Query 029105
Match_columns 199
No_of_seqs 385 out of 1369
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 07:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 3.8E-24 8.3E-29 161.2 9.4 172 14-187 311-484 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 5.5E-24 1.2E-28 160.4 10.1 166 16-183 245-412 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-21 3.2E-26 155.1 15.0 159 29-187 335-495 (615)
4 KOG1126 DNA-binding cell divis 99.9 4.4E-22 9.5E-27 150.6 7.5 160 26-185 354-549 (638)
5 PRK15359 type III secretion sy 99.9 3.3E-20 7.1E-25 120.8 14.6 114 60-173 27-140 (144)
6 KOG1155 Anaphase-promoting com 99.9 1.6E-20 3.4E-25 137.3 13.9 165 30-194 335-501 (559)
7 COG3063 PilF Tfp pilus assembl 99.9 1.8E-20 4E-25 125.8 12.1 152 29-180 39-194 (250)
8 KOG1126 DNA-binding cell divis 99.9 1.3E-20 2.8E-25 142.8 12.4 169 13-183 445-615 (638)
9 KOG0553 TPR repeat-containing 99.8 6.3E-20 1.4E-24 127.8 14.0 122 55-176 79-200 (304)
10 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-19 2.4E-24 144.5 15.2 149 39-187 308-461 (615)
11 TIGR02521 type_IV_pilW type IV 99.8 3.7E-19 8E-24 124.8 15.2 160 26-185 32-195 (234)
12 KOG1125 TPR repeat-containing 99.8 9.8E-20 2.1E-24 136.2 11.7 165 27-191 287-530 (579)
13 PRK09782 bacteriophage N4 rece 99.8 4.4E-19 9.4E-24 145.2 16.0 160 28-188 545-706 (987)
14 PRK12370 invasion protein regu 99.8 4.3E-19 9.4E-24 139.2 14.8 146 39-184 318-466 (553)
15 PRK15174 Vi polysaccharide exp 99.8 7.2E-19 1.6E-23 140.1 13.9 157 31-187 218-380 (656)
16 KOG1155 Anaphase-promoting com 99.8 2.1E-19 4.5E-24 131.5 9.8 167 19-187 258-460 (559)
17 PRK12370 invasion protein regu 99.8 1.1E-18 2.5E-23 136.8 13.5 147 39-185 275-432 (553)
18 PRK11189 lipoprotein NlpI; Pro 99.8 2.1E-18 4.7E-23 125.4 13.1 156 29-185 68-262 (296)
19 PRK09782 bacteriophage N4 rece 99.8 3.9E-18 8.5E-23 139.7 15.4 150 33-183 584-735 (987)
20 PRK11189 lipoprotein NlpI; Pro 99.8 7.8E-18 1.7E-22 122.4 15.4 130 52-182 59-188 (296)
21 PRK15363 pathogenicity island 99.8 1.1E-17 2.4E-22 107.6 14.0 105 54-158 32-136 (157)
22 PF13429 TPR_15: Tetratricopep 99.8 8.4E-19 1.8E-23 126.9 9.8 156 32-187 117-276 (280)
23 PRK10370 formate-dependent nit 99.8 6.6E-18 1.4E-22 115.6 13.4 122 39-160 53-179 (198)
24 TIGR03302 OM_YfiO outer membra 99.8 7.2E-18 1.6E-22 119.1 13.5 156 26-181 34-225 (235)
25 TIGR02521 type_IV_pilW type IV 99.8 1.8E-17 3.9E-22 116.2 15.5 155 27-181 67-225 (234)
26 TIGR02552 LcrH_SycD type III s 99.8 3.5E-17 7.6E-22 105.8 14.6 114 52-165 12-125 (135)
27 PRK15174 Vi polysaccharide exp 99.8 2.1E-17 4.5E-22 131.9 15.4 153 34-186 186-345 (656)
28 TIGR02917 PEP_TPR_lipo putativ 99.8 1.9E-17 4.1E-22 136.3 15.0 152 30-182 741-894 (899)
29 COG3063 PilF Tfp pilus assembl 99.8 2.8E-17 6E-22 110.7 12.8 134 55-188 33-168 (250)
30 PRK15179 Vi polysaccharide bio 99.8 2E-17 4.2E-22 131.1 14.1 137 52-188 81-217 (694)
31 PRK15359 type III secretion sy 99.8 5.9E-18 1.3E-22 110.2 8.6 119 15-138 19-139 (144)
32 PLN03088 SGT1, suppressor of 99.8 8.3E-17 1.8E-21 119.6 15.5 115 60-174 5-119 (356)
33 PRK11788 tetratricopeptide rep 99.7 6.4E-17 1.4E-21 122.3 14.1 151 30-180 112-270 (389)
34 PRK10370 formate-dependent nit 99.7 5.2E-17 1.1E-21 111.1 12.0 119 70-188 52-173 (198)
35 PRK11447 cellulose synthase su 99.7 8.7E-17 1.9E-21 135.7 15.2 153 30-182 356-552 (1157)
36 TIGR02917 PEP_TPR_lipo putativ 99.7 2.5E-16 5.5E-21 129.7 17.5 152 31-182 96-250 (899)
37 PRK11447 cellulose synthase su 99.7 8.1E-17 1.7E-21 135.9 14.7 150 30-180 274-439 (1157)
38 COG5010 TadD Flp pilus assembl 99.7 3.2E-16 6.8E-21 107.6 14.7 155 29-183 70-226 (257)
39 PRK11788 tetratricopeptide rep 99.7 2.7E-16 6E-21 118.9 15.4 159 28-186 72-241 (389)
40 KOG0548 Molecular co-chaperone 99.7 2.5E-16 5.4E-21 117.3 13.1 142 31-172 304-473 (539)
41 KOG0547 Translocase of outer m 99.7 1.6E-16 3.4E-21 117.4 11.1 155 32-186 333-489 (606)
42 PRK10049 pgaA outer membrane p 99.7 5.5E-16 1.2E-20 125.9 15.1 151 31-182 21-173 (765)
43 KOG0547 Translocase of outer m 99.7 4E-16 8.6E-21 115.3 12.9 155 29-183 398-561 (606)
44 PLN02789 farnesyltranstransfer 99.7 1.3E-15 2.9E-20 111.0 13.9 139 34-172 46-189 (320)
45 PRK15179 Vi polysaccharide bio 99.7 1.5E-15 3.2E-20 120.7 13.9 135 27-161 88-224 (694)
46 KOG0543 FKBP-type peptidyl-pro 99.7 2.5E-15 5.4E-20 109.1 13.9 133 56-188 207-354 (397)
47 TIGR02552 LcrH_SycD type III s 99.7 1.1E-15 2.3E-20 98.9 10.9 111 78-188 4-114 (135)
48 COG2956 Predicted N-acetylgluc 99.7 2.1E-15 4.6E-20 106.3 12.9 174 14-187 93-277 (389)
49 PRK15363 pathogenicity island 99.7 1.6E-15 3.5E-20 97.6 10.6 107 83-189 26-133 (157)
50 KOG1129 TPR repeat-containing 99.7 1.3E-16 2.8E-21 112.8 5.9 155 30-184 295-454 (478)
51 KOG2076 RNA polymerase III tra 99.7 6.1E-15 1.3E-19 115.7 14.9 155 26-180 140-301 (895)
52 KOG1125 TPR repeat-containing 99.7 8.3E-16 1.8E-20 115.5 9.4 127 55-181 428-564 (579)
53 KOG1173 Anaphase-promoting com 99.7 1.5E-15 3.3E-20 113.9 10.8 172 14-187 303-517 (611)
54 PRK10049 pgaA outer membrane p 99.6 5.3E-15 1.2E-19 120.3 14.7 154 31-184 278-452 (765)
55 PF13429 TPR_15: Tetratricopep 99.6 1.4E-15 3E-20 110.1 9.6 152 36-187 88-242 (280)
56 TIGR03302 OM_YfiO outer membra 99.6 3.9E-15 8.4E-20 105.2 11.5 133 54-186 30-193 (235)
57 PLN02789 farnesyltranstransfer 99.6 5.4E-15 1.2E-19 107.9 12.2 143 29-171 75-229 (320)
58 COG5010 TadD Flp pilus assembl 99.6 7.3E-15 1.6E-19 100.9 12.0 135 52-187 62-196 (257)
59 KOG0553 TPR repeat-containing 99.6 1.6E-15 3.5E-20 106.0 8.4 125 29-153 85-214 (304)
60 TIGR02795 tol_pal_ybgF tol-pal 99.6 2.3E-14 5.1E-19 90.4 12.8 107 57-163 2-114 (119)
61 KOG0550 Molecular chaperone (D 99.6 3.8E-15 8.3E-20 108.1 10.1 158 31-188 175-350 (486)
62 COG4783 Putative Zn-dependent 99.6 3.1E-14 6.7E-19 105.5 14.1 139 53-194 302-440 (484)
63 KOG3060 Uncharacterized conser 99.6 4.6E-14 9.9E-19 96.6 13.2 142 31-172 92-238 (289)
64 KOG1129 TPR repeat-containing 99.6 3.9E-15 8.4E-20 105.5 7.8 157 29-185 227-384 (478)
65 PRK02603 photosystem I assembl 99.6 1.2E-13 2.6E-18 92.9 14.3 107 52-158 30-153 (172)
66 KOG1840 Kinesin light chain [C 99.6 3.6E-14 7.8E-19 108.3 13.0 166 26-191 200-399 (508)
67 PF13414 TPR_11: TPR repeat; P 99.6 1.1E-14 2.4E-19 82.9 7.7 67 90-156 2-69 (69)
68 PRK15331 chaperone protein Sic 99.6 1.1E-13 2.4E-18 89.6 13.0 111 52-163 32-142 (165)
69 cd00189 TPR Tetratricopeptide 99.6 5.9E-14 1.3E-18 84.5 11.2 99 59-157 2-100 (100)
70 KOG2076 RNA polymerase III tra 99.6 1.2E-13 2.6E-18 108.6 15.0 133 56-188 138-270 (895)
71 KOG1173 Anaphase-promoting com 99.6 4.5E-14 9.7E-19 106.1 11.0 156 30-186 284-441 (611)
72 PF13414 TPR_11: TPR repeat; P 99.6 2.3E-14 4.9E-19 81.7 7.3 67 56-122 2-69 (69)
73 CHL00033 ycf3 photosystem I as 99.6 4.7E-13 1E-17 89.7 14.8 108 52-159 30-154 (168)
74 KOG1840 Kinesin light chain [C 99.6 9.9E-14 2.2E-18 105.9 12.7 160 30-189 246-439 (508)
75 PF12895 Apc3: Anaphase-promot 99.6 3.8E-14 8.2E-19 83.9 8.0 81 70-151 2-84 (84)
76 KOG2002 TPR-containing nuclear 99.6 1.8E-14 3.8E-19 114.0 8.5 172 4-175 579-766 (1018)
77 KOG2003 TPR repeat-containing 99.5 2E-13 4.4E-18 100.9 13.1 154 29-182 528-683 (840)
78 KOG3060 Uncharacterized conser 99.5 3.5E-13 7.5E-18 92.3 13.3 145 33-177 60-206 (289)
79 PRK14574 hmsH outer membrane p 99.5 8.5E-14 1.8E-18 112.6 12.0 155 27-182 36-192 (822)
80 PLN03088 SGT1, suppressor of 99.5 5.6E-14 1.2E-18 104.6 10.0 109 30-138 7-117 (356)
81 KOG0624 dsRNA-activated protei 99.5 3.5E-13 7.5E-18 96.3 13.1 155 26-180 39-210 (504)
82 KOG0548 Molecular co-chaperone 99.5 1.6E-13 3.5E-18 102.6 11.3 111 60-170 5-115 (539)
83 cd05804 StaR_like StaR_like; a 99.5 2.6E-13 5.5E-18 101.6 12.1 156 29-185 47-212 (355)
84 KOG2002 TPR-containing nuclear 99.5 4.7E-14 1E-18 111.7 8.2 162 27-188 498-709 (1018)
85 COG4783 Putative Zn-dependent 99.5 6.1E-13 1.3E-17 98.7 13.4 144 29-172 310-455 (484)
86 COG4235 Cytochrome c biogenesi 99.5 8.1E-13 1.8E-17 93.1 13.4 111 52-162 151-264 (287)
87 PF13432 TPR_16: Tetratricopep 99.5 1.4E-13 3.1E-18 77.3 7.7 62 97-158 3-64 (65)
88 KOG4162 Predicted calmodulin-b 99.5 2.6E-13 5.6E-18 105.3 11.4 131 57-187 650-782 (799)
89 KOG0550 Molecular chaperone (D 99.5 4.3E-13 9.3E-18 97.7 11.7 142 29-171 207-366 (486)
90 PF13432 TPR_16: Tetratricopep 99.5 2.5E-13 5.5E-18 76.3 8.3 65 61-125 1-65 (65)
91 cd05804 StaR_like StaR_like; a 99.5 8.4E-13 1.8E-17 98.8 13.2 160 26-186 7-175 (355)
92 PRK14574 hmsH outer membrane p 99.5 9.6E-13 2.1E-17 106.6 14.3 165 15-182 60-226 (822)
93 KOG2003 TPR repeat-containing 99.5 8.5E-13 1.8E-17 97.7 11.7 148 30-177 495-644 (840)
94 KOG4162 Predicted calmodulin-b 99.5 1.1E-12 2.4E-17 101.9 12.5 130 31-160 656-789 (799)
95 KOG1174 Anaphase-promoting com 99.5 1.2E-12 2.7E-17 95.5 11.8 153 29-181 236-390 (564)
96 PF04733 Coatomer_E: Coatomer 99.5 2.2E-12 4.9E-17 93.2 13.1 152 30-184 107-260 (290)
97 PRK10803 tol-pal system protei 99.5 4.8E-12 1E-16 90.0 14.3 106 57-162 142-254 (263)
98 PF13525 YfiO: Outer membrane 99.5 4.3E-12 9.4E-17 87.5 13.7 153 27-179 7-198 (203)
99 KOG4234 TPR repeat-containing 99.5 4.2E-12 9E-17 84.4 12.7 117 56-172 94-215 (271)
100 PRK14720 transcript cleavage f 99.5 1.4E-12 3.1E-17 105.1 12.5 142 52-196 26-186 (906)
101 KOG0624 dsRNA-activated protei 99.5 3.2E-12 6.9E-17 91.5 12.7 118 52-169 33-153 (504)
102 KOG4648 Uncharacterized conser 99.4 9.4E-13 2E-17 94.2 9.6 111 60-170 100-210 (536)
103 PRK10866 outer membrane biogen 99.4 1.7E-11 3.6E-16 86.6 15.1 156 26-181 33-234 (243)
104 PRK10747 putative protoheme IX 99.4 5.9E-12 1.3E-16 95.5 13.6 82 105-187 308-389 (398)
105 KOG1156 N-terminal acetyltrans 99.4 2.4E-12 5.1E-17 98.4 10.6 149 32-180 14-164 (700)
106 PF09976 TPR_21: Tetratricopep 99.4 3.7E-11 7.9E-16 78.6 14.6 122 62-184 16-143 (145)
107 PF09976 TPR_21: Tetratricopep 99.4 1.1E-11 2.3E-16 81.0 12.1 116 36-152 22-145 (145)
108 CHL00033 ycf3 photosystem I as 99.4 5.7E-12 1.2E-16 84.4 11.0 116 68-183 10-137 (168)
109 COG2956 Predicted N-acetylgluc 99.4 8.5E-12 1.9E-16 88.5 12.1 157 29-185 73-240 (389)
110 KOG1128 Uncharacterized conser 99.4 1E-12 2.2E-17 101.6 8.2 133 57-189 485-617 (777)
111 KOG1128 Uncharacterized conser 99.4 6.1E-12 1.3E-16 97.4 11.4 158 22-186 395-580 (777)
112 cd00189 TPR Tetratricopeptide 99.4 9.4E-12 2E-16 74.7 10.1 93 93-185 2-94 (100)
113 TIGR00540 hemY_coli hemY prote 99.4 1.1E-11 2.5E-16 94.3 12.6 139 55-194 261-405 (409)
114 COG4235 Cytochrome c biogenesi 99.4 2.5E-11 5.5E-16 85.6 13.0 108 73-180 138-248 (287)
115 KOG0543 FKBP-type peptidyl-pro 99.4 1E-11 2.3E-16 90.6 11.0 128 29-156 212-357 (397)
116 PF14559 TPR_19: Tetratricopep 99.4 7.8E-12 1.7E-16 70.9 7.9 66 68-133 2-67 (68)
117 PRK10153 DNA-binding transcrip 99.4 2.2E-11 4.8E-16 94.5 12.7 134 26-160 340-488 (517)
118 PRK10747 putative protoheme IX 99.3 3.5E-11 7.7E-16 91.3 13.4 127 29-155 88-217 (398)
119 PRK02603 photosystem I assembl 99.3 1.6E-11 3.5E-16 82.6 10.3 110 27-139 37-165 (172)
120 KOG0495 HAT repeat protein [RN 99.3 1.7E-11 3.7E-16 94.2 11.4 157 35-191 628-785 (913)
121 PF12688 TPR_5: Tetratrico pep 99.3 6.3E-11 1.4E-15 74.0 12.1 96 58-153 2-103 (120)
122 PF12569 NARP1: NMDA receptor- 99.3 1.2E-10 2.7E-15 90.0 15.5 153 30-182 9-251 (517)
123 PF14559 TPR_19: Tetratricopep 99.3 7.1E-12 1.5E-16 71.0 6.6 68 101-168 1-68 (68)
124 TIGR02795 tol_pal_ybgF tol-pal 99.3 5E-11 1.1E-15 75.1 10.8 97 91-187 2-104 (119)
125 PF12895 Apc3: Anaphase-promot 99.3 4.3E-12 9.2E-17 75.1 5.5 79 103-182 1-81 (84)
126 PF13371 TPR_9: Tetratricopept 99.3 1.8E-11 4E-16 70.3 8.0 65 99-163 3-67 (73)
127 PRK11906 transcriptional regul 99.3 1.1E-10 2.5E-15 87.1 13.4 159 29-187 259-435 (458)
128 PF13371 TPR_9: Tetratricopept 99.3 2.3E-11 5E-16 69.9 7.8 71 63-133 1-71 (73)
129 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 1.8E-10 3.8E-15 86.1 14.2 118 62-182 174-291 (395)
130 KOG1127 TPR repeat-containing 99.3 2.5E-11 5.5E-16 97.0 10.0 153 29-181 496-652 (1238)
131 COG1729 Uncharacterized protei 99.3 2.3E-10 4.9E-15 80.0 13.5 107 58-164 142-254 (262)
132 PF13512 TPR_18: Tetratricopep 99.3 1.8E-10 3.9E-15 73.3 11.6 106 56-161 9-135 (142)
133 PRK15331 chaperone protein Sic 99.3 3.6E-11 7.7E-16 78.1 8.4 105 83-187 29-133 (165)
134 TIGR00540 hemY_coli hemY prote 99.3 6E-10 1.3E-14 85.0 16.5 124 32-155 91-217 (409)
135 KOG1174 Anaphase-promoting com 99.3 1.7E-10 3.7E-15 84.6 12.4 148 31-179 340-491 (564)
136 PRK10153 DNA-binding transcrip 99.3 2.9E-10 6.3E-15 88.3 14.0 132 56-188 338-482 (517)
137 KOG1156 N-terminal acetyltrans 99.3 1.3E-10 2.9E-15 89.1 11.8 126 57-182 7-132 (700)
138 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 1.2E-10 2.6E-15 87.0 11.3 116 35-151 179-294 (395)
139 PF06552 TOM20_plant: Plant sp 99.2 1.8E-10 3.9E-15 75.5 10.5 105 73-177 7-132 (186)
140 COG4785 NlpI Lipoprotein NlpI, 99.2 1.9E-10 4.2E-15 77.6 10.4 109 52-160 60-168 (297)
141 PRK10866 outer membrane biogen 99.2 1.3E-09 2.8E-14 77.0 14.4 105 55-159 30-158 (243)
142 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 1.1E-10 2.5E-15 87.0 9.2 70 52-121 70-142 (453)
143 KOG1127 TPR repeat-containing 99.2 1.6E-10 3.5E-15 92.5 9.4 147 40-186 473-623 (1238)
144 PF04733 Coatomer_E: Coatomer 99.2 9.8E-10 2.1E-14 79.6 12.7 130 32-161 138-272 (290)
145 PRK11906 transcriptional regul 99.2 8.5E-10 1.8E-14 82.6 12.0 129 59-187 257-400 (458)
146 PF12688 TPR_5: Tetratrico pep 99.2 8.2E-10 1.8E-14 69.1 10.0 95 92-186 2-102 (120)
147 PF13525 YfiO: Outer membrane 99.2 3.5E-09 7.5E-14 73.1 14.2 104 56-159 4-124 (203)
148 KOG4555 TPR repeat-containing 99.2 4.3E-09 9.4E-14 65.4 12.9 103 57-159 43-149 (175)
149 PF13424 TPR_12: Tetratricopep 99.2 1.5E-10 3.3E-15 67.4 6.2 64 91-154 5-75 (78)
150 PRK14720 transcript cleavage f 99.1 2.5E-10 5.5E-15 92.5 9.2 123 29-154 35-178 (906)
151 KOG4642 Chaperone-dependent E3 99.1 4.5E-10 9.7E-15 76.7 8.4 98 57-154 10-107 (284)
152 PRK10803 tol-pal system protei 99.1 1.1E-09 2.3E-14 78.1 10.8 103 26-128 143-254 (263)
153 KOG0495 HAT repeat protein [RN 99.1 2.8E-09 6E-14 82.5 13.2 124 54-178 615-738 (913)
154 COG4700 Uncharacterized protei 99.1 8.6E-09 1.9E-13 68.1 13.3 124 57-181 89-215 (251)
155 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 1.1E-09 2.5E-14 81.8 10.3 71 85-155 69-142 (453)
156 COG4105 ComL DNA uptake lipopr 99.1 1.3E-08 2.8E-13 70.7 14.7 156 26-181 35-226 (254)
157 PF14938 SNAP: Soluble NSF att 99.1 1.9E-09 4.1E-14 78.2 11.2 152 31-183 41-220 (282)
158 PF13512 TPR_18: Tetratricopep 99.1 9.6E-10 2.1E-14 70.0 8.4 102 26-127 11-135 (142)
159 PF13424 TPR_12: Tetratricopep 99.1 4.4E-10 9.5E-15 65.4 6.4 69 53-121 1-76 (78)
160 KOG3785 Uncharacterized conser 99.1 5.5E-09 1.2E-13 75.6 13.0 143 35-177 32-203 (557)
161 KOG4340 Uncharacterized conser 99.0 2.6E-09 5.7E-14 75.6 9.7 154 35-188 20-207 (459)
162 KOG4234 TPR repeat-containing 99.0 2.2E-09 4.8E-14 71.6 8.8 103 31-133 101-210 (271)
163 KOG0376 Serine-threonine phosp 99.0 7E-10 1.5E-14 82.8 6.9 116 59-174 6-121 (476)
164 KOG1130 Predicted G-alpha GTPa 99.0 2.1E-10 4.5E-15 84.2 4.1 155 28-182 98-298 (639)
165 PF12569 NARP1: NMDA receptor- 99.0 3.9E-08 8.4E-13 76.4 15.4 128 57-184 194-330 (517)
166 COG4785 NlpI Lipoprotein NlpI, 99.0 4.5E-09 9.8E-14 71.1 8.8 154 29-183 69-261 (297)
167 KOG2376 Signal recognition par 99.0 2.1E-08 4.6E-13 76.7 12.5 164 14-182 37-247 (652)
168 COG1729 Uncharacterized protei 99.0 6.7E-09 1.5E-13 72.7 9.0 105 26-130 142-254 (262)
169 KOG1130 Predicted G-alpha GTPa 98.9 1.7E-09 3.7E-14 79.6 5.6 141 56-196 194-352 (639)
170 COG4700 Uncharacterized protei 98.9 2.4E-08 5.1E-13 66.1 10.3 130 22-152 86-220 (251)
171 KOG0545 Aryl-hydrocarbon recep 98.9 5.4E-08 1.2E-12 67.1 12.3 106 56-161 177-300 (329)
172 PLN03218 maturation of RBCL 1; 98.9 7.7E-08 1.7E-12 80.7 15.7 148 33-182 587-742 (1060)
173 PLN03081 pentatricopeptide (PP 98.9 1.7E-08 3.7E-13 82.2 11.6 149 31-182 366-551 (697)
174 COG3071 HemY Uncharacterized e 98.9 9.8E-08 2.1E-12 69.9 13.9 154 32-186 160-388 (400)
175 KOG3081 Vesicle coat complex C 98.9 1.3E-07 2.8E-12 65.9 13.7 148 32-184 115-266 (299)
176 KOG4648 Uncharacterized conser 98.9 3.9E-09 8.5E-14 76.0 6.3 104 29-132 101-206 (536)
177 PLN03081 pentatricopeptide (PP 98.9 2.3E-08 5E-13 81.4 11.5 144 32-180 266-412 (697)
178 KOG0551 Hsp90 co-chaperone CNS 98.9 2.4E-08 5.1E-13 71.6 9.8 104 55-158 79-186 (390)
179 KOG2376 Signal recognition par 98.9 4.4E-08 9.6E-13 75.0 11.2 149 33-185 20-201 (652)
180 PLN03218 maturation of RBCL 1; 98.9 1.6E-07 3.5E-12 78.9 15.6 93 59-152 544-641 (1060)
181 PF14938 SNAP: Soluble NSF att 98.9 3.8E-08 8.2E-13 71.5 10.5 122 37-158 86-229 (282)
182 PF13428 TPR_14: Tetratricopep 98.8 8.7E-09 1.9E-13 52.8 4.8 42 126-167 2-43 (44)
183 PLN03077 Protein ECB2; Provisi 98.8 6.6E-08 1.4E-12 80.5 12.3 145 35-182 564-714 (857)
184 KOG4555 TPR repeat-containing 98.8 6.5E-08 1.4E-12 60.3 8.3 93 94-186 46-142 (175)
185 KOG4340 Uncharacterized conser 98.8 7.5E-08 1.6E-12 68.4 9.4 155 29-183 48-265 (459)
186 KOG2796 Uncharacterized conser 98.8 1E-07 2.3E-12 66.4 9.9 138 32-169 184-333 (366)
187 PF13428 TPR_14: Tetratricopep 98.8 2E-08 4.3E-13 51.4 4.9 42 92-133 2-43 (44)
188 PF13431 TPR_17: Tetratricopep 98.7 1.8E-08 3.9E-13 48.3 2.6 31 114-144 2-32 (34)
189 KOG1941 Acetylcholine receptor 98.7 8.9E-08 1.9E-12 69.6 7.1 137 58-194 123-281 (518)
190 PF06552 TOM20_plant: Plant sp 98.7 1.6E-07 3.4E-12 61.9 7.3 93 41-133 7-122 (186)
191 COG4105 ComL DNA uptake lipopr 98.6 2.4E-06 5.3E-11 59.6 13.1 103 56-158 33-149 (254)
192 COG0457 NrfG FOG: TPR repeat [ 98.6 2.6E-06 5.7E-11 59.1 13.6 105 66-170 139-247 (291)
193 COG0457 NrfG FOG: TPR repeat [ 98.6 3.2E-06 6.8E-11 58.7 14.0 157 29-185 63-228 (291)
194 PF13431 TPR_17: Tetratricopep 98.6 4.1E-08 8.9E-13 47.1 2.9 34 79-112 1-34 (34)
195 KOG4642 Chaperone-dependent E3 98.6 7.9E-08 1.7E-12 65.9 4.7 92 94-185 13-104 (284)
196 PRK04841 transcriptional regul 98.6 1.7E-06 3.8E-11 72.6 13.7 153 30-182 457-635 (903)
197 PF00515 TPR_1: Tetratricopept 98.6 1.2E-07 2.6E-12 45.6 4.2 32 126-157 2-33 (34)
198 PF05843 Suf: Suppressor of fo 98.6 3.8E-06 8.3E-11 60.9 13.2 119 59-177 3-125 (280)
199 KOG2053 Mitochondrial inherita 98.6 2E-06 4.3E-11 69.1 12.4 109 70-179 22-130 (932)
200 PLN03077 Protein ECB2; Provisi 98.6 1.4E-06 3E-11 72.8 12.2 143 33-181 532-679 (857)
201 KOG2796 Uncharacterized conser 98.5 2.6E-06 5.5E-11 59.7 11.1 130 57-186 177-313 (366)
202 PF07719 TPR_2: Tetratricopept 98.5 2.4E-07 5.2E-12 44.4 4.5 33 126-158 2-34 (34)
203 PF00515 TPR_1: Tetratricopept 98.5 2.2E-07 4.8E-12 44.6 4.4 32 92-123 2-33 (34)
204 KOG2610 Uncharacterized conser 98.5 1.9E-06 4.1E-11 62.4 10.7 134 60-194 106-243 (491)
205 KOG2471 TPR repeat-containing 98.5 3.4E-07 7.3E-12 69.1 6.7 137 36-172 217-382 (696)
206 PRK04841 transcriptional regul 98.5 2.6E-06 5.5E-11 71.6 12.1 160 29-188 535-760 (903)
207 PF03704 BTAD: Bacterial trans 98.5 1.3E-05 2.8E-10 52.4 13.1 95 60-154 9-125 (146)
208 KOG3081 Vesicle coat complex C 98.5 5.8E-06 1.3E-10 57.9 11.5 129 33-161 145-278 (299)
209 KOG0545 Aryl-hydrocarbon recep 98.5 1.1E-06 2.5E-11 60.8 7.7 98 29-126 182-299 (329)
210 PF07719 TPR_2: Tetratricopept 98.5 5.2E-07 1.1E-11 43.2 4.5 32 92-123 2-33 (34)
211 KOG1308 Hsp70-interacting prot 98.5 2E-07 4.4E-12 67.1 4.1 99 59-157 116-214 (377)
212 KOG1915 Cell cycle control pro 98.4 2.8E-05 6E-10 59.0 14.4 126 54-180 70-195 (677)
213 KOG2053 Mitochondrial inherita 98.4 7.1E-06 1.5E-10 66.0 11.4 135 36-171 20-156 (932)
214 KOG3785 Uncharacterized conser 98.4 5.1E-06 1.1E-10 60.7 9.6 85 67-151 32-117 (557)
215 KOG1070 rRNA processing protei 98.4 6.5E-06 1.4E-10 69.2 11.3 135 57-191 1530-1666(1710)
216 KOG0551 Hsp90 co-chaperone CNS 98.4 1.4E-06 3.1E-11 62.7 6.7 96 29-124 85-186 (390)
217 KOG2610 Uncharacterized conser 98.4 1.2E-05 2.5E-10 58.4 10.7 150 37-186 115-274 (491)
218 COG3118 Thioredoxin domain-con 98.3 4.7E-05 1E-09 54.3 13.2 125 58-183 135-260 (304)
219 COG3071 HemY Uncharacterized e 98.3 0.0001 2.2E-09 54.5 15.2 114 64-177 91-205 (400)
220 KOG1941 Acetylcholine receptor 98.3 6.2E-06 1.3E-10 60.4 7.7 164 33-196 51-243 (518)
221 KOG1585 Protein required for f 98.2 8E-05 1.7E-09 51.8 12.3 128 57-184 31-175 (308)
222 PF05843 Suf: Suppressor of fo 98.2 3.6E-05 7.9E-10 55.9 11.5 125 37-161 13-143 (280)
223 PF04184 ST7: ST7 protein; In 98.2 3.9E-05 8.4E-10 58.5 10.6 117 62-180 173-316 (539)
224 PF13181 TPR_8: Tetratricopept 98.2 4.1E-06 8.9E-11 40.1 3.7 30 127-156 3-32 (34)
225 KOG1586 Protein required for f 98.2 6.7E-05 1.4E-09 51.8 10.5 128 32-159 41-188 (288)
226 KOG1915 Cell cycle control pro 98.1 7.7E-05 1.7E-09 56.7 11.5 139 38-178 86-226 (677)
227 KOG0376 Serine-threonine phosp 98.1 1.3E-06 2.8E-11 65.8 2.3 107 30-136 9-117 (476)
228 COG2976 Uncharacterized protei 98.1 0.00014 3.1E-09 48.8 11.2 100 59-159 91-193 (207)
229 PF10300 DUF3808: Protein of u 98.1 7.8E-05 1.7E-09 58.1 11.6 106 70-175 246-356 (468)
230 PF10300 DUF3808: Protein of u 98.1 4.6E-05 1E-09 59.3 10.1 115 41-155 249-377 (468)
231 PF13181 TPR_8: Tetratricopept 98.1 9.3E-06 2E-10 38.8 4.1 32 92-123 2-33 (34)
232 KOG4507 Uncharacterized conser 98.1 2.2E-05 4.8E-10 60.9 8.0 105 66-170 616-721 (886)
233 PF04781 DUF627: Protein of un 98.0 0.00014 3E-09 44.3 9.0 92 63-154 2-107 (111)
234 PF14561 TPR_20: Tetratricopep 98.0 8.4E-05 1.8E-09 44.2 7.8 69 111-179 8-78 (90)
235 PF04184 ST7: ST7 protein; In 98.0 8.2E-05 1.8E-09 56.8 9.4 105 57-161 259-382 (539)
236 PRK10941 hypothetical protein; 98.0 0.00023 5E-09 51.1 11.0 75 92-166 182-256 (269)
237 PF14853 Fis1_TPR_C: Fis1 C-te 98.0 9.7E-05 2.1E-09 39.0 6.8 43 127-169 3-45 (53)
238 KOG2396 HAT (Half-A-TPR) repea 98.0 0.00025 5.4E-09 54.2 11.4 92 75-166 89-181 (568)
239 KOG1070 rRNA processing protei 97.9 0.00015 3.3E-09 61.4 10.6 123 33-155 1538-1664(1710)
240 KOG2471 TPR repeat-containing 97.9 1.8E-05 3.9E-10 60.1 4.9 106 32-137 247-381 (696)
241 KOG3824 Huntingtin interacting 97.9 7E-05 1.5E-09 53.9 7.5 78 57-134 116-193 (472)
242 PF03704 BTAD: Bacterial trans 97.9 0.00017 3.8E-09 47.0 9.0 65 56-120 61-125 (146)
243 PRK10941 hypothetical protein; 97.9 0.00026 5.5E-09 50.9 10.3 78 57-134 181-258 (269)
244 PF13174 TPR_6: Tetratricopept 97.9 3.1E-05 6.6E-10 36.6 3.6 31 127-157 2-32 (33)
245 KOG3824 Huntingtin interacting 97.9 0.00011 2.4E-09 52.9 7.7 74 95-168 120-193 (472)
246 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 0.00012 2.7E-09 38.6 6.1 42 92-133 2-43 (53)
247 KOG1310 WD40 repeat protein [G 97.8 0.00023 5E-09 54.9 9.4 108 52-159 369-479 (758)
248 PF13176 TPR_7: Tetratricopept 97.8 3.4E-05 7.4E-10 37.4 3.4 22 95-116 3-24 (36)
249 KOG1586 Protein required for f 97.8 0.0024 5.1E-08 44.5 13.1 124 58-182 35-177 (288)
250 PF13174 TPR_6: Tetratricopept 97.8 5.6E-05 1.2E-09 35.6 3.9 30 94-123 3-32 (33)
251 KOG1308 Hsp70-interacting prot 97.8 4.1E-05 8.8E-10 55.6 4.6 91 33-123 122-214 (377)
252 PF13176 TPR_7: Tetratricopept 97.8 5.1E-05 1.1E-09 36.8 3.6 28 127-154 1-28 (36)
253 PF09613 HrpB1_HrpK: Bacterial 97.8 0.0041 8.9E-08 40.8 14.7 108 56-165 9-116 (160)
254 PF13281 DUF4071: Domain of un 97.8 0.0029 6.2E-08 47.5 14.0 90 34-123 150-258 (374)
255 COG0790 FOG: TPR repeat, SEL1 97.7 0.002 4.4E-08 47.1 13.0 129 40-173 92-236 (292)
256 PF14561 TPR_20: Tetratricopep 97.7 0.00085 1.8E-08 39.9 9.0 67 76-142 7-75 (90)
257 PF02259 FAT: FAT domain; Int 97.7 0.003 6.5E-08 47.4 14.2 124 53-176 142-309 (352)
258 PF12968 DUF3856: Domain of Un 97.7 0.0033 7.2E-08 38.9 11.4 91 64-154 16-129 (144)
259 KOG2047 mRNA splicing factor [ 97.7 0.0049 1.1E-07 48.9 15.0 130 56-185 386-537 (835)
260 PF09613 HrpB1_HrpK: Bacterial 97.7 0.002 4.3E-08 42.3 10.4 85 92-176 11-95 (160)
261 smart00028 TPR Tetratricopepti 97.6 0.00012 2.5E-09 33.9 3.5 31 127-157 3-33 (34)
262 KOG1585 Protein required for f 97.6 0.0016 3.4E-08 45.6 9.6 93 62-154 115-219 (308)
263 KOG1550 Extracellular protein 97.5 0.0021 4.5E-08 51.4 11.2 127 41-171 228-372 (552)
264 COG3118 Thioredoxin domain-con 97.5 0.0034 7.4E-08 45.2 11.0 61 91-151 134-194 (304)
265 KOG3364 Membrane protein invol 97.5 0.0098 2.1E-07 37.8 11.3 81 91-171 32-117 (149)
266 smart00028 TPR Tetratricopepti 97.5 0.00026 5.6E-09 32.6 3.6 30 93-122 3-32 (34)
267 PF13281 DUF4071: Domain of un 97.4 0.0055 1.2E-07 46.1 11.8 118 56-174 140-274 (374)
268 PF04910 Tcf25: Transcriptiona 97.4 0.0044 9.5E-08 46.8 11.5 124 52-175 35-194 (360)
269 COG2976 Uncharacterized protei 97.4 0.0012 2.5E-08 44.6 7.2 96 29-125 93-193 (207)
270 COG4976 Predicted methyltransf 97.4 0.0004 8.6E-09 48.0 4.8 59 66-124 4-62 (287)
271 KOG3617 WD40 and TPR repeat-co 97.4 0.0024 5.2E-08 52.2 9.7 116 38-153 839-995 (1416)
272 PF15015 NYD-SP12_N: Spermatog 97.4 0.0015 3.3E-08 49.1 7.9 87 62-148 181-285 (569)
273 PF02259 FAT: FAT domain; Int 97.3 0.0048 1E-07 46.3 10.7 128 30-157 151-341 (352)
274 KOG4507 Uncharacterized conser 97.3 0.0023 4.9E-08 50.3 8.5 102 61-162 216-320 (886)
275 KOG4814 Uncharacterized conser 97.3 0.0051 1.1E-07 48.8 10.4 97 58-154 355-457 (872)
276 COG4649 Uncharacterized protei 97.3 0.025 5.4E-07 37.8 13.0 140 32-172 65-213 (221)
277 KOG2300 Uncharacterized conser 97.2 0.026 5.7E-07 43.6 13.4 155 33-187 331-513 (629)
278 PF10602 RPN7: 26S proteasome 97.2 0.012 2.7E-07 39.7 10.8 103 53-155 32-143 (177)
279 COG4976 Predicted methyltransf 97.2 0.00079 1.7E-08 46.6 4.7 56 103-158 7-62 (287)
280 PF04781 DUF627: Protein of un 97.2 0.0064 1.4E-07 37.2 8.0 87 97-183 2-102 (111)
281 PF08424 NRDE-2: NRDE-2, neces 97.2 0.019 4E-07 42.8 12.2 141 52-192 14-187 (321)
282 COG3914 Spy Predicted O-linked 97.2 0.017 3.8E-07 45.4 12.0 110 63-172 73-189 (620)
283 TIGR02561 HrpB1_HrpK type III 97.1 0.029 6.3E-07 36.4 12.7 86 58-143 11-96 (153)
284 TIGR02561 HrpB1_HrpK type III 97.1 0.013 2.8E-07 38.0 9.4 83 94-176 13-95 (153)
285 PF09986 DUF2225: Uncharacteri 97.1 0.016 3.6E-07 40.4 10.8 91 68-158 88-198 (214)
286 COG3898 Uncharacterized membra 97.1 0.055 1.2E-06 40.8 13.7 148 32-179 127-283 (531)
287 KOG2047 mRNA splicing factor [ 97.1 0.033 7.3E-07 44.5 13.2 56 30-85 392-453 (835)
288 PF08424 NRDE-2: NRDE-2, neces 97.1 0.02 4.3E-07 42.6 11.8 92 78-169 6-109 (321)
289 PF08631 SPO22: Meiosis protei 97.1 0.048 1E-06 39.8 13.6 120 37-156 5-152 (278)
290 KOG2396 HAT (Half-A-TPR) repea 97.1 0.0045 9.8E-08 47.6 8.1 78 53-130 101-179 (568)
291 COG5191 Uncharacterized conser 97.1 0.0018 3.9E-08 47.0 5.6 86 80-165 96-182 (435)
292 PF09986 DUF2225: Uncharacteri 97.0 0.012 2.6E-07 41.0 9.5 96 38-133 90-208 (214)
293 KOG3364 Membrane protein invol 97.0 0.013 2.8E-07 37.2 8.4 79 56-134 31-114 (149)
294 KOG1839 Uncharacterized protei 97.0 0.014 2.9E-07 50.0 10.8 154 29-182 936-1122(1236)
295 KOG1550 Extracellular protein 97.0 0.015 3.3E-07 46.5 10.9 125 39-169 263-406 (552)
296 KOG0530 Protein farnesyltransf 97.0 0.016 3.6E-07 41.1 9.3 113 42-154 60-176 (318)
297 PF04910 Tcf25: Transcriptiona 97.0 0.024 5.2E-07 42.9 11.0 129 29-157 44-225 (360)
298 KOG0546 HSP90 co-chaperone CPR 96.9 0.0028 6E-08 46.6 5.6 121 60-180 225-364 (372)
299 PF15015 NYD-SP12_N: Spermatog 96.9 0.013 2.9E-07 44.3 9.1 66 128-193 231-296 (569)
300 COG2912 Uncharacterized conser 96.9 0.016 3.5E-07 41.4 8.8 72 92-163 182-253 (269)
301 PF13374 TPR_10: Tetratricopep 96.8 0.0037 8.1E-08 30.9 4.3 28 93-120 4-31 (42)
302 COG0790 FOG: TPR repeat, SEL1 96.8 0.07 1.5E-06 39.1 12.6 126 29-159 113-271 (292)
303 PF13374 TPR_10: Tetratricopep 96.8 0.0034 7.4E-08 31.0 4.1 30 125-154 2-31 (42)
304 COG2912 Uncharacterized conser 96.8 0.015 3.3E-07 41.5 8.3 76 58-133 182-257 (269)
305 KOG0530 Protein farnesyltransf 96.8 0.11 2.4E-06 37.2 12.7 116 65-180 51-168 (318)
306 PF07079 DUF1347: Protein of u 96.8 0.13 2.7E-06 39.7 13.3 123 56-181 378-517 (549)
307 KOG3617 WD40 and TPR repeat-co 96.7 0.055 1.2E-06 44.8 11.8 117 65-183 834-991 (1416)
308 PF12968 DUF3856: Domain of Un 96.7 0.038 8.2E-07 34.4 8.4 89 32-120 16-129 (144)
309 COG5191 Uncharacterized conser 96.7 0.0032 7E-08 45.7 4.4 80 52-131 102-182 (435)
310 PF10373 EST1_DNA_bind: Est1 D 96.6 0.012 2.7E-07 42.6 7.4 62 76-137 1-62 (278)
311 PRK13184 pknD serine/threonine 96.6 0.024 5.2E-07 47.9 9.6 100 62-162 480-589 (932)
312 KOG1258 mRNA processing protei 96.6 0.22 4.7E-06 39.6 13.7 128 52-179 292-420 (577)
313 KOG2300 Uncharacterized conser 96.6 0.049 1.1E-06 42.2 10.1 144 28-174 370-540 (629)
314 PF10602 RPN7: 26S proteasome 96.6 0.084 1.8E-06 35.7 10.4 96 91-186 36-140 (177)
315 KOG1310 WD40 repeat protein [G 96.5 0.011 2.5E-07 46.0 6.7 91 94-184 377-470 (758)
316 PF08631 SPO22: Meiosis protei 96.5 0.15 3.2E-06 37.2 12.0 114 67-180 3-142 (278)
317 KOG2581 26S proteasome regulat 96.4 0.15 3.2E-06 38.8 11.7 147 31-177 131-305 (493)
318 PF12862 Apc5: Anaphase-promot 96.4 0.031 6.7E-07 33.5 7.1 54 102-155 9-71 (94)
319 COG3629 DnrI DNA-binding trans 96.4 0.037 8E-07 40.1 8.2 63 91-153 153-215 (280)
320 COG3914 Spy Predicted O-linked 96.4 0.11 2.4E-06 41.2 11.0 111 71-181 45-164 (620)
321 COG3898 Uncharacterized membra 96.3 0.18 3.9E-06 38.2 11.3 124 30-154 89-217 (531)
322 KOG4814 Uncharacterized conser 96.3 0.05 1.1E-06 43.5 8.8 88 95-182 358-451 (872)
323 PF10579 Rapsyn_N: Rapsyn N-te 96.3 0.089 1.9E-06 30.1 7.6 54 62-115 11-67 (80)
324 KOG0985 Vesicle coat protein c 96.1 0.19 4.2E-06 42.7 11.7 142 31-185 1054-1246(1666)
325 PF12862 Apc5: Anaphase-promot 96.1 0.033 7.1E-07 33.4 5.9 56 67-122 8-72 (94)
326 PF07720 TPR_3: Tetratricopept 96.1 0.029 6.2E-07 27.0 4.5 21 127-147 3-23 (36)
327 COG3629 DnrI DNA-binding trans 96.0 0.06 1.3E-06 39.0 7.8 65 56-120 152-216 (280)
328 PF10579 Rapsyn_N: Rapsyn N-te 96.0 0.099 2.1E-06 29.9 7.0 52 96-147 11-65 (80)
329 PF10373 EST1_DNA_bind: Est1 D 96.0 0.056 1.2E-06 39.2 7.8 62 110-171 1-62 (278)
330 KOG2422 Uncharacterized conser 96.0 0.2 4.4E-06 39.7 10.7 100 52-151 279-404 (665)
331 PF07720 TPR_3: Tetratricopept 95.9 0.039 8.5E-07 26.5 4.5 20 94-113 4-23 (36)
332 PF07721 TPR_4: Tetratricopept 95.9 0.013 2.7E-07 25.9 2.6 21 128-148 4-24 (26)
333 PF07079 DUF1347: Protein of u 95.8 0.36 7.9E-06 37.3 11.3 93 59-151 8-105 (549)
334 PRK15180 Vi polysaccharide bio 95.8 0.032 6.9E-07 43.3 5.7 106 53-158 319-424 (831)
335 PF10516 SHNi-TPR: SHNi-TPR; 95.8 0.024 5.2E-07 27.6 3.4 27 94-120 4-30 (38)
336 PF10516 SHNi-TPR: SHNi-TPR; 95.8 0.019 4.2E-07 27.9 3.1 30 126-155 2-31 (38)
337 COG4649 Uncharacterized protei 95.7 0.18 3.9E-06 33.8 8.4 108 29-137 98-212 (221)
338 PF07721 TPR_4: Tetratricopept 95.7 0.022 4.7E-07 25.1 3.0 23 93-115 3-25 (26)
339 KOG0529 Protein geranylgeranyl 95.7 0.35 7.7E-06 36.8 10.7 100 72-171 90-195 (421)
340 PRK15180 Vi polysaccharide bio 95.6 0.11 2.5E-06 40.3 8.0 111 68-178 300-410 (831)
341 COG2909 MalT ATP-dependent tra 95.4 1 2.2E-05 37.8 13.2 118 57-174 415-552 (894)
342 KOG1839 Uncharacterized protei 95.2 0.17 3.7E-06 43.8 8.7 126 29-154 977-1128(1236)
343 PRK13184 pknD serine/threonine 95.1 0.21 4.5E-06 42.5 8.9 127 32-159 482-625 (932)
344 COG3947 Response regulator con 95.1 0.16 3.6E-06 36.9 7.1 53 98-150 286-338 (361)
345 PF11817 Foie-gras_1: Foie gra 94.8 0.3 6.4E-06 35.0 7.9 62 91-152 178-245 (247)
346 PF11207 DUF2989: Protein of u 94.7 0.88 1.9E-05 31.4 9.5 73 107-180 122-199 (203)
347 KOG1914 mRNA cleavage and poly 94.6 0.31 6.7E-06 38.5 8.0 99 52-152 15-114 (656)
348 KOG3616 Selective LIM binding 94.6 0.59 1.3E-05 38.7 9.8 51 32-82 668-731 (1636)
349 KOG0890 Protein kinase of the 94.5 0.97 2.1E-05 42.0 11.6 116 53-170 1666-1800(2382)
350 KOG1914 mRNA cleavage and poly 94.5 0.99 2.1E-05 35.9 10.4 73 81-154 10-82 (656)
351 PF10255 Paf67: RNA polymerase 94.5 0.11 2.3E-06 39.8 5.2 61 93-153 124-192 (404)
352 PF14863 Alkyl_sulf_dimr: Alky 94.2 0.4 8.7E-06 31.1 6.8 51 127-177 72-122 (141)
353 KOG2041 WD40 repeat protein [G 94.2 0.77 1.7E-05 37.7 9.5 59 92-150 797-877 (1189)
354 PF04053 Coatomer_WDAD: Coatom 94.1 1.3 2.7E-05 34.8 10.5 75 31-119 301-375 (443)
355 PF04053 Coatomer_WDAD: Coatom 94.1 2.1 4.5E-05 33.6 11.6 76 61-152 299-374 (443)
356 COG4455 ImpE Protein of avirul 94.0 0.8 1.7E-05 32.1 8.1 63 64-126 8-70 (273)
357 COG2909 MalT ATP-dependent tra 94.0 3.4 7.3E-05 35.0 13.9 112 31-142 421-554 (894)
358 TIGR03504 FimV_Cterm FimV C-te 93.8 0.19 4.2E-06 25.3 3.8 25 129-153 3-27 (44)
359 KOG4151 Myosin assembly protei 93.7 0.54 1.2E-05 38.7 8.0 113 60-172 56-174 (748)
360 COG3947 Response regulator con 93.7 0.52 1.1E-05 34.4 7.1 61 58-118 280-340 (361)
361 smart00386 HAT HAT (Half-A-TPR 93.7 0.25 5.5E-06 22.4 4.1 30 105-134 1-30 (33)
362 KOG3807 Predicted membrane pro 93.7 2.3 4.9E-05 31.9 10.9 116 60-177 187-329 (556)
363 KOG0529 Protein geranylgeranyl 93.6 2.4 5.2E-05 32.5 10.7 112 64-175 35-161 (421)
364 KOG2422 Uncharacterized conser 93.4 3.1 6.7E-05 33.5 11.3 102 71-172 252-390 (665)
365 PF11817 Foie-gras_1: Foie gra 93.2 2.2 4.9E-05 30.6 10.0 77 108-184 155-243 (247)
366 PF11207 DUF2989: Protein of u 93.2 1.9 4.2E-05 29.7 13.1 72 73-145 122-198 (203)
367 PF10345 Cohesin_load: Cohesin 93.0 4.4 9.4E-05 33.4 14.3 106 55-161 57-177 (608)
368 KOG0546 HSP90 co-chaperone CPR 93.0 0.08 1.7E-06 39.3 2.3 109 30-138 227-356 (372)
369 TIGR03504 FimV_Cterm FimV C-te 92.6 0.34 7.3E-06 24.5 3.6 26 95-120 3-28 (44)
370 PF12854 PPR_1: PPR repeat 92.5 0.56 1.2E-05 22.0 4.2 26 91-116 7-32 (34)
371 COG4455 ImpE Protein of avirul 92.4 0.88 1.9E-05 31.9 6.5 58 34-91 10-69 (273)
372 KOG2041 WD40 repeat protein [G 92.4 1.4 3.1E-05 36.3 8.5 60 55-114 794-875 (1189)
373 PF10255 Paf67: RNA polymerase 92.3 1.9 4E-05 33.3 8.8 61 59-120 124-193 (404)
374 COG4941 Predicted RNA polymera 92.3 1.8 3.9E-05 32.4 8.3 93 72-165 311-405 (415)
375 KOG2581 26S proteasome regulat 92.3 4.3 9.2E-05 31.3 10.5 69 55-123 207-279 (493)
376 PF14863 Alkyl_sulf_dimr: Alky 92.1 0.8 1.7E-05 29.7 5.8 51 91-141 70-120 (141)
377 PF10345 Cohesin_load: Cohesin 91.9 4 8.7E-05 33.6 10.9 116 59-174 303-464 (608)
378 KOG1538 Uncharacterized conser 91.7 0.74 1.6E-05 37.5 6.2 109 32-151 710-830 (1081)
379 KOG1464 COP9 signalosome, subu 91.7 0.7 1.5E-05 33.5 5.6 159 38-196 40-268 (440)
380 KOG0686 COP9 signalosome, subu 91.4 2.6 5.6E-05 32.4 8.4 96 57-152 150-256 (466)
381 KOG0985 Vesicle coat protein c 91.1 9.7 0.00021 33.3 12.1 160 30-196 1199-1391(1666)
382 KOG3616 Selective LIM binding 90.6 3.1 6.7E-05 34.8 8.8 79 32-117 713-791 (1636)
383 PF12854 PPR_1: PPR repeat 90.4 0.95 2.1E-05 21.2 3.8 28 124-151 6-33 (34)
384 PF09670 Cas_Cas02710: CRISPR- 90.3 6.1 0.00013 30.4 10.0 62 59-120 133-198 (379)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 90.2 3.3 7.2E-05 26.3 7.6 43 75-117 81-125 (126)
386 KOG3807 Predicted membrane pro 90.1 3.4 7.4E-05 31.0 7.9 89 93-183 186-299 (556)
387 PF13041 PPR_2: PPR repeat fam 89.7 1.7 3.7E-05 22.2 5.7 27 127-153 5-31 (50)
388 KOG1258 mRNA processing protei 89.6 9.9 0.00021 30.8 13.1 114 59-172 368-488 (577)
389 PF09797 NatB_MDM20: N-acetylt 89.0 4.4 9.5E-05 30.9 8.4 48 70-117 196-243 (365)
390 KOG0276 Vesicle coat complex C 89.0 5.2 0.00011 32.6 8.6 49 101-154 647-695 (794)
391 PF13226 DUF4034: Domain of un 88.8 7.6 0.00016 28.5 9.0 34 142-175 116-149 (277)
392 PF11846 DUF3366: Domain of un 88.7 2.6 5.6E-05 28.9 6.4 50 107-157 127-176 (193)
393 KOG0687 26S proteasome regulat 88.5 8.5 0.00018 28.9 8.9 101 54-154 101-210 (393)
394 PHA02537 M terminase endonucle 88.2 2.3 5.1E-05 30.1 5.9 104 68-172 94-224 (230)
395 KOG4014 Uncharacterized conser 88.2 6.5 0.00014 27.0 9.8 127 38-170 48-211 (248)
396 PF01535 PPR: PPR repeat; Int 87.7 1.3 2.9E-05 19.6 3.2 22 130-151 5-26 (31)
397 PF09205 DUF1955: Domain of un 87.2 6.1 0.00013 25.5 7.2 55 100-154 95-149 (161)
398 PF11846 DUF3366: Domain of un 87.0 3.9 8.5E-05 28.0 6.5 49 73-122 127-175 (193)
399 PRK11619 lytic murein transgly 86.7 17 0.00037 30.3 11.1 121 32-153 248-374 (644)
400 KOG4151 Myosin assembly protei 86.7 3.4 7.3E-05 34.4 6.7 101 29-129 57-165 (748)
401 KOG3783 Uncharacterized conser 86.3 11 0.00023 30.3 8.9 95 75-169 251-348 (546)
402 cd02682 MIT_AAA_Arch MIT: doma 86.1 4.6 9.9E-05 23.1 5.9 24 60-83 9-32 (75)
403 PF09670 Cas_Cas02710: CRISPR- 86.0 3.9 8.4E-05 31.5 6.5 63 24-86 130-198 (379)
404 COG5187 RPN7 26S proteasome re 85.9 11 0.00023 28.0 8.1 101 54-154 112-221 (412)
405 PRK15490 Vi polysaccharide bio 85.9 18 0.00039 29.6 12.1 77 71-149 22-98 (578)
406 PF13226 DUF4034: Domain of un 84.6 9.7 0.00021 27.9 7.6 68 75-142 61-150 (277)
407 KOG2114 Vacuolar assembly/sort 84.0 12 0.00025 31.8 8.5 54 33-86 342-397 (933)
408 KOG0890 Protein kinase of the 83.8 16 0.00035 34.8 9.8 115 31-150 1389-1508(2382)
409 TIGR00756 PPR pentatricopeptid 83.3 3.1 6.6E-05 18.8 3.7 26 128-153 3-28 (35)
410 PF10952 DUF2753: Protein of u 83.0 9.6 0.00021 24.2 6.2 66 60-125 4-88 (140)
411 PF07219 HemY_N: HemY protein 82.9 8.7 0.00019 23.6 6.9 44 96-139 64-107 (108)
412 COG5107 RNA14 Pre-mRNA 3'-end 82.7 22 0.00048 28.2 11.8 118 52-170 37-163 (660)
413 PF09797 NatB_MDM20: N-acetylt 81.9 4.6 9.9E-05 30.9 5.4 46 105-150 197-242 (365)
414 COG5107 RNA14 Pre-mRNA 3'-end 81.8 11 0.00025 29.7 7.3 77 79-155 30-106 (660)
415 COG1747 Uncharacterized N-term 81.8 18 0.00038 29.2 8.4 82 88-171 63-144 (711)
416 PF04190 DUF410: Protein of un 81.2 18 0.0004 26.2 11.6 90 59-148 12-113 (260)
417 PF02184 HAT: HAT (Half-A-TPR) 80.4 4.6 9.9E-05 18.8 3.1 16 107-122 3-18 (32)
418 COG5159 RPN6 26S proteasome re 80.2 22 0.00047 26.4 8.1 152 30-181 8-187 (421)
419 COG5536 BET4 Protein prenyltra 80.2 8.3 0.00018 28.2 5.8 117 52-168 103-236 (328)
420 cd02682 MIT_AAA_Arch MIT: doma 79.7 9.2 0.0002 21.9 7.1 23 144-166 32-54 (75)
421 PF02064 MAS20: MAS20 protein 79.4 7.6 0.00016 24.5 4.8 31 62-92 68-98 (121)
422 PF09205 DUF1955: Domain of un 79.0 15 0.00032 23.8 7.2 54 67-120 96-149 (161)
423 smart00671 SEL1 Sel1-like repe 79.0 5 0.00011 18.4 3.8 27 127-153 3-33 (36)
424 PF02064 MAS20: MAS20 protein 79.0 8.6 0.00019 24.3 5.0 31 95-125 67-97 (121)
425 PF12739 TRAPPC-Trs85: ER-Golg 78.8 29 0.00063 27.1 11.5 112 58-169 209-351 (414)
426 PF13041 PPR_2: PPR repeat fam 78.5 7 0.00015 19.8 6.1 27 93-119 5-31 (50)
427 PF04212 MIT: MIT (microtubule 78.4 7 0.00015 21.6 4.2 17 103-119 17-33 (69)
428 PF08238 Sel1: Sel1 repeat; I 78.2 5.7 0.00012 18.7 3.8 13 141-153 24-36 (39)
429 PF04212 MIT: MIT (microtubule 78.2 6.1 0.00013 21.9 3.9 26 129-154 9-34 (69)
430 COG5536 BET4 Protein prenyltra 77.9 9.3 0.0002 28.0 5.4 115 52-166 61-191 (328)
431 KOG0292 Vesicle coat complex C 77.3 37 0.0008 29.4 9.2 125 56-180 990-1139(1202)
432 KOG1463 26S proteasome regulat 77.2 19 0.00042 27.3 7.0 152 31-182 134-310 (411)
433 PF07163 Pex26: Pex26 protein; 77.1 27 0.00058 25.8 10.4 122 60-182 38-181 (309)
434 PF12753 Nro1: Nuclear pore co 77.0 3.9 8.4E-05 31.3 3.6 32 107-140 334-365 (404)
435 PF13812 PPR_3: Pentatricopept 76.9 5.6 0.00012 17.9 3.9 25 128-152 4-28 (34)
436 PF05053 Menin: Menin; InterP 76.6 32 0.00069 28.0 8.4 62 108-169 296-368 (618)
437 PRK11619 lytic murein transgly 76.5 44 0.00096 28.0 13.2 116 65-182 320-462 (644)
438 KOG1464 COP9 signalosome, subu 76.1 13 0.00028 27.3 5.8 52 69-120 39-94 (440)
439 KOG0686 COP9 signalosome, subu 75.5 37 0.0008 26.5 11.0 94 92-185 151-255 (466)
440 PF07219 HemY_N: HemY protein 74.7 17 0.00037 22.3 6.8 26 61-86 63-88 (108)
441 PRK15490 Vi polysaccharide bio 73.9 42 0.0009 27.6 8.6 79 100-180 17-95 (578)
442 KOG0276 Vesicle coat complex C 73.4 52 0.0011 27.3 10.2 79 68-151 648-747 (794)
443 cd02681 MIT_calpain7_1 MIT: do 73.3 11 0.00023 21.6 4.0 16 104-119 19-34 (76)
444 PF05053 Menin: Menin; InterP 73.3 32 0.00068 28.1 7.7 65 56-120 276-347 (618)
445 PF10952 DUF2753: Protein of u 73.2 21 0.00046 22.7 8.9 82 94-175 4-109 (140)
446 COG1747 Uncharacterized N-term 72.9 49 0.0011 26.8 9.7 79 72-153 81-159 (711)
447 COG4259 Uncharacterized protei 72.9 13 0.00028 22.6 4.3 37 124-160 71-107 (121)
448 PF12583 TPPII_N: Tripeptidyl 72.8 22 0.00048 22.8 5.8 43 58-100 77-119 (139)
449 KOG1497 COP9 signalosome, subu 72.8 39 0.00084 25.5 9.3 91 29-119 107-212 (399)
450 PF04190 DUF410: Protein of un 72.4 35 0.00075 24.8 11.0 100 69-183 2-114 (260)
451 KOG1538 Uncharacterized conser 71.9 59 0.0013 27.3 9.0 24 160-183 805-828 (1081)
452 PF06957 COPI_C: Coatomer (COP 71.4 48 0.001 26.1 9.9 104 58-161 205-336 (422)
453 TIGR02996 rpt_mate_G_obs repea 71.3 11 0.00024 18.7 3.4 30 114-143 5-34 (42)
454 cd02683 MIT_1 MIT: domain cont 71.0 12 0.00026 21.5 3.9 13 105-117 20-32 (77)
455 smart00777 Mad3_BUB1_I Mad3/BU 71.0 24 0.00052 22.4 5.9 27 123-149 97-123 (125)
456 KOG0128 RNA-binding protein SA 70.8 68 0.0015 27.6 9.6 103 52-155 108-220 (881)
457 KOG1497 COP9 signalosome, subu 70.8 43 0.00094 25.3 11.9 95 57-152 103-211 (399)
458 KOG2561 Adaptor protein NUB1, 70.6 51 0.0011 26.1 8.0 95 60-154 166-296 (568)
459 PF12753 Nro1: Nuclear pore co 70.5 8.4 0.00018 29.6 4.0 45 73-119 334-390 (404)
460 KOG2114 Vacuolar assembly/sort 68.9 62 0.0014 27.9 8.7 56 64-120 341-397 (933)
461 COG5600 Transcription-associat 68.8 24 0.00052 27.1 6.0 62 62-123 182-252 (413)
462 PF04348 LppC: LppC putative l 68.6 1.6 3.5E-05 35.2 0.0 49 33-81 32-85 (536)
463 KOG2758 Translation initiation 67.9 40 0.00087 25.5 6.8 68 52-120 124-196 (432)
464 KOG3783 Uncharacterized conser 67.6 66 0.0014 26.1 11.6 71 87-157 444-523 (546)
465 PF00244 14-3-3: 14-3-3 protei 67.0 36 0.00077 24.4 6.5 15 138-152 182-196 (236)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 66.5 31 0.00066 21.9 11.2 111 40-152 7-126 (126)
467 KOG4563 Cell cycle-regulated h 66.1 19 0.00041 27.5 5.0 29 58-86 42-70 (400)
468 cd02679 MIT_spastin MIT: domai 65.8 17 0.00037 21.0 3.8 15 105-119 22-36 (79)
469 cd02679 MIT_spastin MIT: domai 65.1 17 0.00036 21.0 3.7 34 106-154 4-37 (79)
470 PF00244 14-3-3: 14-3-3 protei 64.9 49 0.0011 23.7 11.4 48 142-189 143-199 (236)
471 smart00299 CLH Clathrin heavy 63.9 35 0.00076 21.7 6.9 50 65-115 15-64 (140)
472 COG2015 Alkyl sulfatase and re 63.3 38 0.00082 27.2 6.2 52 128-179 455-506 (655)
473 PF01239 PPTA: Protein prenylt 62.4 14 0.0003 16.6 4.2 21 147-167 5-25 (31)
474 TIGR02710 CRISPR-associated pr 62.4 65 0.0014 25.0 7.3 139 16-154 121-275 (380)
475 smart00299 CLH Clathrin heavy 62.1 38 0.00083 21.5 11.6 118 35-170 17-136 (140)
476 cd02678 MIT_VPS4 MIT: domain c 61.8 25 0.00053 19.9 4.0 15 104-118 19-33 (75)
477 PF12583 TPPII_N: Tripeptidyl 61.7 40 0.00088 21.7 5.5 37 134-170 85-121 (139)
478 PF14689 SPOB_a: Sensor_kinase 61.7 24 0.00053 19.1 5.4 28 125-152 23-50 (62)
479 KOG0687 26S proteasome regulat 60.9 72 0.0016 24.3 9.9 95 91-185 104-207 (393)
480 KOG2758 Translation initiation 60.4 73 0.0016 24.2 8.8 76 77-153 115-195 (432)
481 PF04348 LppC: LppC putative l 60.2 2.9 6.3E-05 33.8 0.0 98 52-149 19-122 (536)
482 KOG4056 Translocase of outer m 59.7 29 0.00064 22.4 4.3 32 62-93 86-117 (143)
483 PF13934 ELYS: Nuclear pore co 59.7 61 0.0013 23.0 11.5 89 59-153 80-168 (226)
484 COG2015 Alkyl sulfatase and re 59.4 36 0.00078 27.3 5.6 44 62-105 457-500 (655)
485 KOG4056 Translocase of outer m 59.3 38 0.00081 22.0 4.7 33 95-127 85-117 (143)
486 KOG2561 Adaptor protein NUB1, 59.1 26 0.00056 27.6 4.7 92 29-120 167-296 (568)
487 TIGR00985 3a0801s04tom mitocho 59.0 35 0.00076 22.5 4.8 32 95-126 94-126 (148)
488 COG4941 Predicted RNA polymera 58.7 81 0.0018 24.2 7.7 68 66-133 338-407 (415)
489 TIGR00985 3a0801s04tom mitocho 58.1 32 0.00069 22.6 4.5 33 61-93 94-127 (148)
490 cd02680 MIT_calpain7_2 MIT: do 58.0 26 0.00056 20.0 3.6 17 104-120 19-35 (75)
491 cd00280 TRFH Telomeric Repeat 57.4 61 0.0013 22.4 8.9 75 73-148 85-167 (200)
492 KOG4521 Nuclear pore complex, 56.9 1.6E+02 0.0034 26.9 9.8 119 57-179 920-1074(1480)
493 COG4259 Uncharacterized protei 56.6 34 0.00075 20.9 4.0 36 91-126 72-107 (121)
494 KOG4279 Serine/threonine prote 56.1 47 0.001 28.3 5.9 129 38-167 256-408 (1226)
495 cd02684 MIT_2 MIT: domain cont 55.7 37 0.00079 19.3 4.0 16 104-119 19-34 (75)
496 PF12921 ATP13: Mitochondrial 55.5 52 0.0011 20.9 8.3 42 125-166 52-95 (126)
497 KOG4563 Cell cycle-regulated h 55.0 32 0.0007 26.3 4.6 48 29-76 45-102 (400)
498 PF15297 CKAP2_C: Cytoskeleton 54.7 96 0.0021 23.8 8.4 68 103-170 114-186 (353)
499 smart00745 MIT Microtubule Int 53.5 39 0.00086 19.0 5.5 13 104-116 21-33 (77)
500 PF04840 Vps16_C: Vps16, C-ter 53.4 96 0.0021 23.4 8.7 101 35-150 187-287 (319)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.8e-24 Score=161.22 Aligned_cols=172 Identities=21% Similarity=0.225 Sum_probs=124.1
Q ss_pred cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105 14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 91 (199)
+.+...|++|... -++|+++-..|+..+|...|.++ ..|..+++++++|+++..+|.+++|...|.++++..|+.+
T Consensus 311 ral~~~P~F~~Ay--~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a 388 (966)
T KOG4626|consen 311 RALELQPNFPDAY--NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA 388 (966)
T ss_pred HHHhcCCCchHHH--hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh
Confidence 4455555555332 35566777777777777777776 6677777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
.++.+||.+|.++|++++|+.+|+.++++.|...+++.++|..|..+|+.+.|+++|.+++.++|..++++.+|+.+|..
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred Hhhhhhhhhhcccccc
Q 029105 172 VKRRKHLHLSGLSNDA 187 (199)
Q Consensus 172 ~~~~~~a~~~~~~~~~ 187 (199)
.|+..+|..++..+..
T Consensus 469 sGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALK 484 (966)
T ss_pred cCCcHHHHHHHHHHHc
Confidence 7777777766655544
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.5e-24 Score=160.39 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=104.8
Q ss_pred cccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH
Q 029105 16 LQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVL 93 (199)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 93 (199)
+...|+++ ....++|+++-..+.++.|+..|.++ ..|+.+.++-++|.+|+.+|..+.|+.+|++++++.|+.+++
T Consensus 245 vkldP~f~--dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 245 VKLDPNFL--DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred hcCCCcch--HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 34444433 33456677777777777777766666 556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
+.++|..+-..|+..+|..+|.+++.+.|+++++.++||.++.++|.+++|...|++++...|+...+..+|+.+|...|
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhhhhhhhcc
Q 029105 174 RRKHLHLSGL 183 (199)
Q Consensus 174 ~~~~a~~~~~ 183 (199)
++++|...+.
T Consensus 403 nl~~Ai~~Yk 412 (966)
T KOG4626|consen 403 NLDDAIMCYK 412 (966)
T ss_pred cHHHHHHHHH
Confidence 6666554443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.5e-21 Score=155.13 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=146.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ .+|.....+..+|.++...|++++|+..|++++..+|+++.+++.+|.+++..|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45688888999999999999988 7888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|...+..+.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887665544
Q ss_pred c
Q 029105 187 A 187 (199)
Q Consensus 187 ~ 187 (199)
+
T Consensus 495 ~ 495 (615)
T TIGR00990 495 E 495 (615)
T ss_pred h
Confidence 3
No 4
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.4e-22 Score=150.64 Aligned_cols=160 Identities=18% Similarity=0.132 Sum_probs=139.2
Q ss_pred hHhhhcchhhhhccchhhhhhccccc------------------------------------chhhHHHHHHHHhhHHHh
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF------------------------------------DAKQLALSFEAQGNNLAE 69 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 69 (199)
....++|..|+.+++|++|...|+.+ .+|..|+.|..+|+|+-.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 44467899999999999999887654 467788899999999999
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
+++++.|+++|++++.++|.+..+|..+|.=+.....++.|..+|+.|+..+|.+..+|+.+|.+|.++++++.|+-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 99999999999999999999998888888888888889999999999999999988899999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 150 RALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 150 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
+|+.++|.+......+|.++.++|+.++|...+-.+
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 999999988888888888888888888877654433
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.86 E-value=3.3e-20 Score=120.83 Aligned_cols=114 Identities=22% Similarity=0.194 Sum_probs=110.0
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
++++|+..|++++.+.|+++..+.+++.+...++
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887654
No 6
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-20 Score=137.33 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=152.2
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
-.|+.|.-.++.++|+..|+++ .+|....+|..+|.-|....+...|++.|++|++++|.+..+|+.+|+.|--++-.
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence 3477788888999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
--|+-+|++|+...|+++..|..+|.||.++++.++|+++|.+++.....+..++..||.+|.++++..+|...+..-.+
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887665555
Q ss_pred hhhhcCC
Q 029105 188 NRFVVGD 194 (199)
Q Consensus 188 ~~~~~~~ 194 (199)
.....|.
T Consensus 495 ~~~~eg~ 501 (559)
T KOG1155|consen 495 VSELEGE 501 (559)
T ss_pred HHHhhcc
Confidence 4433333
No 7
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=1.8e-20 Score=125.85 Aligned_cols=152 Identities=18% Similarity=0.128 Sum_probs=143.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|.-|+..|++..|...++++ .+|....++..++.+|...|+.+.|.+.|+++++++|++.+++++.|..++.+|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 57899999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 107 AWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 107 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
+++|.+.|++++.. .|..+.++.++|.|..+.|+++.|...|+++++++|+++.....++..+...|++-+|..
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999975 345677899999999999999999999999999999999999999999999999988754
No 8
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-20 Score=142.80 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=152.2
Q ss_pred ccccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105 13 KRSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN 90 (199)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 90 (199)
++++...|++.+.. ..+|.-+....+++.|...|+.+ .+|.+-.+|+.+|.+|.++++++.|.-.|++|+.++|.+
T Consensus 445 ~RAiQldp~faYay--TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n 522 (638)
T KOG1126|consen 445 KRAIQLDPRFAYAY--TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN 522 (638)
T ss_pred HHhhccCCccchhh--hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc
Confidence 36667777655443 55788888889999999999988 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
......+|.++.+.|+.++|++.+++|+.++|.++...+..|.+++.++++++|+..+++.-++.|++..++..+|.+|.
T Consensus 523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 523 SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhcc
Q 029105 171 LVKRRKHLHLSGL 183 (199)
Q Consensus 171 ~~~~~~~a~~~~~ 183 (199)
++|+.+.|...+.
T Consensus 603 ~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 603 RLGNTDLALLHFS 615 (638)
T ss_pred HHccchHHHHhhH
Confidence 9999998876543
No 9
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=6.3e-20 Score=127.80 Aligned_cols=122 Identities=30% Similarity=0.500 Sum_probs=117.2
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
..++.+..-|+-++..++|.+|+..|.+||.++|.++.+|.+.+.+|.++|.++.|++.++.++.+||.+..+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105 135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 176 (199)
|..+|++++|+..|++++.++|++..++.+|..+-..+++..
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999998888766
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.1e-19 Score=144.52 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=140.3
Q ss_pred cchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105 39 EKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113 (199)
Q Consensus 39 ~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (199)
+.|++|+..|.++ ..|....++..+|.+++..|++++|+..|++++.++|.+...+..+|.++...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788999988877 25788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+++++..+|+++.+++.+|.++...|++++|+.+|++++.++|++..++.++|.++..+|++++|...+.....
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887665543
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=3.7e-19 Score=124.79 Aligned_cols=160 Identities=20% Similarity=0.144 Sum_probs=145.9
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
.....+|..+...|++++|+..+.++ ..|.+..++..+|.++...|++++|+..+++++...|.+..++.++|.++..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33467799999999999999999887 6788889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 104 LGDAWNALKAATRATELE--QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
.|++++|+..+++++... |.....+..+|.++...|++++|+..+.+++..+|+++.++..++.++...|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999853 556778999999999999999999999999999999999999999999999999998775
Q ss_pred cccc
Q 029105 182 GLSN 185 (199)
Q Consensus 182 ~~~~ 185 (199)
....
T Consensus 192 ~~~~ 195 (234)
T TIGR02521 192 LERY 195 (234)
T ss_pred HHHH
Confidence 5443
No 12
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=9.8e-20 Score=136.21 Aligned_cols=165 Identities=17% Similarity=0.109 Sum_probs=147.6
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHH-------
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK------- 97 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l------- 97 (199)
..+..|..+++.|+..+|.-.|+.+ .+|.++++|..+|.+....++-..|+..++++++++|++..++..|
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 3466789999999999999999888 8999999999999999999999999999999999888876555554
Q ss_pred ----------------------------------------------------------------------HHHHHHcCCH
Q 029105 98 ----------------------------------------------------------------------AQVLLELGDA 107 (199)
Q Consensus 98 ----------------------------------------------------------------------a~~~~~~~~~ 107 (199)
|.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 4444445559
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
++|+.+|+.||...|++...|..||-.+..-.+..+|+..|.+|+++.|.+..+++++|.+++.+|.|++|.+.+++++.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhh
Q 029105 188 NRFV 191 (199)
Q Consensus 188 ~~~~ 191 (199)
..-.
T Consensus 527 mq~k 530 (579)
T KOG1125|consen 527 MQRK 530 (579)
T ss_pred hhhc
Confidence 5433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=4.4e-19 Score=145.22 Aligned_cols=160 Identities=14% Similarity=0.018 Sum_probs=130.6
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
....|.++...|++++|+..+.++ ..|........++......|++++|+..|+++++.+|+ +.++.++|.++.+.|
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 345577777778888777777766 44555555556666666678888888888888888886 888888898888999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++++|+..+++++.++|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|...+..+
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999888888999988888899999999999999999988888999999999889888888766655
Q ss_pred cch
Q 029105 186 DAN 188 (199)
Q Consensus 186 ~~~ 188 (199)
.+.
T Consensus 704 l~l 706 (987)
T PRK09782 704 IDD 706 (987)
T ss_pred Hhc
Confidence 544
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=4.3e-19 Score=139.18 Aligned_cols=146 Identities=15% Similarity=-0.008 Sum_probs=135.0
Q ss_pred cchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029105 39 EKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR 116 (199)
Q Consensus 39 ~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (199)
+++++|+..+.++ .+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4578899999888 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 117 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
+++++|.++..+..++.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+..
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999998887777878888999999999999999875 78899999999999999999999886543
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=7.2e-19 Score=140.13 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=122.1
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHH----HHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFRE----ALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
.|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++ |+..|++++.++|+++.++..+|.++...
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 356667777777777777776 667777778888888888888775 67888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
|++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|++......++.++...|++++|...+..
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888887776666677778888888887776554
Q ss_pred ccc
Q 029105 185 NDA 187 (199)
Q Consensus 185 ~~~ 187 (199)
..+
T Consensus 378 al~ 380 (656)
T PRK15174 378 YIQ 380 (656)
T ss_pred HHH
Confidence 443
No 16
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-19 Score=131.52 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=144.2
Q ss_pred CCCCCCchHhhhcchhhhhccchhhhhhccccc--chhh----------------------------------HHHHHHH
Q 029105 19 FPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQ----------------------------------LALSFEA 62 (199)
Q Consensus 19 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~----------------------------------~~~~~~~ 62 (199)
+|+.++-. ...|.+.+...++++|+..|+.. .+|- .++....
T Consensus 258 f~~~~~i~--~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCi 335 (559)
T KOG1155|consen 258 FPNSMYIK--TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCI 335 (559)
T ss_pred CCccHHHH--HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceee
Confidence 45544432 34578888889999999988776 2221 1122234
Q ss_pred HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH
Q 029105 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD 142 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 142 (199)
+|+-|...++.++|+.+|+++++++|....+|..+|.=|.++++...|++.|++|+.++|.+..+|+.+|++|..++...
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 56667777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
-|+-+|++++...|+++..|..||.||.++++.++|.+.+..+..
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998877654
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=1.1e-18 Score=136.83 Aligned_cols=147 Identities=10% Similarity=-0.058 Sum_probs=132.7
Q ss_pred cchhhhhhccccc--chhhHHHHHHHHhhHHHhc---------ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 39 EKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED---------GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 39 ~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
+.+++|+..|.++ .+|+++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4567899999888 8899999999999887643 4489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+...++.++...|++++|...+...
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887777777788889999887765443
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=2.1e-18 Score=125.38 Aligned_cols=156 Identities=12% Similarity=-0.040 Sum_probs=100.4
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
.++|.++...|++++|+..|.++ .+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.++...|+
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 45677777777777777777766 6677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------------------------------
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI-------------------------------- 154 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------------------------------- 154 (199)
+++|++.++++++++|+++... ....+....+++++|+..+.+++..
T Consensus 148 ~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 226 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGAT 226 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCC
Confidence 7777777777777777765211 1111223344555555555433321
Q ss_pred -----CCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 155 -----KPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 155 -----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
.|...+++.++|.++...|++++|...+..+
T Consensus 227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1222345666677777777777766655443
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=3.9e-18 Score=139.71 Aligned_cols=150 Identities=12% Similarity=-0.017 Sum_probs=140.2
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 110 (199)
......|++++|+..+.++ ..|. +.++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3444559999999999998 6676 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+..++++++++|+++.+++++|.++..+|++++|+..|++++.++|++..+....+.+.....+++.+.+.+-
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888776543
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=7.8e-18 Score=122.45 Aligned_cols=130 Identities=18% Similarity=0.050 Sum_probs=113.8
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
..+..+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++.++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
|.++...|++++|+..|+++++.+|+++.....+ .+....+++++|...+
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence 9999999999999999999999999987422211 2233455666666554
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.79 E-value=1.1e-17 Score=107.58 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=101.3
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
++..+.++.+|..++..|++++|...|+.+..++|.+...|++||.|+..+|+|.+|+..|.+++.++|++|.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
|++..|+.+.|.+.|+.++......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999887443
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=8.4e-19 Score=126.91 Aligned_cols=156 Identities=23% Similarity=0.216 Sum_probs=119.1
Q ss_pred chhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 32 GLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
..++...++++++...+..+ ..+.++..+..+|.++...|++++|+..|+++++.+|+++.+...++.++...|++
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence 45667778888888777765 33567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+++...+.......|+++..+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|.........
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999998888888999999999999999999999999999999999999999999999999999999999887766544
No 23
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.79 E-value=6.6e-18 Score=115.56 Aligned_cols=122 Identities=20% Similarity=0.210 Sum_probs=91.9
Q ss_pred cchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHH-HHcCC--HHHHHHH
Q 029105 39 EKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVL-LELGD--AWNALKA 113 (199)
Q Consensus 39 ~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~~~--~~~A~~~ 113 (199)
++.++++..+... .+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|...
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3345555555554 66777788888888888888888888888888888888888888888764 56666 4788888
Q ss_pred HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
++++++.+|+++.+++.+|.+++..|++++|+.+|+++++..|.+..
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 88888888888888888888888888888888888888877776543
No 24
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.78 E-value=7.2e-18 Score=119.09 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=137.1
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhh---HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH---HHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQ---LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV---LHEQK 97 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~l 97 (199)
...+..|..++..|++++|+..+..+ ..|. ...+++.+|.+++..|++++|+..|+++++..|+++. +++.+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 34477899999999999999999887 3443 4478899999999999999999999999999998875 78999
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHhhcccccHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 029105 98 AQVLLEL--------GDAWNALKAATRATELEQSWAEAW-----------------ITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 98 a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
|.++... |++++|+..+++++..+|++..++ ..+|.++...|++.+|+..|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999886 889999999999999999876442 467888999999999999999999
Q ss_pred hcCCCc---HHHHHHHHHHHHHHhhhhhhhhh
Q 029105 153 AIKPDS---EEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 153 ~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
...|+. +.++..++.++..+|++++|...
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 997764 58999999999999999998874
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.8e-17 Score=116.19 Aligned_cols=155 Identities=17% Similarity=0.106 Sum_probs=141.8
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--CCcHHHHHHHHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--PENAVLHEQKAQVLL 102 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~ 102 (199)
....+|.++...|++++|+..+.++ ..|.+..++..+|.++...|++++|+..+++++... +.....+..+|.++.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 3356789999999999999999988 567778899999999999999999999999999853 455678999999999
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
..|++++|...+.+++..+|+++.++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|...
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987653
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.77 E-value=3.5e-17 Score=105.85 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=107.7
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+|.+..+...+|..++..|++++|...+++++..+|.++.++..+|.++..+|++++|+..+++++..+|+++..++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
|.++...|++++|+..|+++++.+|++.......
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999999999999999999999987754433
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=2.1e-17 Score=131.87 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=132.4
Q ss_pred hhhhccchhhhhhccccc--chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH-
Q 029105 34 SGAELEKNDDNNEHQEPF--DAK-QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN- 109 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~- 109 (199)
.+...|++++|+..+..+ ..| ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 356667777777766654 211 2233345567888999999999999999999999999999999999999999986
Q ss_pred ---HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 110 ---ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 110 ---A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
|+..|++++.++|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.++...|++++|...+....
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987664443
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=1.9e-17 Score=136.30 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=95.2
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.++.++...|++++|+..+... ..|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 3444455555555555554444 4455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
.+|+..+++++...|+++..+..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++|....
T Consensus 820 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666666666666666666666666666666666666666666666666666666666666666666665543
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=2.8e-17 Score=110.72 Aligned_cols=134 Identities=18% Similarity=0.135 Sum_probs=123.7
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
.-..+...+|.-|+..|++..|..-++++++.+|++..+|..++.+|...|+.+.|-+.|++++.++|++.+++.+.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 135 QLNFGEPDKAIESFERALAI--KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
++.+|++++|...|++++.. .|.....+.|+|.|..+.|+.+.|...+.++.+.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 99999999999999999875 3455788999999999999999998877655543
No 30
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.76 E-value=2e-17 Score=131.15 Aligned_cols=137 Identities=12% Similarity=-0.019 Sum_probs=131.1
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
..|.++.++..+|.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
|.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|...+.++.+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887766543
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.75 E-value=5.9e-18 Score=110.24 Aligned_cols=119 Identities=14% Similarity=-0.036 Sum_probs=108.6
Q ss_pred ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
.+...|+. ....|..+...|++++|+..|..+ .+|.+..++..+|.++...|++++|+..|++++.++|+++.
T Consensus 19 al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 19 LLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 44455542 345789999999999999999998 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
+++++|.++...|++++|+..|++++.+.|+++..+.++|.+...+
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876643
No 32
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.75 E-value=8.3e-17 Score=119.64 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=110.4
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
+...|..++..|+|++|+..|.+++.++|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
++++|+..|++++.++|+++.+...++.|...+..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999777754
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.74 E-value=6.4e-17 Score=122.29 Aligned_cols=151 Identities=18% Similarity=0.099 Sum_probs=75.3
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLL 102 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~ 102 (199)
.+|..+...|++++|+..|.++ ..|....++..++.++...|++++|+..+++++...|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 3345555555555555555444 2334444455555555555555555555555554444331 13344455555
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHhhhhhhhh
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-EEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
..|++++|+..++++++.+|++..+++.+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++|..
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555554443 2334445555555555555444
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.74 E-value=5.2e-17 Score=111.14 Aligned_cols=119 Identities=17% Similarity=0.064 Sum_probs=110.6
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH-HhcCC--hHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ-LNFGE--PDKAIE 146 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~--~~~A~~ 146 (199)
.++.++++..+++++..+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 147 SFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 147 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.++++++.+|+++.++..+|.++...|++++|........+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998866655443
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=8.7e-17 Score=135.69 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=138.5
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHH--------
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ-------- 99 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~-------- 99 (199)
..|.++...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 4477888999999999999998 788889999999999999999999999999999999998876655544
Q ss_pred ----------------------------------HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105 100 ----------------------------------VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 100 ----------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 145 (199)
++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 146 ESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
..+++++..+|+++.++..++..+...++.++|....
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999998888888888886644
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.73 E-value=2.5e-16 Score=129.70 Aligned_cols=152 Identities=16% Similarity=0.099 Sum_probs=119.3
Q ss_pred cchhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
+|.++...|++++|+..+... ..+....++..+|.++...|++++|...|++++..+|++..++..+|.++...|++
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 175 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH
Confidence 344444455555555544433 34455667778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..++.++...|++++|....
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 250 (899)
T TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHA 250 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888876544
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=8.1e-17 Score=135.89 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=135.3
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH--------------H
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV--------------L 93 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------------~ 93 (199)
..|..+...|++++|+..|.++ ..|.++.++..+|.+++..|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3478889999999999999988 78889999999999999999999999999999999997642 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
...+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++.. +
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~-~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ-Q 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-c
Confidence 235588899999999999999999999999999999999999999999999999999999999999999999998854 4
Q ss_pred hhhhhhh
Q 029105 174 RRKHLHL 180 (199)
Q Consensus 174 ~~~~a~~ 180 (199)
+.++|..
T Consensus 433 ~~~~A~~ 439 (1157)
T PRK11447 433 SPEKALA 439 (1157)
T ss_pred CHHHHHH
Confidence 5666654
No 38
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.73 E-value=3.2e-16 Score=107.55 Aligned_cols=155 Identities=18% Similarity=0.085 Sum_probs=139.6
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
+.....+...|+-+.+.....+. .+|.+...+..+|...+..|+|..|+..++++..+.|++..+|..+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 44556666777777666666664 6777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+++|...|.+++++.|+.+.+..++|..+.-.|+++.|...+..+...-+.+..+..+|+.+....|++++|....-
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999989899999999999999999999887543
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.73 E-value=2.7e-16 Score=118.86 Aligned_cols=159 Identities=14% Similarity=0.042 Sum_probs=135.5
Q ss_pred hhhcchhhhhccchhhhhhccccc-ch-----hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF-DA-----KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVL 101 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 101 (199)
...+|..+...|++++|+..+..+ .. ......+..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 151 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIY 151 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 356788889999999999888766 11 123467888999999999999999999999999998889999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcccccH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105 102 LELGDAWNALKAATRATELEQSWA-----EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176 (199)
Q Consensus 102 ~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 176 (199)
...|++++|+..+++++...|.+. ..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|+++
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 231 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYA 231 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999998877643 356678999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccc
Q 029105 177 HLHLSGLSND 186 (199)
Q Consensus 177 ~a~~~~~~~~ 186 (199)
+|...+....
T Consensus 232 ~A~~~~~~~~ 241 (389)
T PRK11788 232 AAIEALERVE 241 (389)
T ss_pred HHHHHHHHHH
Confidence 9877654443
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.5e-16 Score=117.34 Aligned_cols=142 Identities=26% Similarity=0.358 Sum_probs=126.9
Q ss_pred cchhhhhccchhhhhhccccc----------------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF----------------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEA 82 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 82 (199)
+|..+...++++.++..|.++ .+|..+..-...|+.++..|+|..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 455666666666666665544 4455556667789999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105 83 ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
+|..+|+++.+|.++|.||..+|.+..|+..++.+++++|+...+|...|.++..+.+|+.|++.|+++++.+|.+.++.
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 029105 163 DDRQTALHLV 172 (199)
Q Consensus 163 ~~l~~~~~~~ 172 (199)
..+..|...+
T Consensus 464 ~~~~rc~~a~ 473 (539)
T KOG0548|consen 464 DGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.6e-16 Score=117.43 Aligned_cols=155 Identities=15% Similarity=0.075 Sum_probs=138.2
Q ss_pred chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN 109 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 109 (199)
|.-++-.|++-.|...+..+ .+|.....+..+|.+|....+.++-...|..+..++|.++++|+.+|.+++-.++|++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 56666677777888887777 6666666688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
|+..|++++.++|++.-++..++.+.++++++++++..|+.+.+.-|+.++.+...+.++...+++++|.+.+-.+.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887664443
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=5.5e-16 Score=125.95 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=140.0
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 108 (199)
.-.+....|++++|+..+.++ ..|..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 346778889999999999888 367778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+|+..+++++..+|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|....
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999998888887766544
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4e-16 Score=115.31 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=124.0
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
+..|.+++-.+++++|+..|+++ .+|+++-++.+++.+.+++++++++...|+.+....|+.+.++...|.++..+++
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 44577777778888888888877 7788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhcccc------cHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 107 AWNALKAATRATELEQS------WAEAWITLGRAQLN-FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
++.|++.|.+++++.|. ++..+.+.|.+..+ .+++..|+..++++++++|....++..+|.+..++|+.++|.
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888888877 66666666654433 477888888888888888888889999999999999999987
Q ss_pred hhcc
Q 029105 180 LSGL 183 (199)
Q Consensus 180 ~~~~ 183 (199)
+.+-
T Consensus 558 elFE 561 (606)
T KOG0547|consen 558 ELFE 561 (606)
T ss_pred HHHH
Confidence 7553
No 44
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1.3e-15 Score=111.02 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=129.0
Q ss_pred hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH--H
Q 029105 34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA--W 108 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~--~ 108 (199)
++...+.+++|+..+.++ .+|.+..+|..++.++...| ++++++..+.+++..+|++..+|..++.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 345567888899888888 79999999999999999998 689999999999999999999999999999999874 7
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
+++.++.+++..+|++..+|..+|.++...|++++|++++.++++.+|.+..+|...+.+...+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999999999988765
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.68 E-value=1.5e-15 Score=120.66 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=127.9
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
....+|.+..+.|.+++|...+..+ ..|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 3467899999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
|++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++....+-...
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999999999999999999999999999987654443
No 46
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.5e-15 Score=109.11 Aligned_cols=133 Identities=24% Similarity=0.305 Sum_probs=118.5
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
.+......|+.+++.|+|..|...|++++..-... ..++.+++.|+.++++|.+|++.+.++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 35566778999999999999999999988764321 378899999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 121 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
+|+|..++|..|.++..+|+++.|+..|+++++++|.|..+...|..+..+..++.+..+..++.+..
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988888776666655543
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.67 E-value=1.1e-15 Score=98.86 Aligned_cols=111 Identities=17% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 78 GKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
..+++++..+|++......+|.++...|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 158 SEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 158 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
++..+..+|.++...|++++|...+....+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998876555443
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.1e-15 Score=106.33 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=153.3
Q ss_pred cccccCCCCCCchHh---hhcchhhhhccchhhhhhccccc-chhh-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105 14 RSLQQFPNLPFDQQD---QEHGLSGAELEKNDDNNEHQEPF-DAKQ-LALSFEAQGNNLAEDGKFREALGKWEAALNLRP 88 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 88 (199)
..+-..|++++.+.. .++|..|+..|-++.|...|... +.|. -..++-.+..+|....+|++|++..++...+.+
T Consensus 93 Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 93 QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 456677888887655 68899999999999999999988 4344 457888999999999999999999999999888
Q ss_pred Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-HHHH
Q 029105 89 EN-----AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-EEAR 162 (199)
Q Consensus 89 ~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 162 (199)
.. +.+++.++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 66 57888999999999999999999999999999999999999999999999999999999999999987 6788
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccc
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
-.|..||..+|+.++......+.++
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8999999999999987765544443
No 49
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.66 E-value=1.6e-15 Score=97.63 Aligned_cols=107 Identities=16% Similarity=-0.003 Sum_probs=100.2
Q ss_pred HHccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 83 ALNLR-PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 83 ~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
+..+. ++.....+.+|..++..|++++|...|+-+..++|.+...|++||.|+..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 44566 77788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 162 RDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 162 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
..++|.|+...|+.+.|...+..+...+
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887776655
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.3e-16 Score=112.83 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=141.0
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
..+.++..++++++|.+.|..+ .+|.+.++...+|.-|+-.++.+-|+.+|++.+.+.-.+++.+.++|.|.+..+++
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 4567888899999999999888 78888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 108 WNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 108 ~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
+-++..|++++.... .-.++|+++|.+....|++.-|..+|+-++..+|++.+++.+|+.+..+.|+.++|.....+
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999999997643 35679999999999999999999999999999999999999999999999999998764443
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=6.1e-15 Score=115.71 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=135.8
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
...+..++.++..|++++|+..+..+ .+|..+.+++.+|.+|.++|+.+++..++-.|..++|.+...|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 34456688888899999999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHhhhhhh
Q 029105 104 LGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-----EEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~a 178 (199)
+|.+++|.-+|.+||+.+|.+.+..+..+.+|.++|+...|+..|.+++...|.. .......+..+...++.+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999932 12234445556666655554
Q ss_pred hh
Q 029105 179 HL 180 (199)
Q Consensus 179 ~~ 180 (199)
..
T Consensus 300 ~~ 301 (895)
T KOG2076|consen 300 AK 301 (895)
T ss_pred HH
Confidence 44
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=8.3e-16 Score=115.48 Aligned_cols=127 Identities=23% Similarity=0.293 Sum_probs=116.8
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
.++++...+|.+|...|+|++|+.+|+.+|...|++...|..||.++..-.+..+|+..|++|+++.|....+++++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 135 QLNFGEPDKAIESFERALAIKPD----------SEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
++.+|.|++|..+|-.+|.+.+. +..+|..|-.++..+++.+-+..+
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99999999999999999988654 135788888888888888754443
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.5e-15 Score=113.87 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=128.3
Q ss_pred cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHH-----------------------------
Q 029105 14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEA----------------------------- 62 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~----------------------------- 62 (199)
+.+..+|+.|... +-.|.-|+..|++.+|...|.++ .+|..+.+|..
T Consensus 303 ~LV~~yP~~a~sW--~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 303 KLVDLYPSKALSW--FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HHHHhCCCCCcch--hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 3455566655433 23456666666666666666665 44444444444
Q ss_pred -----HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------cccHHHHHH
Q 029105 63 -----QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-------QSWAEAWIT 130 (199)
Q Consensus 63 -----~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~ 130 (199)
+|.-|.+.+++..|..+|.+++.+.|.++-....+|.+.+..+.|.+|+.+|+.++..- +.....+.+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 45555556666667777777777888888888888988888889999999998888432 224556899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+|.++.+++.+++|+..|++++.+.|.++.++..+|.++..+|+.+.|...+..+..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887665543
No 54
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=5.3e-15 Score=120.28 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=124.9
Q ss_pred cchhhhhccchhhhhhccccc--chhhH----HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC---------------
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQL----ALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--------------- 89 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--------------- 89 (199)
+|.++...|++++|+..|.++ ..|.. ......++.++...|++++|+..++++....|.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 467778888888888887766 33322 345566677778888888888888888877662
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|++..++..++.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 13466788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhccc
Q 029105 170 HLVKRRKHLHLSGLS 184 (199)
Q Consensus 170 ~~~~~~~~a~~~~~~ 184 (199)
...|++++|....-.
T Consensus 438 l~~~~~~~A~~~~~~ 452 (765)
T PRK10049 438 LDLQEWRQMDVLTDD 452 (765)
T ss_pred HHhCCHHHHHHHHHH
Confidence 999999988775533
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.4e-15 Score=110.14 Aligned_cols=152 Identities=20% Similarity=0.150 Sum_probs=103.8
Q ss_pred hhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105 36 AELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--PENAVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 112 (199)
...+++++|+..+... ..+.++..+.....++...++++++...++++.... +.++.+|..+|.++.+.|++++|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677778887777665 334456677777888899999999999999977654 6778999999999999999999999
Q ss_pred HHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 113 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+++++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|++++|...+.....
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999999999999999999999999999999999888888899999999999999999999999887665443
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=3.9e-15 Score=105.18 Aligned_cols=133 Identities=19% Similarity=0.105 Sum_probs=116.6
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---H
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---A 127 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 127 (199)
+..+..++.+|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45678999999999999999999999999999999876 67899999999999999999999999999998776 6
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHHhhhhhhhhhc
Q 029105 128 WITLGRAQLNF--------GEPDKAIESFERALAIKPDSEEAR-----------------DDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 128 ~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~ 182 (199)
++.+|.++... |++++|+..|++++..+|++..++ ..++.++...|++.+|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 89999999876 889999999999999999986542 35677888889998887765
Q ss_pred cccc
Q 029105 183 LSND 186 (199)
Q Consensus 183 ~~~~ 186 (199)
....
T Consensus 190 ~~al 193 (235)
T TIGR03302 190 ETVV 193 (235)
T ss_pred HHHH
Confidence 5443
No 57
>PLN02789 farnesyltranstransferase
Probab=99.64 E-value=5.4e-15 Score=107.90 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=128.4
Q ss_pred hhcchhhhhcc-chhhhhhccccc--chhhHHHHHHHHhhHHHhcccH--HHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELE-KNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKF--REALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 29 ~~~g~~~~~~~-~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
...|.++...| ++++++..+.++ .+|.+..+|..++.++...|+. ++++.++.++++.+|.+..+|..++.++..
T Consensus 75 ~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 75 HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35577888887 579999998888 7899999999999999888874 788999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 104 LGDAWNALKAATRATELEQSWAEAWITLGRAQLNF---GEP----DKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
.|+++++++++.++|+.+|.+..+|..++.+.... |.+ ++++.+..+++..+|++..+|..++.++..
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 99999999999999999999999999999998776 333 468888889999999999999999999987
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.64 E-value=7.3e-15 Score=100.92 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=128.2
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+|++..+ ..++..+...|+-+.+.....++...+|.+......+|...+..|++.+|+..++++..+.|+++.+|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 67888888 99999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
|.+|.+.|++++|...|.+++++.|+++.+..|++..+...|+++.|....+++..
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987766543
No 59
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=106.02 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=113.3
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
-..|+.+++.++|.+|+..|.++ .+|.++..+.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|+
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 45699999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH---HHHHHHHHHHh
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD---KAIESFERALA 153 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~ 153 (199)
+.+|++.|+++++++|++...+.+|..+-..+++.. .+...++-+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ 214 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGL 214 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhh
Confidence 999999999999999999999999999888877766 44444444333
No 60
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.63 E-value=2.3e-14 Score=90.42 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=98.3
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWIT 130 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 130 (199)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999999876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
+|.++..+|++++|+..+++++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876543
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.8e-15 Score=108.11 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=140.3
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------------HHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------------VLHEQ 96 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~ 96 (199)
.+.++.-.+++++|....... .++.+..+++..|.+++..++.+.|+.+|++++.++|++. ..+..
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 367777788999988876655 7888999999999999999999999999999999999874 45677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhccccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQSW----AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
.|.-.++.|+|..|.++|..+|.++|++ ...+.++|.+...+|+..+|+.....++.++|....++...|.|+..+
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999974 567889999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccccch
Q 029105 173 KRRKHLHLSGLSNDAN 188 (199)
Q Consensus 173 ~~~~~a~~~~~~~~~~ 188 (199)
+++++|.+.+..+++.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999998877666553
No 62
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.61 E-value=3.1e-14 Score=105.47 Aligned_cols=139 Identities=21% Similarity=0.236 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.|....+++..+..++..|++++|+..++..+...|+|+.++...+.++.+.++..+|.+.+++++.++|+.+..+.++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD 194 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 194 (199)
.+++..|++.+|+..+...+..+|+++..|..|+.+|..+|+..++... ..|..+..|+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A---~AE~~~~~G~ 440 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA---RAEGYALAGR 440 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH---HHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998887663 3444444444
No 63
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.6e-14 Score=96.57 Aligned_cols=142 Identities=16% Similarity=0.072 Sum_probs=110.6
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 108 (199)
.|..+...|.+++|++.|... ++|.+..++...-.+...+|+-.+|++.+..-++..+.|..+|..++.+|+..|+|.
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 366777778888888888777 677777777777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFG---EPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
+|.-++++++-+.|.++..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.|...+
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 8888888888888888888888888777766 345678888888888887777766665554443
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.9e-15 Score=105.47 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=131.9
Q ss_pred hhcchhhhhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.++|.+|++.|-+.+|...++.. ..-..++.+..++.+|.+..+...|+..|.+.++..|.+.......+.++..++++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 56799999999999999988877 33446777888888999999999999999999999999888888889999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++|++.|+.+++.+|.+.++.--+|.-|+.-++.+-|+.+|++.+++.-.+++.+.++|.|+.--++++-+..++.++
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 999999999999988888888888888888888888888888888888888888888888888888877766655443
No 65
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.59 E-value=1.2e-13 Score=92.92 Aligned_cols=107 Identities=24% Similarity=0.321 Sum_probs=97.2
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
..+..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|+++.++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456778889999999999999999999999999887654 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--------------hHHHHHHHHHHHhcCCCc
Q 029105 129 ITLGRAQLNFGE--------------PDKAIESFERALAIKPDS 158 (199)
Q Consensus 129 ~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 158 (199)
..+|.++...|+ +++|++.+++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999887 577888888888888876
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.59 E-value=3.6e-14 Score=108.31 Aligned_cols=166 Identities=15% Similarity=0.041 Sum_probs=140.0
Q ss_pred hHhhhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------C
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------R 87 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~ 87 (199)
.....++..+...|+|++|+..+..+ ..|.-...+..+|..|..++++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33456899999999999999998877 35666666677999999999999999999999976 3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----
Q 029105 88 PENAVLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIK---- 155 (199)
Q Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---- 155 (199)
|.-+.++.+||..|...|++.+|..++++|+.+. |.-+..+.+++.++..++++++|+.++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 4446889999999999999999999999999873 3345568889999999999999999999999873
Q ss_pred -C---CcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105 156 -P---DSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFV 191 (199)
Q Consensus 156 -p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (199)
+ .-+..+.++|.++..+|++.+|.+.+.++..+.-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2 33567999999999999999999988877766433
No 67
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.59 E-value=1.1e-14 Score=82.94 Aligned_cols=67 Identities=36% Similarity=0.517 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKP 156 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p 156 (199)
++..|..+|.+++..|++++|+..|++++.++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 46666666666666655
No 68
>PRK15331 chaperone protein SicA; Provisional
Probab=99.59 E-value=1.1e-13 Score=89.55 Aligned_cols=111 Identities=17% Similarity=0.051 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
..++..+..+..|.-++..|++++|...|+-+...+|.++..++.||.|+...++|++|+..|..+..+++++|...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
|.|+..+|+...|+.+|+.++. .|.+.....
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999999999999998 466555433
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.58 E-value=5.9e-14 Score=84.51 Aligned_cols=99 Identities=33% Similarity=0.473 Sum_probs=91.9
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
+++.+|.+++..|++++|+..+++++...|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 029105 139 GEPDKAIESFERALAIKPD 157 (199)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~ 157 (199)
|++++|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988774
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=1.2e-13 Score=108.63 Aligned_cols=133 Identities=20% Similarity=0.155 Sum_probs=125.8
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
....+...|+.++..|++++|...+.++|.++|.++.+|..||.+|..+|+.++++..+-.|-.++|++.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.++|++.+|.-+|.+|++.+|.+.......+.++.++|+...|..-++..+..
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988776655543
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-14 Score=106.13 Aligned_cols=156 Identities=19% Similarity=0.047 Sum_probs=129.3
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.+| .+...|+..+-...-.+. ..|..+..|+..|.-|+..|++++|..+|.++..++|....+|...|..+...|..
T Consensus 284 ~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 344 555566554433332233 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
++|+.+|..|-++-|........+|.=|..+++++.|...|.+|+.+.|.+|-.+..+|.+....+.+.+|...+..+.
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9999999999999888888888888888888888888888888888888888877777777777777777776555443
No 72
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.56 E-value=2.3e-14 Score=81.65 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=64.8
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhccc
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG-DAWNALKAATRATELEQ 122 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 122 (199)
++.++..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++.+|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999988
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.56 E-value=4.7e-13 Score=89.72 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=93.3
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
........++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.+...+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 344567888999999999999999999999999887763 45899999999999999999999999999999999999
Q ss_pred HHHHHHHH-------hcCChH-------HHHHHHHHHHhcCCCcH
Q 029105 129 ITLGRAQL-------NFGEPD-------KAIESFERALAIKPDSE 159 (199)
Q Consensus 129 ~~lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 159 (199)
.++|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999998 777766 66666667777788654
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.56 E-value=9.9e-14 Score=105.94 Aligned_cols=160 Identities=21% Similarity=0.165 Sum_probs=137.4
Q ss_pred hcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CCcH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PENA 91 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~ 91 (199)
.+|..|...+++++|+..|.++ .+|..+.++.++|..|...|+|++|..++++++++. |.-.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4799999999999999999887 678888999999999999999999999999998763 2334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-------- 155 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------- 155 (199)
..+.+++.++..++++++|+.++++++.+. |.-+..+.++|.+|..+|++++|...|++++.+.
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 678889999999999999999999999873 2446678999999999999999999999999874
Q ss_pred CCcHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 156 PDSEEARDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 156 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
+.....+.++|..+.+++++.+|...+.......
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3335678999999999999999888776655443
No 75
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.55 E-value=3.8e-14 Score=83.90 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=72.3
Q ss_pred cccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPE--NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
+|+++.|+..++++++..|. +...++.+|.|++..|+|++|+..+++ ...+|.++..++.+|.|+..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 567788899999999999999999999 888898889999999999999999999999
Q ss_pred HHHH
Q 029105 148 FERA 151 (199)
Q Consensus 148 ~~~a 151 (199)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.8e-14 Score=114.03 Aligned_cols=172 Identities=15% Similarity=0.123 Sum_probs=142.9
Q ss_pred cccccCCccccccccCCCCCCchHhhhcchhhhh------------ccchhhhhhccccc--chhhHHHHHHHHhhHHHh
Q 029105 4 TWNKNKGNKKRSLQQFPNLPFDQQDQEHGLSGAE------------LEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAE 69 (199)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~ 69 (199)
.|.+..++....+......+.......+|+++++ .+.+++|+..|.++ .+|.+..+-..+|.++..
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 4666666555333333333334455566776653 34457788888877 889999999999999999
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHhcCChHHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE--QSWAEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
.|++.+|..+|.++.+-..++.++|.++|.||+.+|+|..|++.|+.++... .+++.+...||.++...|.+.+|..+
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999998888889999999999999999999999999999864 35788999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105 148 FERALAIKPDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 148 ~~~al~~~p~~~~~~~~l~~~~~~~~~~ 175 (199)
...++...|.++...++++.+..++...
T Consensus 739 ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 9999999999999999999998876643
No 77
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2e-13 Score=100.94 Aligned_cols=154 Identities=16% Similarity=0.045 Sum_probs=82.6
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
++.|..+...|+.++|+..|-++ .-.+++++++.++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+
T Consensus 528 fniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 34444444444445544444444 2233445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
-.+|.+++-...+..|.+.+..-.+|..|....-.++|+.+|+++--+.|+.......++.|+.+.|+|.+|...+
T Consensus 608 ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4444444444444444444444444444444444566666666666666666666666677777777777666544
No 78
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=3.5e-13 Score=92.34 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=132.9
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 110 (199)
.+....|+.+.|...+... ..|.+..+....|..+...|++++|+++|+..++-+|.|..++...-.+...+|+-.+|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence 4556677888888888776 56888899999999999999999999999999999999999998888888899999999
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
++.+...+...+.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..++.++..+|..+.
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876443
No 79
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=8.5e-14 Score=112.61 Aligned_cols=155 Identities=7% Similarity=-0.092 Sum_probs=106.3
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
..+..+.+.++.|+++.|+..+.++ ..|.++.....++.++...|+.++|+..+++++.-.|........+|.++..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 4466678888888888888888887 56666434446677777778888888888887733344444445556677777
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|...+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHH
Confidence 888888888888888888777777777777777777777777777777777775443 44444443344443444433
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.54 E-value=5.6e-14 Score=104.60 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=103.1
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
..|...+..|+|++|+..|.++ ..|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.+++.+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4578889999999999999999 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
++|+..|++++.++|+++.+...++.|...+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988886655
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.54 E-value=3.5e-13 Score=96.32 Aligned_cols=155 Identities=20% Similarity=0.138 Sum_probs=119.2
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
....++|..++..|.+.+|+..|-.+ .+|++-.+++..|.+|...|+-.-|+..+.+++++-|+...+....|.++++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34477899999999999999999888 7888888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcccccH---HHHHH------------HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 104 LGDAWNALKAATRATELEQSWA---EAWIT------------LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~---~~~~~------------lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
+|++++|...|..++..+|++. ++... ....+...|++..|+....+.+++.|=+...+...+.|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999999999888887432 12111 12223345666677777777777777666666666677
Q ss_pred HHHHhhhhhhhh
Q 029105 169 LHLVKRRKHLHL 180 (199)
Q Consensus 169 ~~~~~~~~~a~~ 180 (199)
|...|+...|..
T Consensus 199 ~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 199 YIAEGEPKKAIH 210 (504)
T ss_pred HHhcCcHHHHHH
Confidence 766666666554
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-13 Score=102.57 Aligned_cols=111 Identities=26% Similarity=0.454 Sum_probs=107.2
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
....|+..+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|++...+.++++|+++..|..+|..+..+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
+|++|+..|.+.|+.+|++.....+|+.++.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~ 115 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYL 115 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhh
Confidence 9999999999999999999999999999983
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.52 E-value=2.6e-13 Score=101.56 Aligned_cols=156 Identities=16% Similarity=-0.100 Sum_probs=114.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhccc----HHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----FREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
...+..+...|++++|...+.++ ..|.+..++.. +..++..|+ ...+...+......+|........+|.++.
T Consensus 47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 44567778888888888887776 56666655554 444444443 333443333333456666677778888888
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHhhhhhh
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE----EARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~a 178 (199)
.+|++++|+..+++++++.|+++.++..+|.++...|++++|+..+++++...|.++ ..+..++.++...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999888888899999999999999999999988876433 2456788889999999888
Q ss_pred hhhcccc
Q 029105 179 HLSGLSN 185 (199)
Q Consensus 179 ~~~~~~~ 185 (199)
...+-..
T Consensus 206 ~~~~~~~ 212 (355)
T cd05804 206 LAIYDTH 212 (355)
T ss_pred HHHHHHH
Confidence 7765443
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.7e-14 Score=111.68 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=129.9
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
..++++.+....++++.|.+.|... ..|....++..+|......++..+|...++.++..+..++.++..+|.+++..
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhh
Confidence 4578899999999999999988887 78888888888887777788888888888888888887777777777665543
Q ss_pred CC------------------------------------------------HHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 105 GD------------------------------------------------AWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 105 ~~------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
.+ ++.|++.|.++++.+|.|.-+-..+|.|+.
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh
Confidence 22 778888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
..|++.+|...|.++.+-..++..+|.++|.||..+|+|..|...+-..+..
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777777788888888888888888877765544443
No 85
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.52 E-value=6.1e-13 Score=98.71 Aligned_cols=144 Identities=22% Similarity=0.224 Sum_probs=127.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
+..+...+..|.+++|+..+..+ ..|+++..+...+.+++..++..+|.+.+++++.++|+.+..+.++|..+.+.|+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC
Confidence 44456777888888888888877 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
+.+|+..+...+..+|+++..|..||.+|..+|+..+|...+-+..........+...+-.+..+.
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888888888777666665555544443
No 86
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8.1e-13 Score=93.08 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=101.7
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD---AWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~ 128 (199)
.+|++++-|..+|.+|+..|+++.|...|.+++++.|+++..+..+|.+++.+.+ -.++...+++++..+|++..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 7899999999999999999999999999999999999999999999998886543 5788899999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
+.+|..+++.|+|.+|+..++..+...|.+..-.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 9999999999999999999999999988765533
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.51 E-value=1.4e-13 Score=77.33 Aligned_cols=62 Identities=35% Similarity=0.518 Sum_probs=31.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44455555555555555555555555555555555555555555555555555555555544
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=2.6e-13 Score=105.28 Aligned_cols=131 Identities=18% Similarity=0.079 Sum_probs=97.5
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|.+.|..++.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 137 NFGEPDKAIE--SFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 137 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+.|+..-|.. .+..+++++|.++++|+.+|.++...|+.++|...+..+.+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7777766666 77777777777777777777777777777777776655544
No 89
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.3e-13 Score=97.66 Aligned_cols=142 Identities=23% Similarity=0.317 Sum_probs=122.2
Q ss_pred hhcchhhhhccchhhhhhccccc--c------------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--D------------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---- 90 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---- 90 (199)
+-.|.+++-.++.+.|+.+|++. . .|.....+...|+-.++.|++..|.++|..+|.++|++
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 44578888888999999999887 2 34445677889999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
+.+|.++|.+....|+..+|+..++.++.++|....++...|.|+..++++++|++.|+++++...+ .+....+..+..
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQL 365 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999998766 444444444433
Q ss_pred H
Q 029105 171 L 171 (199)
Q Consensus 171 ~ 171 (199)
.
T Consensus 366 a 366 (486)
T KOG0550|consen 366 A 366 (486)
T ss_pred H
Confidence 3
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.50 E-value=2.5e-13 Score=76.32 Aligned_cols=65 Identities=28% Similarity=0.329 Sum_probs=60.6
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA 125 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 125 (199)
+.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++..+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999875
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.50 E-value=8.4e-13 Score=98.78 Aligned_cols=160 Identities=16% Similarity=0.005 Sum_probs=127.7
Q ss_pred hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
.....+|..+...|+.+++...+... ...+..+.....+.++...|++++|...+++++..+|++..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 33455677788888888876666655 333456677788999999999999999999999999999877765 555
Q ss_pred HHHcCCH----HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105 101 LLELGDA----WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176 (199)
Q Consensus 101 ~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 176 (199)
+...|.+ ..+...+......+|..+.++..+|.++..+|++++|+..++++++++|+++.++..++.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 5555544 444444444445677788888899999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccc
Q 029105 177 HLHLSGLSND 186 (199)
Q Consensus 177 ~a~~~~~~~~ 186 (199)
+|...+....
T Consensus 166 eA~~~l~~~l 175 (355)
T cd05804 166 EGIAFMESWR 175 (355)
T ss_pred HHHHHHHhhh
Confidence 9988655443
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.50 E-value=9.6e-13 Score=106.62 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=135.5
Q ss_pred ccccCCCCCCchHhhhcchhhhhccchhhhhhcccccchhh--HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQ--LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
.+...|..+.... .+..++...|++++|+..++++..|. ....+..+|.++...|++++|++.|+++++.+|+++.
T Consensus 60 aL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~ 137 (822)
T PRK14574 60 ESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD 137 (822)
T ss_pred HHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 3444555432111 34466677899999999999985444 4455555588999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
++..++..+...++.++|+..+++++..+|.+... ..++.++...++..+|+..++++++.+|++.+++..+..++...
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999986554 55666666678887799999999999999999999999999988
Q ss_pred hhhhhhhhhc
Q 029105 173 KRRKHLHLSG 182 (199)
Q Consensus 173 ~~~~~a~~~~ 182 (199)
|-...|.+..
T Consensus 217 ~~~~~a~~l~ 226 (822)
T PRK14574 217 RIVEPALRLA 226 (822)
T ss_pred CCcHHHHHHH
Confidence 8877766544
No 93
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=8.5e-13 Score=97.70 Aligned_cols=148 Identities=15% Similarity=0.030 Sum_probs=71.9
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
+.|++-+..|++++|.+.|..+ .+....++++++|..+..+|+.++|+.+|-+.-.+--+++.+++.++.+|..+.+.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 3444444455555555554444 22333444555555555555555555555444444444445555555555555555
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
.+|++.+.++..+-|++|..+..+|.+|-+.|+-.+|.+++-...+..|.+.+..-.|+..|....-+++
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 5555555555555555555555555555555555555555544444555554444444444444333333
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-12 Score=101.86 Aligned_cols=130 Identities=25% Similarity=0.249 Sum_probs=119.8
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 108 (199)
.+..+...+..++|.....++ ..|..+..++..|.++...|++.+|.+.|..++.++|+++.+...+|.++.+.|+..
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 366677777778887777666 778899999999999999999999999999999999999999999999999999988
Q ss_pred HHHH--HHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 109 NALK--AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 109 ~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
-|.. .+..+++++|.++++|+.+|.++..+|+.++|.++|.-++++++.+|.
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 8888 999999999999999999999999999999999999999999988764
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.2e-12 Score=95.50 Aligned_cols=153 Identities=15% Similarity=0.033 Sum_probs=123.8
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
+.+|.+++..|++.+|+..|.++ .+|......-..|.++...|++++-.......+..+.....-|+--+...+..++
T Consensus 236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 236 MALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred HHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhh
Confidence 45566666666666666666666 5666666666666666666666666666666666655555666667777888899
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
++.|+.+.+++|+.+|.+.+++...|.++..+|+.++|+-.|+.+..+.|..-+.+..|..+|...|++++|.-.
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998643
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.47 E-value=2.2e-12 Score=93.16 Aligned_cols=152 Identities=13% Similarity=-0.009 Sum_probs=125.2
Q ss_pred hcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC--CH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG--DA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--~~ 107 (199)
..|.++...|++++|++.+... .+.+.......++...++++.|.+.++.+-+.+.+........+.+.+..| ++
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence 3477888899999999999876 345667778889999999999999999999998887766666666666666 59
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
.+|..+|+......+.++..+..++.+++.+|++++|...+++++..+|++++++.+++.+...+|+..++...++.
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999999999998555544443
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.46 E-value=4.8e-12 Score=90.02 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=95.8
Q ss_pred HHHHHHHhhHH-HhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHH
Q 029105 57 ALSFEAQGNNL-AEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWI 129 (199)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 129 (199)
....+..+..+ +..|+|++|+..|+..+...|++ +.+++.+|.+++..|++++|+..|++++...|+ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677777776 66799999999999999999998 589999999999999999999999999988776 578899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105 130 TLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 130 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999987643
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.46 E-value=4.3e-12 Score=87.48 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=124.1
Q ss_pred Hhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKA 98 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la 98 (199)
..+..|...+..|+|.+|+..|..+ ..|..+.+.+.+|.+++..|++.+|+..+++.+...|+++ .+++.+|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3467799999999999999999988 4566788999999999999999999999999999999874 6888899
Q ss_pred HHHHHcC-----------CHHHHHHHHHHHhhcccccHHH-----------------HHHHHHHHHhcCChHHHHHHHHH
Q 029105 99 QVLLELG-----------DAWNALKAATRATELEQSWAEA-----------------WITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 99 ~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
.+++.+. ...+|+..|+..+...|++..+ -+.+|..|...|.+..|+.-++.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9876643 3458999999999999975322 34678889999999999999999
Q ss_pred HHhcCCCcH---HHHHHHHHHHHHHhhhhhhh
Q 029105 151 ALAIKPDSE---EARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 151 al~~~p~~~---~~~~~l~~~~~~~~~~~~a~ 179 (199)
+++..|+.+ +++..++.++..+|....+.
T Consensus 167 v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 167 VIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999874 57888999999999887544
No 99
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=4.2e-12 Score=84.36 Aligned_cols=117 Identities=25% Similarity=0.383 Sum_probs=105.2
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
.+..+..-|+-+|..|+|++|...|..++.+.|..+ .++.+.|.++.++++++.|+..+.++|+++|.+..++..
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 345567789999999999999999999999999763 788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
.+.+|..+..+++|+..|.+++..+|...++...+.++--..
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 999999999999999999999999999888776666554433
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.46 E-value=1.4e-12 Score=105.15 Aligned_cols=142 Identities=11% Similarity=-0.071 Sum_probs=126.9
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH------
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA------ 125 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------ 125 (199)
..|.+..++..+...+...+++++|+..++.+++.+|+...+++.+|.+++..++++.+.-. .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 57889999999999999999999999999999999999999999999999999988877655 5555544444
Q ss_pred -------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhc
Q 029105 126 -------------EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVV 192 (199)
Q Consensus 126 -------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 192 (199)
.+++.+|.||-.+|+.++|...|+++++++|+++.+..++|..+... +.++|...+..+.++....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~ 182 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK 182 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999 9999999888888876665
Q ss_pred CCCC
Q 029105 193 GDKT 196 (199)
Q Consensus 193 ~~~~ 196 (199)
..+.
T Consensus 183 kq~~ 186 (906)
T PRK14720 183 KQYV 186 (906)
T ss_pred hcch
Confidence 5443
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.45 E-value=3.2e-12 Score=91.48 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=108.5
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+|.++.-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-..|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSE---EARDDRQTAL 169 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 169 (199)
|.+++.+|++++|+..|.+++..+|.+. ++...++.+-
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 9999999999999999999999999653 3444444443
No 102
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.44 E-value=9.4e-13 Score=94.21 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=104.8
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
+...|+.|+.+|.|++|+.||.+++..+|.++..+.+.+..|++++.+..|...|..++.++..+..+|...|.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
...+|.+.++.++++.|++.+....++.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999998887776665544
No 103
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.43 E-value=1.7e-11 Score=86.59 Aligned_cols=156 Identities=10% Similarity=0.006 Sum_probs=129.4
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--c---hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--D---AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQK 97 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l 97 (199)
...+..|...+..|++++|+..|+.+ . .+....+.+.+|.++++.+++++|+..+++.++.+|+++ .+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 34467789999999999999999988 3 334456678999999999999999999999999999884 778899
Q ss_pred HHHHHHcC---------------C---HHHHHHHHHHHhhcccccHHH-----------------HHHHHHHHHhcCChH
Q 029105 98 AQVLLELG---------------D---AWNALKAATRATELEQSWAEA-----------------WITLGRAQLNFGEPD 142 (199)
Q Consensus 98 a~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~-----------------~~~lg~~~~~~~~~~ 142 (199)
|.++...+ + ...|+..+++.++..|++.-+ -+..|..|.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 98865544 1 357889999999999975321 246778899999999
Q ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHhhhhhhhhh
Q 029105 143 KAIESFERALAIKPDS---EEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
.|+.-++.+++..|+. ++++..+..++..+|..++|...
T Consensus 193 AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 193 AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999999999998875 67889999999999999987663
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=5.9e-12 Score=95.48 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
++.+++++.+++.++.+|+++..+..+|.++...+++++|...|+++++..|++.. +..++.++...|+.++|...+..
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555566666667788888888999999999999999999999999888544 56788899999998888777665
Q ss_pred ccc
Q 029105 185 NDA 187 (199)
Q Consensus 185 ~~~ 187 (199)
...
T Consensus 387 ~l~ 389 (398)
T PRK10747 387 GLM 389 (398)
T ss_pred HHh
Confidence 544
No 105
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=2.4e-12 Score=98.44 Aligned_cols=149 Identities=16% Similarity=0.077 Sum_probs=127.7
Q ss_pred chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN 109 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 109 (199)
..-.+..+.|...+...... ..|.+++.+...|..+...|+-++|......++..++....+|..+|.++...++|++
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 34455666777777766666 6788888888899999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
|+.+|+.|+.+.|+|...|..++....++++++.....-.+.++..|.....|..++.++...|++..|..
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888899999988889999999888888887765
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.41 E-value=3.7e-11 Score=78.55 Aligned_cols=122 Identities=18% Similarity=0.060 Sum_probs=80.1
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHHHHHHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWITLGRAQ 135 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~ 135 (199)
.........++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+.+.+|.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 33333445677777777777777777766 3556667777777777777777777777765443 34566777777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
...|++++|+..++. +.-.+..+.++..+|.++...|++++|...+..
T Consensus 96 ~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777755 233344456667777777777777777665543
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.41 E-value=1.1e-11 Score=81.05 Aligned_cols=116 Identities=24% Similarity=0.231 Sum_probs=96.0
Q ss_pred hhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCH
Q 029105 36 AELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDA 107 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~ 107 (199)
...++...+...+..+ ..+....+.+.+|.+++..|++++|...|+.++...|+. +.+...+|.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3456666666555555 333457788899999999999999999999999987665 46788999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999976 34445567788999999999999999999999875
No 108
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.41 E-value=5.7e-12 Score=84.45 Aligned_cols=116 Identities=18% Similarity=0.054 Sum_probs=95.6
Q ss_pred HhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChH
Q 029105 68 AEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNFGEPD 142 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~ 142 (199)
+-...+..+...+...+...+.+ ..+++.+|.++..+|++++|+..|++++.+.|+ .+.++.++|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 34455666666776665565555 577899999999999999999999999988765 3458999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHH-------HHhhhhhhhhhcc
Q 029105 143 KAIESFERALAIKPDSEEARDDRQTALH-------LVKRRKHLHLSGL 183 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 183 (199)
+|+..+++++.++|.....+.+++.++. .+|++++|...+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999999999999999999999999 6667766554443
No 109
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=8.5e-12 Score=88.46 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=134.1
Q ss_pred hhcchhhhhccchhhhhhccccc-c-----hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-D-----AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
.-+|+.+.+.|+.+.|+..-+.. . ......++..+|.-|+..|-++.|...|...++....-..+...|..+|.
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ 152 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 35688899999999999876665 2 22346678889999999999999999999988876666788999999999
Q ss_pred HcCCHHHHHHHHHHHhhccccc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 103 ELGDAWNALKAATRATELEQSW-----AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
...+|++|++..++...+.+.. +..+..++..+....+.+.|+..+.++++.+|++..+-..+|.+....|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 9999999999999999988764 45677888888889999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q 029105 178 LHLSGLSN 185 (199)
Q Consensus 178 a~~~~~~~ 185 (199)
|.+..-+.
T Consensus 233 AV~~~e~v 240 (389)
T COG2956 233 AVEALERV 240 (389)
T ss_pred HHHHHHHH
Confidence 88755433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.41 E-value=1e-12 Score=101.61 Aligned_cols=133 Identities=20% Similarity=0.114 Sum_probs=117.0
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
+.+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++|...+.++|++..+|.+++..|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 34555566666777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
..++-.+|...+.++++.+-.+...|-|.-.+....|.+++|..++.+-....
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999998889999999999999999999888776655543
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=6.1e-12 Score=97.43 Aligned_cols=158 Identities=19% Similarity=0.127 Sum_probs=131.9
Q ss_pred CCCchHhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH---
Q 029105 22 LPFDQQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKA--- 98 (199)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la--- 98 (199)
.|..+....++..+...|-...|+..|.+ +..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 34556666788999999999999999865 66677778888888888888888888887 444454444443
Q ss_pred -------------------------HHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 99 -------------------------QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 99 -------------------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
......++|+++...++..++++|-....|+.+|.+..+.++++.|.++|..++.
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 3344568899999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 154 IKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 154 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
++|++.++|.+++.+|..+++..+|......+.
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 999999999999999999999998877555443
No 112
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.39 E-value=9.4e-12 Score=74.69 Aligned_cols=93 Identities=24% Similarity=0.277 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
+++.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccc
Q 029105 173 KRRKHLHLSGLSN 185 (199)
Q Consensus 173 ~~~~~a~~~~~~~ 185 (199)
|++++|.......
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 9999987755433
No 113
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.1e-11 Score=94.30 Aligned_cols=139 Identities=12% Similarity=-0.003 Sum_probs=115.2
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHhhcccccH--HHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLH--EQKAQVLLELGDAWNALKAATRATELEQSWA--EAWIT 130 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 130 (199)
+++..+..++..+...|++++|...++++++..|++.... ..........++.+.+++.++++++.+|+++ .....
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 3677888899999999999999999999999999987531 2333334456889999999999999999999 88899
Q ss_pred HHHHHHhcCChHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105 131 LGRAQLNFGEPDKAIESFE--RALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD 194 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 194 (199)
+|.++...|++++|.++|+ .+++..|+... ...++.++..+|+.++|...+..+.......+|
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~ 405 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQD 405 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999 68888898666 559999999999999998877665554444333
No 114
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.5e-11 Score=85.63 Aligned_cols=108 Identities=21% Similarity=0.151 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 029105 73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG---EPDKAIESFE 149 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~ 149 (199)
.+.-+.-++.-+..+|+|..-|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4556667788889999999999999999999999999999999999999999999999999887654 3478999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 150 RALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 150 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
+++..+|.+..+...|+..+...|++.+|..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999999999765
No 115
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1e-11 Score=90.58 Aligned_cols=128 Identities=19% Similarity=0.111 Sum_probs=110.8
Q ss_pred hhcchhhhhccchhhhhhccccc---------chh--------hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF---------DAK--------QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 91 (199)
-..|+.+++.|+|..|...|.++ .++ ....++.+++.|+..+++|..|+..+.++|..+|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 46699999999999999998886 111 1234678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCC
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK-AIESFERALAIKP 156 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~p 156 (199)
.+++..|.++..+|+|+.|+..|++++++.|+|-.+...+..+..+...+.+ ..+.|..++..-+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999988887766654 4677777776544
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.36 E-value=7.8e-12 Score=70.85 Aligned_cols=66 Identities=24% Similarity=0.218 Sum_probs=42.5
Q ss_pred HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
+..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 455666666666666666666666666666666666666666666666666666666655555543
No 117
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.35 E-value=2.2e-11 Score=94.45 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=92.6
Q ss_pred hHhhhcchhhhhcc---chhhhhhccccc--chhhHHHHHHHHhhHHHhc--------ccHHHHHHHHHHHHcc--CCCc
Q 029105 26 QQDQEHGLSGAELE---KNDDNNEHQEPF--DAKQLALSFEAQGNNLAED--------GKFREALGKWEAALNL--RPEN 90 (199)
Q Consensus 26 ~~~~~~g~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~~l~~--~~~~ 90 (199)
...+..|..+...+ ....|+..|+++ .+|+++.++..++.++... ++...+.....+++.+ +|.+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 33344455554433 356777777777 6777777777766666443 2334555555665553 6666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|+..|++++.++|.++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 777777777777788888888888888888874 677888888888888888888888888888887664
No 118
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.35 E-value=3.5e-11 Score=91.27 Aligned_cols=127 Identities=11% Similarity=0.057 Sum_probs=98.2
Q ss_pred hhcchhhhhccchhhhhhccccc-chhhHHHHHHHH-hhHHHhcccHHHHHHHHHHHHccCCCcHHH-HHHHHHHHHHcC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-DAKQLALSFEAQ-GNNLAEDGKFREALGKWEAALNLRPENAVL-HEQKAQVLLELG 105 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~la~~~~~~~ 105 (199)
...|......|++++|.+...+. ..++.+...+.+ +......|+++.|...+.++.+.+|++... ....+.++...|
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 34577777789999888777665 222334444555 455588999999999999999988887533 334588889999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+..
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999886666665443
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.35 E-value=1.6e-11 Score=82.58 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=90.6
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chh---hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAK---QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVL 101 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 101 (199)
..+.+|..+...|++++|+..|.++ ..| ..+.++..+|.++...|++++|+..+.+++...|.+...+..+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3477899999999999999999988 222 24678999999999999999999999999999999999999999999
Q ss_pred HHcCC--------------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 102 LELGD--------------AWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 102 ~~~~~--------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
...|+ +++|++++++++..+|++ +...+..+...|
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 99888 577888888888888876 333444444433
No 120
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=1.7e-11 Score=94.23 Aligned_cols=157 Identities=14% Similarity=0.013 Sum_probs=135.1
Q ss_pred hhhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105 35 GAELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (199)
.+...+++.|...+.++ .......+|+.-+.....+++.++|+..++++++..|+...+|+.+|+++-.+++.+.|...
T Consensus 628 e~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred hhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455677777777666 44456778888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFV 191 (199)
Q Consensus 114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (199)
|...++..|+.+..|..++.+-...|+.-.|...++++...+|.+...|......-.+.|..+.|....-.+++.+..
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998887766555554433
No 121
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.35 E-value=6.3e-11 Score=74.03 Aligned_cols=96 Identities=26% Similarity=0.154 Sum_probs=87.3
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITL 131 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 131 (199)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|.++...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999976544 578999999999999999999999999999888 88888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 029105 132 GRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~ 153 (199)
+.++...|+.++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=1.2e-10 Score=90.01 Aligned_cols=153 Identities=16% Similarity=0.059 Sum_probs=98.8
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC--
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG-- 105 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-- 105 (199)
....++...|++++|+.++... .-.+...++-..|.++...|++++|...|...+..+|++...+..+..+.....
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 3456667778888888877665 444556677778888888888888888888888888887777776666652221
Q ss_pred ---CHHHHHHHHHHH-----------------------------------------------------------------
Q 029105 106 ---DAWNALKAATRA----------------------------------------------------------------- 117 (199)
Q Consensus 106 ---~~~~A~~~~~~a----------------------------------------------------------------- 117 (199)
..+.-...|++.
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 111111111110
Q ss_pred ----hhcc------------ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 118 ----TELE------------QSW--AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 118 ----l~~~------------p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
++.. |.. .-+++.++..|-..|++++|+.++++++...|+.++.+...|.++...|++.+|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 0000 000 1234667777777888888888888888888888888888888888888877776
Q ss_pred hhc
Q 029105 180 LSG 182 (199)
Q Consensus 180 ~~~ 182 (199)
...
T Consensus 249 ~~~ 251 (517)
T PF12569_consen 249 EAM 251 (517)
T ss_pred HHH
Confidence 544
No 123
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.33 E-value=7.1e-12 Score=71.01 Aligned_cols=68 Identities=29% Similarity=0.312 Sum_probs=62.1
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
++..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998887776653
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.32 E-value=5e-11 Score=75.08 Aligned_cols=97 Identities=18% Similarity=0.080 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc---HHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWITLGRAQLNFGEPDKAIESFERALAIKPDS---EEARDD 164 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 164 (199)
+..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4568899999999999999999999999998876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHHhhhhhhhhhcccccc
Q 029105 165 RQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 165 l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
++.++..+|++++|...+....+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 99999999999998876655444
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.32 E-value=4.3e-12 Score=75.05 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=70.4
Q ss_pred HcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 103 ELGDAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
.+|+|+.|+..+++++..+|. +...++.+|.|++..|++++|+..+++ ...+|.+......+|.|+..+|++++|..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567788899999999999999999999 88899998999999999999999999887
Q ss_pred hc
Q 029105 181 SG 182 (199)
Q Consensus 181 ~~ 182 (199)
.+
T Consensus 80 ~l 81 (84)
T PF12895_consen 80 AL 81 (84)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.32 E-value=1.8e-11 Score=70.33 Aligned_cols=65 Identities=35% Similarity=0.568 Sum_probs=37.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 99 QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
.++...+++++|+.++++++.++|+++..+..+|.++..+|++++|+..++++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555554433
No 127
>PRK11906 transcriptional regulator; Provisional
Probab=99.30 E-value=1.1e-10 Score=87.14 Aligned_cols=159 Identities=8% Similarity=-0.085 Sum_probs=124.1
Q ss_pred hhcchhhhhccc---hhhhhhccccc-----chhhHHHHHHHHhhHHHhc---------ccHHHHHHHHHHHHccCCCcH
Q 029105 29 QEHGLSGAELEK---NDDNNEHQEPF-----DAKQLALSFEAQGNNLAED---------GKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 29 ~~~g~~~~~~~~---~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~~~~~ 91 (199)
+..|...+..+. ...|+..|.++ .+|..+.++..++.|++.. ....+|.+..+++++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 344555544333 35666677666 5788899999999988765 345678899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-HH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA-LH 170 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~ 170 (199)
.++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+..-.|+.++|+..++++++++|....+-...-.+ ..
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865442222222 22
Q ss_pred HHhhhhhhhhhcccccc
Q 029105 171 LVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 171 ~~~~~~~a~~~~~~~~~ 187 (199)
.-...+++...++...+
T Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 419 VPNPLKNNIKLYYKETE 435 (458)
T ss_pred cCCchhhhHHHHhhccc
Confidence 22345566665554443
No 128
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.30 E-value=2.3e-11 Score=69.89 Aligned_cols=71 Identities=30% Similarity=0.324 Sum_probs=65.4
Q ss_pred HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
+..+++..+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..++++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999998887665543
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.30 E-value=1.8e-10 Score=86.14 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=106.1
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP 141 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 141 (199)
.+-..+...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3444555678999999999999988875 4567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 142 DKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+.|+...++++...|.+...|..|+.+|..+|++++|....
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999987543
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=2.5e-11 Score=96.96 Aligned_cols=153 Identities=17% Similarity=0.092 Sum_probs=113.4
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLEL 104 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~ 104 (199)
..+|.+|...-+...|...|.++ .++.+..+....+..+....+++.|....-.+-+..|-. ...|..+|..|.+.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence 44566666555556666666666 556666666666666666666666666544444444432 24455677777778
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
++...|+..|+.+++.+|.+..+|..+|.+|...|.+..|++.|.++..++|.+.-..+..+.+...+|++.++...
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999888888888888888988887653
No 131
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=2.3e-10 Score=79.98 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=98.4
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITL 131 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 131 (199)
.-.+..+.-++..|+|..|...|..-+...|+. +.++++||.+++.+|+|+.|...|..+++..|+ -|++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 338999999999999999999999999999987 589999999999999999999999999998775 56889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (199)
|.+...+|+.++|...|+++++..|+...+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999998876543
No 132
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.28 E-value=1.8e-10 Score=73.25 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=92.6
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---HHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---AWI 129 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 129 (199)
.+..++..|...+..|+|.+|++.|+.+....|.. ..+...++.+++..+++++|+..+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35678889999999999999999999999888765 478899999999999999999999999999987654 688
Q ss_pred HHHHHHHhcCC---------------hHHHHHHHHHHHhcCCCcHHH
Q 029105 130 TLGRAQLNFGE---------------PDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 130 ~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 161 (199)
..|.+++.+.. ...|...|++.++..|++.-+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 89999988876 788999999999999987644
No 133
>PRK15331 chaperone protein SicA; Provisional
Probab=99.28 E-value=3.6e-11 Score=78.06 Aligned_cols=105 Identities=8% Similarity=-0.128 Sum_probs=95.0
Q ss_pred HHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105 83 ALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
+..+.++.....+..|.-++..|++++|...|+-+...+|.+++.|..||.|+..+++|++|+..|..+..++++++...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34455666678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccc
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+..|.|+..+|+...|...+....+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999876554443
No 134
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.28 E-value=6e-10 Score=84.99 Aligned_cols=124 Identities=12% Similarity=0.077 Sum_probs=64.1
Q ss_pred chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAW 108 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~ 108 (199)
|...+..|+++.|.+...+. ..|.....+...|.+...+|+++.|...+.++.+..|++. .+....+.++...|+++
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 44455555555555555444 2333333344445555555555555555555555555443 23333455555555555
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
.|...+++.++..|+++.++..++.++...|++++|+..+.+..+..
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555555555555555555443
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.7e-10 Score=84.57 Aligned_cols=148 Identities=15% Similarity=0.050 Sum_probs=67.8
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH-HHH-HHcCC
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKA-QVL-LELGD 106 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~-~~~~~ 106 (199)
.|..+...|+.++|+-.|+.+ ..|...+.+..+..+|...|.+.+|....+.++...|.++..+..+| .++ ..-.-
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh
Confidence 466666666666666666665 55666666666666666666554444433333333222222222221 111 01111
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
-++|...+++++++.|.+..+-..++..+...|.+.+++..+++.+...|+ -..+..||.++...+.+.+|.
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHH
Confidence 233333444444444444444444444444444444444444444444443 223444444444444444443
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.26 E-value=2.9e-10 Score=88.34 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=109.0
Q ss_pred HHHHHHHHhhHHHhcc---cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHhhc--cc
Q 029105 56 LALSFEAQGNNLAEDG---KFREALGKWEAALNLRPENAVLHEQKAQVLLELG--------DAWNALKAATRATEL--EQ 122 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p 122 (199)
.+..++..|..++..+ ++..|+.+|+++++++|+++.++-.++.++.... +...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 3445666777776554 4889999999999999999999999888876542 244566666776664 77
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 123 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
..+.++..+|..+...|++++|...+++++.++|+ ..++..+|.++...|+.++|...+..++..
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999994 889999999999999999999888766543
No 137
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=1.3e-10 Score=89.10 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=117.4
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
...++..+.-.+..++|...+...++.+...|.+++..-..|..+..+|+-++|......+++.++.+...|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34567777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
...+|++|+++|+.|+.++|+|..++..++....++++++-....-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999988755433
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.25 E-value=1.2e-10 Score=87.05 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=103.4
Q ss_pred hhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 029105 35 GAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (199)
+...++++.|+..+++.... ++++...++.++...++..+|+..+.+++...|.+...+...+..+...++++.|+.+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred HhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34467889999998887221 14566778999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
++++...|++...|+.|+.+|..+|+++.|+..+..+
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999777644
No 139
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.25 E-value=1.8e-10 Score=75.53 Aligned_cols=105 Identities=26% Similarity=0.232 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC--
Q 029105 73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGD----------AWNALKAATRATELEQSWAEAWITLGRAQLNFGE-- 140 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-- 140 (199)
|+.|.+.++.....+|.+++.+++.|..+.++.+ +++|+.-|++++.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999998887644 5678888999999999999999999999987654
Q ss_pred ---------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 141 ---------PDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 141 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
|++|..+|++++..+|++...+..|..+...-+-+.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e 132 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHME 132 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHH
Confidence 7889999999999999999888877766543333333
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=1.9e-10 Score=77.55 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=103.4
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+...+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.+++.+|..+...|+|+.|.+.|...++++|.+--++.+.
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
|..+..-|++.-|.+.+.+-.+.+|++|-
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999999999999999999875
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.21 E-value=1.3e-09 Score=77.05 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=90.6
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVL---HEQKAQVLLELGDAWNALKAATRATELEQSW---AEAW 128 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 128 (199)
..+..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778899999999999999999999999999988644 4899999999999999999999999998875 4578
Q ss_pred HHHHHHHHhcC---------------C---hHHHHHHHHHHHhcCCCcH
Q 029105 129 ITLGRAQLNFG---------------E---PDKAIESFERALAIKPDSE 159 (199)
Q Consensus 129 ~~lg~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~ 159 (199)
+.+|.++..++ + ..+|+..|++.++..|+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 99998875544 1 3578899999999999874
No 142
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.21 E-value=1.1e-10 Score=87.03 Aligned_cols=70 Identities=21% Similarity=0.153 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVL---HEQKAQVLLELGDAWNALKAATRATELE 121 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 121 (199)
.+|+++.+++++|.+|+..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578889999999999999999999999999999999998854 9999999999999999999999999873
No 143
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.18 E-value=1.6e-10 Score=92.54 Aligned_cols=147 Identities=17% Similarity=0.107 Sum_probs=130.0
Q ss_pred chhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 40 KNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 40 ~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
+...|...+.++ .++..+.++..+|.+|+..-+...|..+|.++.++++.+..++-..+..|.+..+++.|..++-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 345566666555 778888999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 118 TELEQS--WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 118 l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
-+..|- ....|..+|..|.+.++...|+..|+.+++.+|.+..+|..+|.+|...|++.-|.+.+-.+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 777774 334677799999999999999999999999999999999999999999999999888775443
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=9.8e-10 Score=79.57 Aligned_cols=130 Identities=16% Similarity=0.111 Sum_probs=104.2
Q ss_pred chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc--cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG--KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
-.+++.+++++.|.+.+... .+.+..-+....+.+.+..| ++.+|...|+......+.++..+..++.|+..+|+|
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 46788899999999888776 34444444445555555555 689999999999988888899999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCcHHH
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEP-DKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~ 161 (199)
++|...+.+++..+|+++.++.+++.+...+|+. +.+.+.+.+....+|+++..
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999 56677888888899998754
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=8.5e-10 Score=82.60 Aligned_cols=129 Identities=12% Similarity=-0.017 Sum_probs=112.1
Q ss_pred HHHHHhhHHHhcc---cHHHHHHHHHHHH---ccCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcccc
Q 029105 59 SFEAQGNNLAEDG---KFREALGKWEAAL---NLRPENAVLHEQKAQVLLEL---------GDAWNALKAATRATELEQS 123 (199)
Q Consensus 59 ~~~~~~~~~~~~~---~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~ 123 (199)
..+..|...+..+ ..+.|+.+|.+++ .++|+.+.++..++.|++.. ....+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466777766554 3467889999999 99999999999999998754 3356788999999999999
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|......+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998876655444
No 146
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=8.2e-10 Score=69.06 Aligned_cols=95 Identities=26% Similarity=0.106 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---cHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD---SEEARDDR 165 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 165 (199)
.+++.+|.++-..|+.++|+..|++++..... -..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46789999999999999999999999997543 3568999999999999999999999999999888 78888999
Q ss_pred HHHHHHHhhhhhhhhhccccc
Q 029105 166 QTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 166 ~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+.++...|+.++|....+...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999998877554
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.16 E-value=3.5e-09 Score=73.10 Aligned_cols=104 Identities=24% Similarity=0.241 Sum_probs=86.3
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH---HHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWA---EAWI 129 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 129 (199)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++..|+..+++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 56789999999999999999999999999998876 58899999999999999999999999999988754 5788
Q ss_pred HHHHHHHhcC-----------ChHHHHHHHHHHHhcCCCcH
Q 029105 130 TLGRAQLNFG-----------EPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 130 ~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~ 159 (199)
.+|.+++.+. ...+|+..|+..+...|+++
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 9999876543 34589999999999999874
No 148
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.16 E-value=4.3e-09 Score=65.43 Aligned_cols=103 Identities=30% Similarity=0.329 Sum_probs=91.8
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----cHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS----WAEAWITLG 132 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg 132 (199)
...+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|+..+++++++... --.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 4456677888999999999999999999999999999999999999999999999999999998643 345789999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (199)
.+|..+|+.+.|...|+.+-++.....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999998888765543
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.15 E-value=1.5e-10 Score=67.38 Aligned_cols=64 Identities=30% Similarity=0.369 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELE-------QSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
..++.++|.++..+|++++|+.+|++++.+. |....++.++|.++..+|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555431 122334555555555555555555555555543
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.15 E-value=2.5e-10 Score=92.47 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=107.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---------------
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA--------------- 91 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~--------------- 91 (199)
..+...+...+++++|+..+... ..|+....++.+|.++++.+++.++... .++...+.+.
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~ 112 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLY 112 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhh
Confidence 34567777899999999999877 8899999999999999999988887766 6666655555
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 92 ----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 92 ----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.+++.+|.||-++|++++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++..
T Consensus 113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988 999999888888765
No 151
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.5e-10 Score=76.68 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=92.4
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
..-+...|..++....|..|+.+|.++|.++|..+..+.+.+.|+++.++++.+...+.++++++|+....++.+|.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 029105 137 NFGEPDKAIESFERALAI 154 (199)
Q Consensus 137 ~~~~~~~A~~~~~~al~~ 154 (199)
....|++|+..++++..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 999999999999999655
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.13 E-value=1.1e-09 Score=78.14 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=88.9
Q ss_pred hHhhhcchhh-hhccchhhhhhccccc--chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHH
Q 029105 26 QQDQEHGLSG-AELEKNDDNNEHQEPF--DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQ 96 (199)
Q Consensus 26 ~~~~~~g~~~-~~~~~~~~A~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~ 96 (199)
...++.+..+ +..|+|++|+..|..+ ..|+. +.+++.+|.+++..|++++|+..|++++...|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4446666665 5579999999999888 44544 6899999999999999999999999999988875 689999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
+|.++...|++++|...|+++++..|+...+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999999999877543
No 153
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.12 E-value=2.8e-09 Score=82.46 Aligned_cols=124 Identities=13% Similarity=0.038 Sum_probs=58.0
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
|++.++|+.-..+.+...+++.|...|.++....|. ..+|+--+.+...+++.++|+..++++++..|+.+..|..+|+
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQ 693 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhH
Confidence 333333443334444444444444444444333332 3334444444444455555555555555555555555555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 178 (199)
++.++++.+.|...|...++..|+.+..|..|+.+-...|..-+|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 555555555555555555555555555555555554444444443
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.11 E-value=8.6e-09 Score=68.14 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=108.6
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHc-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALN-LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGR 133 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~ 133 (199)
..-.+.+|..+...|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|. .++....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 44567899999999999999999999875 56788899999999999999999999999999999884 6777889999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
++..+|.+.+|...|+.++...|+ +.+....+..+..+|+.+++...
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 999999999999999999999987 67777888888888877776543
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.10 E-value=1.1e-09 Score=81.83 Aligned_cols=71 Identities=21% Similarity=0.098 Sum_probs=67.4
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 85 NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA---WITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
..+|+++..++++|..++.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999855 9999999999999999999999999973
No 156
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.10 E-value=1.3e-08 Score=70.71 Aligned_cols=156 Identities=17% Similarity=0.089 Sum_probs=129.5
Q ss_pred hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQK 97 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l 97 (199)
...++.|...++.|++++|+..|..+ ..|-...+...++.++++.+++++|+..+++-+.+.|.++ .+++..
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 44578899999999999999999988 4455678999999999999999999999999999999875 567788
Q ss_pred HHHHHHcCC--------HHHHHHHHHHHhhcccccHH-----------------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 98 AQVLLELGD--------AWNALKAATRATELEQSWAE-----------------AWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 98 a~~~~~~~~--------~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
|.+++..=+ ..+|+..++..+...|++.- --..+|..|.+.|.+-.|+.-++.++
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 888765322 56788889999999887421 12467888999999999999999999
Q ss_pred hcCCCc---HHHHHHHHHHHHHHhhhhhhhhh
Q 029105 153 AIKPDS---EEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 153 ~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
+..|+. .+++..+..+|..+|-.++|...
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 987765 46788888999999999888753
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.10 E-value=1.9e-09 Score=78.23 Aligned_cols=152 Identities=18% Similarity=0.096 Sum_probs=110.2
Q ss_pred cchhhhhccchhhhhhccccc-------chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--Cc----HHHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF-------DAK-QLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--EN----AVLHEQ 96 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~----~~~~~~ 96 (199)
-|..+...+++++|...|.++ .++ .....+...+.++... ++++|+.+|++++.+.- ++ ..++..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 377888889999999998887 223 3345555666665554 99999999999987632 11 478899
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-------HHHH
Q 029105 97 KAQVLLEL-GDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-------EEAR 162 (199)
Q Consensus 97 la~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 162 (199)
+|.+|... |++++|++.|++|+.+... ....+..+|.++..+|+|++|+..|+++....-++ ...+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 99999998 9999999999999987432 23467889999999999999999999998754221 1345
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 029105 163 DDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~ 183 (199)
...+.|+...|+.-.|....-
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 667778888888877765443
No 158
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.10 E-value=9.6e-10 Score=69.95 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=90.2
Q ss_pred hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQK 97 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~l 97 (199)
...+..|...++.|+|++|++.++.+ -.+-...+.+.++.+++..+++++|+..+++.++++|.++ .+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 45577899999999999999999888 4455678899999999999999999999999999999885 788999
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHhhcccccHHH
Q 029105 98 AQVLLELGD---------------AWNALKAATRATELEQSWAEA 127 (199)
Q Consensus 98 a~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 127 (199)
|.+++.+.. ...|...|++++...|++.-+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999877 889999999999999987543
No 159
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.10 E-value=4.4e-10 Score=65.40 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNL----RPE---NAVLHEQKAQVLLELGDAWNALKAATRATELE 121 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 121 (199)
+|..+.++..+|.++...|++++|+.+|++++.+ .++ ...++.++|.++..+|++++|++++++++++.
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3678889999999999999999999999999965 122 25789999999999999999999999999864
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=5.5e-09 Score=75.63 Aligned_cols=143 Identities=15% Similarity=0.021 Sum_probs=82.6
Q ss_pred hhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105 35 GAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (199)
+....+|..|+..++-. ...+....-.-+|.|+++.|+|++|+..|.-+...+..+...+.+++.|++..|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 34445666666654433 222223344456777777777777777777776665556677777777777777776666
Q ss_pred HHHHHHhhc--------------cc------------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 112 KAATRATEL--------------EQ------------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 112 ~~~~~al~~--------------~p------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
....++-.. +. +..+-...++.++...-.|++|++.|.+++.-+|+....-..+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 655443221 00 0111223445555555566666666666666666666666666
Q ss_pred HHHHHHHhhhhh
Q 029105 166 QTALHLVKRRKH 177 (199)
Q Consensus 166 ~~~~~~~~~~~~ 177 (199)
+.||.++.-++-
T Consensus 192 ALCyyKlDYydv 203 (557)
T KOG3785|consen 192 ALCYYKLDYYDV 203 (557)
T ss_pred HHHHHhcchhhh
Confidence 666666655443
No 161
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.6e-09 Score=75.60 Aligned_cols=154 Identities=16% Similarity=0.018 Sum_probs=128.6
Q ss_pred hhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105 35 GAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (199)
+.+..+|.+|++..... ..|.+-..+..+|.||+...+|..|..+|++.-.+.|.........+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36677899999887655 6676777899999999999999999999999999999999988899999999999888876
Q ss_pred HHHHHhh----------c--------------------cc--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 113 AATRATE----------L--------------------EQ--SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 113 ~~~~al~----------~--------------------~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
....... + -| +......+.|.+.++.|+++.|++-|+.+++....++-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 6533222 1 13 35567788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 161 ARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 161 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.-++++.++...+++..|.+..-.-.++
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999988755444443
No 162
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.2e-09 Score=71.65 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=89.6
Q ss_pred cchhhhhccchhhhhhccccc-------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF-------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
-|+-++..|+|.+|...|..+ ......-.+.+.|.+++.++.++.|+..+.++|+++|....++...|.+|-+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 488899999999999988877 2223455677899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 104 LGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
+.+|++|+..|.++++.+|....+.-....
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 999999999999999999987665544443
No 163
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.04 E-value=7e-10 Score=82.77 Aligned_cols=116 Identities=23% Similarity=0.385 Sum_probs=107.8
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
..-..+...+..+.|+.|+..|.++++++|+.+.++-+.+..+.+.+++..|+..+.++++.+|....+++..|.+.+.+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 139 GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
+.+.+|...|+....+.|+++.+...+..|-....+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888765544
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.04 E-value=2.1e-10 Score=84.25 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=80.8
Q ss_pred hhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc--------------------HHHHHHH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK--------------------FREALGK 79 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~ 79 (199)
..++|+.+--+|.|++|+..+.+- +.-....+++++|.+|...|+ ++.|+++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 356677777777777776654433 222345666777777665543 2334444
Q ss_pred HHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHH
Q 029105 80 WEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 80 ~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
|..-+++.... ..++-++|..|+..|+|+.|+..-+.-+.+... .-.++.++|.|+.-+|+++.|+++
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 44444332111 244555666666666666666555555544322 123555666666666666666666
Q ss_pred HHHHHhcC----CC--cHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 148 FERALAIK----PD--SEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 148 ~~~al~~~----p~--~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
|+..+.+. .. .+..-+.||..|..+.++.+|....
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh 298 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYH 298 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 65544331 11 1233445555555555555554433
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=3.9e-08 Score=76.40 Aligned_cols=128 Identities=16% Similarity=0.010 Sum_probs=111.2
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
.++++.++..|-..|++++|+++++++|...|..++.++..|.++-+.|++.+|...++.+-.+|+.+--.....+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred hcCChHHHHHHHHHHHhcCC--Cc-------HHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 137 NFGEPDKAIESFERALAIKP--DS-------EEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
+.|++++|...+..-.+.+. .. .......|.++.+.|++..|..-+..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999887665542 11 12345678899999999998875543
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=4.5e-09 Score=71.08 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=114.4
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
.+.|..|-..|-..-|.-.|.++ ..|..+.+++.+|.-+...|+|+.|.+.|+..++++|....++.+.|..++.-|+
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence 45566777777777777777777 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHH--HHH--------------HHHHHH--------------HhcCChHHHHHHHHHHHhcCC
Q 029105 107 AWNALKAATRATELEQSWAE--AWI--------------TLGRAQ--------------LNFGEPDKAIESFERALAIKP 156 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~--~~~--------------~lg~~~--------------~~~~~~~~A~~~~~~al~~~p 156 (199)
|.-|.+.+.+-.+.+|++|- .|. ++..-+ +.+|+..+ ...++++..-..
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADAT 227 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhcc
Confidence 99999999888888887652 121 111111 12233321 122333333333
Q ss_pred Cc-------HHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 157 DS-------EEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 157 ~~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
++ .++++.||.-+...|+..+|...+.
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 32 4578889999999999888876553
No 167
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.1e-08 Score=76.67 Aligned_cols=164 Identities=20% Similarity=0.106 Sum_probs=118.2
Q ss_pred cccccCCCCCCchHhhhcchhhhhccchhhhhhcccccch-hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPFDA-KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
.++...|+-+....- .-.+..+.+.|++|+.....-.. .......+..+.|.++.+..++|+.+++ ..++.+..
T Consensus 37 Kil~~~pdd~~a~~c--KvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ 111 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRC--KVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK 111 (652)
T ss_pred HHHhcCCCcHhhHhh--hHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH
Confidence 345555554432221 12456677788888855443311 1111222688999999999999999988 45667777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcc------------------------------c-ccHHHHHHHHHHHHhcCCh
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELE------------------------------Q-SWAEAWITLGRAQLNFGEP 141 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------p-~~~~~~~~lg~~~~~~~~~ 141 (199)
+....|.+++++|+|++|+.+|+..++.+ | +..+..|+.+.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 88899999999999999999998875442 1 1455789999999999999
Q ss_pred HHHHHHHHHHHhcC--------CCc-------HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 142 DKAIESFERALAIK--------PDS-------EEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 142 ~~A~~~~~~al~~~--------p~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
.+|++.++.++++. .+. ..+..+++.++..+|+.++|...+
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999995441 111 236788999999999999987744
No 168
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.96 E-value=6.7e-09 Score=72.72 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=94.1
Q ss_pred hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQK 97 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l 97 (199)
...|+.+..++..|+|.+|...|... ..+..+.+++.+|.+++.+|++++|...|..+++-.|++ ++.++-+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 34688899999999999999998877 445568899999999999999999999999999988776 5899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105 98 AQVLLELGDAWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
|.|...+|+.++|-..|++++...|+...+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999998776543
No 169
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.94 E-value=1.7e-09 Score=79.61 Aligned_cols=141 Identities=19% Similarity=0.142 Sum_probs=107.9
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc------c
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQ------S 123 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~ 123 (199)
...++-++|+.|+..|+|++|+..-+.-+.+.... -.++.++|.|+.-.|+++.|+++|.+.+.+.- -
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 34566778888899999999998877766654322 36788999999999999999999988775522 2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKP------DSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKT 196 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (199)
.++.-|.+|..|.-..++++||.++.+-+.+.. ....+.+.||.++..+|..++|....-...+.....+|.+
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 455678899999999999999999988877643 2356788899999999999888776665666666666655
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.94 E-value=2.4e-08 Score=66.11 Aligned_cols=130 Identities=17% Similarity=0.041 Sum_probs=112.4
Q ss_pred CCCchHhhhcchhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHH
Q 029105 22 LPFDQQDQEHGLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQ 96 (199)
Q Consensus 22 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~ 96 (199)
-|..++.+.+|+.....|++.+|...|.++ ....++..+..+++..+..+++..|...++...+.+|.. ++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 344566678899999999999999999988 455678899999999999999999999999999998854 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
+|.++...|++..|...|+.++...|+ +.+....+..+..+|+..+|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999999999999999999887 6778889999999998887766555444
No 171
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.4e-08 Score=67.09 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=94.5
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPEN----------AVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
...++...|+-++..|+|.+|...|..++.. .|.. ..++.+++.|+...|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3567888999999999999999999988643 3444 367889999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
+..+|++..+++..|.++...=+..+|...|.++++++|.-..+
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999986543
No 172
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.93 E-value=7.7e-08 Score=80.74 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=84.3
Q ss_pred hhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCH
Q 029105 33 LSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~ 107 (199)
..+.+.|++++|.+.|... ..+.+...+..+...|.+.|++++|...|.+.... .|+ ...+..+...+.+.|++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Confidence 3455666666666666555 11223455566666666666666666666665543 232 44555566666666666
Q ss_pred HHHHHHHHHHhhcc-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 108 WNALKAATRATELE-QSWAEAWITLGRAQLNFGEPDKAIESFERALAI--KPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 108 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
++|.+.+..+.+.. +-+...+..+..+|.+.|++++|+..|+++... .| +...|..+...|.+.|+.++|...+
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666665542 223445666666666666666666666665442 23 3455666666666666666655433
No 173
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.93 E-value=1.7e-08 Score=82.16 Aligned_cols=149 Identities=13% Similarity=0.042 Sum_probs=99.3
Q ss_pred cchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCC-------------------
Q 029105 31 HGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPE------------------- 89 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~------------------- 89 (199)
+...|.+.|++++|...|.....| +...|..+...|.+.|+.++|++.|++.... .|+
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 345566666666666666655333 2345555666666666666666666554432 222
Q ss_pred ----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 90 ----------------NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 90 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
+...|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 1233445555666666666666666543 1233 345678888888888999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 154 IKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 154 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+.|++...+..++.+|...|++++|.+..
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 99998888999999999999999988754
No 174
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=9.8e-08 Score=69.87 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=99.4
Q ss_pred chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC----------------------
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR---------------------- 87 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---------------------- 87 (199)
.......|++..|......+ ..|.++.++.....+|...|+|........+.-+..
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544 555566666666666666666665555444432210
Q ss_pred --------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----------------------------
Q 029105 88 --------------------PENAVLHEQKAQVLLELGDAWNALKAATRATE---------------------------- 119 (199)
Q Consensus 88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------------- 119 (199)
.+++.+...++.-+..+|++++|.+....+++
T Consensus 240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHH
Confidence 01123334445555566667777666555443
Q ss_pred ---cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 120 ---LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 120 ---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
.+|++|..+..+|..+...+.+.+|..+|+.++...|. ...+..+|.++.++|+..+|......+.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 35667788888999999999999999999988888776 5567888888888888888877555444
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.3e-07 Score=65.93 Aligned_cols=148 Identities=12% Similarity=-0.010 Sum_probs=120.6
Q ss_pred chhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----cCCH
Q 029105 32 GLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE----LGDA 107 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~ 107 (199)
|.++...|++++|+...... ...++...-..++.+..+++-|...+++..+++.+. .+..||..+.. -+++
T Consensus 115 a~i~~~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG---ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhh
Confidence 66778888899988887663 345566666788888999999999999998887553 33445544443 4568
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
..|.-+|+..-...|..+......+.|++.+|++++|...++.++..++++++++.++..+-...|+..++....+.
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999999977878999999999999999999999999999999999999999999999999988776554443
No 176
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.91 E-value=3.9e-09 Score=76.04 Aligned_cols=104 Identities=17% Similarity=0.088 Sum_probs=95.4
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
-+.|+.|+..|.|++|+.+|.+. ..|.++-.+.+.+.+|++...|..|...+..++.++.....+|...|..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999988 7888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 107 AWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
..+|.+.++.++++.|++.+..-.++
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 99999999999999998766544333
No 177
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.90 E-value=2.3e-08 Score=81.37 Aligned_cols=144 Identities=12% Similarity=-0.035 Sum_probs=81.5
Q ss_pred chhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDAWN 109 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~ 109 (199)
-..|.+.|++++|...|.....+ +...|..+...|.+.|++++|+..|++.... .| +...+..+...+.+.|++++
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHH
Confidence 45677788888888888776433 4567778888888888888888888777543 23 23445555555555555555
Q ss_pred HHHHHHHHhhcc-cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 110 ALKAATRATELE-QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 110 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
|.+.+..+++.. +.+..++..+...|.+.|++++|...|++..+ | +...|..+...|...|+.++|..
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHH
Confidence 555555555442 22333444444444444444444444444322 1 23344444444444444444433
No 178
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.4e-08 Score=71.56 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=94.4
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
..+.-+..-|+-|+...+|..|+.+|.++|...-.+ ..+|.+.+.|.+..|+|..|+..+.+++.++|.+..+++.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 356777889999999999999999999999875544 4789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 131 LGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
-+.|+..+.++.+|..+++..+.++...
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999988876554
No 179
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4.4e-08 Score=74.95 Aligned_cols=149 Identities=13% Similarity=-0.004 Sum_probs=119.5
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 110 (199)
+.+...|+|++|.....+. ..|++..++.....++.+.++|++|+...+.-....-.+ ...+..+.|.+++++.++|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHH
Confidence 4566788999999988888 668999999999999999999999996555433222222 2237899999999999999
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------------------------cH
Q 029105 111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-------------------------------SE 159 (199)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~ 159 (199)
+..++ ..++.+.......|.+++++|+|++|++.|+..++.+.+ .-
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 99998 456666778899999999999999999999988654321 23
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 160 EARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
+..++.+.++...|+|.+|.+....+
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 46788999999999999998866655
No 180
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.87 E-value=1.6e-07 Score=78.86 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-cccHHHHHHHHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALN----LRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-QSWAEAWITLGR 133 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 133 (199)
.+..+...+.+.|++++|.+.|.+... +.|+ ...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+..
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 334444444444444444444444332 1222 2333333334444444444444444443332 122333333333
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 029105 134 AQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al 152 (199)
.|.+.|++++|+..|.++.
T Consensus 623 ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 3444444444444443333
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.87 E-value=3.8e-08 Score=71.46 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=94.2
Q ss_pred hccchhhhhhccccc--------chhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHccCCCc------HHHHHHHHHHH
Q 029105 37 ELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAED-GKFREALGKWEAALNLRPEN------AVLHEQKAQVL 101 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~ 101 (199)
...++++|+..+.++ ....-+..+..+|.+|... |++++|++.|++++.+.... ..++..+|.++
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 344777777777666 2334577888999999999 99999999999999873322 36788999999
Q ss_pred HHcCCHHHHHHHHHHHhhccc-------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 102 LELGDAWNALKAATRATELEQ-------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 102 ~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
...|+|++|++.|+++....- .....++..+.|++..|++..|...+++....+|..
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999987531 122356678889999999999999999999999865
No 182
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.85 E-value=8.7e-09 Score=52.78 Aligned_cols=42 Identities=40% Similarity=0.657 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
.+++.+|.+|..+|++++|+..|+++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666665555543
No 183
>PLN03077 Protein ECB2; Provisional
Probab=98.84 E-value=6.6e-08 Score=80.51 Aligned_cols=145 Identities=10% Similarity=-0.027 Sum_probs=88.3
Q ss_pred hhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHcCCHH
Q 029105 35 GAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--ENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~ 108 (199)
+...|+.++|+..|.+. ..|+. ..+..+-..+.+.|.+++|..+|+...+..+ .+...+..+..++.+.|+++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 33444555555554433 22222 2233333445555555555555555542211 12345566666666667777
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+|.+.+++. ...|+ +..|..+-..+...|+.+.+....+++++++|++...+..++.+|...|+++++.+..
T Consensus 643 eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 643 EAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 776666654 23444 4456555556666777777777777888889999999999999999999999887644
No 184
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.80 E-value=6.5e-08 Score=60.29 Aligned_cols=93 Identities=24% Similarity=0.195 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHHH
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE----EARDDRQTAL 169 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~ 169 (199)
+-..|..+.+.|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|++.+.+++++..+.. .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445678888999999999999999999999999999999999999999999999999999976543 4688899999
Q ss_pred HHHhhhhhhhhhccccc
Q 029105 170 HLVKRRKHLHLSGLSND 186 (199)
Q Consensus 170 ~~~~~~~~a~~~~~~~~ 186 (199)
...|+-+.|...+-++.
T Consensus 126 Rl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAA 142 (175)
T ss_pred HHhCchHHHHHhHHHHH
Confidence 99999998877665544
No 185
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=7.5e-08 Score=68.40 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=123.8
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc---------------------
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN--------------------- 85 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------------- 85 (199)
.-+|.+|+...+|..|.+.|.+. ..|......+..+..+++.+.+.+|+........
T Consensus 48 SlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 48 SLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccccc
Confidence 45789999999999999999988 7888888888888888888888888776554322
Q ss_pred ---------cCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 86 ---------LRP--ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 86 ---------~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.-| +++....+.|.+.++.|+|++|++-|+.+++...-.+..-++++.++++.+++..|++...+.+..
T Consensus 128 l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 128 LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 123 445677889999999999999999999999999989999999999999999999999988877754
Q ss_pred ----CCCc-------------------------HHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 155 ----KPDS-------------------------EEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 155 ----~p~~-------------------------~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
.|.. .++....+.++.+.++++.|..+..
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 3431 1345556667788888877766554
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1e-07 Score=66.45 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=105.2
Q ss_pred chhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc------CCCcHHHHHHHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL------RPENAVLHEQKAQVLL 102 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~ 102 (199)
...+...|+|.-.+..+.+. ..|..+.....+|.+.++.|+.+.|..+|+.+-+. -........+.+.++.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 34455566666666666555 45677888888999999999999988888844322 2234566778888888
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE---EARDDRQTAL 169 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 169 (199)
-.+++..|...+.+++..||.++.+..+.|.|.+.+|+..+|++.++.++.+.|... ....+|..+|
T Consensus 264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999998742 3344454443
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.79 E-value=2e-08 Score=51.42 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
.++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345666666666666666666666666666666666666654
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.68 E-value=1.8e-08 Score=48.34 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHhhcccccHHHHHHHHHHHHhcCChHHH
Q 029105 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKA 144 (199)
Q Consensus 114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 144 (199)
|+++|+++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555555555555444
No 189
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.67 E-value=8.9e-08 Score=69.64 Aligned_cols=137 Identities=19% Similarity=0.090 Sum_probs=108.4
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--------
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQS-------- 123 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 123 (199)
.+...+|..+...+.|+++++.|+.++.+..++ ..++..+|..+....++++|+-+..++..+...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 566778999999999999999999998874333 267889999999999999999999999887432
Q ss_pred --cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105 124 --WAEAWITLGRAQLNFGEPDKAIESFERALAIK------PDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD 194 (199)
Q Consensus 124 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 194 (199)
..-+++.++..+..+|..-.|.++.+++.++. +........++++|...|+.+.|..-+-+++.-.-..||
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence 23467889999999999999999999998774 334567788999999999998877666555543333344
No 190
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.66 E-value=1.6e-07 Score=61.93 Aligned_cols=93 Identities=16% Similarity=0.081 Sum_probs=67.1
Q ss_pred hhhhhhccccc--chhhHHHHHHHHhhHHHhccc----------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC--
Q 029105 41 NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----------FREALGKWEAALNLRPENAVLHEQKAQVLLELGD-- 106 (199)
Q Consensus 41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-- 106 (199)
++.|.+.+... .+|.+++.++.=|.++..+.+ +++|+.-|++++.++|+...++.++|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 34444444443 688888888888877766543 4678889999999999999999999999987655
Q ss_pred ---------HHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 107 ---------AWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 107 ---------~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
|++|..+|+++...+|++...+..|..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 888999999999999998765554443
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.64 E-value=2.4e-06 Score=59.63 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=89.6
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---HHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---AWI 129 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 129 (199)
.+..++..|...++.|++++|+..|+.+...+|..+ .+...++..+++.++++.|+...++-+++.|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 467899999999999999999999999999988774 78899999999999999999999999999887654 677
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHhcCCCc
Q 029105 130 TLGRAQLNF--------GEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 130 ~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~ 158 (199)
..|.+++.. .-..+|+..|++.+...|+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 888887643 22467899999999999986
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.63 E-value=2.6e-06 Score=59.06 Aligned_cols=105 Identities=35% Similarity=0.418 Sum_probs=50.6
Q ss_pred HHHhcccHHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cHHHHHHHHHHHHhcCCh
Q 029105 66 NLAEDGKFREALGKWEAALNLRP---ENAVLHEQKAQVLLELGDAWNALKAATRATELEQS-WAEAWITLGRAQLNFGEP 141 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~ 141 (199)
++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44555555555555555544443 22333334444444445555555555555555554 344555555555555555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 142 DKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
..|+..+..++...|.....+..++..+.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 55555555555555543334444444444
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.63 E-value=3.2e-06 Score=58.66 Aligned_cols=157 Identities=28% Similarity=0.252 Sum_probs=128.6
Q ss_pred hhcchhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHH-HHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ-VLLE 103 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~ 103 (199)
...+..+...+.+..+...+... ..+.....+...+......+++..++..+.+++...+.+.......+. ++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 44566667777777777776655 356677888899999999999999999999999988887666666666 8999
Q ss_pred cCCHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhhhhhhh
Q 029105 104 LGDAWNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-SEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
.|+++.|...+.+++..+| .........+..+...++++.|+..+.+++...+. ....+..++.++...+.+.++.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 9999999999999988777 45666777777788999999999999999999999 6889999999999888777766
Q ss_pred hhcccc
Q 029105 180 LSGLSN 185 (199)
Q Consensus 180 ~~~~~~ 185 (199)
......
T Consensus 223 ~~~~~~ 228 (291)
T COG0457 223 EYYEKA 228 (291)
T ss_pred HHHHHH
Confidence 654433
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.62 E-value=4.1e-08 Score=47.08 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.5
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105 79 KWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (199)
+|+++|+++|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 195
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.9e-08 Score=65.95 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
+..-|..++...+|+.|+.+|.++|.++|..+..+.+.+.|++++.+++.+.....++++++|+....++.+|.+.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34457778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccc
Q 029105 174 RRKHLHLSGLSN 185 (199)
Q Consensus 174 ~~~~a~~~~~~~ 185 (199)
.+.++.....++
T Consensus 93 ~~~eaI~~Lqra 104 (284)
T KOG4642|consen 93 GYDEAIKVLQRA 104 (284)
T ss_pred cccHHHHHHHHH
Confidence 999988766555
No 196
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=1.7e-06 Score=72.62 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=117.0
Q ss_pred hcchhhhhccchhhhhhcccccc-------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPFD-------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQ 96 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~ 96 (199)
..|.++...|++++|...+..+. ......+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 45677788999999988877651 11133466788999999999999999999998653321 246678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----cHHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQS--------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-----SEEARD 163 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~ 163 (199)
+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+++++..... ...++.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999999876321 2234567889999999999999999999876321 245567
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 029105 164 DRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 164 ~l~~~~~~~~~~~~a~~~~ 182 (199)
.++.++...|++++|....
T Consensus 617 ~la~~~~~~G~~~~A~~~l 635 (903)
T PRK04841 617 MLAKISLARGDLDNARRYL 635 (903)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 7888999999998886644
No 197
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.59 E-value=1.2e-07 Score=45.58 Aligned_cols=32 Identities=41% Similarity=0.799 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 198
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.57 E-value=3.8e-06 Score=60.94 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-LGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
+|..+.....+.+..+.|...|.++....+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344455555566667777777777765555556666677766555 4455557777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHhhhhh
Q 029105 138 FGEPDKAIESFERALAIKPDSE---EARDDRQTALHLVKRRKH 177 (199)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~ 177 (199)
.|+.+.|...|++++..-|... .+|......-...|+.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776655544 345544444444454443
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=2e-06 Score=69.08 Aligned_cols=109 Identities=26% Similarity=0.217 Sum_probs=51.7
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
.++|.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.||..+|++++|...|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34444444444455555554444444444444555555555444444433444444444444444555555555555555
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 150 RALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 150 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
+++..+|. .+....+-.+|.+.+.|.+-.
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 444444444444444444433
No 200
>PLN03077 Protein ECB2; Provisional
Probab=98.56 E-value=1.4e-06 Score=72.78 Aligned_cols=143 Identities=11% Similarity=0.024 Sum_probs=112.4
Q ss_pred hhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A 110 (199)
..|.+.|+.++|...|... +.+...|..+...|...|+.++|+..|++..+. .|+. ..+..+-..+.+.|.+++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHH
Confidence 5677889999999988876 456778999999999999999999999988764 4554 4455555678889999999
Q ss_pred HHHHHHHhhc---ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 111 LKAATRATEL---EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 111 ~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
..+|+..... .| +...+..+..++.+.|++++|.+.+++. ...|+ ...|..|-.++...++.+.+...
T Consensus 609 ~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 609 LEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred HHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence 9999998844 34 3567888999999999999999999875 45565 66677777777766666655443
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.6e-06 Score=59.72 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=111.7
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc------cccHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLR-PENAVLHEQKAQVLLELGDAWNALKAATRATELE------QSWAEAWI 129 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~ 129 (199)
..+.+.+..++.-.|.|.-.+..+.++++.+ |.++.....+|.+.++.|+.+.|..+++++-+.. .....+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 4466788899999999999999999999988 6778899999999999999999999998655432 23445677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 130 TLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 130 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+.+.+|.-.+++..|...|.+++..||.++.+..+.+.|..-+|+..+|.+..-+..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999999999999999877554433
No 202
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.55 E-value=2.4e-07 Score=44.45 Aligned_cols=33 Identities=45% Similarity=0.840 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
.+++.+|.++..+|++++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345556666666666666666666666665543
No 203
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.55 E-value=2.2e-07 Score=44.64 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 204
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.9e-06 Score=62.39 Aligned_cols=134 Identities=16% Similarity=0.086 Sum_probs=111.0
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cccc---HHHHHHHHHHH
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSW---AEAWITLGRAQ 135 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~ 135 (199)
....+.+.+..|++.+|...+++.+.-.|.+..++..--..++.+|+...-...+++++.. +|+- .-++-.++.++
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3345667788899999999999999999999988888888899999999999999999877 5543 45566778888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCC
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGD 194 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 194 (199)
.+.|-|++|.+.-.++++++|.+.-+...++.++...++++++.+ ++...+..|..|.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e-FM~~ted~Wr~s~ 243 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE-FMYKTEDDWRQSW 243 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH-HHHhcccchhhhh
Confidence 999999999999999999999999999999999999999998776 4445555555443
No 205
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=3.4e-07 Score=69.08 Aligned_cols=137 Identities=10% Similarity=0.055 Sum_probs=108.0
Q ss_pred hhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHH-HHccCCC--------cHHHHHHHHHHHHHc
Q 029105 36 AELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEA-ALNLRPE--------NAVLHEQKAQVLLEL 104 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~l~~~~~--------~~~~~~~la~~~~~~ 104 (199)
.++.+...+......+ ...+.+.++...+..++..|++.+|.+.+.. -+...|. ...+|+++|.+++++
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 4444444444444444 3335677888999999999999999988754 3343443 236689999999999
Q ss_pred CCHHHHHHHHHHHhhc---------cc---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 105 GDAWNALKAATRATEL---------EQ---------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
|.|..+..+|.++++. .| ......|+.|..|...|+.-.|.++|.+++.....+|..|..++
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999961 11 24567899999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 029105 167 TALHLV 172 (199)
Q Consensus 167 ~~~~~~ 172 (199)
.|+...
T Consensus 377 EcCima 382 (696)
T KOG2471|consen 377 ECCIMA 382 (696)
T ss_pred HHHHHH
Confidence 988754
No 206
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=2.6e-06 Score=71.62 Aligned_cols=160 Identities=17% Similarity=0.015 Sum_probs=114.5
Q ss_pred hhcchhhhhccchhhhhhcccccc----------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC-----CcHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPFD----------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP-----ENAVL 93 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~ 93 (199)
..+|.++...|++++|...+.++. .+.....+..+|.+++..|++++|...+.+++.... ....+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 355777788888888888776650 012233455778888999999999999998876532 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccccc-----------------------------------------H----HHH
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSW-----------------------------------------A----EAW 128 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------------------------------------~----~~~ 128 (199)
+..+|.++...|++++|...+.++..+.+.. . ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 6678889999999999988888875542110 0 013
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAIKP------DSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
..+|.++...|++++|+..+++++.... ....++..++.++...|+.++|.....++.+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677788889999999999999887632 22456788899999999998887766555543
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.49 E-value=1.3e-05 Score=52.35 Aligned_cols=95 Identities=31% Similarity=0.276 Sum_probs=71.4
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----------------------AVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
+...|......++...++..+.+++.+...+ ..+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3344555667778888888888888774322 145566777788899999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
+..+|.+-.++..+-.++...|+..+|+..|+++...
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877543
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.8e-06 Score=57.94 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=103.6
Q ss_pred hhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105 33 LSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 108 (199)
.++.++.+.+-|.....+...-++-..+.++|..+.. .++..+|.-+|+..-+..|..+......+.|+..+|+|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 4556666677777666666444445566666666644 357889999999999978888999999999999999999
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCcHHH
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI-ESFERALAIKPDSEEA 161 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 161 (199)
+|...++.++..++++++.+.++-.+-..+|...++. +...+....+|.++-.
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999999999999999999999886655 5557777788887754
No 209
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-06 Score=60.75 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=86.2
Q ss_pred hhcchhhhhccchhhhhhccccc----------chh----------hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF----------DAK----------QLALSFEAQGNNLAEDGKFREALGKWEAALNLRP 88 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 88 (199)
.+.|+-++..|+|.+|...|..+ ..| .....+.+++.|+...|+|-++++.....+..+|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 45699999999999999988776 222 2334678899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105 89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126 (199)
Q Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 126 (199)
.+..+++..|......=+..+|...+.++++++|.-..
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999997544
No 210
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.47 E-value=5.2e-07 Score=43.24 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.+++.+|.+++.+|++++|+.++++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665554
No 211
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.46 E-value=2e-07 Score=67.15 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=91.5
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
-....+.-.+..|.++.|++.|..++.++|....++...+.++.++++...|+..|..++.++|+...-+-..|.+...+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 34445666678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 029105 139 GEPDKAIESFERALAIKPD 157 (199)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~ 157 (199)
|++++|...+..+.+++-+
T Consensus 196 g~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hchHHHHHHHHHHHhcccc
Confidence 9999999999999998754
No 212
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2.8e-05 Score=58.98 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=110.2
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
.-+...|...|.--..++++..|...|++++..+..+..+|...+.+-++.+....|...+.+|+.+-|.--..|+....
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34566788888888899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
+-..+|+...|.+.|++-+...|+ ..+|......-.+.+..+.|..
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH
Confidence 888999999999999999999997 5667766666666666666544
No 213
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=7.1e-06 Score=66.05 Aligned_cols=135 Identities=16% Similarity=-0.004 Sum_probs=114.2
Q ss_pred hhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105 36 AELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (199)
...+++.+|+....+. ..|+..-+....|..+++.|+.++|..+++..-...+++...+-.+-.||..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4556788888888877 78888888889999999999999999999888888888888899999999999999999999
Q ss_pred HHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 114 ATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
|++++..+|+ .+..+.+=.+|.+.+.|.+-.+.--+..+.-|.++-.......+...
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 9999999999 88888888999999998776666666666778887765555555443
No 214
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=5.1e-06 Score=60.70 Aligned_cols=85 Identities=25% Similarity=0.229 Sum_probs=72.3
Q ss_pred HHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105 67 LAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 67 ~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 145 (199)
+....+|..|+..++-....+.... .....+|.|+++.|+|++|+..|.-+...+.-+.+.+.+++.|++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3456789999999888776655443 677889999999999999999999999877778899999999999999999998
Q ss_pred HHHHHH
Q 029105 146 ESFERA 151 (199)
Q Consensus 146 ~~~~~a 151 (199)
....++
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 876655
No 215
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.38 E-value=6.5e-06 Score=69.18 Aligned_cols=135 Identities=13% Similarity=-0.023 Sum_probs=114.6
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGRA 134 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 134 (199)
..++..+..+|...+++++|.+.++..++........|..+|..++.+++-++|...+.+|+..-|. +.+.....|..
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 3456677888888899999999999999888888899999999999999999999999999999887 77788888999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105 135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFV 191 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (199)
.++.|+.+.+...|+..+.-+|...+.|..+.+.-...|+.+.+...+.+..+..|.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998888888877777766655555544443
No 216
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.4e-06 Score=62.66 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=85.7
Q ss_pred hhcchhhhhccchhhhhhccccc-----chhh-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-----DAKQ-LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
-..|+-+++..+|..|+..|... .+|+ ++..+.+.+.+.+..|+|..|+..+.+++.++|.+..+++.-+.|++
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 35699999999999999999877 3443 56677899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhccccc
Q 029105 103 ELGDAWNALKAATRATELEQSW 124 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~ 124 (199)
.+.++..|..+++..+.++...
T Consensus 165 eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999998876543
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1.2e-05 Score=58.45 Aligned_cols=150 Identities=13% Similarity=-0.098 Sum_probs=106.0
Q ss_pred hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-CCCc---HHHHHHHHHHHHHcCCHHHH
Q 029105 37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-RPEN---AVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~---~~~~~~la~~~~~~~~~~~A 110 (199)
..|++.+|.....+. ..|.+.-++..--.+++..|+...-...+++.+-. +|+- ..+.-.++-++.+.|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344555544444444 66777777777778888888888888888888766 5555 34555667778888888888
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS----EEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
.+..+++++++|.+.-+...++.++...|++.++.+...+.-..-... ..-|...+.++.+-+.++.|...+-..+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 888888888888888888888888888888888888776653332211 1125566777777777877776554333
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.7e-05 Score=54.35 Aligned_cols=125 Identities=26% Similarity=0.174 Sum_probs=73.1
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-HHHHHHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-AEAWITLGRAQL 136 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~ 136 (199)
..-+..+......|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...-....+. .......-..+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3445556677888999999999999999999999999999999999999888877665432211111 000000111222
Q ss_pred hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 137 NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 137 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+.....+. ..+++.+..+|++.++...++..+...|+.++|....+
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22222211 22334444555555555555555555555555554443
No 219
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.32 E-value=0.0001 Score=54.49 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=58.2
Q ss_pred hhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-cHHHHHHHHHHHHhcCChH
Q 029105 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS-WAEAWITLGRAQLNFGEPD 142 (199)
Q Consensus 64 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~ 142 (199)
|..-+..|+|.+|.....+.-+-.+....++..-+....++|+++.|-.++.++-+.-++ ........+.+....|+++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 333444455555555555544444444444444445555555555555555555555221 2233444455555555555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
.|..-..+++...|.++++..-...+|...|.+.+
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 55555555555555555555555555555555544
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.26 E-value=6.2e-06 Score=60.35 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=125.4
Q ss_pred hhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQ 99 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~ 99 (199)
.+...+|.|++++..-... +....-.++.+++..+....+|.+++.+.+..+.+-...+ .....+|.
T Consensus 51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~ 130 (518)
T KOG1941|consen 51 TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGN 130 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHH
Confidence 4556677777766542221 2223456788899999999999999988888776643332 56777899
Q ss_pred HHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----------cHHHHH
Q 029105 100 VLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPD----------SEEARD 163 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~ 163 (199)
.+.-++.++++++.|+++++...++ ..+...+|..+..+.++++|+-+..++.++... ...+.+
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 9999999999999999999874432 346788999999999999999998888877432 134678
Q ss_pred HHHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105 164 DRQTALHLVKRRKHLHLSGLSNDANRFVVGDKT 196 (199)
Q Consensus 164 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (199)
.++.++..+|+..+|.+..-.++......||..
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 899999999999999988888887777777753
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=8e-05 Score=51.83 Aligned_cols=128 Identities=22% Similarity=0.157 Sum_probs=90.5
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----cccH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELE-----QSWA 125 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 125 (199)
+..+..-+.++....+|++|..++.++++-..++ +..+-..+....++..+.++...++++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455566777788888999888888888554443 2445566777778888899999998888763 4444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
..-...+--..+.-++++|++.|++++.+-..+ .+.+...+.++.+..++.+|..+.+.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 444455555667778889999998888764332 23466677888888888888776654
No 222
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.24 E-value=3.6e-05 Score=55.89 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=99.6
Q ss_pred hccchhhhhhccccc--chhhHHHHHHHHhhHHHh-cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105 37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAE-DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKA 113 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (199)
+.+..+.|...|.++ ..+....++...|.+-+. .++.+.|...|+.+++..|.+..+|......+...++.+.|...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344466777777777 334467788888988666 57777799999999999999999999999999999999999999
Q ss_pred HHHHhhcccccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 114 ATRATELEQSWA---EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 114 ~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
|++++..-|... ..|......-...|+.+......+++.+..|.....
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999998876544 578888888889999999999999999998885543
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.17 E-value=3.9e-05 Score=58.49 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=83.9
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------------------
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS------------------ 123 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------ 123 (199)
.+-.-..+..+...-++.-.+|++++|+.+.++..|+.- ......+|...++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 334444567788888888889999999888888888752 233456666666666543110
Q ss_pred -------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhhhhhhhh
Q 029105 124 -------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 124 -------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
...+...+|.|..++|+.++|++.++..++..|. +..++.+|..++..++.+.++..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0224567888888999999999999999887775 45678888888888888887654
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.16 E-value=4.1e-06 Score=40.06 Aligned_cols=30 Identities=37% Similarity=0.721 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKP 156 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 156 (199)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=6.7e-05 Score=51.85 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=83.3
Q ss_pred chhhhhccchhhhhhccccc-------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------HHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF-------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------VLHEQKA 98 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la 98 (199)
|+.+--..+++.|-..|.++ ....+....+.-+.-.++.++.++|+.++++++++..+-. ..+..+|
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 34444444555555444443 2222333333333334455689999999999988866543 3344778
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105 99 QVLLEL-GDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 99 ~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (199)
.+|-.. .++++|+.+|+++-+-... .-..+...+..-..+++|.+|+..|+++....-++.
T Consensus 121 EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 887654 8899999999998865432 223556667777788999999999999887765554
No 226
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=7.7e-05 Score=56.68 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=87.9
Q ss_pred ccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029105 38 LEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115 (199)
Q Consensus 38 ~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (199)
.+++..|...|..+ .+..+...|...+.+-++..+...|...+.+++.+-|.-..+|+-.-.+--..|+...|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34445555555555 3344566777788888888888888888888888888777777777777777777777777777
Q ss_pred HHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 116 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 178 (199)
+-+...|+ ..+|...-..-...+..+.|...|++-+-.+|+ ...|...+..-...|...-+
T Consensus 166 rW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 166 RWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHH
Confidence 77777765 345555544445555555566666655555554 33344444444444443333
No 227
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.13 E-value=1.3e-06 Score=65.76 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=98.3
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
+.+...+..+.++.|+..|.++ .+|+.+..+...+..+...++|..|+..+.++++.+|....+|+..|......+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 4467778888999999999999 88889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
.+|+..|++...+.|+.+.+...+-.|-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 99999999999999999998877766644
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.00014 Score=48.82 Aligned_cols=100 Identities=21% Similarity=0.137 Sum_probs=79.1
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
+...++..+...+++++|+..++.++....+. +.+-.++|.+...+|++++|+..+...-... -.+..-...|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHH
Confidence 45567888899999999999999998764443 3567889999999999999999886654321 1233456789999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcH
Q 029105 136 LNFGEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~ 159 (199)
...|+-++|...|++++...++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCChH
Confidence 999999999999999999985543
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.11 E-value=7.8e-05 Score=58.06 Aligned_cols=106 Identities=21% Similarity=0.166 Sum_probs=89.8
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc----HHHHHHHHHHHHhcCChHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW----AEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~ 145 (199)
....+.|.+.+.......|+.....+..|.++...|+.++|++.+++++...... .-.++.+|.++..++++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999998654433 235788999999999999999
Q ss_pred HHHHHHHhcCCCc-HHHHHHHHHHHHHHhhh
Q 029105 146 ESFERALAIKPDS-EEARDDRQTALHLVKRR 175 (199)
Q Consensus 146 ~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~ 175 (199)
.+|.+.++.+.-. .-..+..|.|+...++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999876543 34456677888888888
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.09 E-value=4.6e-05 Score=59.28 Aligned_cols=115 Identities=19% Similarity=0.074 Sum_probs=91.6
Q ss_pred hhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 029105 41 NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLELGDAWNALKAA 114 (199)
Q Consensus 41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~ 114 (199)
.+.|.+..... ..|+.+-.++..|+++...|+.++|++.|++++.....- ..+++.+|.++..+.+|++|..++
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 34444444444 568888899999999999999999999999988543332 367788999999999999999999
Q ss_pred HHHhhccccc-HHHHHHHHHHHHhcCCh-------HHHHHHHHHHHhcC
Q 029105 115 TRATELEQSW-AEAWITLGRAQLNFGEP-------DKAIESFERALAIK 155 (199)
Q Consensus 115 ~~al~~~p~~-~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~ 155 (199)
.+..+.+.-. .-..|..|.|+...|+. ++|...|.++-..-
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999876543 33456788899999999 88888888776543
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.09 E-value=9.3e-06 Score=38.77 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666677777777777777776666663
No 232
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.09 E-value=2.2e-05 Score=60.91 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=94.0
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHH
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKA 144 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 144 (199)
.....|+...|+.++..++...|... ....++|.++.+-|-...|-..+.+++.+....|-.++.+|.++..+.+.+.|
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 33557999999999999999988654 44789999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 145 IESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
++.|+++++.+|+++.+...|-.+.+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999998877776665
No 233
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=98.02 E-value=0.00014 Score=44.34 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=64.7
Q ss_pred HhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHhhcccccHHHH
Q 029105 63 QGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGD-----------AWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 128 (199)
++..++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35667888888888888888888877765 445556666654432 3456777777777777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777666666677777777776655
No 234
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=98.00 E-value=8.4e-05 Score=44.16 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHhhhhhhh
Q 029105 111 LKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS--EEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 111 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~ 179 (199)
+..+++.+..+|++..+.+.+|..+...|++++|++.+..+++.++++ ..+...+-.++..+|.-+...
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 455666667777777777777777777777777777777777776654 556666666666666654433
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.00 E-value=8.2e-05 Score=56.79 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=68.5
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--NAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAEAWITLGR 133 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 133 (199)
..+...+|.|..+.|+.++|++.++..++..|. +..++.++..++...+.|.++...+.+--.+ -|+.....+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334566788888888888888888888876664 3467788888888888888887777775433 2444544444444
Q ss_pred HHHh-cCC---------------hHHHHHHHHHHHhcCCCcHHH
Q 029105 134 AQLN-FGE---------------PDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 134 ~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~ 161 (199)
.-.+ .++ -..|.+.+.+|++.+|..+..
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 3322 111 123567788888888776654
No 236
>PRK10941 hypothetical protein; Provisional
Probab=97.97 E-value=0.00023 Score=51.13 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
....++=.++...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..-..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 455677778889999999999999999999999999999999999999999999999999999999887654433
No 237
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.97 E-value=9.7e-05 Score=39.01 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
.++.+|..+.++|+|++|..+.+.+++++|++.++......+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4556666666666666666666666666666666554444433
No 238
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00025 Score=54.21 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 029105 75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE-PDKAIESFERALA 153 (199)
Q Consensus 75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~ 153 (199)
.-...|+.+....+.++.+|........+.+.+.+--.+|.+++..+|+++..|..-|...+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678899999999999999998888888889999999999999999999999999998888776 8999999999999
Q ss_pred cCCCcHHHHHHHH
Q 029105 154 IKPDSEEARDDRQ 166 (199)
Q Consensus 154 ~~p~~~~~~~~l~ 166 (199)
.+|+++..|...-
T Consensus 169 ~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 169 FNPDSPKLWKEYF 181 (568)
T ss_pred cCCCChHHHHHHH
Confidence 9999998776543
No 239
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.93 E-value=0.00015 Score=61.45 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=108.8
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHcCCHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--NAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~ 108 (199)
.+|...+.+++|.+.++.. ...+...+|..+|..++++.+-+.|...+.+|+..-|. +..+..-.|++-++.|+.+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 4555666677777776655 33356788999999999999999999999999999998 7788889999999999999
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
.+...|+-.+..+|.-.+.|.-+...-...|+.+.....|++++.+.
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999875
No 240
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=1.8e-05 Score=60.10 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=87.3
Q ss_pred chhhhhccchhhhhhccccc---------chhhH--HHHHHHHhhHHHhcccHHHHHHHHHHHHcc---------CC---
Q 029105 32 GLSGAELEKNDDNNEHQEPF---------DAKQL--ALSFEAQGNNLAEDGKFREALGKWEAALNL---------RP--- 88 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~~--- 88 (199)
...++..|++.+|.+.+... ..|.- -..+.++|.++++.|.|.-+..+|.++++. .|
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 56677889999999877655 23332 235678999999999999999999999851 11
Q ss_pred ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 89 ------ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 89 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
....+.++.|..+...|+.-.|.++|.+++.....+|..|..++.|++.
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1247889999999999999999999999999999999999999998863
No 241
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.92 E-value=7e-05 Score=53.90 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=67.8
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
+..-...+.-....|+.++|...|+-++.+.|++++++..+|......++.-+|-++|-+++.++|.+.+++.+.+..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 334455666678889999999999999999999999999999999999999999999999999999999988877653
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.92 E-value=0.00017 Score=47.02 Aligned_cols=65 Identities=25% Similarity=0.244 Sum_probs=56.4
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
...++..++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++....
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999999999999999999999999887654
No 243
>PRK10941 hypothetical protein; Provisional
Probab=97.91 E-value=0.00026 Score=50.89 Aligned_cols=78 Identities=17% Similarity=0.100 Sum_probs=70.0
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
...+.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|...++.-++..|+++.+-.....+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345667788899999999999999999999999999999999999999999999999999999999998876655443
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.87 E-value=3.1e-05 Score=36.57 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
No 245
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.86 E-value=0.00011 Score=52.95 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
...+.-..+.|+.++|...|+.++.+.|++++++...|......++.-+|-++|-+++.++|.+.+++.+.++.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 44455567899999999999999999999999999999999999999999999999999999999988776654
No 246
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.86 E-value=0.00012 Score=38.61 Aligned_cols=42 Identities=17% Similarity=-0.087 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
++++.+|..+++.|+|++|..+++.++++.|++.++......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356677777778888888888888888888877776554443
No 247
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00023 Score=54.87 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHhhcccccHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE---LGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
.-|...+....-|+--+..+.+..|+..|.+++...|....++.+.+.++++ .|+.-.|+..+..+++++|....+|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 4466777778888888888899999999999999999999999999988886 3567788999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (199)
+.++.++..++++.+|+++-..+....|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999998887777777543
No 248
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.83 E-value=3.4e-05 Score=37.38 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=9.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 029105 95 EQKAQVLLELGDAWNALKAATR 116 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~ 116 (199)
.++|.++...|+|++|+.+|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0024 Score=44.47 Aligned_cols=124 Identities=14% Similarity=0.047 Sum_probs=86.0
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccC----C-Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH-----
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLR----P-EN-AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE----- 126 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~-~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----- 126 (199)
+.+..-|+.|....+|+.|-..|.++.... . ++ ...+...+.||. ..+.++|+.++++++++..+-..
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334445666666777777777777765432 2 22 355666666664 56999999999999999765433
Q ss_pred -HHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 127 -AWITLGRAQLNF-GEPDKAIESFERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 127 -~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
.+..+|.+|..- .++++|+.+|+++-+..... ..++.-.+.....+++|.+|...+
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355889888765 89999999999998775443 234555666667788888876643
No 250
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.80 E-value=5.6e-05 Score=35.64 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
++.+|.++...|++++|+..+++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444444444555555555444444443
No 251
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.79 E-value=4.1e-05 Score=55.65 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=83.4
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 110 (199)
.-.+..|.+++|++.|..+ .+|..+..+...+.++...+++..|+..+..++.++|+...-+...|.....+|+|.+|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 3455678899999999988 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc
Q 029105 111 LKAATRATELEQS 123 (199)
Q Consensus 111 ~~~~~~al~~~p~ 123 (199)
...+..+.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999998654
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.78 E-value=5.1e-05 Score=36.76 Aligned_cols=28 Identities=46% Similarity=0.597 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
++.++|.+|..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999996644
No 253
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.76 E-value=0.0041 Score=40.83 Aligned_cols=108 Identities=19% Similarity=0.083 Sum_probs=88.3
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
....+..+..+-...++.+++...+...--+.|..+.+-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34566677777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
..+|+..-=. +-.+++...+ ++.+...+
T Consensus 89 ~~~~D~~Wr~-~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 89 YALGDPSWRR-YADEVLESGA-DPDARALV 116 (160)
T ss_pred HHcCChHHHH-HHHHHHhcCC-ChHHHHHH
Confidence 9999987532 2334555544 45544333
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.76 E-value=0.0029 Score=47.53 Aligned_cols=90 Identities=12% Similarity=-0.017 Sum_probs=46.5
Q ss_pred hhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHh---cccHHHHHHHHHH-HHccCCCcHHHHHHHHHHHHH
Q 029105 34 SGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAE---DGKFREALGKWEA-ALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-~l~~~~~~~~~~~~la~~~~~ 103 (199)
+|....+|+.-+...+.. ..+..+.+...+|.++-+ .|+.++|+..+.. .....+.+++.+..+|.+|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 444445555544444433 123344455555555555 5666666666655 334444555556666655532
Q ss_pred ---------cCCHHHHHHHHHHHhhcccc
Q 029105 104 ---------LGDAWNALKAATRATELEQS 123 (199)
Q Consensus 104 ---------~~~~~~A~~~~~~al~~~p~ 123 (199)
....++|+..|.++.+++|+
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 12255566666666666543
No 255
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.74 E-value=0.002 Score=47.14 Aligned_cols=129 Identities=21% Similarity=0.093 Sum_probs=97.5
Q ss_pred chhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHcC-------CH
Q 029105 40 KNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPEN-AVLHEQKAQVLLELG-------DA 107 (199)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~-------~~ 107 (199)
+..+|...|........+.+.+.+|.++.. ..+..+|..+|+++....... ....+.+|.++..-. +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 466777777766666677788889998887 458999999999998875444 344778888876541 23
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
..|+..|.++.... ++.+.+.+|.+|.. ..++.+|..+|.++.+... ..+...++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 37888888887764 67788999988865 3478999999999998877 77788888 555555
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.74 E-value=0.00085 Score=39.85 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=49.5
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--HHHHHHHHHHHHhcCChH
Q 029105 76 ALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW--AEAWITLGRAQLNFGEPD 142 (199)
Q Consensus 76 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~ 142 (199)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3566788899999999999999999999999999999999999998865 445455555555555443
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.73 E-value=0.003 Score=47.38 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cc-----
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP----ENAVLHEQKAQVLLELGDAWNALKAATRATEL-EQ----- 122 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p----- 122 (199)
.......+...+.+....|.++.|...+.++....+ ..+.+.+..+..+...|+..+|+..++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445677899999999999999999999999887652 24677888999999999999999999888871 00
Q ss_pred ----------------------------ccHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 123 ----------------------------SWAEAWITLGRAQLNF------GEPDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 123 ----------------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
....++..+|...... +..++++..|.+++..+|....+|..+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1234567777777777 888999999999999999999999999988
Q ss_pred HHHHhhhh
Q 029105 169 LHLVKRRK 176 (199)
Q Consensus 169 ~~~~~~~~ 176 (199)
+...-..+
T Consensus 302 ~~~~~~~~ 309 (352)
T PF02259_consen 302 NDKLLESD 309 (352)
T ss_pred HHHHHHhh
Confidence 87764433
No 258
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.72 E-value=0.0033 Score=38.91 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=68.0
Q ss_pred hhHHHhcccHHHHHHHHHHHHccCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------cccc
Q 029105 64 GNNLAEDGKFREALGKWEAALNLRPE------------NAVLHEQKAQVLLELGDAWNALKAATRATEL-------EQSW 124 (199)
Q Consensus 64 ~~~~~~~~~~~~A~~~~~~~l~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~ 124 (199)
|.-.+..|-|++|...++++++.... +..++-.|+..+..+|+|++++....+++.. +.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 34456678899999999999876432 2467888999999999999999888887754 4444
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 125 AE----AWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 125 ~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.. +.+..|..+..+|+.++|+..|+.+.+.
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43 4568899999999999999999987653
No 259
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.71 E-value=0.0049 Score=48.95 Aligned_cols=130 Identities=14% Similarity=0.081 Sum_probs=100.4
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc---------
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPE----NAVLHEQKAQVLLELGDAWNALKAATRATELEQ--------- 122 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------- 122 (199)
....|..+|..|...|+.+.|...|+++....-. -..+|...|..-....+++.|+.+.+++...-.
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 3457788888899999999999999988876432 257788888888888888999888888876511
Q ss_pred ---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 123 ---------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 123 ---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
.+...|..++......|-++.....|.+++.+.--.|.+..|.|..+....-++++.+.+-..
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 123467777777778888888888888888888888888888888888888888877655433
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.65 E-value=0.002 Score=42.28 Aligned_cols=85 Identities=18% Similarity=0.049 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
..+..+..+-...++.+.+...+..+-.+.|..+..-..-|.++...|++.+|+..++.+....|..+.+...++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44556666677888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhhh
Q 029105 172 VKRRK 176 (199)
Q Consensus 172 ~~~~~ 176 (199)
+++..
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 88754
No 261
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.62 E-value=0.00012 Score=33.85 Aligned_cols=31 Identities=42% Similarity=0.750 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
++..+|.++..+|+++.|+.+++++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555553
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0016 Score=45.62 Aligned_cols=93 Identities=19% Similarity=0.126 Sum_probs=40.7
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------ccccHHHHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATEL------EQSWAEAWI 129 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~ 129 (199)
..+.-....-++++|+..|++++.+-..+ ...+...++++.+..++.+|-..+.+-... .|+....+.
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence 33333344445555555555544432211 133334445555555555554444332221 122222333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 130 TLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 130 ~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
....+|....+|..|..+++..-++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcC
Confidence 3334444445555555555554443
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.53 E-value=0.0021 Score=51.39 Aligned_cols=127 Identities=17% Similarity=-0.017 Sum_probs=86.8
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhHHHhc-----ccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcC-----
Q 029105 41 NDDNNEHQEPFDAKQLALSFEAQGNNLAED-----GKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELG----- 105 (199)
Q Consensus 41 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~----- 105 (199)
...+...++.+....+..+...+|.+++.- .+.+.|+.+++.+... .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 445666666665556677777778777654 6788888888887661 1114556777888887643
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFG---EPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
++..|+.++.++-.. +++.+.+.+|.++..-. ++..|..+|..|... .+..+...++.|+..
T Consensus 308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 567788888887765 44567788888877655 567888888877653 456677777777654
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0034 Score=45.15 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
...-..-+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+...
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3445566777788999999999999999999999999999999999999999998877654
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.47 E-value=0.0098 Score=37.76 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 91 AVLHEQKAQVLLELG---DAWNALKAATRATE-LEQS-WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 91 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
....++++.++.... +..+.+.+++..+. -+|. .-+..+.++..+.+.++|+.++.+....++.+|++.++...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455667777776543 45677788888875 4443 345677788888888888888888888888888888776555
Q ss_pred HHHHHH
Q 029105 166 QTALHL 171 (199)
Q Consensus 166 ~~~~~~ 171 (199)
-.+..+
T Consensus 112 ~~ied~ 117 (149)
T KOG3364|consen 112 ETIEDK 117 (149)
T ss_pred HHHHHH
Confidence 444443
No 266
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.46 E-value=0.00026 Score=32.58 Aligned_cols=30 Identities=30% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQ 122 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 122 (199)
++..+|.++...++++.|+..+++++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 345555555555555555555555555544
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.45 E-value=0.0055 Score=46.09 Aligned_cols=118 Identities=20% Similarity=0.110 Sum_probs=89.9
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HhhcccccHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNL----RPENAVLHEQKAQVLLE---LGDAWNALKAATR-ATELEQSWAEA 127 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~ 127 (199)
.+.+...+-..|....+|+.-+..++..-.+ -++.+.+...+|.++-+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455666777788899999998888887665 44556777888888888 9999999999999 44556778999
Q ss_pred HHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 128 WITLGRAQLNF---------GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 128 ~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
+..+|.+|... ...++|+.+|.++.+++|+.- .=.|++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCC
Confidence 99999998642 246899999999999997642 23455555555554
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.45 E-value=0.0044 Score=46.75 Aligned_cols=124 Identities=16% Similarity=-0.013 Sum_probs=91.7
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------------C------------CCcH---HHHHHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------------R------------PENA---VLHEQKAQVLL 102 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------~------------~~~~---~~~~~la~~~~ 102 (199)
..|.+..++..++.++..+|+.+.|.+.+++++-. + +.|- .+.+.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999988632 1 1121 44556677888
Q ss_pred HcCCHHHHHHHHHHHhhcccc-cHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHhhh
Q 029105 103 ELGDAWNALKAATRATELEQS-WAEA-WITLGRAQLNFGEPDKAIESFERALAIKP-----DSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~ 175 (199)
+.|.+..|+++++-.+.++|. +|-. .+.+=....+.++++-=++.++....... .-|..-+.++.++..+++.
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 999999999999999999998 6643 44444455677888877777776554211 1234556777778777777
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.0012 Score=44.62 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=74.8
Q ss_pred hhcchhhhhccchhhhhhccccc-chhh----HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-DAKQ----LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
..++..+...+++++|+..+..+ ..|. .+-+-..++.+...+|++++|+..+.....- .-.+..-...|.++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence 46677888899999999998866 2222 3445678999999999999999888765332 1123456778999999
Q ss_pred cCCHHHHHHHHHHHhhcccccH
Q 029105 104 LGDAWNALKAATRATELEQSWA 125 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~ 125 (199)
.|+-.+|...|++++...++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 172 KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred cCchHHHHHHHHHHHHccCChH
Confidence 9999999999999999975543
No 270
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.38 E-value=0.0004 Score=48.00 Aligned_cols=59 Identities=27% Similarity=0.180 Sum_probs=43.1
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW 124 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 124 (199)
.....++.+.|.+.|.+++.+.|....-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44556777777777777777777777777777777777777777777777777777764
No 271
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0024 Score=52.17 Aligned_cols=116 Identities=26% Similarity=0.198 Sum_probs=83.2
Q ss_pred ccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHH----------HccCC----------CcHHHHHHH
Q 029105 38 LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAA----------LNLRP----------ENAVLHEQK 97 (199)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~~----------~~~~~~~~l 97 (199)
.|.+++|.+.-+.-+.-..-..+++.+.-+...++.+.|+++|+++ +.-+| .++.+|...
T Consensus 839 ~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WW 918 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWW 918 (1416)
T ss_pred cccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHH
Confidence 3444444444333222223456788899999999999999999875 22233 235678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc---------------------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 98 AQVLLELGDAWNALKAATRATEL---------------------EQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
|..+-..|+.+.|+.+|..|-.. ...+..+-|.+|..|...|++.+|+..|.++-.
T Consensus 919 gqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 919 GQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998876532 134566789999999999999999988876643
No 272
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.35 E-value=0.0015 Score=49.12 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCc------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPEN------------------AVLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.-|...+++++|..|...|..++++..+- ..+-..+..||..+++.+-|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 34455566666666666666666542110 022234555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
+..-+...|.|+..+.+|.+|-..+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554433
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.33 E-value=0.0048 Score=46.28 Aligned_cols=128 Identities=22% Similarity=0.194 Sum_probs=97.2
Q ss_pred hcchhhhhccchhhhhhcccccch------hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-CC-C------------
Q 029105 30 EHGLSGAELEKNDDNNEHQEPFDA------KQLALSFEAQGNNLAEDGKFREALGKWEAALNL-RP-E------------ 89 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~-~------------ 89 (199)
..+....+.|.++.|...+..+.. +..+.+....+..+...|+..+|+..++..+.. .. .
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSG 230 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhc
Confidence 346667778899988887776622 226788889999999999999999999888771 10 0
Q ss_pred --------------------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh--
Q 029105 90 --------------------NAVLHEQKAQVLLEL------GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP-- 141 (199)
Q Consensus 90 --------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-- 141 (199)
...++..+|...... +..++++..|.+++..+|....+|+.+|..+...-..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 231 LLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence 025666677777777 8899999999999999999999999999887654211
Q ss_pred ---------------HHHHHHHHHHHhcCCC
Q 029105 142 ---------------DKAIESFERALAIKPD 157 (199)
Q Consensus 142 ---------------~~A~~~~~~al~~~p~ 157 (199)
..|+..|-+++...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 311 REKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 3477777777777776
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.30 E-value=0.0023 Score=50.30 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=86.3
Q ss_pred HHHhhHH-HhcccHHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 61 EAQGNNL-AEDGKFREALGKWEAALNLRPENA--VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 61 ~~~~~~~-~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
..++..| ..+|+..+|+.++..++-..|.+. .+...+|.++.++|...+|--++..|+.-.|.-...++.+|.++..
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am 295 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM 295 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH
Confidence 3444444 567999999999999998877664 5778899999999999999989988888777766678999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHH
Q 029105 138 FGEPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
++.+......|..+.+.+|......
T Consensus 296 l~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 296 LGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred HhhhhhhhhhhhhhhccCcchhHHH
Confidence 9999999999999999999875543
No 275
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0051 Score=48.83 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=83.4
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.++.+-|.-+++..+|..++++|...+..-|.+ +.....++.||....+.+.|.+++++|-+.+|.++-.....
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 456677888899999999999999998877665 46678899999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 029105 132 GRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~ 154 (199)
-.+....|.-++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888889999999888776654
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.025 Score=37.77 Aligned_cols=140 Identities=16% Similarity=0.088 Sum_probs=101.2
Q ss_pred chhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLE 103 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~ 103 (199)
+..+.+.+..++|+.-|..+ ....-.-+....+.+....|+-..|+..|..+-.-.|-. ..+...-+..+..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 45556677788888877766 222235567788999999999999999999976654432 1334455667778
Q ss_pred cCCHHHHHHHHHHHh-hcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 104 LGDAWNALKAATRAT-ELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 104 ~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
.|.|+.-..-.+..- .-+|-...+.-.||..-.+.|++..|.++|.+... +...|....+.+.+...+
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 899988766554433 23455566788899999999999999999998877 666667677777766543
No 277
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.026 Score=43.57 Aligned_cols=155 Identities=12% Similarity=-0.037 Sum_probs=105.1
Q ss_pred hhhhhccchhhhhhccccc-----ch-------hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF-----DA-------KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQK 97 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l 97 (199)
....-.|++.+|++..... .. ...+.++..+|.-...-+.++.|...|..+.+..... +.+..++
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 3445578888888765444 12 2356677788888888889999999999888764432 3556778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccc-------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHHHH
Q 029105 98 AQVLLELGDAWNALKAATRATELEQS-------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEARDD 164 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~ 164 (199)
|.+|...|+-+.-.+.++.+-..+.. ...+++..|...+.++++.+|.....+.++.... ....+..
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 99999888765554444443322211 1335677788888899999999999998887621 1234566
Q ss_pred HHHHHHHHhhhhhhhhhcccccc
Q 029105 165 RQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 165 l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
|+.+..-.|+..++..-..+++.
T Consensus 491 Ls~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHhcchHHHHhccchHHH
Confidence 77777788888887766655544
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.24 E-value=0.012 Score=39.73 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--ccH--
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQ--SWA-- 125 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~-- 125 (199)
....-.++..+|..|.+.|+.+.|++.|.++....... ...+..+-.+.+..+++.....+..++-..-. .++
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 33456788899999999999999999999987765433 36677788888889999999999888876532 222
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 126 --EAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 126 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
.....-|..++..++|..|-..|-.+..-.
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 234556777888999999999988776544
No 279
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.20 E-value=0.00079 Score=46.59 Aligned_cols=56 Identities=36% Similarity=0.582 Sum_probs=29.8
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
+.++.+.|.+.|.+++.+.|.+...|+.+|......|+++.|.+.|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555555555555555555555555555555555555555555543
No 280
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.19 E-value=0.0064 Score=37.23 Aligned_cols=87 Identities=20% Similarity=0.138 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccH---HHHHHHHHHHHhcCC-----------hHHHHHHHHHHHhcCCCcHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQSWA---EAWITLGRAQLNFGE-----------PDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 162 (199)
++.-++..|++-+|+++.+..+..++++. ..+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999988765 556677887765432 2468999999999999998888
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 029105 163 DDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+.+|.=+.-...|+++.....
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 888877666666776655443
No 281
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.18 E-value=0.019 Score=42.81 Aligned_cols=141 Identities=11% Similarity=-0.106 Sum_probs=103.7
Q ss_pred chhhHHHHHHHHhhHHHhc------------ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 52 DAKQLALSFEAQGNNLAED------------GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
.+|.+..+|..+....-.. .-.+.-+..+++|++.+|++..++..+-.+..+.-+.++...-+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5778888887776554332 1245667889999999999999999988888899999999999999999
Q ss_pred cccccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCC------------------cHHHHHHHHHHHHHHhhhhhh
Q 029105 120 LEQSWAEAWITLGRAQLN---FGEPDKAIESFERALAIKPD------------------SEEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 120 ~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~a 178 (199)
.+|+++..|...-..... .-.++.....|.+++..-.. -..+...+.......|..+.|
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 999999988766554433 33466777777777754210 012456666667788888888
Q ss_pred hhhcccccchhhhc
Q 029105 179 HLSGLSNDANRFVV 192 (199)
Q Consensus 179 ~~~~~~~~~~~~~~ 192 (199)
.....+.+|.++-.
T Consensus 174 va~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 174 VALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHHHcCC
Confidence 88777777766643
No 282
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.017 Score=45.41 Aligned_cols=110 Identities=25% Similarity=0.114 Sum_probs=90.7
Q ss_pred HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhcccccHHHHHHH------HHHH
Q 029105 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR-ATELEQSWAEAWITL------GRAQ 135 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------g~~~ 135 (199)
++..+...+....+.-.+..++..+|.+..+..++|......|....++..+.. +....|++......+ |...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 577778888998999999999999999999999999998887777666655554 888889887766555 8888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
..+|+..++....++++.+.|.++.....+.....+.
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 8899999999999999999999987766666554433
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.15 E-value=0.029 Score=36.37 Aligned_cols=86 Identities=13% Similarity=-0.042 Sum_probs=73.7
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
..+......-...++++++...+...--+.|+.+.+-..-|.++...|+|.+|+..++.+..-.+..+-..-.++.|+.-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34445555556689999999999988889999999999999999999999999999999998888888888889999999
Q ss_pred cCChHH
Q 029105 138 FGEPDK 143 (199)
Q Consensus 138 ~~~~~~ 143 (199)
+|+.+-
T Consensus 91 l~Dp~W 96 (153)
T TIGR02561 91 KGDAEW 96 (153)
T ss_pred cCChHH
Confidence 998864
No 284
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.15 E-value=0.013 Score=37.97 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
.......-...++.+.+...+...--+.|+.+.....-|.++...|++.+|+..++....-.+..+.....++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444444558999999999988888999999999999999999999999999999999998888988889999998888
Q ss_pred hhh
Q 029105 174 RRK 176 (199)
Q Consensus 174 ~~~ 176 (199)
+..
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 754
No 285
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.14 E-value=0.016 Score=40.36 Aligned_cols=91 Identities=26% Similarity=0.282 Sum_probs=64.9
Q ss_pred HhcccHHHHHHHHHHHHcc----CCC---cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhhccc------ccHHH
Q 029105 68 AEDGKFREALGKWEAALNL----RPE---NAVLHEQKAQVLLELGDA-------WNALKAATRATELEQ------SWAEA 127 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~----~~~---~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p------~~~~~ 127 (199)
.....+++|++.|.-|+-. .+. -+.++..+|-+|...|+- ..|++.|.+++.... +....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3445677888877776532 112 256778889999888884 455566666664432 23567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
.+.+|.+..+.|++++|..+|.+++.....+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 8899999999999999999999999875443
No 286
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.12 E-value=0.055 Score=40.84 Aligned_cols=148 Identities=18% Similarity=0.046 Sum_probs=91.7
Q ss_pred chhhhhccchhhhhhccccc-chhhHH-HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF-DAKQLA-LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN 109 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 109 (199)
+..-+-.|++++|.+.|+.. .+|+.- --+..+-..-.+.|..+.|..+-+.+....|.-+.++...-...+..|+|+.
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 34455678888888888776 455422 1122222333567888889999999999999888888888888888999999
Q ss_pred HHHHHHHHhhc---ccccH---HHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 110 ALKAATRATEL---EQSWA---EAWITLGRAQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 110 A~~~~~~al~~---~p~~~---~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
|++..+..... .++.. .+-..-+.... -.-+...|...-.+++++.|+...+-..-+..+.+.|+..++.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence 98887655432 22211 11111111111 1234556666666666777766666666666666666655543
No 287
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.12 E-value=0.033 Score=44.52 Aligned_cols=56 Identities=20% Similarity=0.042 Sum_probs=31.0
Q ss_pred hcchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN 85 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 85 (199)
..|..|...|+.+.|...|.++ ...+-+.+|..-|..-....+++.|+.+.+.+..
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 3455566666666666666655 1122345555555555555566666665555543
No 288
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.12 E-value=0.02 Score=42.63 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=76.6
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105 78 GKWEAALNLRPENAVLHEQKAQVLLELGD------------AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 145 (199)
..+++.+..+|.+..+|..+....-..-. .+.-+.++++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999988876554432 456678999999999999999988888888888999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 146 ESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
+-+++++..+|++...|...-...
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999998877655443
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.12 E-value=0.048 Score=39.76 Aligned_cols=120 Identities=16% Similarity=0.035 Sum_probs=83.6
Q ss_pred hccchhhhhhccccc------chhh----HHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccC----CCc----------H
Q 029105 37 ELEKNDDNNEHQEPF------DAKQ----LALSFEAQGNNLAEDG-KFREALGKWEAALNLR----PEN----------A 91 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~------~~~~----~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~----~~~----------~ 91 (199)
..|+++.|...+.++ ..|. -...+++.|......+ +++.|..++++++++- +.. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 456777777766666 2332 3567888999999999 9999999999988772 111 2
Q ss_pred HHHHHHHHHHHHcCCHHH---HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105 92 VLHEQKAQVLLELGDAWN---ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~---A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 156 (199)
.++..++.++...+.++. |....+.+-...|+.+..+...-.+....++.+++.+.+.+++..-+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 567778888888877654 44444445455677777765555555557888888888888887644
No 290
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0045 Score=47.65 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD-AWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
.+.++..|.....-..+.+.+.+-...|.+++..+|+++++|..-|.-.+..+. .+.|...+.++++.+|+++..|..
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 344677777777766777779999999999999999999999999999888877 999999999999999999987753
No 291
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.07 E-value=0.0018 Score=46.95 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=70.1
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 80 WEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT-LGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 80 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
|.++-...|+++..|...+....+.|-|.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334445578888888888888888888999999999999999999998876 4455677889999999999999999999
Q ss_pred HHHHHHH
Q 029105 159 EEARDDR 165 (199)
Q Consensus 159 ~~~~~~l 165 (199)
|..|...
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 8877554
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.05 E-value=0.012 Score=41.02 Aligned_cols=96 Identities=15% Similarity=-0.007 Sum_probs=65.9
Q ss_pred ccchhhhhhccccc---------chhhHHHHHHHHhhHHHhcccHHH-------HHHHHHHHHccCCC------cHHHHH
Q 029105 38 LEKNDDNNEHQEPF---------DAKQLALSFEAQGNNLAEDGKFRE-------ALGKWEAALNLRPE------NAVLHE 95 (199)
Q Consensus 38 ~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-------A~~~~~~~l~~~~~------~~~~~~ 95 (199)
...+++|++.|.-+ .....+..+..+|.+|...|+.+. |+..|.+++..... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34556677665544 223457788899999999988554 55556665544322 257888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccH-HHHHHHHH
Q 029105 96 QKAQVLLELGDAWNALKAATRATELEQSWA-EAWITLGR 133 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 133 (199)
.+|.+..+.|++++|+.+|.+++.....+. .....+|.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 999999999999999999999997643322 34444443
No 293
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.02 E-value=0.013 Score=37.24 Aligned_cols=79 Identities=16% Similarity=-0.014 Sum_probs=62.5
Q ss_pred HHHHHHHHhhHHHhcc---cHHHHHHHHHHHHc-cCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105 56 LALSFEAQGNNLAEDG---KFREALGKWEAALN-LRPEN-AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~-~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
.....++++.++.... +..+.+.+++..+. -+|.. -.+.+.++..+++.++|+.++.+.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456677777776654 56678899999986 44543 4788999999999999999999999999999999887655
Q ss_pred HHHH
Q 029105 131 LGRA 134 (199)
Q Consensus 131 lg~~ 134 (199)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
No 294
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=97.00 E-value=0.014 Score=49.98 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=119.2
Q ss_pred hhcchhhhhccchhhhhh------ccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCcH
Q 029105 29 QEHGLSGAELEKNDDNNE------HQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPENA 91 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~ 91 (199)
.+.|......|.+.++.+ .+... ..|..+..+..++.++...|+.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 455666677777777766 33322 67888999999999999999999999988776543 34556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------ 157 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------ 157 (199)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|+.....
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78899999999999999999999888865 4555566788999999999999999999999986422
Q ss_pred --cHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 158 --SEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 158 --~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
....+..++.....++++..|....
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 2445667777777777777665443
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.00 E-value=0.015 Score=46.54 Aligned_cols=125 Identities=14% Similarity=-0.028 Sum_probs=91.6
Q ss_pred cchhhhhhcccccch-------hhHHHHHHHHhhHHHhcc-----cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-
Q 029105 39 EKNDDNNEHQEPFDA-------KQLALSFEAQGNNLAEDG-----KFREALGKWEAALNLRPENAVLHEQKAQVLLELG- 105 (199)
Q Consensus 39 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~- 105 (199)
.+.+.|+..+..+.. ...+.+.+.+|.+|.+.. +...|+..|.++.... ++.+.+.+|.++..-.
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK 340 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence 456667776665522 223446778899988753 6788999999998774 5677788999988655
Q ss_pred --CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 106 --DAWNALKAATRATELEQSWAEAWITLGRAQLNF----GEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 106 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
++..|.++|..|... .+..+.+.+|.||..- -+...|..++.++.+.. ++.+...++..+
T Consensus 341 ~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred cccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 578999999998764 6788999999998753 46789999999999987 344444444333
No 296
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.016 Score=41.13 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=73.7
Q ss_pred hhhhhccccc--chhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 029105 42 DDNNEHQEPF--DAKQLALSFEAQGNNLAED-GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW-NALKAATRA 117 (199)
Q Consensus 42 ~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~a 117 (199)
..|+.....+ .+|.+-.+|...-.++... .+..+-++++...+.-+|.+.++|...-.+....|++. .-++....+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 3344443333 5666666666555555443 35666777888888888888888888877777788777 777888888
Q ss_pred hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
+..+..+..+|...-.+...-+.++.-+.+..+.++.
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888877777776666655555554444444444433
No 297
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.95 E-value=0.024 Score=42.87 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=95.4
Q ss_pred hhcchhhhhccchhhhhhccccc-------------------------------chhhHHHHHHHHhhHHHhcccHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-------------------------------DAKQLALSFEAQGNNLAEDGKFREAL 77 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 77 (199)
.+++.++...|+...|.+..+++ .+...-.+++.....+.+.|-+..|.
T Consensus 44 lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAl 123 (360)
T PF04910_consen 44 LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTAL 123 (360)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45678888888888777655444 12223346677788889999999999
Q ss_pred HHHHHHHccCCC-cH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-----cHHHHHHHHHHHHhcCCh---------
Q 029105 78 GKWEAALNLRPE-NA-VLHEQKAQVLLELGDAWNALKAATRATELEQS-----WAEAWITLGRAQLNFGEP--------- 141 (199)
Q Consensus 78 ~~~~~~l~~~~~-~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~--------- 141 (199)
++.+-.+.++|. |+ .+...+-....+.++|+--+..++........ -|..-+..+.++...++-
T Consensus 124 E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~ 203 (360)
T PF04910_consen 124 EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQS 203 (360)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccccc
Confidence 999999999998 66 44555556666888998888888776552111 234667788888888888
Q ss_pred ------HHHHHHHHHHHhcCCC
Q 029105 142 ------DKAIESFERALAIKPD 157 (199)
Q Consensus 142 ------~~A~~~~~~al~~~p~ 157 (199)
+.|...+.+|+...|.
T Consensus 204 ~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 204 GRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccccchhHHHHHHHHHHHHhHH
Confidence 8899999999887664
No 298
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0028 Score=46.64 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=96.7
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRP-------------------ENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
....+...+..++++.|..-+.+++..-. .-.....+++.+-...+.+..|+.....+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34456667777888888777777654311 11245667889999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 121 EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 121 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
++....+++..+..+....++++|++.++.+....|++......+..+-....++.+-..
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~ 364 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQK 364 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888777777766666555333
No 299
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.92 E-value=0.013 Score=44.35 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcC
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVG 193 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 193 (199)
-..+..||..+++.+-|+...-+.+.++|.++.-+...+.|...+.+|.+|.+++.-+.-..|..|
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346889999999999999999999999999999999999999999999999998877777777765
No 300
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.016 Score=41.39 Aligned_cols=72 Identities=21% Similarity=0.064 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 344555667788899999999999999999999988999999999999999999999999999998876544
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.85 E-value=0.0037 Score=30.89 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
++.++|.++..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4455555555555555555555555544
No 302
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.84 E-value=0.07 Score=39.06 Aligned_cols=126 Identities=17% Similarity=0.054 Sum_probs=90.5
Q ss_pred hhcchhhhh----ccchhhhhhcccccchhhHHH---HHHHHhhHHHhcc-------cHHHHHHHHHHHHccCCCcHHHH
Q 029105 29 QEHGLSGAE----LEKNDDNNEHQEPFDAKQLAL---SFEAQGNNLAEDG-------KFREALGKWEAALNLRPENAVLH 94 (199)
Q Consensus 29 ~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~A~~~~~~~l~~~~~~~~~~ 94 (199)
+.+|..+.. ..++.+|...|.++-...++. +.+.+|.++..-. +...|...|.++.... ++.+.
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~ 190 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ 190 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence 345555554 347889999998883333333 3777777776642 3347888998887765 67888
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhcC
Q 029105 95 EQKAQVLLE----LGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG---------------EPDKAIESFERALAIK 155 (199)
Q Consensus 95 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~---------------~~~~A~~~~~~al~~~ 155 (199)
..+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...| +...|..++..+....
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 899988865 4578999999999998866 78888899 666655 6667777777776665
Q ss_pred CCcH
Q 029105 156 PDSE 159 (199)
Q Consensus 156 p~~~ 159 (199)
+...
T Consensus 268 ~~~~ 271 (292)
T COG0790 268 FDNA 271 (292)
T ss_pred ChhH
Confidence 5433
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.83 E-value=0.0034 Score=31.03 Aligned_cols=30 Identities=37% Similarity=0.371 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
..++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356889999999999999999999999876
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.015 Score=41.54 Aligned_cols=76 Identities=18% Similarity=0.099 Sum_probs=66.2
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
.....+=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+..|++.++..++..|+.+.+-...+.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3444555677889999999999999999999999999999999999999999999999999999998876554443
No 305
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.11 Score=37.16 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=98.6
Q ss_pred hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH-
Q 029105 65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL-GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD- 142 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~- 142 (199)
.++.+...-..|+..-..++.++|.+..+|...-.++..+ .+..+-+.++..+++-+|.+.++|...-.+....|++.
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 3445556677899999999999999998888877777654 45678889999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
.-+...+.++..+..+-.+|...--+....+.++.-..
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 88899999999999999999988888888888776444
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.78 E-value=0.13 Score=39.72 Aligned_cols=123 Identities=21% Similarity=0.034 Sum_probs=66.8
Q ss_pred HHHHHHHHhhHHHhccc-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHhhc---------cc-
Q 029105 56 LALSFEAQGNNLAEDGK-FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK--AATRATEL---------EQ- 122 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~p- 122 (199)
-+.-+...|.-+...|. -++|+..++.++...|.+..+....- .+-...|.+|+. .+.+.+.+ .|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 34555566777777777 77888888888888877754322111 111122233321 11111111 11
Q ss_pred --ccHHHHHHH--HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 123 --SWAEAWITL--GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 123 --~~~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
.+.+.-..+ |..++..|+|.++.-+-.-..++.| .+.++..+|.|....++|.+|-..
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 122222223 2344566777776666666666666 566677777777777777666543
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.055 Score=44.76 Aligned_cols=117 Identities=15% Similarity=-0.038 Sum_probs=83.8
Q ss_pred hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----------ccc----------cc
Q 029105 65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE----------LEQ----------SW 124 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----------~~p----------~~ 124 (199)
..|...|.|++|.+..+.--+++- -..|++.+.-+...++.+.|+++|+++-. -+| .+
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 345556677777665544322221 35678889999999999999999987532 233 24
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------------------CCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAI---------------------KPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+..|.-.|......|+.+.|+..|..+-.. ...+..+-+.|++-|...|+..+|...+-
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 556778899999999999999998877543 23455677889999999999988876553
No 308
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.70 E-value=0.038 Score=34.40 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=63.1
Q ss_pred chhhhhccchhhhhhccccc--------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc-------cCCCc
Q 029105 32 GLSGAELEKNDDNNEHQEPF--------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN-------LRPEN 90 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------~~~~~ 90 (199)
|...+..|-|++|...++++ -..-++-.+..++..+...|+|++++....+++. ++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 44455567777777776665 1223566777899999999999998877777764 45554
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 91 A----VLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 91 ~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
. .+.+..|..+-..|+.++|+..|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3 34567888999999999999999988765
No 309
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.69 E-value=0.0032 Score=45.69 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=69.4
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ-KAQVLLELGDAWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
..++++..|...+.--...|-+.+-...|.+++..+|.+++.|.. -+--+...++++.+...+.++++++|++|..|+.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 456788888888888888889999999999999999999999877 4455678899999999999999999999988764
Q ss_pred H
Q 029105 131 L 131 (199)
Q Consensus 131 l 131 (199)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
No 310
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=96.65 E-value=0.012 Score=42.59 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 76 ALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 76 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
|..+|.+|+.+.|++...++.+|.+....|+.-.|+-+|-+++-...-.+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666665433345556666655555
No 311
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.63 E-value=0.024 Score=47.90 Aligned_cols=100 Identities=18% Similarity=0.097 Sum_probs=80.9
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLEL----G---DAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
....++...+.|++|+..|++.....|+.. .+.+..|.....+ | .+++|+..|++.. -.|.-|--+...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 345667778899999999999999998764 6778888887753 2 4778888887654 346667778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
|.+|..+|++++-++++.-+++..|.+|..-
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 9999999999999999999999999987643
No 312
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.57 E-value=0.22 Score=39.62 Aligned_cols=128 Identities=13% Similarity=-0.027 Sum_probs=108.2
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAEAWIT 130 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 130 (199)
..+.+...|.....--...|+++...-.|++++--......+|...+......|+.+-|-..+.++.++ .|..+..+..
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 444556677777777788999999999999999888888899999999999999999999888888876 4677888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 131 LGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
-+..-...|++..|...++......|+...+-..-.....+.|..+.+.
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 8888899999999999999999888998887777777777777777655
No 313
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.049 Score=42.16 Aligned_cols=144 Identities=12% Similarity=0.051 Sum_probs=101.0
Q ss_pred hhhcchhhhhccchhhhhhccccc---chhhH--HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------HH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF---DAKQL--ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----------AV 92 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------~~ 92 (199)
.+-+|..-...+.++.|...|..+ ....+ +-...++|..|.+.|+-+.--+..+ .+.|.+ ..
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHH
Confidence 356688888888999999999887 23333 3345578999999887554433333 345543 36
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCcHHHH-
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIK---PDSEEAR- 162 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~- 162 (199)
+++..|...+.++++.+|...+.+.+++... ....+..+|.+....|+..++.....-++.+. |+.+.-+
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 7788899999999999999999999987521 23456788999999999999999888887764 4443322
Q ss_pred --HHHHHHHHHHhh
Q 029105 163 --DDRQTALHLVKR 174 (199)
Q Consensus 163 --~~l~~~~~~~~~ 174 (199)
.-+-.++...|+
T Consensus 527 s~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 527 SSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHhCc
Confidence 223345555555
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.56 E-value=0.084 Score=35.72 Aligned_cols=96 Identities=21% Similarity=0.104 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCcHH----H
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNFGEPDKAIESFERALAIK--PDSEE----A 161 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~ 161 (199)
..++..+|..|.+.|+.+.|++.|.++...... ..+.++.+..+....+++......+.++-..- +.+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 377889999999999999999999998876433 34567888888899999999999988887653 23332 3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccccc
Q 029105 162 RDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 162 ~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
...-|..+...++|.+|...++...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3445566777889999988777654
No 315
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.011 Score=45.99 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF---GEPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
...-|.-.+..+.+..|+..|.+++...|.....+.+.+.+++.. |+.-.|+.....+++++|....+++.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 333444445567788999999999999999999999999988875 56677888899999999999999999999999
Q ss_pred HHhhhhhhhhhccc
Q 029105 171 LVKRRKHLHLSGLS 184 (199)
Q Consensus 171 ~~~~~~~a~~~~~~ 184 (199)
.++++.+|....++
T Consensus 457 el~r~~eal~~~~a 470 (758)
T KOG1310|consen 457 ELTRYLEALSCHWA 470 (758)
T ss_pred HHhhHHHhhhhHHH
Confidence 99999998875543
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.48 E-value=0.15 Score=37.22 Aligned_cols=114 Identities=17% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHhcccHHHHHHHHHHHHccC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcc----c---c-------
Q 029105 67 LAEDGKFREALGKWEAALNLR----PEN----AVLHEQKAQVLLELG-DAWNALKAATRATELE----Q---S------- 123 (199)
Q Consensus 67 ~~~~~~~~~A~~~~~~~l~~~----~~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~----p---~------- 123 (199)
...+|+++.|..++.++-... |+. ...+++.|......+ +++.|..+++++..+- + .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999876543 333 367788999999999 9999999999999872 1 1
Q ss_pred cHHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 124 WAEAWITLGRAQLNFGEPD---KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
....+..++.+|...+.++ +|....+.+-...|+.+..+..--.+....++.+++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~ 142 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE 142 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH
Confidence 1235678888898888764 45556666666678877766444444444444444433
No 317
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.15 Score=38.77 Aligned_cols=147 Identities=16% Similarity=0.046 Sum_probs=98.8
Q ss_pred cchhhh-hccchhhhhhccccc-----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC------CCcHH
Q 029105 31 HGLSGA-ELEKNDDNNEHQEPF-----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR------PENAV 92 (199)
Q Consensus 31 ~g~~~~-~~~~~~~A~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------~~~~~ 92 (199)
++..++ ...++.+|...-... .+--.+..++.+..++...|+...-...+...+... ...+.
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qav 210 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAV 210 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHH
Confidence 344443 356777777654443 223345677788888888888766666665554331 12246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH------HH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATEL----EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE------AR 162 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~ 162 (199)
+.+.+-.+|...+.|++|-....++.-- +.......+.+|.+..-+++|..|.++|-+|+...|.+.. ..
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~ 290 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN 290 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence 6777888999999999998888777622 1234566788999999999999999999999999997532 22
Q ss_pred HHHHHHHHHHhhhhh
Q 029105 163 DDRQTALHLVKRRKH 177 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~ 177 (199)
..+..+-..+|.+.+
T Consensus 291 k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 291 KLMIVVELLLGEIPE 305 (493)
T ss_pred HHHHHHHHHcCCCcc
Confidence 223334445566554
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.45 E-value=0.031 Score=33.47 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=33.8
Q ss_pred HHcCCHHHHHHHHHHHhhccc---------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 102 LELGDAWNALKAATRATELEQ---------SWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 102 ~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
.+.|+|.+|++.+.+...... ....+..++|.++...|++++|+..+++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356666666666655554421 123355667777777777777777777777664
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.39 E-value=0.037 Score=40.05 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666666666666666666666655544
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.11 Score=41.19 Aligned_cols=111 Identities=20% Similarity=0.080 Sum_probs=85.1
Q ss_pred ccHHHHHHHHHHHHccCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 71 GKFREALGKWEAALNLRPENAVLHEQ--KAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
+...-++..+...+.++|.++.++.. +...+...+....+......++..+|.+..+..++|......|..-.+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444777777788888888876443 4777777888889999999999999999999999999998888877777666
Q ss_pred HH-HHhcCCCcHHHHHHH------HHHHHHHhhhhhhhhh
Q 029105 149 ER-ALAIKPDSEEARDDR------QTALHLVKRRKHLHLS 181 (199)
Q Consensus 149 ~~-al~~~p~~~~~~~~l------~~~~~~~~~~~~a~~~ 181 (199)
.+ +....|.+.+....+ +.....+++..++...
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELA 164 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHH
Confidence 65 888999998887777 5555555555554443
No 321
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.28 E-value=0.18 Score=38.25 Aligned_cols=124 Identities=21% Similarity=0.127 Sum_probs=88.8
Q ss_pred hcchhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHc
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLEL 104 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~ 104 (199)
..|.+-...|+-..|.+...+. .....+-++..-+..-...|+++.|.+-|+..+. +|..- --+..|-.-....
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 3466666667766666655444 2334456667778888889999999999998776 44321 1122222333468
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
|..+.|..+.+++-..-|.-+-++...-......|+++.|++..+.....
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999999999999988877777777788899999999998766543
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.05 Score=43.53 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
-+-|.-+++..+|..+++.|...+.--|. .......++.||..+.+.+.|.+++++|-+.+|.++-.......+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34577788999999999999999987664 345678899999999999999999999999999998887777777
Q ss_pred HHHHhhhhhhhhhc
Q 029105 169 LHLVKRRKHLHLSG 182 (199)
Q Consensus 169 ~~~~~~~~~a~~~~ 182 (199)
...-+..++|....
T Consensus 438 ~~~E~~Se~AL~~~ 451 (872)
T KOG4814|consen 438 FLAEDKSEEALTCL 451 (872)
T ss_pred HHHhcchHHHHHHH
Confidence 77788888877644
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.25 E-value=0.089 Score=30.13 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHH---HHHHHHHHHcCCHHHHHHHHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLH---EQKAQVLLELGDAWNALKAAT 115 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~ 115 (199)
..|.-++...+.++|+..++++++..++.+..+ ..+..++...|+|.+++.+.-
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544443222 223344445555555554443
No 324
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.19 Score=42.72 Aligned_cols=142 Identities=8% Similarity=-0.021 Sum_probs=92.7
Q ss_pred cchhhhhccchhhhhhccccc------------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 31 HGLSGAELEKNDDNNEHQEPF------------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
.|.+....+-|++|...|.+. ..-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 355666666777777776654 11234678999999999999999999988665
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---c------------------------HHHHHHHHHHHHhcC
Q 029105 87 RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS---W------------------------AEAWITLGRAQLNFG 139 (199)
Q Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~------------------------~~~~~~lg~~~~~~~ 139 (199)
+++..+...-....+.|.|++-+.++.-+-+.... + ..-....|.-++..|
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence 55666777777788889998888887665543211 0 111123444445555
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
.|+.|.-.|. +..-|..|+..+..+|+|..|......+
T Consensus 1209 ~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1209 MYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5555554443 2345677788888888888777655433
No 325
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.11 E-value=0.033 Score=33.37 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=44.7
Q ss_pred HHhcccHHHHHHHHHHHHccCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105 67 LAEDGKFREALGKWEAALNLRPE---------NAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122 (199)
Q Consensus 67 ~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 122 (199)
..+.|++..|++.+.+.+..... ...+..++|.++...|++++|+..+++++.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45778999998888877655321 235678899999999999999999999998854
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.09 E-value=0.029 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCChHHHHHH
Q 029105 127 AWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~ 147 (199)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555555555555
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.02 E-value=0.06 Score=38.99 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=56.0
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
...++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45567778888888899999999999999999999999999999999999999999998887664
No 328
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.01 E-value=0.099 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH---HHHHhcCChHHHHHH
Q 029105 96 QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG---RAQLNFGEPDKAIES 147 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~~~~~~A~~~ 147 (199)
..|.-++..++.++|+..++++++..++.+.-+..+| .+|...|+|.+.+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544444333332 344555555555443
No 329
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=96.01 E-value=0.056 Score=39.20 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
|..+|.+|+.+.|+++..+..+|.++...|+.-.|+-+|-+++......+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666665544445556666655555
No 330
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.2 Score=39.73 Aligned_cols=100 Identities=20% Similarity=0.017 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc---------------------CCCcHH---HHHHHHHHHHHcCCH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL---------------------RPENAV---LHEQKAQVLLELGDA 107 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------------------~~~~~~---~~~~la~~~~~~~~~ 107 (199)
..|.+...+..++.+...+|+.+.|....++++-. .|.|-. +.+..-..+.+.|.+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 67889999999999999999999999888887621 223322 233344556689999
Q ss_pred HHHHHHHHHHhhcccc-cHHHHHHHHHHH-HhcCChHHHHHHHHHH
Q 029105 108 WNALKAATRATELEQS-WAEAWITLGRAQ-LNFGEPDKAIESFERA 151 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~-~~~~~~~~A~~~~~~a 151 (199)
..|.+++.-.+.++|. +|-+...+-.+| ....+|+--++.++..
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998 776555544444 4567777777777665
No 331
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.90 E-value=0.039 Score=26.51 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 029105 94 HEQKAQVLLELGDAWNALKA 113 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~ 113 (199)
++.+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44455555555555555555
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.90 E-value=0.013 Score=25.88 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 029105 128 WITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~ 148 (199)
.+.+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554443
No 333
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.84 E-value=0.36 Score=37.34 Aligned_cols=93 Identities=13% Similarity=-0.029 Sum_probs=45.6
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
.+...|.++..++++.+|...|.+......+.+ .++.++-.-.+-+++.+.-.......-+..|..+......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344555556666666666666665554433332 222222222223444444444444444445555555555555
Q ss_pred HHHhcCChHHHHHHHHHH
Q 029105 134 AQLNFGEPDKAIESFERA 151 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~a 151 (199)
...+.+.+.+|++.+...
T Consensus 88 ~~Y~~k~~~kal~~ls~w 105 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVW 105 (549)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 556666666655555433
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.78 E-value=0.032 Score=43.26 Aligned_cols=106 Identities=14% Similarity=0.095 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.|..|......+.+....|.|+++...+.-+-..-..-..+...+-......|++++|.....-.+.-.-.+++....-+
T Consensus 319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa 398 (831)
T PRK15180 319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA 398 (831)
T ss_pred CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence 34444445555666666666666665554433322222233334444455566666666666555544444455444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
.....+|-+++|.-.+++.+.++|..
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhccCChh
Confidence 44556677788888888888877653
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.77 E-value=0.024 Score=27.62 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
+..||.+-...++|++|+..|++++.+
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444444455555555555444443
No 336
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.75 E-value=0.019 Score=27.94 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
.++..+|.+-...++|++|+..|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998763
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.18 Score=33.83 Aligned_cols=108 Identities=11% Similarity=0.040 Sum_probs=80.3
Q ss_pred hhcchhhhhccchhhhhhccccc----chhhH--HHHHHHHhhHHHhcccHHHHHHHHHHH-HccCCCcHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF----DAKQL--ALSFEAQGNNLAEDGKFREALGKWEAA-LNLRPENAVLHEQKAQVL 101 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~ 101 (199)
+..|.+..+.|+-..|+..|..+ ..|.. -.+...-+.++...|.|++-....+.. -..+|-...+.-.||..-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 45678888899999999999887 23332 234555677888899999887766653 234555567888899999
Q ss_pred HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 102 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
++.|++..|.+.|..+.. +...|....+.+.+.+.
T Consensus 178 ~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 999999999999998876 55556666666666543
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.70 E-value=0.022 Score=25.09 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAAT 115 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~ 115 (199)
+...+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555556666666666555543
No 339
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.35 Score=36.79 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcccccHHHHHHHHHHHHhc----CChHHHH
Q 029105 72 KFREALGKWEAALNLRPENAVLHEQKAQVLLELGD--AWNALKAATRATELEQSWAEAWITLGRAQLNF----GEPDKAI 145 (199)
Q Consensus 72 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----~~~~~A~ 145 (199)
-+++-+.+...++..+|+...+|+.+..++.+.+. +..=++.++++++.+|.+..+|...=.+.... ....+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 46677788889999999999999999999987765 57889999999999999988887665554433 2356777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 146 ESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
++..+++.-++.|-.+|.+...++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHH
Confidence 88899999999999999888877763
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.58 E-value=0.11 Score=40.35 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=82.6
Q ss_pred HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105 68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
...|+.-.|-.....++...|.+|......+.++.+.|.|+.+.+.+..+-.+-.....+..-+-.-...+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888999999999999999999999999999999999999988776655444444555566667888999999988
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105 148 FERALAIKPDSEEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 148 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 178 (199)
-+-.+.-.-++++...--+.....+|-++++
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 8877766555555544444444444444443
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.44 E-value=1 Score=37.83 Aligned_cols=118 Identities=20% Similarity=0.051 Sum_probs=86.9
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--N-------AVLHEQKAQVLLELGDAWNALKAATRATELEQSW--- 124 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 124 (199)
|......+.......++.+|...+.++...-+. + ....-..|.+....|+++.|+...+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 444556677777888999998888887654332 1 3555667888889999999999999999887753
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCcHHH--HHHHHHHHHHHhh
Q 029105 125 --AEAWITLGRAQLNFGEPDKAIESFERALAIK----PDSEEA--RDDRQTALHLVKR 174 (199)
Q Consensus 125 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~--~~~l~~~~~~~~~ 174 (199)
..+...+|.+..-.|++++|..+..++.+.. ...-.+ ....+.++...|+
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 3467788999999999999999998888773 223333 3445667777774
No 342
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.24 E-value=0.17 Score=43.75 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=99.7
Q ss_pred hhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPEN 90 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~ 90 (199)
..++..+...|++++|+..-.++ ..|+....+..++...+..++...|+..+.++..+ .|.-
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence 34567778889999999887766 67888889999999999999999999998887654 4444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQ--------SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.....+++.++...++++.|+.+.+.|+..+. .....+..++..+..++++..|+...+....+
T Consensus 1057 a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1057 ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 56778899999899999999999999998642 24456677788888888888877776665544
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.14 E-value=0.21 Score=42.53 Aligned_cols=127 Identities=16% Similarity=-0.013 Sum_probs=89.2
Q ss_pred chhhhhccchhhhhhccccc--chh---hHHHHHHHHhhHHHhc-------ccHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAK---QLALSFEAQGNNLAED-------GKFREALGKWEAALNLRPENAVLHEQKAQ 99 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~---~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 99 (199)
..++.....|+.|+..|++. .-| +--++.+..|..+..+ ..+.+|+..|++.- -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 45677778899999999988 333 2345677777766543 25778888887753 35666777889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCcH
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF-----GEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~ 159 (199)
+|..+|+|++-++++.-|++..|.+|..-...-.+-.++ .+-..|....--++...|...
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999998876543333222222 233456666667777777653
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.10 E-value=0.16 Score=36.85 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=31.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 98 AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+.+.|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44455566666666666666666666666666666666666665555555543
No 345
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.76 E-value=0.3 Score=35.02 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
..+...+|.-|+..|+|+.|+..++.+...... ...+...+..|+...|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355567888888888888888888888654321 23456677788888888887776655543
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.70 E-value=0.88 Score=31.35 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhc-ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHhhhhhhhh
Q 029105 107 AWNALKAATRATEL-EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD----SEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 107 ~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
-++|...|-++-.. .=+++...+.+|..|. ..+.++++..+.+++++.+. +++.+..|+.++...|+++.|--
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 35666666544322 1257888888888776 67888999999999988643 48899999999999999988643
No 347
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.64 E-value=0.31 Score=38.53 Aligned_cols=99 Identities=13% Similarity=0.011 Sum_probs=76.5
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHH-
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWIT- 130 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~- 130 (199)
.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++...= +.+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence 6899999999998888777 999999999999999999999999999999999999999999999886432 2555543
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 029105 131 LGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al 152 (199)
+..+....|+...+....-++.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy 114 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAY 114 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHH
Confidence 3444555565555444433333
No 348
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.63 E-value=0.59 Score=38.67 Aligned_cols=51 Identities=18% Similarity=0.093 Sum_probs=27.6
Q ss_pred chhhhhccchhhhhhccccc------------chhhHH-HHHHHHhhHHHhcccHHHHHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF------------DAKQLA-LSFEAQGNNLAEDGKFREALGKWEA 82 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 82 (199)
|..+.+..++++|++.|.+. ..|... ..--.-|.-+...|+++.|+..|-.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 55666666777777777665 112111 1111234555666777777666544
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=0.97 Score=41.96 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=90.8
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-cc--------
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-QS-------- 123 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 123 (199)
....++.|...|.+.+..|.++.|-...-.+.+.. -+.++...|..+...|+-..|+..+++.+..+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 44568899999999999999999999888887776 57888999999999999999999999999653 22
Q ss_pred --------cHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 124 --------WAEAWITLGRAQLNFGEP--DKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 124 --------~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
...+....+......|++ ..-+..|..+.++.|.....++.+|.-|.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 112345555666666665 45678899999999987777777774433
No 350
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.49 E-value=0.99 Score=35.88 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 81 EAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
++-++.+|.+...|..|-.-+..+ .+++....|++.+...|..+.+|...........+|+.-...|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 556777888888888777766544 7888888888888888888888888888888888888888888877754
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.45 E-value=0.11 Score=39.84 Aligned_cols=61 Identities=23% Similarity=0.187 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh-------c-ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATE-------L-EQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~-------~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
....+.+++...|+|..|++.++..-- . -+-+...++.+|.+|+.+++|.+|+..|..++.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888999999888754321 1 123455688889999999999999988887763
No 352
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=94.23 E-value=0.4 Score=31.08 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
.....+...+..|++..|......++..+|++..+....+.++..+|...+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 344455555566666666666666666666666666666666666655443
No 353
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.23 E-value=0.77 Score=37.74 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------hhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRA----------------------TELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~a----------------------l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
.++.++|..+..+..|++|.++|.+. ...-|++.+.+-.+|..+...|.-++|.++|.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 56666666666666666666665432 22246677777788888888888888888775
Q ss_pred H
Q 029105 150 R 150 (199)
Q Consensus 150 ~ 150 (199)
+
T Consensus 877 r 877 (1189)
T KOG2041|consen 877 R 877 (1189)
T ss_pred h
Confidence 4
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.08 E-value=1.3 Score=34.80 Aligned_cols=75 Identities=11% Similarity=-0.123 Sum_probs=50.5
Q ss_pred cchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNA 110 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 110 (199)
...-+.+.|-.+.|+.... ++...+.+ ..+.|+.+.|.+.. ...+++..|..||.....+|+++-|
T Consensus 301 i~~fL~~~G~~e~AL~~~~------D~~~rFeL---Al~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFVT------DPDHRFEL---ALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHTT-HHHHHHHSS-------HHHHHHH---HHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHCCCHHHHHhhcC------ChHHHhHH---HHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHH
Confidence 3455566777788877753 34444444 45778888887543 2334678899999999999999999
Q ss_pred HHHHHHHhh
Q 029105 111 LKAATRATE 119 (199)
Q Consensus 111 ~~~~~~al~ 119 (199)
..+|+++-.
T Consensus 367 e~c~~k~~d 375 (443)
T PF04053_consen 367 EECYQKAKD 375 (443)
T ss_dssp HHHHHHCT-
T ss_pred HHHHHhhcC
Confidence 999988743
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.06 E-value=2.1 Score=33.64 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=49.3
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 140 (199)
..++.-+...|-.+.|+... .++...+.|+ .+.|+.+.|.+..++ .+++..|..||.....+|+
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCC
Confidence 34445555566666555321 2344445544 467777777665432 2467799999999999999
Q ss_pred hHHHHHHHHHHH
Q 029105 141 PDKAIESFERAL 152 (199)
Q Consensus 141 ~~~A~~~~~~al 152 (199)
++-|..+|+++-
T Consensus 363 ~~lAe~c~~k~~ 374 (443)
T PF04053_consen 363 IELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhhc
Confidence 999999998764
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.99 E-value=0.8 Score=32.08 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=55.5
Q ss_pred hhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105 64 GNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126 (199)
Q Consensus 64 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 126 (199)
...+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 445678889999999999999999999998888889999999999999999999999997543
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.98 E-value=3.4 Score=34.96 Aligned_cols=112 Identities=15% Similarity=0.036 Sum_probs=82.4
Q ss_pred cchhhhhccchhhhhhccccc----ch-------hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-----HHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF----DA-------KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-----AVLH 94 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~ 94 (199)
.+.......++.+|.....++ .. ...+......|.+....|+++.|.+..+.++..-|.+ ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 355666677888877766555 11 1234455567888899999999999999999887766 3677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccc----ccHH--HHHHHHHHHHhcCChH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQ----SWAE--AWITLGRAQLNFGEPD 142 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~--~~~~lg~~~~~~~~~~ 142 (199)
..+|.+..-.|++++|..+...+.++.. .... +....+.++..+|+..
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 8899999999999999999998887733 2222 3445677888889443
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.78 E-value=0.19 Score=25.33 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
+.+|.+|..+|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777774
No 359
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.74 E-value=0.54 Score=38.69 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=82.0
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLLE--LGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
...-|+.+++.+++.++.--|..++.+-|.+ .....+.+.|+.. .|+|..++..+.-++...|....++...+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 3445677788888888877777777777733 3455666666654 577888888888888888888888888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
+|...+.++-|++...-....+|.+..+..-...++...
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 888888888888887777778888865544444444333
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.72 E-value=0.52 Score=34.39 Aligned_cols=61 Identities=26% Similarity=0.241 Sum_probs=52.8
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRAT 118 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 118 (199)
..+...+..+...|.+.+|++..++++.++|-+...+..+-.++...|+--.++..|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445567788899999999999999999999999999999999999999888877776654
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.70 E-value=0.25 Score=22.37 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
|+.+.+...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999999999887654
No 362
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.66 E-value=2.3 Score=31.92 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=77.0
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-----------------
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ----------------- 122 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------------- 122 (199)
-+.+-....+..+..+-++....+++++|..+.++..++.- +..-..+|...++++++.-.
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 34444555666777777888889999999999988888753 33445666666666665311
Q ss_pred ------ccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHhhhhh
Q 029105 123 ------SWAE--AWITLGRAQLNFGEPDKAIESFERALAIKPDSE--EARDDRQTALHLVKRRKH 177 (199)
Q Consensus 123 ------~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~ 177 (199)
.+.. ....++.|..++|+..+|++.++...+..|-.. ..+-+|..++..+.-|.+
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 234688999999999999999999888777432 234455555555544443
No 363
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=2.4 Score=32.51 Aligned_cols=112 Identities=17% Similarity=0.113 Sum_probs=82.8
Q ss_pred hhHHHhcccHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhhcccccHHHHHH
Q 029105 64 GNNLAEDGKFR-EALGKWEAALNLRPENAVLHEQKAQVLLE------------LGDAWNALKAATRATELEQSWAEAWIT 130 (199)
Q Consensus 64 ~~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~ 130 (199)
-......|.++ ++++.=.+.+..+|+...+|+..-.++.. +.-.++-+.+...++..+|+...+|+.
T Consensus 35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 33344455554 56677777888899888777655443332 224566778889999999999999999
Q ss_pred HHHHHHhcCC--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105 131 LGRAQLNFGE--PDKAIESFERALAIKPDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 131 lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 175 (199)
+..++.+.+. +..-++..+++++.+|.+..+|...-.+.......
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 9999987765 57888999999999999988887776666554443
No 364
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=3.1 Score=33.48 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHHHHcc------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------------------
Q 029105 71 GKFREALGKWEAALNL------------RPENAVLHEQKAQVLLELGDAWNALKAATRATEL------------------ 120 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------ 120 (199)
..|++|...|.-++.. .|.+...+..++.+...+|+.+-|....++++-.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4466666666655443 5667788999999999999988777766666532
Q ss_pred ---ccccHHH---HHHHHHHHHhcCChHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHH
Q 029105 121 ---EQSWAEA---WITLGRAQLNFGEPDKAIESFERALAIKPD-SEEARDDRQTALHLV 172 (199)
Q Consensus 121 ---~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 172 (199)
.|.|-.. .+..-.-+.+.|.+..|.++++-.+.++|. +|-+...+..+|...
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 1222222 223333455789999999999999999998 877766666665543
No 365
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.23 E-value=2.2 Score=30.56 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHhhh
Q 029105 108 WNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEARDDRQTALHLVKRR 175 (199)
Q Consensus 108 ~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~ 175 (199)
...++.+.+|+.... --...-..+|.-|+..|++++|+..|+.+...... ...+...+..|+..+|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 344555555554422 12335568899999999999999999999655332 245678888899999988
Q ss_pred hhhhhhccc
Q 029105 176 KHLHLSGLS 184 (199)
Q Consensus 176 ~~a~~~~~~ 184 (199)
+......++
T Consensus 235 ~~~l~~~le 243 (247)
T PF11817_consen 235 EDYLTTSLE 243 (247)
T ss_pred HHHHHHHHH
Confidence 886665443
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.20 E-value=1.9 Score=29.73 Aligned_cols=72 Identities=21% Similarity=0.114 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----cHHHHHHHHHHHHhcCChHHHH
Q 029105 73 FREALGKWEAALNLR-PENAVLHEQKAQVLLELGDAWNALKAATRATELEQS----WAEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~ 145 (199)
-++|...|-++-... -+++...+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++..+|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 355666665543321 145788888887776 78999999999999998543 6889999999999999999884
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.04 E-value=4.4 Score=33.36 Aligned_cols=106 Identities=17% Similarity=0.031 Sum_probs=76.5
Q ss_pred hHHHHHHHHhhHHH-hcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc----
Q 029105 55 QLALSFEAQGNNLA-EDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQS---- 123 (199)
Q Consensus 55 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---- 123 (199)
..+.+.+.+|.+++ ...+++.|..++++++.+...+ ..+...++.++.+.+... |+..+++.++...+
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46788899999998 7899999999999998776432 234566788888877777 99999999987544
Q ss_pred cHHHHHHH--HHHHHhcCChHHHHHHHHHHHhcC--CCcHHH
Q 029105 124 WAEAWITL--GRAQLNFGEPDKAIESFERALAIK--PDSEEA 161 (199)
Q Consensus 124 ~~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~ 161 (199)
.+...+.+ .......+++..|++.++...... +.++.+
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 22222222 223333479999999999888775 355543
No 368
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.08 Score=39.30 Aligned_cols=109 Identities=10% Similarity=-0.084 Sum_probs=83.1
Q ss_pred hcchhhhhccchhhhhhccccc-------------chhh--------HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF-------------DAKQ--------LALSFEAQGNNLAEDGKFREALGKWEAALNLRP 88 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~-------------~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 88 (199)
+.|...++.++++.|...+.+. ..++ -......++.+-+..+.+..|+..-..+++.++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 4577788888888887766555 0111 112344567777888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
....+++..+..+....++++|++.+..+....|++......+..+-...
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 88899999999999999999999999999999999887665555444433
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.59 E-value=0.34 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 95 EQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
+.+|..|..+|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 370
>PF12854 PPR_1: PPR repeat
Probab=92.51 E-value=0.56 Score=22.02 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATR 116 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (199)
...|..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555555555555555555543
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.41 E-value=0.88 Score=31.89 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=44.3
Q ss_pred hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105 34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 91 (199)
.+.+.+...+++...+.. ..|.+......+-.++.-.|+|++|...++-+-.+.|.+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566777777766554 6677777777788888889999999999988888888763
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.40 E-value=1.4 Score=36.27 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHc----------------------cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALN----------------------LRPENAVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----------------------~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (199)
..-.++..+|..+.....|++|.++|...-. .-|++..++-.+|..+...|.-++|.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 3456788899999999999999988876421 134444445555555555555555555
Q ss_pred HH
Q 029105 113 AA 114 (199)
Q Consensus 113 ~~ 114 (199)
.+
T Consensus 874 a~ 875 (1189)
T KOG2041|consen 874 AY 875 (1189)
T ss_pred HH
Confidence 54
No 373
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.33 E-value=1.9 Score=33.32 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=47.9
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHcc---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNL---------RPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
++..+.+++...|+|..|++.++.. ++ .+-+...++..|-+|+.+++|..|+..|..++..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999987653 22 2233577899999999999999999999888753
No 374
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.33 E-value=1.8 Score=32.39 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 72 KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 72 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
+|..-...|.......|+ +.+-.|.+....+..-...++...+..... -..+...+...|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 444444555555555554 444556666666666677777777666554 23455577788999999999999999999
Q ss_pred HHHhcCCCcHHHHHHH
Q 029105 150 RALAIKPDSEEARDDR 165 (199)
Q Consensus 150 ~al~~~p~~~~~~~~l 165 (199)
+++.+.++..+..+..
T Consensus 390 rAi~La~~~aer~~l~ 405 (415)
T COG4941 390 RAIALARNAAERAFLR 405 (415)
T ss_pred HHHHhcCChHHHHHHH
Confidence 9999998877654433
No 375
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=4.3 Score=31.32 Aligned_cols=69 Identities=13% Similarity=-0.083 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL--RP--ENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
..+...+.+-+.|...+.|++|.....+..-- .. ..+...+.+|.+..-+++|..|.+++-++++..|.
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34445555556666666666666555554311 11 12344555666666666666666666666666664
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.14 E-value=0.8 Score=29.73 Aligned_cols=51 Identities=22% Similarity=0.029 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP 141 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 141 (199)
.......+.-.+..|++.-|.+....++..+|++..+...++.++..+|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344566677777788888888888888888888888888888877766543
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.94 E-value=4 Score=33.56 Aligned_cols=116 Identities=16% Similarity=0.045 Sum_probs=75.4
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccC-------C---Cc----------------HHHHHHHHHHHHHcCCHHHHHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLR-------P---EN----------------AVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------~---~~----------------~~~~~~la~~~~~~~~~~~A~~ 112 (199)
++..-|......+..+.|.+++.++++.- + .. ..+....+.+.+-.+++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 33444556666666667777777665431 1 11 1344566777788999999998
Q ss_pred HHHHHhhcc---c------ccHHHHHHHHHHHHhcCChHHHHHHHH--------HHHhcCCCcH---HHHHHHHHHHHHH
Q 029105 113 AATRATELE---Q------SWAEAWITLGRAQLNFGEPDKAIESFE--------RALAIKPDSE---EARDDRQTALHLV 172 (199)
Q Consensus 113 ~~~~al~~~---p------~~~~~~~~lg~~~~~~~~~~~A~~~~~--------~al~~~p~~~---~~~~~l~~~~~~~ 172 (199)
....+.... | -.+..++..|..+...|+.+.|+..|. .+....+.+. -+..++..++...
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 888777553 2 246789999999999999999999998 3334444332 2345555565544
Q ss_pred hh
Q 029105 173 KR 174 (199)
Q Consensus 173 ~~ 174 (199)
+.
T Consensus 463 ~~ 464 (608)
T PF10345_consen 463 SS 464 (608)
T ss_pred cc
Confidence 43
No 378
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.75 E-value=0.74 Score=37.48 Aligned_cols=109 Identities=11% Similarity=-0.036 Sum_probs=58.3
Q ss_pred chhhhhccchhhhhhccccc------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQ 99 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 99 (199)
+..+...|+.++|+...... .+...-+.+...+..+.....+.-|.+.|.+.=. ...+-.
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq 781 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ 781 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence 35566667777776654322 1112223333334444444444444444444211 123344
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
.+...++|++|....++.-+.-|+ +++-.|..+.+..++++|.+.|-++
T Consensus 782 lHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred heeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 556778888887777665554443 5566666666666666666666554
No 379
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.71 E-value=0.7 Score=33.51 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=98.4
Q ss_pred ccchhhhhhccccc--chhh----HHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-------CC----------------
Q 029105 38 LEKNDDNNEHQEPF--DAKQ----LALSFEAQGNNLAEDGKFREALGKWEAALNL-------RP---------------- 88 (199)
Q Consensus 38 ~~~~~~A~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~~---------------- 88 (199)
..+.++|+..|.++ ..+. -..++..+..+.++++++++-.+.|.+.+.. +-
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34677888888877 2222 2356778888899999998888888776532 10
Q ss_pred -------------------CcHHHH----HHHHHHHHHcCCHHHHHHHHHHHhhcccc------------cHHHHHHHHH
Q 029105 89 -------------------ENAVLH----EQKAQVLLELGDAWNALKAATRATELEQS------------WAEAWITLGR 133 (199)
Q Consensus 89 -------------------~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~ 133 (199)
.+...| .-+|.+++..++|..-..++.+.-..... -.+.+..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 000111 23577777777777666666554433211 1123334445
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC--cHHHHHH----HHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105 134 AQLNFGEPDKAIESFERALAIKPD--SEEARDD----RQTALHLVKRRKHLHLSGLSNDANRFVVGDKT 196 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (199)
.|..+.+...-...|++++.+... +|..... =|..+.+-|++++|...++.++...-..|.+.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 667777777777788888877543 2333222 23456778899999999998887766666543
No 380
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.44 E-value=2.6 Score=32.42 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=69.9
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc----c----ccH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELE----Q----SWA 125 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~~ 125 (199)
-.++..+|.-|...|+++.|+++|.++-...... ...+.++-.+-..+|+|..-..+..++...- . -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4577889999999999999999999865554332 3566777777788899888887777776541 0 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
.....-|.+...+++|..|..+|-.+.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355666777788889999988886554
No 381
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=9.7 Score=33.33 Aligned_cols=160 Identities=12% Similarity=0.087 Sum_probs=95.8
Q ss_pred hcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC---------------------
Q 029105 30 EHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--------------------- 88 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--------------------- 88 (199)
..|.-.+..+.|+.|.-.|. +..-+..++..+...|+|..|+...+++-....
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCG 1272 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYS------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICG 1272 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcC
Confidence 34666666666666655553 344456677777788888888877776633210
Q ss_pred C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-C-C------
Q 029105 89 E----NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI-K-P------ 156 (199)
Q Consensus 89 ~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p------ 156 (199)
- +++-+-.+-..|...|-+++-+..++.++-+...+-..+..+|..|.+- ++++-++.++--... + |
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~ 1351 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAA 1351 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHH
Confidence 0 1122334556667778888888888888877777777777777776543 333333332211110 0 1
Q ss_pred CcHHHHHHHHHHHHHHhhhhhhhhhcccccchhhhcCCCC
Q 029105 157 DSEEARDDRQTALHLVKRRKHLHLSGLSNDANRFVVGDKT 196 (199)
Q Consensus 157 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 196 (199)
+....|..+.-.|..-..|+.|....+..-...|..|.+.
T Consensus 1352 eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FK 1391 (1666)
T KOG0985|consen 1352 EQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFK 1391 (1666)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHH
Confidence 2245677777788887888887776666655556655543
No 382
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.63 E-value=3.1 Score=34.77 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=39.3
Q ss_pred chhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (199)
|.-+...|.++.|+.+|..+. .+..-........+|.+|+..++..-.... ....|-.++.-|...|+|+.|.
T Consensus 713 g~hl~~~~q~daainhfiea~------~~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN------CLIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHH
Confidence 555666677777777665541 111111222334555666555554332221 1233445555556666666666
Q ss_pred HHHHHH
Q 029105 112 KAATRA 117 (199)
Q Consensus 112 ~~~~~a 117 (199)
+.|.++
T Consensus 786 ~lf~e~ 791 (1636)
T KOG3616|consen 786 ELFTEA 791 (1636)
T ss_pred HHHHhc
Confidence 655444
No 383
>PF12854 PPR_1: PPR repeat
Probab=90.41 E-value=0.95 Score=21.20 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
+...|..+-..+.+.|+.++|++.|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3567888899999999999999998763
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.34 E-value=6.1 Score=30.42 Aligned_cols=62 Identities=13% Similarity=-0.038 Sum_probs=45.5
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH--HHHHHHH--HHHHHcCCHHHHHHHHHHHhhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENA--VLHEQKA--QVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la--~~~~~~~~~~~A~~~~~~al~~ 120 (199)
.....+..++..++|..|...+......-|... ..+..++ -.+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677788999999999999999887533333 3444444 4445688899999999988765
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=90.23 E-value=3.3 Score=26.30 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=21.9
Q ss_pred HHHHHHHHHHc--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 75 EALGKWEAALN--LRPENAVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 75 ~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
.+.+.|..+.. +.-..+..|...|..+...|++.+|.++|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44444444332 33444555555566666666666666655554
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.09 E-value=3.4 Score=31.04 Aligned_cols=89 Identities=16% Similarity=0.065 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--------------C-
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP--------------D- 157 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------------~- 157 (199)
.-+.+.....+..+..+-++....+++++|....++..++.- +.--..+|...++++++... .
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 334555666777888888999999999999999999888752 23345567777777665421 0
Q ss_pred --------c--HHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 158 --------S--EEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 158 --------~--~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+ .-+...|+.|..++|+..+|.+...
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1 1245789999999999999887554
No 387
>PF13041 PPR_2: PPR repeat family
Probab=89.70 E-value=1.7 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 388
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.55 E-value=9.9 Score=30.79 Aligned_cols=114 Identities=13% Similarity=-0.017 Sum_probs=56.6
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHhhcc--cc-cHHHHHHHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK---AATRATELE--QS-WAEAWITLG 132 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~al~~~--p~-~~~~~~~lg 132 (199)
+...-+..--..|++..|...+++..+..|+...+-........+.|+.+.+.. .+.....-. +. ....+...+
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHH
Confidence 333444444445555555555555555555555555555555555555555542 111111110 00 111222233
Q ss_pred H-HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 133 R-AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 133 ~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
. .+.-.++.+.|...+.+++...|.+...+..+..+....
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 2 233456677777777777777777776666655554433
No 389
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=89.05 E-value=4.4 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.155 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
.+..-+|+..++.++..+|.+..+...+..+|...|-.+.|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345567888999999999999999999999999999999999988553
No 390
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.96 E-value=5.2 Score=32.56 Aligned_cols=49 Identities=37% Similarity=0.390 Sum_probs=35.3
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
..+.|+++.|.+...++ ++..-|-.||.+....+++..|.++|.++...
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 35677777776655443 45566788888888888888888888877655
No 391
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=88.79 E-value=7.6 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105 142 DKAIESFERALAIKPDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 175 (199)
+.|...+.+++.++|....+...+-.+-...|..
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 4555666666666666655555555544444443
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.66 E-value=2.6 Score=28.90 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
.+..++..++.++..|+ +..+..++.++..+|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34445666777777774 778888999999999999999999999999993
No 393
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=8.5 Score=28.88 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH--
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP------ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA-- 125 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 125 (199)
....+++..+|.-|.+.|+-+.|.+.+.+..+..- +-.-....+|..|....-..+.++.....++...++-
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 34566777788888888888888877766544321 1123445566666655555555555555555433321
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 126 -EAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 126 -~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.....-|...+...++.+|-..|..++..
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 12334455566667777777777766654
No 394
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=88.24 E-value=2.3 Score=30.07 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=60.0
Q ss_pred HhcccHHHHHHHHHHHHccCCCcH------------HHHHHHHHHHHHcCCHH-HH-HHHHHHHhhc--cccc--HHHHH
Q 029105 68 AEDGKFREALGKWEAALNLRPENA------------VLHEQKAQVLLELGDAW-NA-LKAATRATEL--EQSW--AEAWI 129 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~~~~~------------~~~~~la~~~~~~~~~~-~A-~~~~~~al~~--~p~~--~~~~~ 129 (199)
+..|+|+.|++...-+|+.+-.-| +-....+......|..- .. ...+..+..- -|+. ...+-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 567999999999999998743222 22233444455556521 11 1222222211 1333 33455
Q ss_pred HHHHHHH---------hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 130 TLGRAQL---------NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 130 ~lg~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
..|..+. ..++...|+.++++++.++|... +...+..+...+
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~l 224 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERRL 224 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHH
Confidence 6676663 45677899999999999998743 233344444333
No 395
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.19 E-value=6.5 Score=26.96 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=81.4
Q ss_pred ccchhhhhhccccc-chhhHHHHHHHHhhHHHh-----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-----cCC
Q 029105 38 LEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAE-----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLE-----LGD 106 (199)
Q Consensus 38 ~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~~~ 106 (199)
..++++|...|... .....+...+.+|.-++. .++...|++.+..+-. .+.+.+..++|.++.. .++
T Consensus 48 ~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d 125 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD 125 (248)
T ss_pred HHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence 45677777777766 445566777777766653 4678889999988766 4567777888877763 223
Q ss_pred --HHHHHHHHHHHhhcccccHHHHHHHHHHHHhc------------------------CChHHHHHHHHHHHhcCCCcHH
Q 029105 107 --AWNALKAATRATELEQSWAEAWITLGRAQLNF------------------------GEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 107 --~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------------~~~~~A~~~~~~al~~~p~~~~ 160 (199)
...|..++.++..+. +..+-++|...|+.- .+.+.|.+.--++.+++ ++.
T Consensus 126 pd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~ 201 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQ 201 (248)
T ss_pred CCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChH
Confidence 678889998887764 444555666555543 34455555555555543 344
Q ss_pred HHHHHHHHHH
Q 029105 161 ARDDRQTALH 170 (199)
Q Consensus 161 ~~~~l~~~~~ 170 (199)
+-.++++.|.
T Consensus 202 aCAN~SrMyk 211 (248)
T KOG4014|consen 202 ACANVSRMYK 211 (248)
T ss_pred HHhhHHHHHH
Confidence 5555555553
No 396
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=87.65 E-value=1.3 Score=19.56 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=10.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 029105 130 TLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 130 ~lg~~~~~~~~~~~A~~~~~~a 151 (199)
.+-.+|.+.|++++|.+.|++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHH
Confidence 3444444555555555555444
No 397
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.15 E-value=6.1 Score=25.53 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=35.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.+..+|+-++--+.+.........+|..+..+|.+|.+.|+..+|-+.+.+|.+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445666666666666666544556788888888888888888888888877654
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.99 E-value=3.9 Score=27.99 Aligned_cols=49 Identities=27% Similarity=0.218 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105 73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 122 (199)
.+..++..++.+...|+ +..+..++.++...|+.++|.....++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44555667777777785 78889999999999999999999999999999
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.75 E-value=17 Score=30.28 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=67.5
Q ss_pred chhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 32 GLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
|.......+.+.|...+... .......+...+|.-....+...+|...+..+..... +....-.........+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 44444455556666665543 2222333444444444444324566666665443322 2233333334444677
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
+++.....+...-..........|-+|.++...|+.++|...|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 887776666664433334556677778887778888888888887644
No 400
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.74 E-value=3.4 Score=34.37 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=80.8
Q ss_pred hhcchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHh--cccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAE--DGKFREALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
..-|+.+++.+++.++...|... .++.........+.+++. .++|..++.-..-++...|....++...+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 34588889999999886655544 445566666777777765 5789999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccHHHHH
Q 029105 101 LLELGDAWNALKAATRATELEQSWAEAWI 129 (199)
Q Consensus 101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 129 (199)
|...++++-|++...-....+|.++.+.-
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 99999999999998888888998855433
No 401
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=11 Score=30.26 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=68.3
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
...+.+.......|+++......+..+...|+.+.|+..++..+...-. ..-.++.+|.++..+.++..|-..+....
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455556678998988889999999999988888888888872111 23346778888889999999999998887
Q ss_pred hcCCCcHHHHHHHH-HHH
Q 029105 153 AIKPDSEEARDDRQ-TAL 169 (199)
Q Consensus 153 ~~~p~~~~~~~~l~-~~~ 169 (199)
....=....+..++ .|+
T Consensus 331 desdWS~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 331 DESDWSHAFYTYFAGCCL 348 (546)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 77654444454444 444
No 402
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.13 E-value=4.6 Score=23.06 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=10.6
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHH
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAA 83 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~ 83 (199)
+...|.-+-..|++.+|+.+|+.+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333444444444444444444443
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.00 E-value=3.9 Score=31.47 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=43.6
Q ss_pred CchHhhhcchhhhhccchhhhhhcccccch--hhHH--HHHH--HHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 24 FDQQDQEHGLSGAELEKNDDNNEHQEPFDA--KQLA--LSFE--AQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~~~--~~~~--~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
++......+..++..++|..|...+..... |... ..+. ..|..+...-++.+|.+.++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334445667788899999999998887711 2222 2333 3455567788999999999987765
No 404
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=11 Score=27.97 Aligned_cols=101 Identities=7% Similarity=-0.061 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH--
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE------NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA-- 125 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 125 (199)
....+++.++|.-|.+.++.+.+.++..+.++-.-. -.-+...+|.+|..+.-.++.++.....++...+..
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 345678888888888888888888777666543211 123345566666666666777777766666543321
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 126 -EAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 126 -~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
......|...+...++.+|-..+...+..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 12234455566667777777777666543
No 405
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.86 E-value=18 Score=29.61 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
...+.+....+.-+.............+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 22 KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444444444444333344444455555555666666666666666666665 345555666666666665555554
No 406
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=84.60 E-value=9.7 Score=27.92 Aligned_cols=68 Identities=24% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-----C-----------------HHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 75 EALGKWEAALNLRPENAVLHEQKAQVLLELG-----D-----------------AWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-----~-----------------~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.-...++.-++..|++..++..+|..+.... . .+.|...+.+++.++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3566777888899999988888888776431 1 66788889999999999998888887
Q ss_pred HHHHhcCChH
Q 029105 133 RAQLNFGEPD 142 (199)
Q Consensus 133 ~~~~~~~~~~ 142 (199)
.+-...|...
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 7777777664
No 407
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=12 Score=31.84 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=40.5
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
.++.+..-|+-|+...... ........+...|.-++..|++++|...|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4556666677777766555 33345677888999999999999999999888765
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.78 E-value=16 Score=34.81 Aligned_cols=115 Identities=9% Similarity=-0.075 Sum_probs=50.8
Q ss_pred cchhhhhccchhhhhhccccc---chh-h-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 31 HGLSGAELEKNDDNNEHQEPF---DAK-Q-LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
++.+-++.+.|..|+-+++.- ..+ . ....+..+-.+|...++++.-.-.... ...+|+ ....-......|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEASG 1463 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHhhc
Confidence 455666677777777766652 111 1 112222223345555554443333322 011111 112222233445
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
++..|..+|++++..+|+....+...-......|.++..+-..+-
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 555555555555555555444444444444444555544444433
No 409
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=83.35 E-value=3.1 Score=18.76 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444556666666666666665543
No 410
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.01 E-value=9.6 Score=24.19 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHH----Hhhc
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQVLLELGDAWNALKAATR----ATEL 120 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~----al~~ 120 (199)
+..+|...++.+++-.++-.|++|+.+..+- .....++|..+..+|+.+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4456777788888888888888877552211 23456788888888888888888754 4445
Q ss_pred ccccH
Q 029105 121 EQSWA 125 (199)
Q Consensus 121 ~p~~~ 125 (199)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 55543
No 411
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=82.87 E-value=8.7 Score=23.60 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 96 QKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
..|...+..|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34444445555555555555554443333333333334333333
No 412
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=82.74 E-value=22 Score=28.20 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=81.7
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
++|.+...|+.+..-+..+|.+++-.+.|++...-.|--+.+|...-..-...+++..-...|.+++...-+ .+.|...
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHH
Confidence 689999999999999999999999999999999999988888877666666678888888888887765332 4455433
Q ss_pred HHHHHhcC-----C----hHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 132 GRAQLNFG-----E----PDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 132 g~~~~~~~-----~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
-..-.+.+ + .-+|-+..-.+.-.+|.....|...+..+.
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle 163 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE 163 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 22212211 1 223444444444456777666666655443
No 413
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=81.90 E-value=4.6 Score=30.85 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
...-+|+..++.++..+|.+......+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999988863
No 414
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.84 E-value=11 Score=29.68 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=63.6
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 79 KWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
.++.-++-+|++...|+.|-.-+..++.+++-.+.+++...-.|-.+.+|...-.--...+++..-...|.+++...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 45566788999999999999999999999999999999999999888888766555556678887778888877653
No 415
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.82 E-value=18 Score=29.18 Aligned_cols=82 Identities=9% Similarity=-0.064 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 88 PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
|-+..++..+-.++...-++.-....|.+++... .+-.+++.++.||.+. ..++=...+++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344444444444444444444455555555543 2344555666666655 3444455566666665555555555555
Q ss_pred HHHH
Q 029105 168 ALHL 171 (199)
Q Consensus 168 ~~~~ 171 (199)
.|..
T Consensus 141 ~yEk 144 (711)
T COG1747 141 KYEK 144 (711)
T ss_pred HHHH
Confidence 5544
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.16 E-value=18 Score=26.22 Aligned_cols=90 Identities=11% Similarity=0.002 Sum_probs=38.8
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHhhcc------cccHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELGDAW-NALKAATRATELE------QSWAE 126 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~------p~~~~ 126 (199)
.++.-+..+.+.|++..|.+...-.++. .+.+......+..+....+.-+ +-....++++.-. -.++.
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~ 91 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HH
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHH
Confidence 3444445555555555554443332222 2222333345555554443322 1222333333221 24566
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 029105 127 AWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
.+..+|..+.+.|++.+|..+|
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHH
Confidence 7777777777777777666554
No 417
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=80.36 E-value=4.6 Score=18.78 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhccc
Q 029105 107 AWNALKAATRATELEQ 122 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p 122 (199)
++.|..+|++.+..+|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444444444444443
No 418
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.24 E-value=22 Score=26.44 Aligned_cols=152 Identities=9% Similarity=-0.045 Sum_probs=81.5
Q ss_pred hcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHH---HHHccCCC--cHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWE---AALNLRPE--NAVLH 94 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~~l~~~~~--~~~~~ 94 (199)
++++......++++|+..|... ...+.......++.+|...|++..-.+... .+...... ...+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 4556667778888888887766 112345577788888888887765433332 22222111 11111
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCcHHH
Q 029105 95 EQK-AQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAI----K--PDSEEA 161 (199)
Q Consensus 95 ~~l-a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~ 161 (199)
..+ -..-.....++.-+..+...++-.... ...-..+..++...|.|.+|+....-.+.. + |.-...
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 111 111112333444455555554432211 112345667788888888888777655532 1 333455
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 029105 162 RDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 162 ~~~l~~~~~~~~~~~~a~~~ 181 (199)
+..-..+|.......++..+
T Consensus 168 hllESKvyh~irnv~KskaS 187 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKAS 187 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhH
Confidence 55566667766666655443
No 419
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=8.3 Score=28.25 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=73.3
Q ss_pred chhhHHHHHHHHhhHHHhc--ccHHHHHHHHHHHHccCCCcHHHHHHHHHHH------HHcCCHHHHHHHHHHHhhcccc
Q 029105 52 DAKQLALSFEAQGNNLAED--GKFREALGKWEAALNLRPENAVLHEQKAQVL------LELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~p~ 123 (199)
..|.+-++|...-.++-.- .++..-....++.++.++.|..+|...-.+. .....+..-.++-..+|..++.
T Consensus 103 ~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~ 182 (328)
T COG5536 103 DNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIY 182 (328)
T ss_pred cCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCC
Confidence 4455555555554444333 5566667777888888888776665443333 3444455556777778888888
Q ss_pred cHHHHHHH---HHHHHhcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 124 WAEAWITL---GRAQLNFGE------PDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 124 ~~~~~~~l---g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+--+
T Consensus 183 N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 183 NNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred ChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 88888776 333333444 4555667777777888887776655443
No 420
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.72 E-value=9.2 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHH
Q 029105 144 AIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
|++.+.+++...|+++.......
T Consensus 32 aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 32 AIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHhCCChHHHHHHHH
Confidence 33344444445566555433333
No 421
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=79.38 E-value=7.6 Score=24.53 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
.+|..+...|++++|..+|-+|+...|.-..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 4677777777777777777777777766443
No 422
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.99 E-value=15 Score=23.84 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=37.5
Q ss_pred HHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 67 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
+..+|+-++-.+.+.........++.++.-+|..|.+.|+..++-+.+.+|.+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445666666666667666556667899999999999999999999999888764
No 423
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=78.98 E-value=5 Score=18.41 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhc----CChHHHHHHHHHHHh
Q 029105 127 AWITLGRAQLNF----GEPDKAIESFERALA 153 (199)
Q Consensus 127 ~~~~lg~~~~~~----~~~~~A~~~~~~al~ 153 (199)
+.+.+|.+|..- .+..+|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445555555431 255566666665544
No 424
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=78.95 E-value=8.6 Score=24.27 Aligned_cols=31 Identities=26% Similarity=0.085 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSWA 125 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 125 (199)
..+|..+...|++++|..+|-+|+...|...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 4566666777777777777777777766543
No 425
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.84 E-value=29 Score=27.15 Aligned_cols=112 Identities=13% Similarity=-0.025 Sum_probs=61.6
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHcCC--------------HHHHHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQKAQVLLELGD--------------AWNALKAATRA 117 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~--------------~~~A~~~~~~a 117 (199)
.....+|+..+..++|+.|...|+.+..-..++ +.+.-..|.+.+..+. ++.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345678888899999999998888876643322 2333445555555553 23333334332
Q ss_pred ----hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--C--CC---cHHHHHHHHHHH
Q 029105 118 ----TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI--K--PD---SEEARDDRQTAL 169 (199)
Q Consensus 118 ----l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~--p~---~~~~~~~l~~~~ 169 (199)
.........+....+.++...|.+.+|...+-+.... + -. .+-.+-+++.|+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh
Confidence 1111122344556666777778776666555444433 2 22 233455555555
No 426
>PF13041 PPR_2: PPR repeat family
Probab=78.53 E-value=7 Score=19.83 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 427
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.44 E-value=7 Score=21.64 Aligned_cols=17 Identities=35% Similarity=0.310 Sum_probs=8.3
Q ss_pred HcCCHHHHHHHHHHHhh
Q 029105 103 ELGDAWNALKAATRATE 119 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~ 119 (199)
..|++++|+.+|.+++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 34555555555544443
No 428
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=78.24 E-value=5.7 Score=18.66 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHh
Q 029105 141 PDKAIESFERALA 153 (199)
Q Consensus 141 ~~~A~~~~~~al~ 153 (199)
+++|+.+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4566666666654
No 429
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.19 E-value=6.1 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
...|.-.-..|++++|+.+|.+++..
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555677777777777766654
No 430
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.86 E-value=9.3 Score=28.02 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=81.5
Q ss_pred chhhHHHHHHHHhhHHHh--------cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcc
Q 029105 52 DAKQLALSFEAQGNNLAE--------DGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL--GDAWNALKAATRATELE 121 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~ 121 (199)
.+|..-.+|...-.+... .--++.-+.++..++.-+|.+.+.|...--++-.. ..+..-+...++.+..|
T Consensus 61 ~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~D 140 (328)
T COG5536 61 KNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSD 140 (328)
T ss_pred hCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccc
Confidence 456555555544444433 12245566778889999999999998888777665 66888888999999999
Q ss_pred cccHHHHHHHHHHH------HhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 122 QSWAEAWITLGRAQ------LNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 122 p~~~~~~~~lg~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
+.|...|...-.+. ..-..+..-.++-..++..++.+..+|.+.-
T Consensus 141 srNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 141 SRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred ccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 99888876544444 3334445556666778888999999988773
No 431
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.33 E-value=37 Score=29.43 Aligned_cols=125 Identities=18% Similarity=0.103 Sum_probs=70.6
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC--------c--HHHHHHHHHHHH------------HcCCHHHH--H
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPE--------N--AVLHEQKAQVLL------------ELGDAWNA--L 111 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--------~--~~~~~~la~~~~------------~~~~~~~A--~ 111 (199)
...--...|.-+...|+|.+|++.|+.++-.-|- - ..-...++.-|. .....+++ +
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~El 1069 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLEL 1069 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHH
Confidence 3444556777778888899998888887754331 1 122222222221 12234444 3
Q ss_pred HHHHHHhhcccccHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 112 KAATRATELEQSWAEA-WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 112 ~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
..|-.-..+.|-+.-. +..--.++++++++..|-....+.+++.|..+.+-...-.....-.+..++.+
T Consensus 1070 AaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~ 1139 (1202)
T KOG0292|consen 1070 AAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYE 1139 (1202)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccc
Confidence 3343444555644332 33333567888999999988899999888776654443333333344444443
No 432
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=77.19 E-value=19 Score=27.29 Aligned_cols=152 Identities=14% Similarity=-0.030 Sum_probs=0.0
Q ss_pred cchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHE 95 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~ 95 (199)
+...|+..++|.+|+...... +.+.-.++...-...|+...+..+|...+..+-.....- +..-.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccc--------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 96 QKAQVLLELGDAWNALKAATRATELEQS--------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
.-|..+....+|.-|..+|-++++-... ..--|..+..+....-+--.++-.-..+++....+..+...++.
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAe 293 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAE 293 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHH
Q ss_pred HHHH--Hhhhhhhhhhc
Q 029105 168 ALHL--VKRRKHLHLSG 182 (199)
Q Consensus 168 ~~~~--~~~~~~a~~~~ 182 (199)
++.. +.++..|...+
T Consensus 294 A~~nRSLkdF~~AL~~y 310 (411)
T KOG1463|consen 294 AFGNRSLKDFEKALADY 310 (411)
T ss_pred HhcCCcHHHHHHHHHHh
No 433
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.12 E-value=27 Score=25.78 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=72.8
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------HHH---HHHHH-HHHHHcCCHHHHHHHHHHHhhcccccH
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----------AVL---HEQKA-QVLLELGDAWNALKAATRATELEQSWA 125 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------~~~---~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~ 125 (199)
+-.-+..+.-..+|..|++.++++++.-..+ .+. +.-+| .++.++++|.+.+...-+-.+.-.+-|
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3345566677788999999988887643111 122 22222 456788999998887766665533333
Q ss_pred HHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHhhhhhhhhhc
Q 029105 126 EAWITLG-RAQLNFGEPDKAIESFERALAIKPDSE-------EARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 126 ~~~~~lg-~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
.-...+. ..|.+.+++....+.-..-+ .+|+|. -+-..+-.++.-+|.+++|++..
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3334444 34566777776655555444 345542 23445555666778888887644
No 434
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=77.01 E-value=3.9 Score=31.35 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 140 (199)
...|+.++++|.. .+.|..|..+|.+++.+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 4556666666654 4567788888888877765
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=76.93 E-value=5.6 Score=17.89 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 128 WITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
|..+-.++.+.|+++.|...|++..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 436
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.64 E-value=32 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCcHHHHHHHHHHH
Q 029105 108 WNALKAATRATELE-----QSWAEAWITLGRAQLNFGEPDKAIESFERALAI------KPDSEEARDDRQTAL 169 (199)
Q Consensus 108 ~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 169 (199)
..+++.|.+++... ..+.-.|..+|-.+++.+++.+|+..+-++-.. ..++.+++..+-.+.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 44566666666542 223445677777788888888888888766543 234455555554443
No 437
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.54 E-value=44 Score=27.99 Aligned_cols=116 Identities=11% Similarity=-0.028 Sum_probs=74.9
Q ss_pred hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------------c-----c-c-
Q 029105 65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-------------Q-----S-W- 124 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------p-----~-~- 124 (199)
......++++.+...+...-..........+.+|..+...|+.++|...|+++.... | . .
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAP 399 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCC
Confidence 344477788777777766443334456777888888778888888888887764321 0 0 0
Q ss_pred -H------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 125 -A------EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 125 -~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
. ..-...+..+...|....|...+..++.. .++.-...++......|.++.+....
T Consensus 400 ~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 400 KPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred chhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0 12244566677888888888888877765 23455566777777777766655433
No 438
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.15 E-value=13 Score=27.31 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=42.1
Q ss_pred hcccHHHHHHHHHHHHccCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 69 EDGKFREALGKWEAALNLRPENA----VLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 69 ~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
...+.++|+..|++++++.+... .++..+-.+.+++++|++-+..|.+.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34588999999999999988764 45667778889999999998888877643
No 439
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.48 E-value=37 Score=26.54 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------C-CcHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIK-------P-DSEE 160 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p-~~~~ 160 (199)
.++..+|.-|...|+++.|+..|.++-.... .....+.++-.+-..+|++..-..+..++...- + -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 5778899999999999999999999655433 345567788888888898877666666655441 0 0123
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 161 ARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 161 ~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
+...-|.+...+++++.|...++..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555667777888888766654
No 440
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.70 E-value=17 Score=22.30 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=11.9
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
...|.+.+..|++..|.+...++.+.
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444444444444444444333
No 441
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=73.90 E-value=42 Score=27.62 Aligned_cols=79 Identities=19% Similarity=0.107 Sum_probs=57.6
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
.+.+....+++....+.-+.-........+..+..+-..|+.++|-.+|+..+..+|+ +++...+.-+...|-..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 3445666777777776666555566667778888888999999999999999999999 44556666666655555544
Q ss_pred h
Q 029105 180 L 180 (199)
Q Consensus 180 ~ 180 (199)
.
T Consensus 95 ~ 95 (578)
T PRK15490 95 L 95 (578)
T ss_pred H
Confidence 3
No 442
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.41 E-value=52 Score=27.30 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=46.9
Q ss_pred HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHH----------
Q 029105 68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWI---------- 129 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~---------- 129 (199)
.+.|+++.|.+...+ .++..-|..||......+++..|.+++.++-... .++...+.
T Consensus 648 l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 445566665543332 2445667788888888888888888887765442 12222222
Q ss_pred --HHH-HHHHhcCChHHHHHHHHHH
Q 029105 130 --TLG-RAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 130 --~lg-~~~~~~~~~~~A~~~~~~a 151 (199)
+++ .+|+..|+++++++.+...
T Consensus 723 ~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 233 3566777777777666543
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.32 E-value=11 Score=21.64 Aligned_cols=16 Identities=19% Similarity=0.015 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHHhh
Q 029105 104 LGDAWNALKAATRATE 119 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~ 119 (199)
.|+|++|+.+|..+++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (76)
T cd02681 19 EGRYSEAVFYYKEAAQ 34 (76)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4444444444444443
No 444
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=73.29 E-value=32 Score=28.07 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=39.1
Q ss_pred HHHHHHHHhhHHHhc--ccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 56 LALSFEAQGNNLAED--GKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
.|.++-.+|.+--.. ..-..++..|.+++.. +..+...|..+|-.+++.++|.+|+..+..+-..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455443221 2223456677777654 3345577889999999999999999998776543
No 445
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.15 E-value=21 Score=22.71 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcccc---------------cHHHHHHHHHHHHhcCChHHHHHHHHH----HHhc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQS---------------WAEAWITLGRAQLNFGEPDKAIESFER----ALAI 154 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~----al~~ 154 (199)
+..+|...++.+++-.++-.|++|+.+..+ ..-.-.++|..+..+|+.+-.+++++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999999876332 122346899999999999999988864 4455
Q ss_pred CCCcH-----HHHHHHHHHHHHHhhh
Q 029105 155 KPDSE-----EARDDRQTALHLVKRR 175 (199)
Q Consensus 155 ~p~~~-----~~~~~l~~~~~~~~~~ 175 (199)
-|..+ .....||.|...+=++
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F 109 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDF 109 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHH
Confidence 56543 3456677665544433
No 446
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.89 E-value=49 Score=26.85 Aligned_cols=79 Identities=16% Similarity=-0.041 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 72 KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 72 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
++.-....+.+.+.... +..++..++.||... .-++-...+++.++.+-++...-..++..|.. ++-+.+...|.++
T Consensus 81 k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 81 KNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHH
Confidence 34444455566665543 456677888888776 55666777777777777766665666665555 6666666666666
Q ss_pred Hh
Q 029105 152 LA 153 (199)
Q Consensus 152 l~ 153 (199)
+.
T Consensus 158 ~y 159 (711)
T COG1747 158 LY 159 (711)
T ss_pred HH
Confidence 53
No 447
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.87 E-value=13 Score=22.64 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
.|..+-.+|.+|...|+.+.|...|+.--.+.|+...
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 3456777788888888888888877777777776654
No 448
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=72.81 E-value=22 Score=22.80 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=23.3
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
+.+..+-..++..-+.+.|..+|..+++.+|++..++..+-..
T Consensus 77 EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 77 EALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 3344444444445555667777777777777776666555443
No 449
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.75 E-value=39 Score=25.55 Aligned_cols=91 Identities=16% Similarity=-0.022 Sum_probs=61.7
Q ss_pred hhcchhhhhccchhhhhhccccc---------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH--ccCCCcHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF---------DAKQLALSFEAQGNNLAEDGKFREALGKWEAAL--NLRPENAVLHEQK 97 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~l 97 (199)
..++.+|.+.++++.|...+... ........+..+|..|...++..+|..+..++- ..+..+......+
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~ 186 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEY 186 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHH
Confidence 45678889999999888877655 122234567789999999999999998887753 2334555544443
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHhh
Q 029105 98 ----AQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 98 ----a~~~~~~~~~~~A~~~~~~al~ 119 (199)
|+++-..++|-+|.+.|-+...
T Consensus 187 kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 187 KVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556777777776655543
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.36 E-value=35 Score=24.83 Aligned_cols=100 Identities=18% Similarity=0.027 Sum_probs=50.7
Q ss_pred hcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCCh--
Q 029105 69 EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-----EQSWAEAWITLGRAQLNFGEP-- 141 (199)
Q Consensus 69 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~-- 141 (199)
.+++|++|++.+..+ +..+.+.|++..|.+...-.++. .+.+....-+++.+....+.-
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 456777777665543 33444555555444433333322 223333445555555544322
Q ss_pred ------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 142 ------DKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 142 ------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
..|+.|- +.-...-.++..+..+|..+.+.+++.+|...+.
T Consensus 68 ~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp THHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2344443 2112223578999999999999999998876554
No 451
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=71.87 E-value=59 Score=27.31 Aligned_cols=24 Identities=8% Similarity=-0.200 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 160 EARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
..+...|.-+.+..++++|.+++.
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHH
Confidence 345566666666667777666554
No 452
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=71.43 E-value=48 Score=26.10 Aligned_cols=104 Identities=18% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--------HHHH--------HHHHHHHH-HcCC-----HHHHH----
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--------AVLH--------EQKAQVLL-ELGD-----AWNAL---- 111 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--------~~~~--------~~la~~~~-~~~~-----~~~A~---- 111 (199)
......|.-++..|+|.+|+..|+.+|..-|-. ..+. +.+|...- ..+. .+...
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE 284 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE 284 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 344557888899999999999999987652211 1111 22222211 1121 11221
Q ss_pred -HHHHHHhhcccccHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 112 -KAATRATELEQSWAEAWITLGR-AQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 112 -~~~~~al~~~p~~~~~~~~lg~-~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
..|-.-..+.|.+...-...|. ..++.++|..|-...++.|++.|....+
T Consensus 285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 1122222334444333333343 4467899999999999999999986543
No 453
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=71.25 E-value=11 Score=18.73 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=15.8
Q ss_pred HHHHhhcccccHHHHHHHHHHHHhcCChHH
Q 029105 114 ATRATELEQSWAEAWITLGRAQLNFGEPDK 143 (199)
Q Consensus 114 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 143 (199)
+..+|..+|++...+...+..+...|+...
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~r 34 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPAR 34 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHHH
Confidence 344455555555555555555555555533
No 454
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=70.96 E-value=12 Score=21.48 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHHH
Q 029105 105 GDAWNALKAATRA 117 (199)
Q Consensus 105 ~~~~~A~~~~~~a 117 (199)
|+|++|+.+|..+
T Consensus 20 g~y~eAl~~Y~~a 32 (77)
T cd02683 20 GRFQEALVCYQEG 32 (77)
T ss_pred ccHHHHHHHHHHH
Confidence 4444443333333
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=70.95 E-value=24 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 123 SWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 123 ~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
..+..+...|..+...|++.+|.+.|+
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555566666666666666666654
No 456
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.81 E-value=68 Score=27.57 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL---ELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
.++.....+..+..+++..|++++-...-.++.++.|..+..|.....-.. ..+...++...|++++. +-+++..|
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw 186 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIW 186 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHH
Confidence 444445555666666777777766666666666666666666655543332 23455566666666664 34455566
Q ss_pred HHHHHHHHhcCC-------hHHHHHHHHHHHhcC
Q 029105 129 ITLGRAQLNFGE-------PDKAIESFERALAIK 155 (199)
Q Consensus 129 ~~lg~~~~~~~~-------~~~A~~~~~~al~~~ 155 (199)
...+......++ ++.-...|.+++..-
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~ 220 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSL 220 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhh
Confidence 666665555433 455566666666653
No 457
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.79 E-value=43 Score=25.30 Aligned_cols=95 Identities=18% Similarity=0.052 Sum_probs=64.2
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--ccccHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--------AVLHEQKAQVLLELGDAWNALKAATRATEL--EQSWAE 126 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 126 (199)
......+|.+|...++|..|...+.. +.++... ...+..+|..|.+.++..+|..+..++--+ +..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 45667899999999999999876653 2333211 256788999999999999998888776533 345666
Q ss_pred HHHHHHHHHH----hcCChHHHHHHHHHHH
Q 029105 127 AWITLGRAQL----NFGEPDKAIESFERAL 152 (199)
Q Consensus 127 ~~~~lg~~~~----~~~~~~~A~~~~~~al 152 (199)
....+-.||. ..++|-+|-+.|-+..
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555544 4556656655555444
No 458
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.56 E-value=51 Score=26.09 Aligned_cols=95 Identities=21% Similarity=0.146 Sum_probs=54.7
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHcc-----------CCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHh
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNL-----------RPENAVLHEQKAQVLLELGDA----------WNALKAATRAT 118 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~-----------~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al 118 (199)
+...|.+.+....|++|+.++-.+-+. -.+.+.....+-.||+...+. ..|...|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 455677778888888888766554332 222233334445566665542 22333332221
Q ss_pred --------hcc-cccH------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 119 --------ELE-QSWA------EAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 119 --------~~~-p~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.+. |..| ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 111 2222 23556688899999999999998877643
No 459
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=70.55 E-value=8.4 Score=29.64 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhh
Q 029105 73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGD------------AWNALKAATRATE 119 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~ 119 (199)
...|+++++++.. .++|..|..+|.++...|+ |.+|..++.+|=.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4567777777654 5667788888888887766 5556666655543
No 460
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.91 E-value=62 Score=27.88 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=40.4
Q ss_pred hhHHHhcccHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 64 GNNLAEDGKFREALGKWEAALNLRPEN-AVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 64 ~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
-.++++..-|..|+...+. ...+++. ..++...|.-++..|++++|...|-+.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3455666677777765544 2333333 477888899999999999999999888754
No 461
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=68.82 E-value=24 Score=27.10 Aligned_cols=62 Identities=15% Similarity=-0.014 Sum_probs=47.4
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHcc-CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNL-RPEN--------AVLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~-~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.+-.+|++.+++..+...++..... .|+. ...++.+|.++..+.++.+|...+..++...|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3456788899999888777654432 1222 367889999999999999999999999988776
No 462
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=68.56 E-value=1.6 Score=35.16 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=0.0
Q ss_pred hhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWE 81 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 81 (199)
..+...|++..|...+... ............+.+....|+++.|+..+.
T Consensus 32 ~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 32 RALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 3444444444444444433 111122333334444444555555544443
No 463
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=67.95 E-value=40 Score=25.51 Aligned_cols=68 Identities=19% Similarity=0.049 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHH--HHHccCCCc--H-HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWE--AALNLRPEN--A-VLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~l~~~~~~--~-~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
..|+...+++..+.-.+..|+|..|..++- +++..+|+. . ..|.-+| .-.-+.+|+.|++.+.+.-+.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHH
Confidence 567788899999999999999999887643 444444433 2 2233333 233467899998888776543
No 464
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.56 E-value=66 Score=26.13 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=55.3
Q ss_pred CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhc------cc-ccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCC
Q 029105 87 RPENAV-LHEQKAQVLLELGDAWNALKAATRATEL------EQ-SWAEAWITLGRAQLNFGE-PDKAIESFERALAIKPD 157 (199)
Q Consensus 87 ~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~ 157 (199)
++++.. -+..+|.++...|+...|..++...+.. ++ -.|-++|.+|..+..+|. ..++..++.+|-....+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 444433 3566799999999999999999887733 11 146789999999999998 99999999999887644
No 465
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.04 E-value=36 Score=24.37 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=6.6
Q ss_pred cCChHHHHHHHHHHH
Q 029105 138 FGEPDKAIESFERAL 152 (199)
Q Consensus 138 ~~~~~~A~~~~~~al 152 (199)
+|+.++|+...++++
T Consensus 182 ~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 182 LNDPEKAIEIAKQAF 196 (236)
T ss_dssp SS-HHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHH
Confidence 455555554444443
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.48 E-value=31 Score=21.91 Aligned_cols=111 Identities=11% Similarity=-0.053 Sum_probs=59.0
Q ss_pred chhhhhhcccccchhhHHHHHHHH--hhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHHHHHH
Q 029105 40 KNDDNNEHQEPFDAKQLALSFEAQ--GNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~~ 112 (199)
.+++.+..+....+|-++..-+.. -..+-..+.-..-...+++++....++. .-+..+-..|.. ..+.+.+
T Consensus 7 ~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~~~~ 84 (126)
T PF08311_consen 7 EFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSDPRE 84 (126)
T ss_dssp HHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSHHHH
T ss_pred HHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccCHHH
Confidence 455566666534555444322211 1111122344444556666665543331 111222222222 2237777
Q ss_pred HHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 113 AATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 113 ~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
+|..+.. +....+..|...|..+...|++++|...|+.++
T Consensus 85 if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 85 IFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7766664 345678888888999999999999998888764
No 467
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.07 E-value=19 Score=27.50 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=15.4
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
.-+...|+-.+..++++.|...|..+..+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHH
Confidence 33445555555555555555555555443
No 468
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.84 E-value=17 Score=21.01 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHhh
Q 029105 105 GDAWNALKAATRATE 119 (199)
Q Consensus 105 ~~~~~A~~~~~~al~ 119 (199)
|+.+.|+..|+++++
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555555555443
No 469
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.07 E-value=17 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.|+.|.....+++..+ +.|+.++|+.+|++++..
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 3555666666555543 445666666666655543
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.95 E-value=49 Score=23.69 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhc-----CCCcHH---HHHHHHHHH-HHHhhhhhhhhhcccccchh
Q 029105 142 DKAIESFERALAI-----KPDSEE---ARDDRQTAL-HLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 142 ~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~ 189 (199)
+.|...|++|+.+ .|.+|- ...+.+..+ ..+|+.++|......++...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 6788888888864 566664 334455444 44788888877666665543
No 471
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.91 E-value=35 Score=21.71 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=38.2
Q ss_pred hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029105 65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (199)
..+...+.....+.+++.++..++.++..+..+..++.+. +....+..+.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445567899999999999998888888888888888764 4456666666
No 472
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.27 E-value=38 Score=27.19 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
...+|.--+..|+|.-+.+.+.+++-.+|++..+....+.++.++|-..|..
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 3566777788999999999999999999999999999999999999765543
No 473
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=62.44 E-value=14 Score=16.57 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=9.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 029105 147 SFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 147 ~~~~al~~~p~~~~~~~~l~~ 167 (199)
...+++..+|.+..+|...--
T Consensus 5 ~~~~~l~~~pknys~W~yR~~ 25 (31)
T PF01239_consen 5 FTKKALEKDPKNYSAWNYRRW 25 (31)
T ss_dssp HHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHCcccccHHHHHHH
Confidence 344444444444444444433
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=62.39 E-value=65 Score=25.01 Aligned_cols=139 Identities=13% Similarity=-0.031 Sum_probs=0.0
Q ss_pred cccCCCCCCchHhhhcchhhhhccchhhhhhccccc----chhhHHH-----HHHHHhhHHHhcccHHHHHHHHH--HHH
Q 029105 16 LQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF----DAKQLAL-----SFEAQGNNLAEDGKFREALGKWE--AAL 84 (199)
Q Consensus 16 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~--~~l 84 (199)
....|...++......+..++..++|..|...|..+ ..+.... .....|..+...-++++|.+.++ ..-
T Consensus 121 ~~~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~ 200 (380)
T TIGR02710 121 EPSDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPE 200 (380)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccch
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHhhcccccHHHHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 029105 85 NLRPENAVLHEQKAQVLLELGDAWNALKA---ATRATELEQSWAEAWITLGRAQL--NFGEPDKAIESFERALAI 154 (199)
Q Consensus 85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~---~~~al~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~ 154 (199)
.........+..+-.+..........+.. ....-...|..+-..-.+..+.. ..|+|+.|+.-+-+++++
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 201 RLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred hhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 475
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.07 E-value=38 Score=21.53 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=64.9
Q ss_pred hhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105 35 GAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 112 (199)
+...+.....+..+... .++.++..+..+..++... +..+.++.+.. .++.... -..+....+.+-++++..
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~-~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDI-EKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCH-HHHHHHHHHcCcHHHHHH
Confidence 34445666666666655 3345666777777777654 34555566553 1222222 223444456677777777
Q ss_pred HHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 113 AATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 113 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
.+.+. ..+..+. -.+....++++.|++++.+ +.+++.|..++..+.
T Consensus 91 l~~k~----~~~~~Al---~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 91 LYKKD----GNFKDAI---VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHhh----cCHHHHH---HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77554 1222221 1112233788888888775 446777777775544
No 476
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=61.77 E-value=25 Score=19.91 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHh
Q 029105 104 LGDAWNALKAATRAT 118 (199)
Q Consensus 104 ~~~~~~A~~~~~~al 118 (199)
.|++++|+..|..++
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (75)
T cd02678 19 AGNYEEALRLYQHAL 33 (75)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
No 477
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=61.74 E-value=40 Score=21.67 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
.++..-+.+.|...|++++...|++..++..+.....
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3444455577778888888888887776666554443
No 478
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.71 E-value=24 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
..-+...-..+..+|++++|.+++.+..
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444444555566666655555443
No 479
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.90 E-value=72 Score=24.28 Aligned_cols=95 Identities=21% Similarity=0.067 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH---HH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE---EA 161 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~ 161 (199)
.+++.+.|..|.+.|+-+.|++.+.+..+..- +-.-....+|..|....-..+.++-....++...+.. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 58899999999999999999999888776432 2223456778777766655666666666666554432 23
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccc
Q 029105 162 RDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 162 ~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
...-|.-.+...++.+|...++..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455556667888887766543
No 480
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=60.36 E-value=73 Score=24.21 Aligned_cols=76 Identities=21% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--Hhhcccc--cHHH-HHHHHHHHHhcCChHHHHHHHHHH
Q 029105 77 LGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATR--ATELEQS--WAEA-WITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~--al~~~p~--~~~~-~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
++.+++-....|+.....+.++...+..|+|..|-.++-. ++-.+|+ +..+ |..+| .-.-+.+++.|++.+.+.
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHHHHHH
Confidence 3344444455666677788888888888888888665433 3322222 2222 22222 223345677777766555
Q ss_pred Hh
Q 029105 152 LA 153 (199)
Q Consensus 152 l~ 153 (199)
-+
T Consensus 194 re 195 (432)
T KOG2758|consen 194 RE 195 (432)
T ss_pred HH
Confidence 43
No 481
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=60.18 E-value=2.9 Score=33.77 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH--ccCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH--hhccc-ccH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAAL--NLRPE-NAVLHEQKAQVLLELGDAWNALKAATRA--TELEQ-SWA 125 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~p-~~~ 125 (199)
..+........-+..+...|++..|...+.+.- .+.|. ........|.+....|++..|+..+... ..+.+ ...
T Consensus 19 ~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~ 98 (536)
T PF04348_consen 19 SGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQA 98 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHH
Confidence 334455666777788888899999988888765 23332 2355566788888889999998888641 11111 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
..+..++.++...|++-+|...+-
T Consensus 99 ~~~~l~A~a~~~~~~~l~Aa~~~i 122 (536)
T PF04348_consen 99 RYHQLRAQAYEQQGDPLAAARERI 122 (536)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345566777777777766665543
No 482
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.75 E-value=29 Score=22.41 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=22.9
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVL 93 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 93 (199)
.+|..++.+|+++++..++-.++.+.|...++
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 56777777777777777777777776665443
No 483
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.68 E-value=61 Score=23.03 Aligned_cols=89 Identities=27% Similarity=0.137 Sum_probs=56.5
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
.....|.-+...+++++|+..+... ...|. ....+..++...|+.+.|+.+++.+ .-....++.......+ ...
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~---~~~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP-SLIPW---FPDKILQALLRRGDPKLALRYLRAV-GPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC-CCCcc---cHHHHHHHHHHCCChhHHHHHHHhc-CCCCCCHHHHHHHHHH-HHc
Confidence 4455677777778888888877432 22222 2334566666789999998888653 3444455555444444 667
Q ss_pred CChHHHHHHHHHHHh
Q 029105 139 GEPDKAIESFERALA 153 (199)
Q Consensus 139 ~~~~~A~~~~~~al~ 153 (199)
+...+|..+-+..-.
T Consensus 154 ~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPD 168 (226)
T ss_pred CCHHHHHHHHHhCch
Confidence 888888876665443
No 484
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.43 E-value=36 Score=27.28 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=23.3
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
.++..-+..|+|.-+.+.+++++-.+|++..+....+.++-++|
T Consensus 457 ~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 457 ELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
Confidence 34444455555555555555555555555555555555554444
No 485
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.28 E-value=38 Score=21.96 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSWAEA 127 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 127 (199)
..+|..++.+|+++++..++-.||...|...+.
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 567888888888888888888888888775543
No 486
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.06 E-value=26 Score=27.61 Aligned_cols=92 Identities=15% Similarity=-0.033 Sum_probs=57.7
Q ss_pred hhcchhhhhccchhhhhhccccc------ch-------hhHHHHHHHHhhHHHhcccH----------HHHHHHHHHHHc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF------DA-------KQLALSFEAQGNNLAEDGKF----------REALGKWEAALN 85 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~ 85 (199)
...|.+.+....|++|+..+-.+ .. .+.+..-..+..||+...+. ..|.+.|.++..
T Consensus 167 hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syG 246 (568)
T KOG2561|consen 167 HEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYG 246 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhh
Confidence 34567777888888888766555 11 12333444567788877653 234444443321
Q ss_pred --------c-CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 86 --------L-RPENA------VLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 86 --------~-~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
+ .+..+ ..+..-|.+.+++|+-++|.++++.+...
T Consensus 247 enl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 247 ENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 12222 45566799999999999999999888753
No 487
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=58.98 E-value=35 Score=22.45 Aligned_cols=32 Identities=13% Similarity=-0.001 Sum_probs=23.7
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhhcccccHH
Q 029105 95 EQKAQVLLELG-DAWNALKAATRATELEQSWAE 126 (199)
Q Consensus 95 ~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 126 (199)
..+|..+...| +..+|..+|-+|+...|...+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 45677777777 788888888888887776443
No 488
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.70 E-value=81 Score=24.16 Aligned_cols=68 Identities=28% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHhcccHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 66 NLAEDGKFREALGKWEAALNL--RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
..-...-...++...+..... -.....++...|..+.+.|+.++|-..|++++.+.++..+..+.+..
T Consensus 338 Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 338 ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 333333455566555555443 22334567788999999999999999999999998887776554443
No 489
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=58.15 E-value=32 Score=22.64 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHH
Q 029105 61 EAQGNNLAEDG-KFREALGKWEAALNLRPENAVL 93 (199)
Q Consensus 61 ~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~ 93 (199)
..+|..+...| +.++|..+|-+|+...|.-..+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 35888899898 9999999999999998875544
No 490
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.00 E-value=26 Score=20.03 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHhhc
Q 029105 104 LGDAWNALKAATRATEL 120 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~ 120 (199)
.|+|++|+..|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555555555555543
No 491
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.36 E-value=61 Score=22.36 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCCcH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHH
Q 029105 73 FREALGKWEAALNLRPENA--------VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKA 144 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 144 (199)
.+.|+..++..-+-.|... -+......++.+.|.+++|.+.+++... +|++......|..+-.+.+.+..-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Q ss_pred HHHH
Q 029105 145 IESF 148 (199)
Q Consensus 145 ~~~~ 148 (199)
++.|
T Consensus 164 lqnF 167 (200)
T cd00280 164 LQNF 167 (200)
T ss_pred HHhc
No 492
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.90 E-value=1.6e+02 Score=26.89 Aligned_cols=119 Identities=19% Similarity=0.082 Sum_probs=73.2
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-----------------------------HHHHHHHHHHHHHcCCH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-----------------------------AVLHEQKAQVLLELGDA 107 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-----------------------------~~~~~~la~~~~~~~~~ 107 (199)
+-..+.+|.+|...|...+|+.+|.++..-.... ...|..--+++.+-+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 4455678889999999999999999886532111 12222233445556667
Q ss_pred HHHHHHHHHHhhcccc-cHH---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHhhhhhhh
Q 029105 108 WNALKAATRATELEQS-WAE---AWITLGRAQLNFGEPDKAIESFERALAIKPDS---EEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~-~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~ 179 (199)
+.+.+...+||+.-|+ ++. ....+=.-+..+|.+-+|.. ++-.+|+. ...+..+..++.+.|+.+...
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~----ai~~npdserrrdcLRqlvivLfecg~l~~L~ 1074 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYK----AILRNPDSERRRDCLRQLVIVLFECGELEALA 1074 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHH----HHHcCCcHHHHHHHHHHHHHHHHhccchHHHh
Confidence 7777877888876443 322 22333334456677776654 34455663 345677777777777766543
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.60 E-value=34 Score=20.87 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 126 (199)
+.++-.||.+|...|+-+.|..-|+.--.+.|.+..
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 466677777777777777777777766666666543
No 494
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.06 E-value=47 Score=28.35 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=70.2
Q ss_pred ccchhhhhhccccc---chhhHHHHHHHHhhHHH---------hcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 38 LEKNDDNNEHQEPF---DAKQLALSFEAQGNNLA---------EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 38 ~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
-|+-++|+.....+ ..|-.++.+..-|++|- ..+..+.|+++|+++.+..|... .-.+++..+...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 35556666654443 33334444544555552 34566789999999999988743 3345666555555
Q ss_pred C-HHHHHHHHHHHhhccc-----c---cHHHHHHHHH---HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 106 D-AWNALKAATRATELEQ-----S---WAEAWITLGR---AQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 106 ~-~~~A~~~~~~al~~~p-----~---~~~~~~~lg~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
+ ++...+.-.-+..++. . ....+-..|. +-.-.+++.+|++.-++.+++.|...-....+..
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 4 3333333332332221 1 1111111111 1223578999999999999998876544433333
No 495
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=55.66 E-value=37 Score=19.32 Aligned_cols=16 Identities=38% Similarity=0.268 Sum_probs=7.8
Q ss_pred cCCHHHHHHHHHHHhh
Q 029105 104 LGDAWNALKAATRATE 119 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~ 119 (199)
.|++++|+..|..+++
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4555555554444443
No 496
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=55.46 E-value=52 Score=20.93 Aligned_cols=42 Identities=12% Similarity=-0.064 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHHHHH
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARDDRQ 166 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~ 166 (199)
...+..+..++...|++..|++......+..|= ....|..|-
T Consensus 52 ~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 52 SRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456677777888888888888888777766542 234454443
No 497
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.03 E-value=32 Score=26.34 Aligned_cols=48 Identities=13% Similarity=-0.025 Sum_probs=35.5
Q ss_pred hhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREA 76 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A 76 (199)
...|+..+.+++++.|...|..+ ..-....+++.+|..++..+++...
T Consensus 45 v~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 45 VQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999888776 2334567777788887777665543
No 498
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=54.65 E-value=96 Score=23.77 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=47.3
Q ss_pred HcCCH-HHHHHHHHHHhhcccc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Q 029105 103 ELGDA-WNALKAATRATELEQS---WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-EEARDDRQTALH 170 (199)
Q Consensus 103 ~~~~~-~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 170 (199)
..|.. ++.+..+...+..-|+ .+..|.-++.+....|.++..+..|++|+.....- .++...+..++.
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34554 3566677777776664 55678888888888888888888888888876553 344555555554
No 499
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.47 E-value=39 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.297 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHHH
Q 029105 104 LGDAWNALKAATR 116 (199)
Q Consensus 104 ~~~~~~A~~~~~~ 116 (199)
.|++++|+.+|..
T Consensus 21 ~g~~~eAl~~Y~~ 33 (77)
T smart00745 21 AGDYEEALELYKK 33 (77)
T ss_pred cCCHHHHHHHHHH
Confidence 3444444433333
No 500
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=53.38 E-value=96 Score=23.43 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred hhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 029105 35 GAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (199)
+...|....|...-....-| +-..|+.....+...++|++-..+... ...|.-|.-...+....|+..+|..+.
T Consensus 187 li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHH
Q ss_pred HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
.+ ... -.....|...|++.+|.+...+
T Consensus 261 ~k--------~~~-~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 261 PK--------IPD-EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred Hh--------CCh-HHHHHHHHHCCCHHHHHHHHHH
Done!