Synthase From Escherichia Coli
pdb|1EGH|A Chain A, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|B Chain B, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|C Chain C, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|D Chain D, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|E Chain E, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|F Chain F, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1IK4|A Chain A, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|B Chain B, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|C Chain C, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|D Chain D, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|E Chain E, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|F Chain F, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
Length = 152
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRAT 118
Q L +GK + W+ P NAV H+ + LL L WN A AT
Sbjct: 73 QVGALISEGKIDVLIFFWD------PLNAVPHDPDVKALLRLATVWNIPVATNVAT 122
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 98 AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
A L+L + A++ +A L+ + + G AQL E + A FE+ L + P
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 158 SEEAR 162
++ AR
Sbjct: 384 NKAAR 388
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 98 AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
A L+L + A++ +A L+ + + G AQL E + A FE+ L + P
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 158 SEEAR 162
++ AR
Sbjct: 384 NKAAR 388
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL--- 120
GN+ + F AL ++ A L P N +A V E GD + +A E+
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 121 ----EQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153
+ A A+ +G + + AI + ++LA
Sbjct: 71 NREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLA 107
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 27.3 bits (59), Expect = 5.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 97 KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI 145
+ LL GD AL + +TEL E+W L R + E +KA+
Sbjct: 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
AQG G LG + A+ + HEQ+ + E GD KAA R
Sbjct: 183 AQGRAFGNLGNTHYLLGNFRDAV-------IAHEQRLLIAKEFGD-----KAAER----- 225
Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
A+ LG A + GE + A E +++ L +
Sbjct: 226 ----RAYSNLGNAYIFLGEFETASEYYKKTLLL 254
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121
AQG G LG + A+ + HEQ+ + E GD KAA R
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAV-------IAHEQRLLIAKEFGD-----KAAER----- 223
Query: 122 QSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154
A+ LG A + GE + A E +++ L +
Sbjct: 224 ----RAYSNLGNAYIFLGEFETASEYYKKTLLL 252
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 69 EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128
E G F G WE A+L E A+ L DAW+ + ++ A AEAW
Sbjct: 441 ELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAA------AEAW 494
Query: 129 ITLGRAQLNFGEPDKAIE 146
T + P K +E
Sbjct: 495 KTRTAVAMYDMTPLKRLE 512
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 69 EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128
E G F G WE A+L E A+ L DAW+ + ++ A AEAW
Sbjct: 438 ELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAA------AEAW 491
Query: 129 ITLGRAQLNFGEPDKAIE 146
T + P K +E
Sbjct: 492 KTRTAVAMYDMTPLKRLE 509
>pdb|3UJZ|A Chain A, Crystal Structure Of Enterohemorrhagic E. Coli Stce
Length = 869
Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 4 TWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQ 63
TW + G+KKR + PN Q +++ L NN+ QEPFD + A
Sbjct: 446 TWGWD-GDKKRFI---PNFYPSQTNEKSCL----------NNQCQEPFDGHKFGFDAXAG 491
Query: 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110
G+ + +F A + EN + + ++ WNA
Sbjct: 492 GSPFSAANRFTXYTPNSSAIIQRFFENKAVFDSRSSTGFS---KWNA 535
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157
NAL + E+ WA W LG A D AI++ + L + +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD---AWNALKAATR---ATELEQSW 124
G +AL + A + P A LH Q+ V LG+ A +LK A E+ +
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157
Query: 125 AEAWITLGRAQLNFGEPDKAIE 146
AE ++++GR + KA+E
Sbjct: 158 AELYLSMGRLDEALAQYAKALE 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,805,855
Number of Sequences: 62578
Number of extensions: 217808
Number of successful extensions: 575
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 115
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)