Query 029105
Match_columns 199
No_of_seqs 385 out of 1369
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 12:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ga2_A E3 SUMO-protein ligase 99.9 1.6E-27 5.5E-32 156.2 11.4 145 30-174 2-149 (150)
2 3vtx_A MAMA; tetratricopeptide 99.9 1.3E-26 4.5E-31 156.5 14.6 161 29-189 9-171 (184)
3 4gyw_A UDP-N-acetylglucosamine 99.9 8.1E-27 2.8E-31 186.1 13.9 161 27-187 11-173 (723)
4 2pl2_A Hypothetical conserved 99.9 1.8E-26 6.1E-31 160.1 13.8 156 29-185 9-177 (217)
5 4gco_A Protein STI-1; structur 99.9 8.8E-26 3E-30 143.6 15.3 118 52-169 8-125 (126)
6 2pl2_A Hypothetical conserved 99.9 5.9E-26 2E-30 157.5 13.2 168 14-184 30-210 (217)
7 4i17_A Hypothetical protein; T 99.9 2.3E-24 7.9E-29 150.2 13.9 150 26-175 8-169 (228)
8 2h6f_A Protein farnesyltransfe 99.9 9.5E-25 3.3E-29 162.9 11.8 150 29-178 101-254 (382)
9 3gyz_A Chaperone protein IPGC; 99.9 1.6E-23 5.4E-28 136.9 15.5 126 34-159 11-138 (151)
10 4gyw_A UDP-N-acetylglucosamine 99.9 1.4E-23 4.8E-28 167.5 15.7 137 52-188 4-140 (723)
11 1p5q_A FKBP52, FK506-binding p 99.9 3.3E-23 1.1E-27 152.5 16.1 150 37-186 125-291 (336)
12 3as5_A MAMA; tetratricopeptide 99.9 1.3E-22 4.6E-27 136.1 15.2 160 29-188 12-173 (186)
13 2q7f_A YRRB protein; TPR, prot 99.9 9.2E-23 3.1E-27 142.8 14.4 154 29-182 27-182 (243)
14 4ga2_A E3 SUMO-protein ligase 99.9 1E-23 3.5E-28 138.0 8.4 122 62-183 2-123 (150)
15 2vgx_A Chaperone SYCD; alterna 99.9 1.6E-22 5.4E-27 132.0 13.6 124 52-175 16-139 (148)
16 3uq3_A Heat shock protein STI1 99.9 1.3E-22 4.3E-27 143.1 13.8 164 26-189 39-237 (258)
17 4abn_A Tetratricopeptide repea 99.9 2.5E-23 8.6E-28 159.7 9.6 153 29-182 141-315 (474)
18 4abn_A Tetratricopeptide repea 99.9 1.8E-22 6E-27 155.0 14.2 161 26-187 103-286 (474)
19 2h6f_A Protein farnesyltransfe 99.9 3E-22 1E-26 149.5 15.0 154 34-187 65-228 (382)
20 3upv_A Heat shock protein STI1 99.9 7.2E-22 2.5E-26 125.3 14.7 118 54-171 1-124 (126)
21 2q7f_A YRRB protein; TPR, prot 99.9 3.4E-22 1.1E-26 139.9 14.4 161 27-187 59-221 (243)
22 3urz_A Uncharacterized protein 99.9 1.4E-22 4.9E-27 139.5 12.0 160 28-188 7-186 (208)
23 2fbn_A 70 kDa peptidylprolyl i 99.9 1.1E-21 3.7E-26 133.9 16.3 155 31-185 10-182 (198)
24 3qky_A Outer membrane assembly 99.9 1.4E-22 4.7E-27 144.0 12.2 162 26-187 16-223 (261)
25 2xcb_A PCRH, regulatory protei 99.9 8.3E-22 2.9E-26 127.7 14.2 126 52-177 13-138 (142)
26 1kt0_A FKBP51, 51 kDa FK506-bi 99.9 3.9E-22 1.3E-26 152.4 14.7 151 37-187 246-413 (457)
27 1w3b_A UDP-N-acetylglucosamine 99.9 3.2E-22 1.1E-26 149.5 13.9 157 29-185 207-365 (388)
28 4eqf_A PEX5-related protein; a 99.9 3.6E-22 1.2E-26 148.1 13.9 158 28-185 68-273 (365)
29 2vq2_A PILW, putative fimbrial 99.9 6.8E-22 2.3E-26 136.6 14.2 158 29-186 12-174 (225)
30 2ho1_A Type 4 fimbrial biogene 99.9 8.9E-22 3E-26 138.7 14.7 157 29-185 41-201 (252)
31 2r5s_A Uncharacterized protein 99.9 2.3E-22 7.8E-27 134.9 11.1 160 28-188 9-173 (176)
32 1w3b_A UDP-N-acetylglucosamine 99.9 6.1E-22 2.1E-26 148.0 14.5 153 30-182 140-294 (388)
33 4i17_A Hypothetical protein; T 99.9 3.9E-22 1.3E-26 138.9 12.5 145 26-170 43-225 (228)
34 4eqf_A PEX5-related protein; a 99.9 2.1E-22 7.3E-27 149.3 11.8 162 29-190 103-312 (365)
35 3vtx_A MAMA; tetratricopeptide 99.9 1.9E-21 6.4E-26 131.1 14.8 133 55-187 3-135 (184)
36 3urz_A Uncharacterized protein 99.9 2.5E-21 8.4E-26 133.3 14.6 121 56-176 3-139 (208)
37 3rkv_A Putative peptidylprolyl 99.9 2.5E-21 8.4E-26 128.1 13.8 130 55-184 9-157 (162)
38 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.3E-21 4.4E-26 136.3 12.9 157 27-183 6-208 (225)
39 1fch_A Peroxisomal targeting s 99.9 7.4E-22 2.5E-26 146.2 12.3 157 30-187 187-358 (368)
40 3uq3_A Heat shock protein STI1 99.9 7.6E-22 2.6E-26 139.1 11.6 159 28-187 8-201 (258)
41 3hym_B Cell division cycle pro 99.9 2.6E-21 9.1E-26 140.9 14.6 171 15-187 117-298 (330)
42 3sz7_A HSC70 cochaperone (SGT) 99.9 5.8E-21 2E-25 126.6 14.8 124 53-176 7-132 (164)
43 1fch_A Peroxisomal targeting s 99.9 5E-21 1.7E-25 141.7 16.0 169 17-185 54-277 (368)
44 3gyz_A Chaperone protein IPGC; 99.9 1.7E-22 5.7E-27 132.1 6.9 120 69-188 14-133 (151)
45 3hym_B Cell division cycle pro 99.9 3.2E-21 1.1E-25 140.5 14.4 158 31-188 62-222 (330)
46 2ho1_A Type 4 fimbrial biogene 99.9 4.5E-21 1.5E-25 135.1 14.6 160 27-186 73-236 (252)
47 3mkr_A Coatomer subunit epsilo 99.9 3.1E-21 1.1E-25 139.3 13.9 153 27-182 103-257 (291)
48 2vyi_A SGTA protein; chaperone 99.9 2.4E-20 8.2E-25 118.2 16.4 124 52-175 7-130 (131)
49 3ieg_A DNAJ homolog subfamily 99.9 3.5E-21 1.2E-25 141.6 14.0 161 27-187 39-216 (359)
50 4gcn_A Protein STI-1; structur 99.9 1.5E-20 5.2E-25 119.5 15.1 112 54-166 5-123 (127)
51 2vsy_A XCC0866; transferase, g 99.9 4.4E-21 1.5E-25 150.3 15.1 150 38-187 2-156 (568)
52 2pzi_A Probable serine/threoni 99.9 2.5E-22 8.6E-27 160.3 8.2 147 27-174 435-583 (681)
53 3qky_A Outer membrane assembly 99.9 6.1E-21 2.1E-25 135.5 14.2 167 14-180 40-253 (261)
54 3cv0_A Peroxisome targeting si 99.9 5E-21 1.7E-25 139.3 14.1 158 34-191 147-318 (327)
55 3qou_A Protein YBBN; thioredox 99.9 1.2E-21 4.1E-26 141.3 10.3 159 29-187 121-283 (287)
56 2lni_A Stress-induced-phosphop 99.9 1.6E-20 5.4E-25 119.6 13.6 123 52-174 11-133 (133)
57 2pzi_A Probable serine/threoni 99.9 1.1E-21 3.8E-26 156.5 10.0 151 36-187 402-562 (681)
58 3ieg_A DNAJ homolog subfamily 99.9 1E-20 3.6E-25 139.1 14.3 159 29-187 7-182 (359)
59 3u4t_A TPR repeat-containing p 99.9 1.6E-21 5.4E-26 138.9 9.4 174 14-189 28-209 (272)
60 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.4E-20 8.2E-25 132.8 15.3 154 31-185 11-170 (275)
61 3u4t_A TPR repeat-containing p 99.9 4.6E-21 1.6E-25 136.5 11.5 158 29-187 7-170 (272)
62 2vq2_A PILW, putative fimbrial 99.9 2.5E-20 8.5E-25 128.7 14.3 157 27-183 44-206 (225)
63 2hr2_A Hypothetical protein; a 99.9 4.8E-21 1.6E-25 124.3 9.9 118 56-173 10-150 (159)
64 1a17_A Serine/threonine protei 99.8 1.8E-19 6E-24 119.0 17.1 131 55-185 11-143 (166)
65 4gco_A Protein STI-1; structur 99.8 4.6E-21 1.6E-25 121.7 9.0 109 27-135 15-125 (126)
66 1qqe_A Vesicular transport pro 99.8 2.2E-20 7.4E-25 135.0 13.6 157 31-187 43-227 (292)
67 3q49_B STIP1 homology and U bo 99.8 3.2E-20 1.1E-24 119.1 13.0 125 53-177 5-134 (137)
68 1hh8_A P67PHOX, NCF-2, neutrop 99.8 3.5E-20 1.2E-24 127.5 14.1 137 28-165 9-161 (213)
69 2y4t_A DNAJ homolog subfamily 99.8 2.6E-20 8.9E-25 141.4 14.4 158 29-186 30-204 (450)
70 2e2e_A Formate-dependent nitri 99.8 1.9E-20 6.6E-25 125.4 11.6 136 32-167 17-157 (177)
71 2y4t_A DNAJ homolog subfamily 99.8 4.5E-20 1.5E-24 140.1 14.5 160 28-187 180-357 (450)
72 1elw_A TPR1-domain of HOP; HOP 99.8 5.8E-19 2E-23 109.8 15.9 114 56-169 3-116 (118)
73 3fp2_A TPR repeat-containing p 99.8 3.6E-20 1.2E-24 143.5 12.2 161 28-189 246-408 (537)
74 1hxi_A PEX5, peroxisome target 99.8 6.9E-20 2.3E-24 115.4 11.3 102 59-160 19-120 (121)
75 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.3E-19 4.5E-24 128.9 13.9 157 29-186 47-242 (275)
76 3cv0_A Peroxisome targeting si 99.8 2.6E-20 8.9E-25 135.5 10.1 160 29-188 59-269 (327)
77 1ihg_A Cyclophilin 40; ppiase 99.8 3.2E-19 1.1E-23 132.8 16.0 132 54-185 220-367 (370)
78 1na0_A Designed protein CTPR3; 99.8 7.5E-19 2.6E-23 110.3 15.3 118 56-173 8-125 (125)
79 2xpi_A Anaphase-promoting comp 99.8 1.1E-19 3.7E-24 142.6 14.0 156 30-185 412-576 (597)
80 2vgx_A Chaperone SYCD; alterna 99.8 2.7E-20 9.1E-25 121.4 8.2 114 75-188 5-118 (148)
81 3edt_B KLC 2, kinesin light ch 99.8 9E-20 3.1E-24 129.9 11.4 159 28-186 46-279 (283)
82 2fo7_A Synthetic consensus TPR 99.8 7.2E-19 2.5E-23 111.7 14.5 128 58-185 2-129 (136)
83 1elr_A TPR2A-domain of HOP; HO 99.8 1.2E-18 4.3E-23 110.2 15.5 122 54-176 1-129 (131)
84 2xpi_A Anaphase-promoting comp 99.8 2E-19 6.8E-24 141.1 14.2 136 53-188 369-504 (597)
85 3ulq_A Response regulator aspa 99.8 1.5E-19 5.1E-24 135.0 12.3 161 30-190 108-295 (383)
86 2fo7_A Synthetic consensus TPR 99.8 4E-19 1.4E-23 112.9 11.8 130 29-158 5-136 (136)
87 2gw1_A Mitochondrial precursor 99.8 1.2E-19 4E-24 139.7 10.8 171 15-187 296-477 (514)
88 2dba_A Smooth muscle cell asso 99.8 1.6E-18 5.6E-23 112.2 14.6 118 52-169 23-143 (148)
89 3edt_B KLC 2, kinesin light ch 99.8 3.5E-19 1.2E-23 126.8 11.4 151 38-188 14-198 (283)
90 2xev_A YBGF; tetratricopeptide 99.8 1.9E-18 6.4E-23 109.6 13.6 115 58-172 3-123 (129)
91 2gw1_A Mitochondrial precursor 99.8 1.3E-19 4.3E-24 139.5 9.4 159 29-188 241-401 (514)
92 1hh8_A P67PHOX, NCF-2, neutrop 99.8 1.9E-18 6.4E-23 118.8 14.3 131 55-188 4-150 (213)
93 1wao_1 Serine/threonine protei 99.8 2.2E-19 7.5E-24 137.9 10.2 130 54-183 3-134 (477)
94 3as5_A MAMA; tetratricopeptide 99.8 1.9E-18 6.3E-23 115.7 13.6 132 55-186 6-137 (186)
95 3fp2_A TPR repeat-containing p 99.8 1.6E-19 5.4E-24 139.8 9.1 156 30-185 315-488 (537)
96 3nf1_A KLC 1, kinesin light ch 99.8 6E-19 2E-23 127.4 11.1 160 28-187 72-306 (311)
97 1qqe_A Vesicular transport pro 99.8 8.5E-19 2.9E-23 126.6 11.8 156 28-183 80-264 (292)
98 3mkr_A Coatomer subunit epsilo 99.8 9.7E-19 3.3E-23 126.3 12.0 155 29-188 69-229 (291)
99 3nf1_A KLC 1, kinesin light ch 99.8 6.8E-19 2.3E-23 127.2 11.2 160 29-188 31-224 (311)
100 2vsy_A XCC0866; transferase, g 99.8 7.6E-19 2.6E-23 137.6 12.2 151 14-166 14-169 (568)
101 2xcb_A PCRH, regulatory protei 99.8 4.7E-19 1.6E-23 114.6 8.7 111 78-188 5-115 (142)
102 1ouv_A Conserved hypothetical 99.8 4.4E-18 1.5E-22 121.4 14.3 149 29-183 10-174 (273)
103 3q15_A PSP28, response regulat 99.8 1.8E-18 6.1E-23 129.1 12.4 161 29-189 105-291 (378)
104 1zu2_A Mitochondrial import re 99.8 1E-18 3.6E-23 113.2 9.2 103 68-170 13-136 (158)
105 2ond_A Cleavage stimulation fa 99.8 2.6E-18 8.7E-23 124.9 12.1 144 42-185 81-229 (308)
106 2kck_A TPR repeat; tetratricop 99.8 1.7E-18 5.7E-23 106.7 9.6 107 53-159 2-111 (112)
107 3qou_A Protein YBBN; thioredox 99.8 3.3E-18 1.1E-22 123.2 12.3 136 53-188 113-248 (287)
108 2if4_A ATFKBP42; FKBP-like, al 99.8 5.7E-19 2E-23 130.0 8.1 131 52-182 174-322 (338)
109 2e2e_A Formate-dependent nitri 99.8 1E-18 3.4E-23 117.0 8.6 123 66-188 19-144 (177)
110 3rjv_A Putative SEL1 repeat pr 99.8 2.1E-18 7.3E-23 118.9 10.3 159 26-188 19-197 (212)
111 3k9i_A BH0479 protein; putativ 99.8 1.1E-18 3.7E-23 109.2 7.9 105 69-173 2-109 (117)
112 2ond_A Cleavage stimulation fa 99.8 7.4E-18 2.5E-22 122.5 13.5 162 28-189 102-271 (308)
113 2r5s_A Uncharacterized protein 99.8 1.7E-18 5.9E-23 115.9 8.4 134 54-188 3-137 (176)
114 1a17_A Serine/threonine protei 99.8 5.1E-18 1.7E-22 111.9 10.6 126 29-154 17-146 (166)
115 2c2l_A CHIP, carboxy terminus 99.8 1.5E-17 5E-22 119.5 13.7 104 55-158 2-105 (281)
116 1p5q_A FKBP52, FK506-binding p 99.8 5.4E-18 1.9E-22 124.7 10.8 126 29-154 151-294 (336)
117 1ouv_A Conserved hypothetical 99.8 2.3E-17 7.8E-22 117.7 13.5 149 29-183 42-210 (273)
118 2c2l_A CHIP, carboxy terminus 99.8 3.8E-18 1.3E-22 122.6 9.4 159 27-187 6-198 (281)
119 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.7E-17 5.8E-22 115.4 12.3 132 56-187 3-175 (225)
120 3sf4_A G-protein-signaling mod 99.7 5.8E-18 2E-22 126.5 10.3 162 28-189 130-337 (406)
121 2qfc_A PLCR protein; TPR, HTH, 99.7 3.2E-17 1.1E-21 118.3 13.4 155 30-184 80-262 (293)
122 4g1t_A Interferon-induced prot 99.7 1.1E-17 3.6E-22 127.9 11.2 161 27-187 96-275 (472)
123 3upv_A Heat shock protein STI1 99.7 1.2E-17 4.3E-22 105.5 9.7 109 29-137 8-124 (126)
124 3u3w_A Transcriptional activat 99.7 2.2E-17 7.5E-22 119.2 11.6 163 32-194 82-272 (293)
125 2lni_A Stress-induced-phosphop 99.7 2.6E-17 8.7E-22 104.5 10.1 114 27-140 18-133 (133)
126 4g1t_A Interferon-induced prot 99.7 3.6E-17 1.2E-21 125.0 12.6 154 29-182 55-236 (472)
127 2ifu_A Gamma-SNAP; membrane fu 99.7 1.2E-17 4.1E-22 121.4 9.4 155 31-186 42-222 (307)
128 3rkv_A Putative peptidylprolyl 99.7 2.2E-17 7.4E-22 109.0 9.3 114 28-141 14-148 (162)
129 3sf4_A G-protein-signaling mod 99.7 1.3E-17 4.5E-22 124.6 9.1 159 29-187 91-295 (406)
130 3gw4_A Uncharacterized protein 99.7 3E-17 1E-21 111.7 10.2 158 36-194 3-182 (203)
131 3ro2_A PINS homolog, G-protein 99.7 1.3E-17 4.6E-22 121.2 8.9 162 28-189 126-333 (338)
132 4a1s_A PINS, partner of inscut 99.7 1.5E-17 5.3E-22 124.8 9.2 158 29-186 130-330 (411)
133 4a1s_A PINS, partner of inscut 99.7 8.5E-18 2.9E-22 126.2 7.7 159 29-187 90-291 (411)
134 1wao_1 Serine/threonine protei 99.7 3.2E-18 1.1E-22 131.4 5.3 130 29-158 10-154 (477)
135 3ulq_A Response regulator aspa 99.7 7.8E-17 2.7E-21 120.3 12.5 161 28-189 187-369 (383)
136 2vyi_A SGTA protein; chaperone 99.7 5E-17 1.7E-21 102.7 9.8 114 29-142 16-131 (131)
137 4gcn_A Protein STI-1; structur 99.7 2.5E-17 8.6E-22 104.5 7.9 99 89-187 6-111 (127)
138 1hxi_A PEX5, peroxisome target 99.7 1.6E-16 5.4E-21 99.9 11.5 97 92-188 18-114 (121)
139 3sz7_A HSC70 cochaperone (SGT) 99.7 1.6E-16 5.3E-21 105.1 11.1 102 87-188 7-108 (164)
140 3ro2_A PINS homolog, G-protein 99.7 5.2E-17 1.8E-21 118.0 8.8 156 30-185 88-289 (338)
141 2fbn_A 70 kDa peptidylprolyl i 99.7 5E-17 1.7E-21 110.7 8.2 123 29-151 42-183 (198)
142 2if4_A ATFKBP42; FKBP-like, al 99.7 1.7E-17 5.8E-22 122.2 6.2 132 29-160 183-334 (338)
143 2hr2_A Hypothetical protein; a 99.7 2.4E-16 8.1E-21 102.3 10.6 101 91-191 11-134 (159)
144 3q49_B STIP1 homology and U bo 99.7 4E-16 1.4E-20 99.8 11.5 106 85-190 3-108 (137)
145 3k9i_A BH0479 protein; putativ 99.7 1.7E-16 5.9E-21 99.1 9.3 101 37-137 2-107 (117)
146 2ifu_A Gamma-SNAP; membrane fu 99.7 3.5E-16 1.2E-20 113.6 12.1 147 29-178 80-251 (307)
147 3q15_A PSP28, response regulat 99.7 3.6E-16 1.2E-20 116.6 12.4 128 28-155 144-291 (378)
148 3dra_A Protein farnesyltransfe 99.7 4.5E-16 1.5E-20 112.5 12.1 139 36-174 43-195 (306)
149 3rjv_A Putative SEL1 repeat pr 99.7 1.8E-16 6.1E-21 109.3 9.5 141 42-187 3-157 (212)
150 3ro3_A PINS homolog, G-protein 99.7 6.4E-16 2.2E-20 101.0 11.5 135 54-188 6-158 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.5E-16 5E-21 121.6 9.6 119 29-147 272-407 (457)
152 2kat_A Uncharacterized protein 99.7 2E-15 6.9E-20 93.8 12.6 103 75-177 3-107 (115)
153 1na0_A Designed protein CTPR3; 99.7 7.7E-16 2.6E-20 96.3 10.1 112 28-139 12-125 (125)
154 1elw_A TPR1-domain of HOP; HOP 99.7 6.9E-16 2.4E-20 95.6 9.8 108 29-136 8-117 (118)
155 4f3v_A ESX-1 secretion system 99.7 2.6E-15 8.8E-20 106.6 13.6 136 29-166 106-248 (282)
156 3dra_A Protein farnesyltransfe 99.7 1.9E-15 6.4E-20 109.3 12.7 152 29-180 71-241 (306)
157 2l6j_A TPR repeat-containing p 99.7 1.2E-16 4E-21 98.5 5.5 91 91-181 4-100 (111)
158 2kck_A TPR repeat; tetratricop 99.7 4.3E-16 1.5E-20 95.8 7.9 102 86-187 1-105 (112)
159 1dce_A Protein (RAB geranylger 99.7 1.3E-15 4.6E-20 119.0 12.4 138 35-172 38-191 (567)
160 2l6j_A TPR repeat-containing p 99.6 2.3E-15 7.9E-20 92.6 10.8 95 56-150 3-103 (111)
161 2dba_A Smooth muscle cell asso 99.6 3E-15 1E-19 96.7 11.5 113 26-138 29-146 (148)
162 1dce_A Protein (RAB geranylger 99.6 5.7E-16 1.9E-20 121.1 9.0 149 29-177 67-244 (567)
163 1zu2_A Mitochondrial import re 99.6 2.1E-16 7.1E-21 102.4 5.4 93 33-125 10-125 (158)
164 2xev_A YBGF; tetratricopeptide 99.6 1.6E-15 5.6E-20 95.9 9.5 111 29-139 6-124 (129)
165 1ihg_A Cyclophilin 40; ppiase 99.6 1.8E-15 6E-20 112.7 11.1 119 29-147 227-363 (370)
166 2ooe_A Cleavage stimulation fa 99.6 1.8E-15 6.3E-20 117.5 11.0 149 38-186 292-452 (530)
167 3dss_A Geranylgeranyl transfer 99.6 1.4E-14 4.8E-19 105.4 14.8 137 36-172 40-192 (331)
168 3ro3_A PINS homolog, G-protein 99.6 4.2E-15 1.4E-19 97.1 10.7 129 29-157 13-161 (164)
169 1na3_A Designed protein CTPR2; 99.6 8.5E-15 2.9E-19 86.8 11.1 83 90-172 8-90 (91)
170 1na3_A Designed protein CTPR2; 99.6 1.1E-14 3.9E-19 86.3 11.3 86 54-139 6-91 (91)
171 3u3w_A Transcriptional activat 99.6 4.8E-15 1.6E-19 106.9 11.1 125 30-154 120-266 (293)
172 2ooe_A Cleavage stimulation fa 99.6 1.2E-14 4E-19 113.0 12.8 160 29-188 325-492 (530)
173 1hz4_A MALT regulatory protein 99.6 2.5E-14 8.4E-19 106.3 13.2 157 29-185 18-200 (373)
174 3q7a_A Farnesyltransferase alp 99.6 1.1E-14 3.9E-19 106.4 11.0 138 37-174 66-216 (349)
175 3gw4_A Uncharacterized protein 99.6 1.2E-14 4.3E-19 98.7 10.1 131 27-157 28-179 (203)
176 2xm6_A Protein corresponding t 99.6 3.2E-14 1.1E-18 109.6 13.5 155 28-188 258-432 (490)
177 2xm6_A Protein corresponding t 99.6 5.1E-14 1.7E-18 108.4 14.2 152 29-186 43-214 (490)
178 3q7a_A Farnesyltransferase alp 99.6 2.2E-14 7.6E-19 104.9 11.3 147 29-175 92-258 (349)
179 3dss_A Geranylgeranyl transfer 99.6 2.6E-14 8.7E-19 104.0 11.6 132 41-172 90-240 (331)
180 2qfc_A PLCR protein; TPR, HTH, 99.6 2.2E-13 7.4E-18 98.2 16.2 137 53-189 71-226 (293)
181 4f3v_A ESX-1 secretion system 99.6 2.9E-15 1E-19 106.3 6.2 130 57-187 102-236 (282)
182 1elr_A TPR2A-domain of HOP; HO 99.6 5.2E-15 1.8E-19 93.3 6.7 110 29-139 8-126 (131)
183 3ma5_A Tetratricopeptide repea 99.6 4.3E-14 1.5E-18 85.7 10.2 89 86-174 2-92 (100)
184 3e4b_A ALGK; tetratricopeptide 99.6 2E-14 6.8E-19 109.8 10.3 150 28-186 179-349 (452)
185 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-13 4.2E-18 105.4 12.8 152 29-186 145-314 (452)
186 2kc7_A BFR218_protein; tetratr 99.5 1.3E-14 4.3E-19 87.7 5.5 88 62-157 5-93 (99)
187 1hz4_A MALT regulatory protein 99.5 3.8E-13 1.3E-17 99.8 13.7 157 29-185 57-241 (373)
188 3n71_A Histone lysine methyltr 99.5 3E-13 1E-17 103.8 12.6 128 61-188 313-464 (490)
189 3ma5_A Tetratricopeptide repea 99.5 2E-13 6.7E-18 82.7 8.9 86 53-138 3-90 (100)
190 2kat_A Uncharacterized protein 99.5 2.3E-13 7.8E-18 84.4 7.9 95 43-137 3-101 (115)
191 1klx_A Cysteine rich protein B 99.5 6.6E-13 2.2E-17 85.2 9.8 120 39-166 9-136 (138)
192 3mv2_B Coatomer subunit epsilo 99.5 1.4E-12 4.9E-17 93.7 12.3 143 29-174 104-270 (310)
193 3n71_A Histone lysine methyltr 99.4 6.4E-13 2.2E-17 101.9 10.5 123 32-154 316-464 (490)
194 2kc7_A BFR218_protein; tetratr 99.4 3.5E-12 1.2E-16 76.7 10.6 77 95-171 4-83 (99)
195 1pc2_A Mitochondria fission pr 99.4 1.7E-11 5.9E-16 78.6 12.2 102 71-172 12-118 (152)
196 3mv2_B Coatomer subunit epsilo 99.4 2.6E-11 8.7E-16 87.3 13.5 137 44-183 85-235 (310)
197 4b4t_Q 26S proteasome regulato 99.3 5.6E-12 1.9E-16 95.2 10.3 157 30-186 9-202 (434)
198 3bee_A Putative YFRE protein; 99.3 2.4E-11 8.2E-16 72.3 10.8 73 87-159 2-77 (93)
199 1b89_A Protein (clathrin heavy 99.3 1.3E-11 4.6E-16 92.5 11.8 144 29-187 126-271 (449)
200 4b4t_Q 26S proteasome regulato 99.3 6.4E-12 2.2E-16 94.9 9.8 163 28-190 58-247 (434)
201 1xi4_A Clathrin heavy chain; a 99.3 2.1E-11 7.1E-16 101.9 13.3 142 31-185 1055-1247(1630)
202 1b89_A Protein (clathrin heavy 99.3 1.9E-12 6.5E-17 97.1 5.5 79 92-183 123-201 (449)
203 1klx_A Cysteine rich protein B 99.3 3.3E-11 1.1E-15 77.2 10.3 111 70-188 8-126 (138)
204 1xi4_A Clathrin heavy chain; a 99.3 1.5E-10 5E-15 96.9 14.6 141 26-182 1106-1273(1630)
205 3qwp_A SET and MYND domain-con 99.3 1.1E-10 3.7E-15 88.4 12.9 114 60-173 290-427 (429)
206 2v5f_A Prolyl 4-hydroxylase su 99.2 2.3E-10 7.8E-15 69.6 11.4 78 91-168 5-89 (104)
207 3qww_A SET and MYND domain-con 99.2 3.4E-10 1.2E-14 85.6 13.1 95 68-162 309-424 (433)
208 2v5f_A Prolyl 4-hydroxylase su 99.2 3.8E-10 1.3E-14 68.6 10.6 77 56-132 4-87 (104)
209 3bee_A Putative YFRE protein; 99.2 8.4E-11 2.9E-15 69.9 7.4 72 53-124 2-76 (93)
210 3ly7_A Transcriptional activat 99.2 3E-10 1E-14 83.3 10.9 135 25-160 196-345 (372)
211 3ly7_A Transcriptional activat 99.1 3.3E-09 1.1E-13 77.8 12.2 129 58-187 197-338 (372)
212 1pc2_A Mitochondria fission pr 99.0 7.2E-10 2.5E-14 71.1 7.4 83 53-135 28-115 (152)
213 3qwp_A SET and MYND domain-con 99.0 7.3E-10 2.5E-14 83.9 8.7 105 34-138 296-426 (429)
214 3u64_A Protein TP_0956; tetrat 99.0 9E-09 3.1E-13 72.8 12.8 107 52-158 147-273 (301)
215 3qww_A SET and MYND domain-con 99.0 1.2E-09 4.2E-14 82.6 8.7 92 36-127 309-423 (433)
216 1nzn_A CGI-135 protein, fissio 99.0 4.3E-08 1.5E-12 60.7 13.1 102 70-171 14-120 (126)
217 4e6h_A MRNA 3'-END-processing 98.9 1E-08 3.5E-13 81.7 11.3 155 32-186 350-531 (679)
218 4e6h_A MRNA 3'-END-processing 98.8 5.8E-08 2E-12 77.4 11.3 152 31-182 384-564 (679)
219 3u64_A Protein TP_0956; tetrat 98.7 1.3E-07 4.6E-12 66.9 8.8 102 85-186 146-267 (301)
220 3ffl_A Anaphase-promoting comp 98.6 6.9E-07 2.4E-11 57.7 9.9 112 57-169 20-165 (167)
221 4h7y_A Dual specificity protei 98.5 2E-06 6.7E-11 54.6 10.1 109 52-161 8-130 (161)
222 1nzn_A CGI-135 protein, fissio 98.5 7.8E-07 2.7E-11 55.1 8.1 81 54-134 32-117 (126)
223 3o48_A Mitochondria fission 1 98.5 1.1E-05 3.7E-10 50.1 13.0 83 90-172 39-125 (134)
224 4g26_A Pentatricopeptide repea 98.5 8.5E-06 2.9E-10 63.0 15.1 148 33-182 34-198 (501)
225 1y8m_A FIS1; mitochondria, unk 98.5 3.3E-06 1.1E-10 53.1 9.9 83 89-171 37-123 (144)
226 1y8m_A FIS1; mitochondria, unk 98.4 2.8E-05 9.7E-10 48.9 13.6 82 54-135 36-121 (144)
227 2uy1_A Cleavage stimulation fa 98.4 6.6E-06 2.3E-10 63.5 12.7 133 46-180 200-375 (493)
228 3o48_A Mitochondria fission 1 98.3 1.2E-05 3.9E-10 50.0 9.5 80 56-135 39-122 (134)
229 3ffl_A Anaphase-promoting comp 98.0 4.8E-05 1.6E-09 49.2 8.5 91 92-182 21-145 (167)
230 2uy1_A Cleavage stimulation fa 98.0 0.00023 7.7E-09 55.0 13.3 124 57-185 286-410 (493)
231 4g26_A Pentatricopeptide repea 97.9 0.00023 8E-09 55.0 11.7 129 39-170 84-221 (501)
232 4h7y_A Dual specificity protei 97.8 0.00023 7.8E-09 45.2 8.9 100 85-185 7-120 (161)
233 1ya0_A SMG-7 transcript varian 97.7 0.00043 1.5E-08 53.3 11.0 81 92-172 153-233 (497)
234 4gns_B Protein CSD3, chitin bi 97.7 0.00074 2.5E-08 54.5 11.7 112 70-182 261-394 (754)
235 2ff4_A Probable regulatory pro 97.5 0.0044 1.5E-07 46.3 13.6 94 60-153 118-233 (388)
236 4gns_B Protein CSD3, chitin bi 97.5 0.00073 2.5E-08 54.5 9.8 81 71-151 299-397 (754)
237 1ya0_A SMG-7 transcript varian 97.4 0.0015 5.2E-08 50.3 10.4 79 58-136 153-231 (497)
238 3kae_A CDC27, possible protein 97.3 0.013 4.3E-07 38.3 11.6 105 52-161 28-150 (242)
239 1zbp_A Hypothetical protein VP 97.3 0.009 3.1E-07 41.9 11.7 61 66-126 6-66 (273)
240 3txn_A 26S proteasome regulato 97.2 0.0064 2.2E-07 45.4 11.0 91 62-152 104-208 (394)
241 3mkq_A Coatomer beta'-subunit; 96.7 0.05 1.7E-06 44.2 13.5 46 67-117 662-707 (814)
242 4b4t_S RPN3, 26S proteasome re 96.7 0.0059 2E-07 47.0 7.1 142 36-177 147-329 (523)
243 3spa_A Mtrpol, DNA-directed RN 96.6 0.068 2.3E-06 44.8 13.1 100 55-155 125-231 (1134)
244 3kae_A CDC27, possible protein 96.5 0.08 2.7E-06 34.6 14.0 92 29-123 37-146 (242)
245 4fhn_B Nucleoporin NUP120; pro 96.5 0.039 1.4E-06 47.1 11.6 114 66-183 821-962 (1139)
246 1zbp_A Hypothetical protein VP 96.4 0.037 1.3E-06 38.9 9.2 62 100-161 6-67 (273)
247 3mkq_A Coatomer beta'-subunit; 96.4 0.034 1.2E-06 45.2 10.6 43 103-150 664-706 (814)
248 4b4t_R RPN7, 26S proteasome re 96.4 0.051 1.7E-06 41.2 10.8 99 58-156 132-239 (429)
249 3txn_A 26S proteasome regulato 96.4 0.11 3.8E-06 38.8 12.3 113 30-142 104-237 (394)
250 2ff4_A Probable regulatory pro 96.3 0.021 7.1E-07 42.7 8.3 63 58-120 172-234 (388)
251 4b4t_P 26S proteasome regulato 96.0 0.23 7.9E-06 37.8 12.6 100 55-154 135-247 (445)
252 4b4t_P 26S proteasome regulato 95.9 0.084 2.9E-06 40.2 10.0 92 29-120 141-247 (445)
253 4fhn_B Nucleoporin NUP120; pro 95.9 0.11 3.8E-06 44.4 11.7 123 56-179 841-991 (1139)
254 3mkq_B Coatomer subunit alpha; 95.7 0.23 7.9E-06 32.6 10.2 101 35-151 15-115 (177)
255 3spa_A Mtrpol, DNA-directed RN 95.5 0.2 7E-06 42.1 11.2 87 92-179 128-221 (1134)
256 3mkq_B Coatomer subunit alpha; 95.4 0.13 4.5E-06 33.8 7.9 49 66-119 14-62 (177)
257 4b4t_R RPN7, 26S proteasome re 95.3 0.067 2.3E-06 40.5 7.5 92 29-120 135-237 (429)
258 1qsa_A Protein (soluble lytic 95.2 0.21 7.1E-06 39.7 10.2 121 32-153 221-347 (618)
259 4gq2_M Nucleoporin NUP120; bet 94.2 2.1 7.2E-05 36.0 14.1 94 63-160 816-933 (950)
260 2wpv_A GET4, UPF0363 protein Y 93.6 1.5 5E-05 31.7 11.4 114 36-149 24-158 (312)
261 4b4t_S RPN3, 26S proteasome re 93.5 0.2 6.7E-06 38.8 6.3 71 52-124 226-303 (523)
262 1qsa_A Protein (soluble lytic 93.1 0.82 2.8E-05 36.4 9.4 122 63-185 220-345 (618)
263 3lpz_A GET4 (YOR164C homolog); 90.9 3.6 0.00012 30.0 11.6 94 55-148 53-159 (336)
264 1wy6_A Hypothetical protein ST 89.9 2.5 8.5E-05 26.7 7.4 81 70-155 74-155 (172)
265 3esl_A Checkpoint serine/threo 88.8 3.9 0.00013 27.4 9.6 69 52-121 75-145 (202)
266 3t5v_B Nuclear mRNA export pro 88.5 1.9 6.6E-05 32.9 7.3 88 71-158 140-254 (455)
267 4gq2_M Nucleoporin NUP120; bet 88.4 2.5 8.5E-05 35.6 8.5 91 34-126 819-933 (950)
268 3ax2_A Mitochondrial import re 88.0 2.1 7.2E-05 23.5 5.3 25 64-88 24-48 (73)
269 3t5v_B Nuclear mRNA export pro 87.3 2.4 8.3E-05 32.3 7.2 64 61-124 180-254 (455)
270 3t5x_A PCI domain-containing p 86.8 2.3 8E-05 28.5 6.2 79 91-177 14-97 (203)
271 3t5x_A PCI domain-containing p 85.4 3.1 0.00011 27.9 6.3 56 53-108 10-70 (203)
272 2cfu_A SDSA1; SDS-hydrolase, l 84.7 3.3 0.00011 33.3 7.1 52 127-178 451-502 (658)
273 2ijq_A Hypothetical protein; s 83.1 7.1 0.00024 25.1 8.9 62 59-120 34-104 (161)
274 4aez_C MAD3, mitotic spindle c 83.1 6.5 0.00022 26.8 7.0 50 108-157 131-182 (223)
275 3ax2_A Mitochondrial import re 82.8 4.2 0.00014 22.3 5.9 31 130-160 22-52 (73)
276 3re2_A Predicted protein; meni 82.7 12 0.00043 27.6 8.6 27 91-117 296-322 (472)
277 1wy6_A Hypothetical protein ST 82.2 7.3 0.00025 24.6 7.5 55 66-120 100-154 (172)
278 2crb_A Nuclear receptor bindin 82.2 3.5 0.00012 23.7 4.6 28 91-118 15-42 (97)
279 2crb_A Nuclear receptor bindin 82.1 2.9 0.0001 24.0 4.2 30 56-85 14-43 (97)
280 1om2_A Protein (mitochondrial 82.0 3.4 0.00012 24.0 4.6 28 96-123 25-52 (95)
281 3mv2_A Coatomer subunit alpha; 81.3 3.9 0.00013 29.6 5.7 103 59-161 116-243 (325)
282 4a1g_A Mitotic checkpoint seri 80.5 8.8 0.0003 24.4 8.1 47 110-156 84-132 (152)
283 1om2_A Protein (mitochondrial 78.7 3.5 0.00012 23.9 3.9 33 61-93 24-56 (95)
284 2ijq_A Hypothetical protein; s 77.8 11 0.00039 24.2 8.2 61 94-154 35-104 (161)
285 2dl1_A Spartin; SPG20, MIT, st 77.1 8.5 0.00029 23.2 5.3 18 161-178 80-97 (116)
286 3u84_A Menin; MLL, JUND, ledgf 76.7 22 0.00076 26.9 8.5 60 110-169 298-368 (550)
287 3lvg_A Clathrin heavy chain 1; 76.6 0.022 7.6E-07 43.8 -7.2 129 29-172 148-276 (624)
288 2cfu_A SDSA1; SDS-hydrolase, l 76.4 6.2 0.00021 31.7 6.1 50 92-141 450-499 (658)
289 3esl_A Checkpoint serine/threo 75.8 15 0.00052 24.6 7.6 79 78-157 58-147 (202)
290 2wvi_A Mitotic checkpoint seri 73.3 16 0.00054 23.6 9.7 34 88-121 93-126 (164)
291 2rpa_A Katanin P60 ATPase-cont 72.8 5.2 0.00018 22.2 3.5 27 128-154 15-41 (78)
292 2w2u_A Hypothetical P60 katani 72.1 7.9 0.00027 21.7 4.2 15 104-118 32-46 (83)
293 2rpa_A Katanin P60 ATPase-cont 71.5 5.3 0.00018 22.2 3.3 27 94-120 15-41 (78)
294 4gq4_A Menin; tumor suppressor 70.2 33 0.0011 26.0 9.3 59 110-168 283-352 (489)
295 2v6y_A AAA family ATPase, P60 67.9 11 0.00037 21.1 4.2 17 103-119 23-39 (83)
296 4a5x_A MITD1, MIT domain-conta 67.8 12 0.0004 21.2 4.3 22 63-84 22-43 (86)
297 3u84_A Menin; MLL, JUND, ledgf 67.7 20 0.0007 27.1 6.5 45 76-120 298-347 (550)
298 2wpv_A GET4, UPF0363 protein Y 67.1 33 0.0011 24.8 11.3 111 59-183 35-158 (312)
299 2w2u_A Hypothetical P60 katani 66.3 11 0.00037 21.2 4.0 23 131-153 25-47 (83)
300 2ynq_A ESSB; membrane protein, 65.9 11 0.00038 24.1 4.3 81 32-117 15-99 (161)
301 4gq4_A Menin; tumor suppressor 65.8 24 0.00082 26.7 6.6 45 76-120 283-332 (489)
302 3myv_A SUSD superfamily protei 61.9 23 0.00078 26.9 6.3 29 91-119 190-218 (454)
303 3lvg_A Clathrin heavy chain 1; 61.0 2.5 8.4E-05 33.0 0.8 160 30-197 175-342 (624)
304 3mcx_A SUSD superfamily protei 60.6 36 0.0012 26.0 7.2 46 74-119 177-230 (477)
305 2v6x_A Vacuolar protein sortin 60.4 18 0.00061 20.2 4.2 16 104-119 26-41 (85)
306 1wfd_A Hypothetical protein 15 58.5 20 0.00067 20.6 4.2 15 104-118 28-42 (93)
307 3kez_A Putative sugar binding 58.1 33 0.0011 26.1 6.6 29 91-119 196-224 (461)
308 3lpz_A GET4 (YOR164C homolog); 57.2 54 0.0018 24.0 13.7 41 143-183 120-160 (336)
309 2npu_A FKBP12-rapamycin comple 56.4 32 0.0011 21.1 6.3 18 64-81 47-64 (126)
310 3lew_A SUSD-like carbohydrate 56.2 40 0.0014 26.0 6.8 28 92-119 204-231 (495)
311 3lew_A SUSD-like carbohydrate 55.4 37 0.0013 26.1 6.5 31 124-154 202-232 (495)
312 2yhe_A SEC-alkyl sulfatase; hy 60.0 2.5 8.7E-05 34.0 0.0 51 128-178 464-514 (668)
313 3myv_A SUSD superfamily protei 54.5 38 0.0013 25.7 6.4 47 107-153 164-218 (454)
314 2npm_A 14-3-3 domain containin 54.5 53 0.0018 23.0 7.0 15 138-152 211-225 (260)
315 2ynq_A ESSB; membrane protein, 54.2 40 0.0014 21.6 7.6 82 61-150 12-98 (161)
316 2cpt_A SKD1 protein, vacuolar 54.1 22 0.00074 21.5 4.0 17 103-119 30-46 (117)
317 2br9_A 14-3-3E, 14-3-3 protein 53.5 52 0.0018 22.6 6.9 15 138-152 186-200 (234)
318 2vkj_A TM1634; membrane protei 53.1 30 0.001 19.7 6.1 32 55-86 51-82 (106)
319 3kez_A Putative sugar binding 52.9 41 0.0014 25.6 6.3 47 108-154 171-225 (461)
320 3mcx_A SUSD superfamily protei 52.5 47 0.0016 25.4 6.6 48 107-154 176-231 (477)
321 3bqo_A Telomeric repeat-bindin 50.7 13 0.00044 24.9 2.8 34 65-98 125-158 (211)
322 2o8p_A 14-3-3 domain containin 50.1 58 0.002 22.2 9.6 51 104-154 138-197 (227)
323 4ady_A RPN2, 26S proteasome re 49.7 1.2E+02 0.0042 25.8 10.9 92 58-152 491-587 (963)
324 2cwy_A Hypothetical protein TT 49.4 35 0.0012 19.5 6.8 56 96-153 6-67 (94)
325 2br9_A 14-3-3E, 14-3-3 protein 47.5 62 0.0021 22.2 5.9 22 30-51 10-31 (234)
326 4b4t_O 26S proteasome regulato 47.0 86 0.0029 23.3 11.2 89 65-153 84-197 (393)
327 3bqo_A Telomeric repeat-bindin 46.5 24 0.00081 23.6 3.5 42 98-139 124-165 (211)
328 2e2a_A Protein (enzyme IIA); h 46.2 44 0.0015 19.7 4.4 33 52-84 15-47 (105)
329 2yhe_A SEC-alkyl sulfatase; hy 51.9 4.3 0.00015 32.7 0.0 51 93-143 463-513 (668)
330 1o9d_A 14-3-3-like protein C; 44.9 77 0.0026 22.2 6.9 15 104-118 191-205 (260)
331 1wcr_A PTS system, N, N'-diace 44.4 47 0.0016 19.5 4.4 31 53-83 14-44 (103)
332 4aez_C MAD3, mitotic spindle c 44.3 73 0.0025 21.7 9.4 32 90-121 149-180 (223)
333 3bu8_A Telomeric repeat-bindin 44.2 73 0.0025 21.7 8.9 68 73-140 88-163 (235)
334 3qnk_A Putative lipoprotein; a 43.8 83 0.0028 24.3 6.9 26 93-118 184-209 (517)
335 4abx_A DNA repair protein RECN 42.9 51 0.0017 21.3 4.8 49 109-157 74-122 (175)
336 3ubw_A 14-3-3E, 14-3-3 protein 42.9 84 0.0029 22.0 6.7 46 105-152 177-226 (261)
337 3uzd_A 14-3-3 protein gamma; s 41.9 85 0.0029 21.8 6.9 10 138-147 187-196 (248)
338 3hdx_A SUSD homolog, SUSD supe 41.0 78 0.0027 24.2 6.3 30 91-120 197-226 (478)
339 3jq1_A SUSD superfamily protei 40.7 67 0.0023 24.6 5.9 46 74-119 155-208 (481)
340 1o9d_A 14-3-3-like protein C; 40.5 90 0.0031 21.9 5.9 46 108-153 152-206 (260)
341 3k1s_A PTS system, cellobiose- 39.8 59 0.002 19.3 4.4 31 53-83 18-48 (109)
342 3hdx_A SUSD homolog, SUSD supe 37.9 97 0.0033 23.6 6.4 30 125-154 197-226 (478)
343 3ubw_A 14-3-3E, 14-3-3 protein 37.9 1E+02 0.0035 21.6 5.9 22 30-51 36-57 (261)
344 3l8r_A PTCA, putative PTS syst 37.2 69 0.0024 19.4 4.4 33 52-84 32-64 (120)
345 3re2_A Predicted protein; meni 36.8 1.3E+02 0.0045 22.5 12.8 95 61-170 239-347 (472)
346 3qnk_A Putative lipoprotein; a 36.6 1E+02 0.0036 23.8 6.4 31 124-154 181-211 (517)
347 4a1g_A Mitotic checkpoint seri 36.5 81 0.0028 20.0 8.6 66 52-123 66-133 (152)
348 3uzd_A 14-3-3 protein gamma; s 36.4 1.1E+02 0.0036 21.3 5.9 20 30-49 9-28 (248)
349 2yin_A DOCK2, dedicator of cyt 36.3 1.2E+02 0.0043 22.9 6.6 29 56-84 34-62 (436)
350 2o8p_A 14-3-3 domain containin 35.9 1E+02 0.0035 21.0 6.4 61 60-120 123-197 (227)
351 3jq1_A SUSD superfamily protei 35.0 64 0.0022 24.7 4.9 47 107-153 154-208 (481)
352 3efz_A 14-3-3 protein; 14-3-3, 34.7 1.1E+02 0.0039 21.4 5.6 51 104-154 172-226 (268)
353 3snx_A SUSD homolog, putative 33.2 62 0.0021 24.6 4.6 29 91-119 191-219 (460)
354 1ixm_A SPO0B, protein (sporula 32.1 1.1E+02 0.0037 20.2 5.1 45 78-122 19-63 (192)
355 2uwj_G Type III export protein 31.2 84 0.0029 18.6 8.4 72 71-148 20-91 (115)
356 3iqu_A 14-3-3 protein sigma; s 31.2 1.3E+02 0.0044 20.7 5.8 47 107-153 149-204 (236)
357 1bpo_A Protein (clathrin); cla 31.0 1.9E+02 0.0063 22.5 7.2 19 62-80 366-384 (494)
358 4ady_A RPN2, 26S proteasome re 30.5 2.6E+02 0.0088 24.0 9.9 95 58-153 456-552 (963)
359 2npm_A 14-3-3 domain containin 30.0 1.4E+02 0.0049 20.9 5.9 22 30-51 33-54 (260)
360 3i4g_A SUSD-like carbohydrate 29.8 1.5E+02 0.0053 23.0 6.4 28 126-153 199-226 (528)
361 3i4g_A SUSD-like carbohydrate 29.5 1.5E+02 0.005 23.1 6.2 25 158-182 197-221 (528)
362 2p58_C Putative type III secre 29.4 91 0.0031 18.4 9.5 72 71-148 21-92 (116)
363 3snx_A SUSD homolog, putative 29.4 66 0.0022 24.5 4.2 33 123-155 189-221 (460)
364 3qtm_A Uncharacterized protein 27.4 1.6E+02 0.0054 21.0 5.3 52 73-124 101-176 (346)
365 3s6n_M SurviVal motor neuron p 27.2 53 0.0018 14.9 2.0 14 141-154 18-31 (37)
366 2pm7_A Protein WEB1, protein t 27.1 2E+02 0.0068 21.6 9.6 132 39-174 227-382 (399)
367 4b4t_O 26S proteasome regulato 25.8 2E+02 0.007 21.3 8.4 86 98-183 83-193 (393)
368 2yin_A DOCK2, dedicator of cyt 24.7 2.3E+02 0.0079 21.5 7.6 25 131-155 98-122 (436)
369 3l22_A SUSD superfamily protei 24.2 67 0.0023 24.2 3.4 17 159-175 328-344 (441)
370 4gh9_A Polymerase cofactor VP3 23.7 70 0.0024 19.4 2.6 50 105-154 21-75 (146)
371 3fap_B FRAP, FKBP12-rapamycin 23.3 1.1E+02 0.0039 17.5 5.4 22 99-120 18-39 (94)
372 3dza_A Uncharacterized putativ 23.2 1.4E+02 0.0048 19.8 4.2 53 31-83 114-176 (191)
373 2qx5_A Nucleoporin NIC96; mRNA 22.7 2.2E+02 0.0076 23.1 6.1 72 65-148 302-379 (661)
374 3jys_A SUSD superfamily protei 22.7 2.3E+02 0.0079 21.8 6.1 28 92-119 189-222 (499)
375 3eab_A Spastin; spastin, MIT, 22.7 72 0.0025 18.2 2.5 18 105-122 11-28 (89)
376 3mv2_A Coatomer subunit alpha; 22.0 2.3E+02 0.008 20.6 12.2 92 27-123 116-239 (325)
377 2xze_A STAM-binding protein; h 21.7 1.4E+02 0.0049 18.6 4.0 28 56-83 39-66 (146)
378 2ca5_A MXIH; transport protein 20.8 1.2E+02 0.0043 17.0 3.5 20 144-163 29-48 (85)
379 3otn_A SUSD superfamily protei 20.8 1.3E+02 0.0043 23.1 4.3 46 109-154 163-226 (482)
380 3ckc_A SUSD; TPR repeat, carbo 20.4 2.7E+02 0.0091 21.4 6.1 28 92-119 198-231 (527)
381 3bu8_A Telomeric repeat-bindin 20.3 2.1E+02 0.0073 19.5 11.8 71 107-177 88-166 (235)
No 1
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.95 E-value=1.6e-27 Score=156.19 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=132.8
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.+|.++...|++++|+..+.++ ..|..+..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4688999999999999999988 78889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES-FERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 599999999999999999988876654
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.95 E-value=1.3e-26 Score=156.47 Aligned_cols=161 Identities=19% Similarity=0.136 Sum_probs=154.8
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
.++|.++...|++++|+..|+++ .+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE 88 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC
Confidence 57899999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
++.|+..+.+++.++|+++.++..+|.++..+|++++|+..|+++++++|.++.++.++|.++..+|++++|...+..+.
T Consensus 89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred chh
Q 029105 187 ANR 189 (199)
Q Consensus 187 ~~~ 189 (199)
+..
T Consensus 169 ~~~ 171 (184)
T 3vtx_A 169 EKE 171 (184)
T ss_dssp HTT
T ss_pred hCC
Confidence 543
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.94 E-value=8.1e-27 Score=186.09 Aligned_cols=161 Identities=21% Similarity=0.214 Sum_probs=153.5
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
...++|.++...|++++|+..|+++ .+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3467899999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
|++++|++.|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++.+++.++..+|++++|...+..
T Consensus 91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred ccc
Q 029105 185 NDA 187 (199)
Q Consensus 185 ~~~ 187 (199)
..+
T Consensus 171 al~ 173 (723)
T 4gyw_A 171 LVS 173 (723)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.8e-26 Score=160.06 Aligned_cols=156 Identities=19% Similarity=0.099 Sum_probs=98.1
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc--
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL-- 104 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-- 104 (199)
..+|..+...|++++|+..|+++ .+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence 44566666666666666666655 55666666666666666666666666666666666666666666666666666
Q ss_pred ---------CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105 105 ---------GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 105 ---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 175 (199)
|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++ +++.++.++|.++...|++
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCH
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCH
Confidence 666666666666666666666666666666666666666666666666666 6666666666666666666
Q ss_pred hhhhhhcccc
Q 029105 176 KHLHLSGLSN 185 (199)
Q Consensus 176 ~~a~~~~~~~ 185 (199)
++|...+...
T Consensus 168 ~~A~~~~~~a 177 (217)
T 2pl2_A 168 DEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655544433
No 5
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.94 E-value=8.8e-26 Score=143.60 Aligned_cols=118 Identities=26% Similarity=0.407 Sum_probs=115.3
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+|+.+..+..+|..++..|+|++|+..|+++++++|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
|.++..+|++++|+..|+++++++|++..++..++.|+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998774
No 6
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=5.9e-26 Score=157.47 Aligned_cols=168 Identities=21% Similarity=0.213 Sum_probs=145.4
Q ss_pred cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc-----------ccHHHHHHHH
Q 029105 14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED-----------GKFREALGKW 80 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~~~A~~~~ 80 (199)
..+...|+.+ .....+|.++...|++++|+..+.++ ..|+++.++..+|.++... |++++|+..|
T Consensus 30 ~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 30 RALKENPQDP--EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp HHHTTSSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 3455556543 34467899999999999999999998 7899999999999999999 9999999999
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 81 EAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus 108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccc
Q 029105 161 ARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 161 ~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
++..++.++...|++++|...+..
T Consensus 187 ~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999998775543
No 7
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=2.3e-24 Score=150.19 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=141.5
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAK-QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
......|..++..|++++|+..|.++ ..| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 34467899999999999999999988 455 677888889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcccccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHh
Q 029105 103 ELGDAWNALKAATRATELEQSWA-------EAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARDDRQTALHLVK 173 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~ 173 (199)
.+|++++|+..+++++.++|+++ .++..+|.++...|++++|+..|+++++++|+ ++.++.++|.++...|
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 66999999999999999999999999999999 9999999999999999
Q ss_pred hh
Q 029105 174 RR 175 (199)
Q Consensus 174 ~~ 175 (199)
+.
T Consensus 168 ~~ 169 (228)
T 4i17_A 168 AD 169 (228)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=9.5e-25 Score=162.93 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=143.3
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhccc-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK-FREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
..+|.++...|++++|+..+.++ .+|.+..+++.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence 56789999999999999999998 889999999999999999997 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-Hhhhhhh
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL-VKRRKHL 178 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~a 178 (199)
++++|+..|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|.++|.++.. .|..++|
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 4544666
No 9
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.92 E-value=1.6e-23 Score=136.93 Aligned_cols=126 Identities=14% Similarity=0.038 Sum_probs=115.1
Q ss_pred hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105 34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (199)
++...+++-.+-..+.++ .+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|.++|.++...|++++|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence 334444444455556655 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105 112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (199)
..|++++.++|+++.+++++|.++..+|++++|+..|++++.+.|+.+
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999865
No 10
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=1.4e-23 Score=167.53 Aligned_cols=137 Identities=22% Similarity=0.242 Sum_probs=131.0
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
..|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|...+..+.+.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887766553
No 11
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.91 E-value=3.3e-23 Score=152.53 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=140.5
Q ss_pred hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHH
Q 029105 37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQ 99 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~ 99 (199)
..+++++|+..+..+ ..|..+.++..+|.+++..|++++|+..|++++.++|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 567788888888887 688899999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|+++++.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhccccc
Q 029105 180 LSGLSND 186 (199)
Q Consensus 180 ~~~~~~~ 186 (199)
...+..+
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 12
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.90 E-value=1.3e-22 Score=136.07 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=151.1
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999988 6677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|...+....
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766554
Q ss_pred ch
Q 029105 187 AN 188 (199)
Q Consensus 187 ~~ 188 (199)
+.
T Consensus 172 ~~ 173 (186)
T 3as5_A 172 EL 173 (186)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 13
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=9.2e-23 Score=142.79 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=85.5
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 34456666666666666666555 4455555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|...+
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666555444
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.90 E-value=1e-23 Score=138.01 Aligned_cols=122 Identities=12% Similarity=0.021 Sum_probs=113.1
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP 141 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 141 (199)
.+|.++...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+..|+++++++|+++.+|+.+|.++..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 142 DKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
++|+..|+++++++|+++.++.++|.++...|+++++...++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999999999999999999999999988776553
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.90 E-value=1.6e-22 Score=132.04 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=114.2
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+|.++.+++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 175 (199)
|.++..+|++++|+..|++++.++|+++........+...+...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999877655555555544443
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-22 Score=143.10 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=150.8
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhH-------HHHHHHHhhHHHhcccHHHHHHHHHHHHc-----------
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQL-------ALSFEAQGNNLAEDGKFREALGKWEAALN----------- 85 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----------- 85 (199)
.....+|.++...|++++|+..+.++ ..|.. +.++..+|.++...|++++|+..|++++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 118 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 44567899999999999999999988 34443 78999999999999999999999999999
Q ss_pred ---------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 86 ---------------LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 86 ---------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++
T Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 151 ALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 151 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
++..+|+++.++..+|.++...|++++|...+....+..
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999988776665544
No 17
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=2.5e-23 Score=159.70 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=102.1
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc---------ccHHHHHHHHHHHHccCCCcHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED---------GKFREALGKWEAALNLRPENAVLHEQK 97 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~~~~l 97 (199)
..+|.++...|++++|+..|.++ ..|+ ..++..+|.++... |++++|+..|+++++++|+++.++.++
T Consensus 141 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45566666666666666666665 4444 46666666666666 666666666666666666666666666
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 98 AQVLLEL--------GDAWNALKAATRATELEQ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 98 a~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
|.++... |++++|+..|++++.++| +++.+++++|.++..+|++++|+..|+++++++|+++.++..++
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6666666 666666666666666666 66666666676666667777777777766666666666666666
Q ss_pred HHHHHHhhhhhhhhhc
Q 029105 167 TALHLVKRRKHLHLSG 182 (199)
Q Consensus 167 ~~~~~~~~~~~a~~~~ 182 (199)
.++..+|++++|....
T Consensus 300 ~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 300 QLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666666666544
No 18
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=1.8e-22 Score=155.03 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=152.6
Q ss_pred hHhhhcchhhhhccch-hhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKN-DDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
...+.+|.++...|++ ++|+..|.++ .+|.++.++..+|.++...|++++|+.+|+++++++|+ ..++.++|.++.
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~ 181 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence 4447789999999999 9999999998 78889999999999999999999999999999999999 799999999999
Q ss_pred Hc---------CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc--------CChHHHHHHHHHHHhcCC---CcHHHH
Q 029105 103 EL---------GDAWNALKAATRATELEQSWAEAWITLGRAQLNF--------GEPDKAIESFERALAIKP---DSEEAR 162 (199)
Q Consensus 103 ~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~ 162 (199)
.. |++++|+..++++++++|+++.+|+.+|.++..+ |++++|+..|++++.++| .++.++
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 99 9999999999999999999999999999999999 999999999999999999 999999
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccc
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
.++|.++..+|++++|...+..+.+
T Consensus 262 ~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 262 LNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999887766554
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=3e-22 Score=149.47 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=139.1
Q ss_pred hhhhccchhhhhhccccc---------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 34 SGAELEKNDDNNEHQEPF---------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
.+.....|.+....+... ..|.++.++..+|.++...|++++|+..|++++.++|++..+|+++|.++..+
T Consensus 65 ~y~~~~~w~di~~~~~~~~~~~~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~ 144 (382)
T 2h6f_A 65 LYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL 144 (382)
T ss_dssp CGGGCGGGTTSCCCCCCCCSSCSSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ccccCcccccCCCCCCCCCcCcchhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 344444555554444331 78899999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 105 GD-AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 105 ~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
|+ +++|+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.++|++..+|.++|.++..+|++++|...+.
T Consensus 145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 97 99999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cccc
Q 029105 184 SNDA 187 (199)
Q Consensus 184 ~~~~ 187 (199)
.+.+
T Consensus 225 ~al~ 228 (382)
T 2h6f_A 225 QLLK 228 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 20
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.2e-22 Score=125.28 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=113.2
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
|..+..+..+|..++..|++++|+..|++++.++|+++.++.++|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Q 029105 134 AQLNFGEPDKAIESFERALAIK------PDSEEARDDRQTALHL 171 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 171 (199)
++..+|++++|+..|++++.++ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999998887754
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=3.4e-22 Score=139.92 Aligned_cols=161 Identities=19% Similarity=0.124 Sum_probs=151.6
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
....+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999999988 66778899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..++.++...|++++|...+..
T Consensus 139 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred ccc
Q 029105 185 NDA 187 (199)
Q Consensus 185 ~~~ 187 (199)
..+
T Consensus 219 ~~~ 221 (243)
T 2q7f_A 219 AID 221 (243)
T ss_dssp HHH
T ss_pred HHc
Confidence 544
No 22
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.89 E-value=1.4e-22 Score=139.49 Aligned_cols=160 Identities=14% Similarity=0.016 Sum_probs=136.2
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHH----------------HhhHHHhcccHHHHHHHHHHHHccCCC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEA----------------QGNNLAEDGKFREALGKWEAALNLRPE 89 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~l~~~~~ 89 (199)
....|..++..|++++|+..|.++ .+|+++.+++. +|.++...|++++|+..|+++++++|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999998 78999999999 999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE--PDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+.+++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999977764 45567777776543332 346777888
Q ss_pred HHHHHhhhhhhhhhcccccch
Q 029105 168 ALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~~ 188 (199)
++...|++++|...+..+.+.
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888899998888776655543
No 23
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.89 E-value=1.1e-21 Score=133.94 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=129.3
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH----------------H
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA----------------V 92 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----------------~ 92 (199)
.+......|+++++.+.+... ..+..+..+..+|..++..|++++|+..|++++.+.|.++ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 345566678889998888776 5667888999999999999999999999999999999887 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
++.++|.++...|++++|+.++++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccc
Q 029105 173 KRRKHLHLSGLSN 185 (199)
Q Consensus 173 ~~~~~a~~~~~~~ 185 (199)
++..++....+..
T Consensus 170 ~~~~~~~~~~~~~ 182 (198)
T 2fbn_A 170 KEARKKDKLTFGG 182 (198)
T ss_dssp HHHHC--------
T ss_pred HHHHHHHHHHHHH
Confidence 9998877544433
No 24
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=1.4e-22 Score=144.01 Aligned_cols=162 Identities=12% Similarity=-0.005 Sum_probs=144.6
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQK 97 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~l 97 (199)
...+..|..++..|++++|+..|.++ ..|.+ +.+++.+|.+++..|++++|+..|++++...|++ +.+++.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 44578899999999999999999988 45555 8999999999999999999999999999998854 6789999
Q ss_pred HHHHHH--------cCCHHHHHHHHHHHhhcccccHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 029105 98 AQVLLE--------LGDAWNALKAATRATELEQSWAEAW-----------------ITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 98 a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
|.++.. .|++++|+..|++++..+|+++.+. +.+|.+|...|++++|+..|++++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999 9999999999999999999876655 889999999999999999999999
Q ss_pred hcCCC---cHHHHHHHHHHHHHH----------hhhhhhhhhcccccc
Q 029105 153 AIKPD---SEEARDDRQTALHLV----------KRRKHLHLSGLSNDA 187 (199)
Q Consensus 153 ~~~p~---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~ 187 (199)
...|+ .+.++..+|.++..+ |++++|...+....+
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 99998 567999999999988 888888776655443
No 25
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.89 E-value=8.3e-22 Score=127.68 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=117.1
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+|.+...++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
|.++..+|++++|+..|++++.++|+++........+...++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988777666666666555443
No 26
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.89 E-value=3.9e-22 Score=152.40 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=136.1
Q ss_pred hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------------HHHHHHHHH
Q 029105 37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------------AVLHEQKAQ 99 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~ 99 (199)
..+++++|+..+... ..|..+..+..+|.+++..|++++|+..|++++.++|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 556778888888777 678889999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
|+..+|++++|+..|++++.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcccccc
Q 029105 180 LSGLSNDA 187 (199)
Q Consensus 180 ~~~~~~~~ 187 (199)
...++.+.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 76555443
No 27
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=3.2e-22 Score=149.54 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=101.6
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 34455555555555555555555 4555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
+++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|...+...
T Consensus 287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666554433
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=3.6e-22 Score=148.06 Aligned_cols=158 Identities=18% Similarity=0.096 Sum_probs=120.3
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
...+|..+...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 456788888888888888888887 567778888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhhcccc----------------------------------------------cHHHHHHHHHHHHhcC
Q 029105 106 DAWNALKAATRATELEQS----------------------------------------------WAEAWITLGRAQLNFG 139 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~----------------------------------------------~~~~~~~lg~~~~~~~ 139 (199)
++++|+..+++++.++|+ ++.++..+|.++...|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 877777777777666554 4566667777777777
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++++|+..|++++..+|+++.++..+|.++...|++++|...+...
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777766655443
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=6.8e-22 Score=136.63 Aligned_cols=158 Identities=12% Similarity=0.035 Sum_probs=130.7
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc-C
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL-G 105 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~ 105 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++... |
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence 45678888888888888888877 56667778888888888888888888888888888888888888888888888 8
Q ss_pred CHHHHHHHHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 106 DAWNALKAATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 106 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
++++|+..+++++. .+|.++.++..+|.++...|++++|+..+++++...|.++.++..++.++...|++++|...+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888 6667778888888888888888888888888888888888888888888888888888776554
Q ss_pred ccc
Q 029105 184 SND 186 (199)
Q Consensus 184 ~~~ 186 (199)
...
T Consensus 172 ~~~ 174 (225)
T 2vq2_A 172 KYQ 174 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=8.9e-22 Score=138.72 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=139.2
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH
Confidence 56688888999999999998887 5677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 107 AWNALKAATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 107 ~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
+++|+..+++++. ..|.++.++..+|.++...|++++|+..|++++...|.++.++..++.++...|++++|...+..
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998 78888889999999999999999999999999999999999999999999999999888776554
Q ss_pred c
Q 029105 185 N 185 (199)
Q Consensus 185 ~ 185 (199)
.
T Consensus 201 ~ 201 (252)
T 2ho1_A 201 F 201 (252)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.88 E-value=2.3e-22 Score=134.93 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=142.1
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-Hc
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLL-EL 104 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~ 104 (199)
...+|..+...|++++|+..|+++ .+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.+.. ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 356789999999999999999998 7899999999999999999999999999999999999 8877766665533 33
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS--EEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..++.++..+|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 445568999999999999999999999999999999999999999999999976 669999999999999999998877
Q ss_pred ccccch
Q 029105 183 LSNDAN 188 (199)
Q Consensus 183 ~~~~~~ 188 (199)
.+.+..
T Consensus 168 ~~al~~ 173 (176)
T 2r5s_A 168 RRQLYS 173 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 32
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=6.1e-22 Score=148.01 Aligned_cols=153 Identities=20% Similarity=0.141 Sum_probs=89.4
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.+|.++...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|++++.++|++..++..+|.++...|++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 4455555556666666655555 44555555666666666666666666666666666665555555555555555555
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
++|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|...+
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555443
No 33
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=3.9e-22 Score=138.91 Aligned_cols=145 Identities=16% Similarity=0.218 Sum_probs=136.3
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-------HHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-------VLHEQ 96 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-------~~~~~ 96 (199)
...+.+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|++++.++|+++ .++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 34466899999999999999999998 8899999999999999999999999999999999999998 66999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCCh---------------------------HHHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEP---------------------------DKAIES 147 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~---------------------------~~A~~~ 147 (199)
+|.++...|++++|+..|+++++++|+ ++.+++.+|.++...|+. ++|+..
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999999988 999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHH
Q 029105 148 FERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 148 ~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
|+++++++|+++.+...++.+..
T Consensus 203 ~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 203 LGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999888887653
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.1e-22 Score=149.28 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=131.3
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHH-----------------------
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAA----------------------- 83 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------------------- 83 (199)
..+|.++...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|+++
T Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence 45566666666666666666655 44555555666666555555555555555554
Q ss_pred ---------------------HccCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105 84 ---------------------LNLRPE--NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140 (199)
Q Consensus 84 ---------------------l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 140 (199)
+..+|. ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 445565 788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccchhh
Q 029105 141 PDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDANRF 190 (199)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 190 (199)
+++|+..|++++.++|+++.++..+|.++...|++++|...+..+.+...
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999987776665543
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=1.9e-21 Score=131.07 Aligned_cols=133 Identities=17% Similarity=0.238 Sum_probs=126.9
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+...++++.|+..+.+++..+|.+..++..+|.++..+|++++|...+....+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765544
No 36
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.88 E-value=2.5e-21 Score=133.31 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=115.5
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhh
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ----------------KAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~ 119 (199)
.+..+...|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999 99999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105 120 LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176 (199)
Q Consensus 120 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 176 (199)
++|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++...|+.+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999998877543
No 37
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.87 E-value=2.5e-21 Score=128.11 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=118.8
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL------------------RPENAVLHEQKAQVLLELGDAWNALKAATR 116 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 116 (199)
..+..+...|..++..|+|++|+..|.+++.+ +|.+..++.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35778999999999999999999999999999 777789999999999999999999999999
Q ss_pred HhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 117 ATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE-EARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 117 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++..+..+..++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~ 157 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYS 157 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC---
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 7788999999888887776554433
No 38
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.87 E-value=1.3e-21 Score=136.26 Aligned_cols=157 Identities=8% Similarity=-0.039 Sum_probs=139.8
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--c---hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--D---AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKA 98 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la 98 (199)
..+.+|..++..|++++|+..|.++ . .|....+++.+|.+++..|++++|+..|+++++.+|+++ .+++.+|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3467799999999999999999988 2 334568999999999999999999999999999999986 4789999
Q ss_pred HHHHH------------------cCCHHHHHHHHHHHhhcccccHHHH-----------------HHHHHHHHhcCChHH
Q 029105 99 QVLLE------------------LGDAWNALKAATRATELEQSWAEAW-----------------ITLGRAQLNFGEPDK 143 (199)
Q Consensus 99 ~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~~~~~~ 143 (199)
.++.. .|++++|+..|++++..+|+++.++ +.+|.++...|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99886 5789999999999999999876544 678999999999999
Q ss_pred HHHHHHHHHhcCCCcH---HHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 144 AIESFERALAIKPDSE---EARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 144 A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
|+..|+++++..|+++ .++..++.++..+|++++|.....
T Consensus 166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999986 679999999999999999887553
No 39
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=7.4e-22 Score=146.19 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=146.2
Q ss_pred hcchhhhhccchhhhhhccccc--chhh--HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQ--LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
.+|..+ ..|++++|+..+.++ ..|. .+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 345555 899999999999988 6666 78899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-----------HHHHHHHHHHHHHHhh
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS-----------EEARDDRQTALHLVKR 174 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~ 174 (199)
++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++.+.|++ ..++..++.++..+|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred hhhhhhhcccccc
Q 029105 175 RKHLHLSGLSNDA 187 (199)
Q Consensus 175 ~~~a~~~~~~~~~ 187 (199)
+++|........+
T Consensus 346 ~~~A~~~~~~~l~ 358 (368)
T 1fch_A 346 SDAYGAADARDLS 358 (368)
T ss_dssp GGGHHHHHTTCHH
T ss_pred hHhHHHhHHHHHH
Confidence 9999887665544
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.6e-22 Score=139.10 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=147.3
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKA 98 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la 98 (199)
...+|..+...|++++|+..|.++ .. .++.++..+|.++...|++++|+..+++++...|.+ +.++..+|
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 356799999999999999999988 33 678899999999999999999999999999998877 79999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--------------------------cccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 029105 99 QVLLELGDAWNALKAATRATE--------------------------LEQSWAEAWITLGRAQLNFGEPDKAIESFERAL 152 (199)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 152 (199)
.++...|++++|+..+++++. .+|.++.++..+|.++...|++++|+..|++++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999 788889999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 153 AIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 153 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
..+|.++.++..+|.++...|++++|...+....+
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999887655543
No 41
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=140.94 Aligned_cols=171 Identities=15% Similarity=0.033 Sum_probs=141.1
Q ss_pred ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
.+...|..+ .....+|.++...|++++|+..+.++ ..|....++..+|.++...|++++|+..+++++..+|.++.
T Consensus 117 a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 117 ATTLEKTYG--PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp HHTTCTTCT--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHhCCccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 334444433 33456788888888888888888877 55666777888888898999999999999999999998888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcc---------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELE---------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
++..+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+..|++++..+|+++.++.
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 274 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHH
Confidence 89999999999999999999999998876 666778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcccccc
Q 029105 164 DRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 164 ~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
.+|.++...|++++|...+....+
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999988877665544
No 42
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.87 E-value=5.8e-21 Score=126.56 Aligned_cols=124 Identities=18% Similarity=0.320 Sum_probs=113.2
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.+..+..++.+|.+++..|++++|+..|++++.++|+++.++.++|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHHHhhhh
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT--ALHLVKRRK 176 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~~ 176 (199)
.++..+|++++|+.+|++++.++|++..++...+. +...+++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886555554 444444443
No 43
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=5e-21 Score=141.75 Aligned_cols=169 Identities=17% Similarity=0.095 Sum_probs=123.5
Q ss_pred ccCCCCCC--chHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 17 QQFPNLPF--DQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 17 ~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
...|+.|. ......+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|++++..+|+++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 133 (368)
T 1fch_A 54 QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133 (368)
T ss_dssp CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH
Confidence 34444442 233456788888888998888888887 67777888888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccc-------------------------------------------------c
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQ-------------------------------------------------S 123 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------------------------------~ 123 (199)
++..+|.++...|++++|+..+++++..+| +
T Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 134 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence 777777777777777777666666555433 3
Q ss_pred --cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 124 --WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 124 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|...+...
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777766655443
No 44
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.87 E-value=1.7e-22 Score=132.06 Aligned_cols=120 Identities=7% Similarity=-0.195 Sum_probs=109.8
Q ss_pred hcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 69 EDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 69 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
..+++-.+-..+++++.++|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 33444445566788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 149 ERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 149 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
++++.++|+++.++.++|.++..+|++++|...+..+.+.
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999877666543
No 45
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.2e-21 Score=140.50 Aligned_cols=158 Identities=16% Similarity=-0.001 Sum_probs=134.5
Q ss_pred cchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
++.++...|++++|+..+.++ ..|.++.++..+|.++...| ++++|+..|++++..+|.++.++..+|.++...|++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 456667777777777777766 56777888888899999888 889999999999999998888899999999999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 108 WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
++|+..+++++...|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|...+.....
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999998888888888999999999999999999999999999999999999999999999888876665554
Q ss_pred h
Q 029105 188 N 188 (199)
Q Consensus 188 ~ 188 (199)
.
T Consensus 222 ~ 222 (330)
T 3hym_B 222 K 222 (330)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=4.5e-21 Score=135.11 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=149.8
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN--LRPENAVLHEQKAQVLL 102 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~ 102 (199)
....+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++. ..|.+..++..+|.++.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 3456799999999999999999988 6677889999999999999999999999999999 88999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|...+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cccc
Q 029105 183 LSND 186 (199)
Q Consensus 183 ~~~~ 186 (199)
....
T Consensus 233 ~~~~ 236 (252)
T 2ho1_A 233 LQLK 236 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=3.1e-21 Score=139.31 Aligned_cols=153 Identities=7% Similarity=-0.124 Sum_probs=136.5
Q ss_pred HhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH--HHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKA--QVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la--~~~~~~ 104 (199)
....+|.++...|++++|+..+.+ |.++.++..+|.++...|++++|+..+++++..+|++.......+ .++...
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc
Confidence 346779999999999999999988 778889999999999999999999999999999999865444333 333445
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++.+++.++...|+..++...+
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998754333
No 48
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.87 E-value=2.4e-20 Score=118.16 Aligned_cols=124 Identities=22% Similarity=0.352 Sum_probs=120.0
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
..|..+..+..+|.+++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 175 (199)
|.++...|++++|+..|++++..+|+++.++..++.++..+|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998875
No 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.5e-21 Score=141.62 Aligned_cols=161 Identities=18% Similarity=0.067 Sum_probs=127.1
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC---CcHHHHHHH----
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP---ENAVLHEQK---- 97 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~l---- 97 (199)
....+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|++++..+| ++..++..+
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH
Confidence 3356677888888888888887777 5666777788888888888888888888888888888 777777666
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 98 --------AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 98 --------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 119 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhhhhhhhhcccccc
Q 029105 170 HLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~ 187 (199)
...|++++|...+....+
T Consensus 199 ~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 888888887776554443
No 50
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.87 E-value=1.5e-20 Score=119.46 Aligned_cols=112 Identities=22% Similarity=0.255 Sum_probs=101.8
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-------HH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-------AE 126 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 126 (199)
++.+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999998875 35
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
++.++|.++..+|++++|+..|++++...|+ ++....+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 7899999999999999999999999999886 55444443
No 51
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.87 E-value=4.4e-21 Score=150.29 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=118.7
Q ss_pred ccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 029105 38 LEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAAT 115 (199)
Q Consensus 38 ~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (199)
.|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|+++++++|++..++.++|.++..+|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36788888888887 6778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---hhhhhhhhhcccccc
Q 029105 116 RATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV---KRRKHLHLSGLSNDA 187 (199)
Q Consensus 116 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 187 (199)
++++++|+++.+++.+|.++..+|++++|+..|+++++.+|+++.++.+++.++..+ |++++|...+....+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999 888888776654443
No 52
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.87 E-value=2.5e-22 Score=160.26 Aligned_cols=147 Identities=12% Similarity=-0.016 Sum_probs=135.2
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
....+|.++...|++++|+..+.++ .+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA 514 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3466789999999999999999988 78889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
|++++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++.+++.++...+.
T Consensus 515 g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999 9999999999999999999999999999999999999999999999999999999999877554
No 53
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=6.1e-21 Score=135.50 Aligned_cols=167 Identities=13% Similarity=0.034 Sum_probs=146.3
Q ss_pred cccccCCCCCCc-hHhhhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHh--------cccHHHHHHH
Q 029105 14 RSLQQFPNLPFD-QQDQEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAE--------DGKFREALGK 79 (199)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~ 79 (199)
.++...|+.+.. ...+.+|.+++..|++++|+..|.++ .+|..+.+++.+|.+++. .|++++|+..
T Consensus 40 ~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 40 AVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 466677776653 34478899999999999999999988 244678899999999999 9999999999
Q ss_pred HHHHHccCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHhc-
Q 029105 80 WEAALNLRPENAVLH-----------------EQKAQVLLELGDAWNALKAATRATELEQS---WAEAWITLGRAQLNF- 138 (199)
Q Consensus 80 ~~~~l~~~~~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~- 138 (199)
|++++..+|+++.+. +.+|.++...|++++|+..|++++...|+ .+.+++.+|.++..+
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 999999999986555 88899999999999999999999999998 678999999999977
Q ss_pred ---------CChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHhhhhhhhh
Q 029105 139 ---------GEPDKAIESFERALAIKPDSE---EARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 139 ---------~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~ 180 (199)
|++++|+..|++++...|+++ .+...++.++..+++++++..
T Consensus 200 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 200 EQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 899999999999999999985 567788888888888877543
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=5e-21 Score=139.32 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=148.5
Q ss_pred hhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105 34 SGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (199)
++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 588899999999999988 667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHhhhhhhh
Q 029105 112 KAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD------------SEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
..+++++..+|+++.++..+|.++...|++++|+..|++++...|. ++.++..++.++..+|++++|.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhcccccchhhh
Q 029105 180 LSGLSNDANRFV 191 (199)
Q Consensus 180 ~~~~~~~~~~~~ 191 (199)
.......+....
T Consensus 307 ~~~~~~l~~~~~ 318 (327)
T 3cv0_A 307 LTYAQNVEPFAK 318 (327)
T ss_dssp HHTTCCSHHHHH
T ss_pred HHHHHHHHhcch
Confidence 887766655433
No 55
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.86 E-value=1.2e-21 Score=141.27 Aligned_cols=159 Identities=10% Similarity=-0.063 Sum_probs=145.5
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..|+++ .+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+...++
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 56788889999999999999988 7888899999999999999999999999999999999877777888888888999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS--EEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++..+|+.++|...+.+
T Consensus 201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 88999999999999999998887765
Q ss_pred ccc
Q 029105 185 NDA 187 (199)
Q Consensus 185 ~~~ 187 (199)
++.
T Consensus 281 al~ 283 (287)
T 3qou_A 281 QLY 283 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 56
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=119.55 Aligned_cols=123 Identities=22% Similarity=0.329 Sum_probs=118.0
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
..|..+.+++.+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
|.++...|++++|+..|++++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987763
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=1.1e-21 Score=156.54 Aligned_cols=151 Identities=13% Similarity=-0.069 Sum_probs=142.5
Q ss_pred hhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 36 AELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
...|++++|+..+.++ .+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 6788999999888765 358888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|+++.++.++|.++..+|++++|...+..+
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999998877665
Q ss_pred cc
Q 029105 186 DA 187 (199)
Q Consensus 186 ~~ 187 (199)
.+
T Consensus 561 l~ 562 (681)
T 2pzi_A 561 PP 562 (681)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1e-20 Score=139.09 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=149.0
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..++..|++++|+..|.++ ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 56789999999999999999988 7788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc---ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 107 AWNALKAATRATELEQ---SWAEAWITL------------GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p---~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
+++|+..+++++..+| +++.++..+ |.++...|++++|+..+++++..+|.++.++..++.++..
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999 888888877 7899999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhcccccc
Q 029105 172 VKRRKHLHLSGLSNDA 187 (199)
Q Consensus 172 ~~~~~~a~~~~~~~~~ 187 (199)
.|++++|...+....+
T Consensus 167 ~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 167 EGEPRKAISDLKAASK 182 (359)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999876655443
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=1.6e-21 Score=138.85 Aligned_cols=174 Identities=18% Similarity=0.092 Sum_probs=147.3
Q ss_pred cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc-chh---h-HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC
Q 029105 14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF-DAK---Q-LALSFEAQGNNLAEDGKFREALGKWEAALNLRP 88 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 88 (199)
..+...|+.+. ....+|.++...|++++|+..+.++ ..| . .+.++..+|.++...|++++|+..|++++..+|
T Consensus 28 ~~l~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 28 KLEAKKYNSPY--IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp HHHHTTCCCST--THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhCCCcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 34555665443 3456788999999999999998887 222 2 255689999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|......+++++|+..|+++++.+|++..++..++.+
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARA 185 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999444445699999999999999999999999999999
Q ss_pred HHHHhh---hhhhhhhcccccchh
Q 029105 169 LHLVKR---RKHLHLSGLSNDANR 189 (199)
Q Consensus 169 ~~~~~~---~~~a~~~~~~~~~~~ 189 (199)
+..+++ +++|...+....+..
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHH
Confidence 999998 777887766665543
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=2.4e-20 Score=132.76 Aligned_cols=154 Identities=15% Similarity=0.028 Sum_probs=138.1
Q ss_pred cchhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 31 HGLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
++......|++++|+..+.++ ..|..+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 455566678999999998877 25788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLS 184 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 184 (199)
|++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++.++|++......++.+ ...|++++|...+..
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ 169 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776666644 666888888776543
Q ss_pred c
Q 029105 185 N 185 (199)
Q Consensus 185 ~ 185 (199)
.
T Consensus 170 ~ 170 (275)
T 1xnf_A 170 H 170 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=4.6e-21 Score=136.45 Aligned_cols=158 Identities=12% Similarity=0.022 Sum_probs=141.7
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc----HHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN----AVLHEQKAQVLL 102 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~ 102 (199)
...|..++..|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|.++.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 56789999999999999999998 7788888999999999999999999999999999 4444 345899999999
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|......+++++|...+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999994444455888887765
Q ss_pred ccccc
Q 029105 183 LSNDA 187 (199)
Q Consensus 183 ~~~~~ 187 (199)
....+
T Consensus 166 ~~a~~ 170 (272)
T 3u4t_A 166 VKVLE 170 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=2.5e-20 Score=128.74 Aligned_cols=157 Identities=13% Similarity=-0.013 Sum_probs=145.5
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHc--cCCCcHHHHHHHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAED-GKFREALGKWEAALN--LRPENAVLHEQKAQVL 101 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~ 101 (199)
....+|.++...|++++|+..+.++ ..|.++.++..+|.++... |++++|+..+++++. ..|.+..++..+|.++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 3456799999999999999999988 6677888999999999999 999999999999999 6777789999999999
Q ss_pred HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 102 LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP-DSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 102 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...| .++..+..++.++...|+.+++..
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999888765
Q ss_pred hcc
Q 029105 181 SGL 183 (199)
Q Consensus 181 ~~~ 183 (199)
...
T Consensus 204 ~~~ 206 (225)
T 2vq2_A 204 YEA 206 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.85 E-value=4.8e-21 Score=124.34 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=107.8
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhc---
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NA-----VLHEQKAQVLLELGDAWNALKAATRATEL--- 120 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 120 (199)
.+..+..+|..++..|+|++|+..|+++++++|+ +. .+|.++|.++..+|+|++|+.++++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5677899999999999999999999999999999 43 39999999999999999999999999999
Q ss_pred ----ccccHHHH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 121 ----EQSWAEAW----ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 121 ----~p~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++......+..+.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999998777666666655443
No 64
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.85 E-value=1.8e-19 Score=119.01 Aligned_cols=131 Identities=20% Similarity=0.294 Sum_probs=121.3
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHhhhhhhhhhcccc
Q 029105 135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTA--LHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~ 185 (199)
+..+|++++|+.+|++++..+|.+..++..++.+ +...|++++|.......
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999999999999988555555 88889999988765433
No 65
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.85 E-value=4.6e-21 Score=121.72 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=104.2
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
...++|..++..|+|++|+..|.++ .+|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3457899999999999999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
|++++|+..|+++++++|+++.++..++.|+
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999998874
No 66
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=2.2e-20 Score=134.96 Aligned_cols=157 Identities=8% Similarity=-0.037 Sum_probs=137.7
Q ss_pred cchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQ 96 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~ 96 (199)
.|.++...|++++|+..|.++ ..+..+.++..+|.++...|++++|+.+|++++.+.|.. ..++.+
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 377888899999999999887 123457899999999999999999999999999987653 468999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH-------HH
Q 029105 97 KAQVLLEL-GDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE-------AR 162 (199)
Q Consensus 97 la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~ 162 (199)
+|.++... |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+..|++++.+.|++.. ++
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999996 99999999999999998864 567899999999999999999999999999987643 67
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccc
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
.++|.++..+|++++|...+....+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999887766554
No 67
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.85 E-value=3.2e-20 Score=119.08 Aligned_cols=125 Identities=25% Similarity=0.288 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.|..+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHhhhhh
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPD-----SEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~ 177 (199)
.++..+|++++|+..|++++.++|+ +..+...+..+........+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 77888888887776655544
No 68
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.85 E-value=3.5e-20 Score=127.47 Aligned_cols=137 Identities=15% Similarity=0.022 Sum_probs=124.9
Q ss_pred hhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.+.+|..+...|++++|+..|.++..| ++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 367799999999999999999998654 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 108 WNALKAATRATELEQSWA----------------EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
++|+..+++++...|.+. .+++.+|.++..+|++++|+..|++++.++|++.......
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 999999999999766554 9999999999999999999999999999999875543333
No 69
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=2.6e-20 Score=141.42 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=133.7
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 56688889999999999998887 5677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 107 AWNALKAATRATELEQSWA---EAWITL------------GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~---~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
+++|+..|++++..+|+++ .++..+ |.++...|++++|+..|++++...|.++.++..++.++..
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999888877 665544 6668888888888888888888888888888888888888
Q ss_pred Hhhhhhhhhhccccc
Q 029105 172 VKRRKHLHLSGLSND 186 (199)
Q Consensus 172 ~~~~~~a~~~~~~~~ 186 (199)
.|++++|...+....
T Consensus 190 ~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 190 EGEPRKAISDLKAAS 204 (450)
T ss_dssp TTCGGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888776655443
No 70
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.84 E-value=1.9e-20 Score=125.42 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=120.2
Q ss_pred chhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH-HHHcCCH-
Q 029105 32 GLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV-LLELGDA- 107 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~~~~- 107 (199)
+..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34466788999999999887 6788899999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 108 -WNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 108 -~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++......+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998665544433
No 71
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=4.5e-20 Score=140.10 Aligned_cols=160 Identities=14% Similarity=0.056 Sum_probs=142.6
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHH--------
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQK-------- 97 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l-------- 97 (199)
...+|.++...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|++++..+|++..++..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 456788999999999999999888 6777888999999999999999999999999999999998877666
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHhhcccccHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 98 ----AQVLLELGDAWNALKAATRATELEQSWAE----AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 98 ----a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
|.++...|++++|+..|++++...|+++. .+..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 99999999999999999999999998754 7888999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhcccccc
Q 029105 170 HLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 170 ~~~~~~~~a~~~~~~~~~ 187 (199)
...|++++|...+....+
T Consensus 340 ~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 999999998877665544
No 72
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=5.8e-19 Score=109.77 Aligned_cols=114 Identities=18% Similarity=0.322 Sum_probs=110.0
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
.+..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
...|++++|+..+++++..+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999888775
No 73
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=3.6e-20 Score=143.48 Aligned_cols=161 Identities=15% Similarity=-0.008 Sum_probs=151.0
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
...+|..+...|++++|+..+.++ ..|. +.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence 356688999999999999999988 5666 8899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|...+...
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred cchh
Q 029105 186 DANR 189 (199)
Q Consensus 186 ~~~~ 189 (199)
.+..
T Consensus 405 ~~~~ 408 (537)
T 3fp2_A 405 KRLE 408 (537)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 5543
No 74
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.83 E-value=6.9e-20 Score=115.45 Aligned_cols=102 Identities=19% Similarity=0.118 Sum_probs=92.8
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
.++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..++++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCcHH
Q 029105 139 GEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~~~~ 160 (199)
|++++|+..|+++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999998754
No 75
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=1.3e-19 Score=128.91 Aligned_cols=157 Identities=13% Similarity=-0.009 Sum_probs=124.2
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|.++...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|+
T Consensus 47 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 47 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence 57799999999999999999998 6788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----------------------------
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS---------------------------- 158 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------------------- 158 (199)
+++|+..+++++.++|+++......+.+ ...|++++|+..+++++...|.+
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 9999999999999999876544433332 33455555555555544443322
Q ss_pred ---------HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 159 ---------EEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 159 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+.++..+|.++...|++++|...+....
T Consensus 206 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667777777777777666554433
No 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=2.6e-20 Score=135.51 Aligned_cols=160 Identities=21% Similarity=0.168 Sum_probs=130.4
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHH---------------------------
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGK--------------------------- 79 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------------------------- 79 (199)
..+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..
T Consensus 59 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 45577777777777777777766 4555666666666666666655555554
Q ss_pred ----------------------HHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 80 ----------------------WEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 80 ----------------------~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
+++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4445555677778889999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 138 FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.|++++|+..|++++..+|+++.++..++.++...|++++|...+......
T Consensus 219 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998776555443
No 77
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.83 E-value=3.2e-19 Score=132.82 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=123.5
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc----------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALN----------------LRPENAVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
...+..+..+|..++..|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+++++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34567899999999999999999999999998 78888899999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++....++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~k 367 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAK 367 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988766544
No 78
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.83 E-value=7.5e-19 Score=110.29 Aligned_cols=118 Identities=31% Similarity=0.441 Sum_probs=113.2
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
.+.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
...|++++|+..|++++..+|.++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887654
No 79
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.1e-19 Score=142.61 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=95.0
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.+|..+...|++++|+..|.++ ..|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 3455555555555555555554 44445555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhc------cccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 029105 108 WNALKAATRATEL------EQSW-AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 108 ~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 180 (199)
++|+..|++++.. +|++ ..++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|..
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 6666666666655 3432 55666666666666666666666666666666666666666666666666666655
Q ss_pred hcccc
Q 029105 181 SGLSN 185 (199)
Q Consensus 181 ~~~~~ 185 (199)
.+...
T Consensus 572 ~~~~~ 576 (597)
T 2xpi_A 572 HLHES 576 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.82 E-value=2.7e-20 Score=121.44 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=106.5
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
.+...|++++.++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.+
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 155 KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 155 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
+|+++.++.++|.++..+|++++|...+..+.+.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877666543
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=9e-20 Score=129.89 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=142.8
Q ss_pred hhhcchhhhhccchhhhhhccccc--c--------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--D--------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPE 89 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~ 89 (199)
...+|.++...|++++|+..+.++ . .|..+.++..+|.++...|++++|+..|++++.. +|.
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 357799999999999999999887 1 4778899999999999999999999999999988 467
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI------- 154 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------- 154 (199)
...++..+|.++...|++++|+.++++++.+ +|....++..+|.++..+|++++|+..+++++.+
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999998 7888899999999999999999999999999986
Q ss_pred ------------------------------------------CCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 155 ------------------------------------------KPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 155 ------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
.|....++..+|.++...|++++|...+..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 24456789999999999999999988665543
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.82 E-value=7.2e-19 Score=111.70 Aligned_cols=128 Identities=27% Similarity=0.328 Sum_probs=110.6
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
.+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35777888888889999999999988888888888888889888888999999999999888888888888888999989
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 138 FGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 138 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
.|++++|+..+++++...|.++.++..++.++...|++++|...+...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999998888888888888888888888888887765444
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.82 E-value=1.2e-18 Score=110.23 Aligned_cols=122 Identities=23% Similarity=0.312 Sum_probs=113.7
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc-------HH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW-------AE 126 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 126 (199)
|..+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhh
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRK 176 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 176 (199)
+++.+|.++...|++++|+..|++++...| ++.....++.+...+++.+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 5888999998888776643
No 84
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.82 E-value=2e-19 Score=141.09 Aligned_cols=136 Identities=15% Similarity=0.023 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.|.++.++..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++...|+++.++..+|
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 35567788888889999999999999999998888888888899999999999999999999999988888888889999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.++...|++++|+..|++++...|.++.++..++.++...|++++|...+....+.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988888999999999999998888766555443
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=1.5e-19 Score=135.03 Aligned_cols=161 Identities=14% Similarity=0.017 Sum_probs=141.5
Q ss_pred hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NAVLH 94 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~ 94 (199)
..|..+...|++++|+..+.++ ..+..+.++..+|.++...|++++|+..+.+++.+.+. ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3789999999999999999887 24557899999999999999999999999999988443 34689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cC-CCcHHHH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALA-----IK-PDSEEAR 162 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~ 162 (199)
.++|.++...|++++|+..+++++.+.|.. ..++.++|.+|..+|++++|+.+|++++. .+ |..+.++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 999999999999999999999999886543 35899999999999999999999999999 56 8888999
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccchhh
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSNDANRF 190 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 190 (199)
.++|.++..+|++++|...+..+.+...
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987776665443
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.81 E-value=4e-19 Score=112.88 Aligned_cols=130 Identities=28% Similarity=0.354 Sum_probs=122.5
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 45688999999999999999887 5677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
+++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999998863
No 87
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.2e-19 Score=139.73 Aligned_cols=171 Identities=16% Similarity=0.057 Sum_probs=145.8
Q ss_pred ccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH
Q 029105 15 SLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV 92 (199)
Q Consensus 15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 92 (199)
.+...|+.+ .....+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++...|+++.
T Consensus 296 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 373 (514)
T 2gw1_A 296 ALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373 (514)
T ss_dssp HHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH
Confidence 344444433 23456788888999999999988887 66777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH------HHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAE------AWITLGRAQLN---FGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
++..+|.++...|++++|+..+++++...|+++. ++..+|.++.. .|++++|+..|++++..+|+++.++.
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 9999999999999999999999999999888755 89999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcccccc
Q 029105 164 DRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 164 ~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
.++.++...|++++|...+....+
T Consensus 454 ~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 454 GLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999998876655443
No 88
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-18 Score=112.18 Aligned_cols=118 Identities=24% Similarity=0.319 Sum_probs=111.8
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
..|..+..++.+|..++..|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 345678899999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
+.+|.++...|++++|+.+|++++.++|++..++..++.+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887764
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=3.5e-19 Score=126.83 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=132.2
Q ss_pred ccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCcHHHHHHHHH
Q 029105 38 LEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPENAVLHEQKAQ 99 (199)
Q Consensus 38 ~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~ 99 (199)
.|++++|+..|.++ ..|..+.++..+|.++...|++++|+..+++++.+ .|....++..+|.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555555555544 34788999999999999999999999999999987 3666789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCcHHHHH
Q 029105 100 VLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI--------KPDSEEARD 163 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~ 163 (199)
++...|++++|+..+++++.+ +|....++..+|.++...|++++|+..+++++.+ .|....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999988 5778889999999999999999999999999998 777788999
Q ss_pred HHHHHHHHHhhhhhhhhhcccccch
Q 029105 164 DRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 164 ~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.+|.++...|++++|...+....+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998877665543
No 90
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.80 E-value=1.9e-18 Score=109.59 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=105.8
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---HHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSW---AEAWITL 131 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 131 (199)
.+++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..+++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
|.++..+|++++|+..|++++...|+++.+......+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776666555433
No 91
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=139.51 Aligned_cols=159 Identities=15% Similarity=0.017 Sum_probs=149.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|.++...|++++|+..+.++ ..|. +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 56789999999999999999988 5666 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...+....
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776555
Q ss_pred ch
Q 029105 187 AN 188 (199)
Q Consensus 187 ~~ 188 (199)
..
T Consensus 400 ~~ 401 (514)
T 2gw1_A 400 EL 401 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 92
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.80 E-value=1.9e-18 Score=118.82 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=119.5
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
.....++.+|.+++..|++++|+..|++++ .| ++.++.++|.++...|++++|+..+++++.++|+++.+++.+|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 345678899999999999999999999985 33 688999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 135 QLNFGEPDKAIESFERALAIKPDSE----------------EARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
+..+|++++|+..|++++...|.+. .++.++|.++...|++++|...+..+.+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999999888766 99999999999999999998776555443
No 93
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.80 E-value=2.2e-19 Score=137.87 Aligned_cols=130 Identities=20% Similarity=0.290 Sum_probs=119.9
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
+..+..+..+|.+++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|+++.+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHhhhhhhhhhcc
Q 029105 134 AQLNFGEPDKAIESFERALAIKPDSEEARDDRQTA--LHLVKRRKHLHLSGL 183 (199)
Q Consensus 134 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 183 (199)
++..+|++++|+..|+++++++|++..++..++.+ +...|++++|...+.
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999998 888899999887655
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=1.9e-18 Score=115.70 Aligned_cols=132 Identities=13% Similarity=0.038 Sum_probs=125.1
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
.....+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 135 QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+...|++++|+..+++++...|.++.++..++.++...|++++|...+....
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887665443
No 95
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=1.6e-19 Score=139.84 Aligned_cols=156 Identities=17% Similarity=0.083 Sum_probs=82.3
Q ss_pred hcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 107 (199)
.+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 3344444444444444444444 33444444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhcccccHH------HHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 108 WNALKAATRATELEQSWAE------AWITLGRAQLNF----------GEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 108 ~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
++|+..+++++...|+++. .++.+|.++... |++++|+..|++++..+|+++.++..+|.++..
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5555555555544443322 133334455555 556666666666666666666677777777777
Q ss_pred Hhhhhhhhhhcccc
Q 029105 172 VKRRKHLHLSGLSN 185 (199)
Q Consensus 172 ~~~~~~a~~~~~~~ 185 (199)
.|++++|...+...
T Consensus 475 ~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 475 MEKIDEAIELFEDS 488 (537)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 77777666554433
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=6e-19 Score=127.44 Aligned_cols=160 Identities=16% Similarity=0.078 Sum_probs=143.2
Q ss_pred hhhcchhhhhccchhhhhhccccc--c--------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--D--------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PE 89 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~ 89 (199)
...+|.++...|++++|+..+.++ . .|....++..+|.++...|++++|+..+++++.+. |.
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 356799999999999999999887 1 47788899999999999999999999999999874 55
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI------- 154 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------- 154 (199)
...++..+|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+..+++++..
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 6788999999999999999999999999998 7888889999999999999999999999999974
Q ss_pred ------------------------------------------CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 155 ------------------------------------------KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 155 ------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
.|..+.++..+|.++...|++++|...+..+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466678899999999999999999887665544
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=8.5e-19 Score=126.58 Aligned_cols=156 Identities=12% Similarity=-0.033 Sum_probs=124.1
Q ss_pred hhhcchhhhhccchhhhhhccccc--c------hhhHHHHHHHHhhHHHhc-ccHHHHHHHHHHHHccCCCc------HH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--D------AKQLALSFEAQGNNLAED-GKFREALGKWEAALNLRPEN------AV 92 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~------~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~~------~~ 92 (199)
..++|.++...|++++|+..|.++ . ....+.++..+|.++... |++++|+.+|++++.+.|.+ ..
T Consensus 80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~ 159 (292)
T 1qqe_A 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 357899999999999999999888 1 122367899999999996 99999999999999998754 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH----
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAE-------AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA---- 161 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---- 161 (199)
++.++|.++..+|++++|+.+|++++.+.|++.. ++.++|.++..+|++++|+..|++++.++|.+...
T Consensus 160 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 239 (292)
T 1qqe_A 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 7899999999999999999999999999887543 67899999999999999999999999999987653
Q ss_pred -HHHHHHHHH--HHhhhhhhhhhcc
Q 029105 162 -RDDRQTALH--LVKRRKHLHLSGL 183 (199)
Q Consensus 162 -~~~l~~~~~--~~~~~~~a~~~~~ 183 (199)
+..++.++. ..+++++|...+-
T Consensus 240 ~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 240 FLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 344555443 2345666665543
No 98
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=9.7e-19 Score=126.27 Aligned_cols=155 Identities=9% Similarity=-0.088 Sum_probs=129.1
Q ss_pred hhcchhhhhccchhhhhhccccc--c--hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--D--AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
..++..+...+++++|+..+... . .|+++.+++.+|.++...|++++|+..+++ |+++.++..+|.++..+
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Confidence 34566667777788888877765 2 588888899999999999999999998887 78889999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLG--RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
|++++|+..+++++..+|++.......+ .++...|++++|+..|++++..+|+++.++.++|.++..+|++++|...+
T Consensus 144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998765444333 33445689999999999999999999999999999999999999999877
Q ss_pred ccccch
Q 029105 183 LSNDAN 188 (199)
Q Consensus 183 ~~~~~~ 188 (199)
..+.+.
T Consensus 224 ~~al~~ 229 (291)
T 3mkr_A 224 QEALDK 229 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 99
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=127.15 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=144.4
Q ss_pred hhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc--------CCCc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL--------RPEN 90 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~ 90 (199)
..+|..+...|++++|+..+.++ ..|..+.++..+|.++...|++++|+..+++++.. .|..
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 110 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 67799999999999999999887 15778899999999999999999999999999987 3566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAI-------- 154 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------- 154 (199)
..++..+|.++...|++++|+..+++++.+. |....++..+|.++...|++++|+..|++++..
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999884 677888999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 155 KPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 155 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.|....++..++.++...|++++|...+....+.
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999998877666543
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=7.6e-19 Score=137.63 Aligned_cols=151 Identities=14% Similarity=-0.053 Sum_probs=133.7
Q ss_pred cccccCCCCCCchHhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105 14 RSLQQFPNLPFDQQDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 91 (199)
..+...|+.+ .....+|.++...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus 14 ~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 14 AAVRHRPQDF--VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp -------CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 4444555432 34467899999999999999999998 7888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF---GEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
.++.++|.++...|++++|+..++++++.+|+++.++..+|.++..+ |++++|+..++++++.+|.+...+..++
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999999999999999999999999999999999999 9999999999999999998766665554
No 101
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=4.7e-19 Score=114.62 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=102.3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 78 GKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
..|++++.++|++...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 158 SEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 158 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
++.++..+|.++..+|++++|...+....+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998877665544
No 102
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=4.4e-18 Score=121.41 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=85.5
Q ss_pred hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQVLLE- 103 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~- 103 (199)
..+|..+...|++++|+..|.++..|.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|.++..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCC
Confidence 34455556666666666666555445555556666666666 666666666666665553 45555666666665
Q ss_pred ---cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----H
Q 029105 104 ---LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL----V 172 (199)
Q Consensus 104 ---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~ 172 (199)
.+++++|+..|++++.. +++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++.+++.++.. .
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred CCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC
Confidence 66666666666666554 245555666666655 566666666666665543 34555555555555 5
Q ss_pred hhhhhhhhhcc
Q 029105 173 KRRKHLHLSGL 183 (199)
Q Consensus 173 ~~~~~a~~~~~ 183 (199)
+++++|...+.
T Consensus 164 ~~~~~A~~~~~ 174 (273)
T 1ouv_A 164 KDLKKALASYD 174 (273)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555554443
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=1.8e-18 Score=129.05 Aligned_cols=161 Identities=11% Similarity=-0.066 Sum_probs=141.2
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC-------cHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE-------NAVL 93 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~ 93 (199)
+..|..+...|++++|+..|.++ ..+..+.++..+|.++...|+++.|+..+++++.+.+. ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 45688899999999999998877 35567889999999999999999999999999987543 2568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcHHHH
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALA-----IKPDSEEAR 162 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~ 162 (199)
+.++|.++...|++++|+..+++++.+.+ ....++.++|.+|..+|++++|+.+|++++. .+|..+.++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 89999999999999999999999998743 2356789999999999999999999999999 788889999
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
.++|.++..+|++++|...+..+.+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988776665543
No 104
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.78 E-value=1e-18 Score=113.16 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=93.7
Q ss_pred HhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 68 AEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA----------WNALKAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
-+.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|+++.+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 138 FG-----------EPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 138 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
+| ++++|+.+|+++++++|++...+..+..+-.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 85 8999999999999999999887776665443
No 105
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=2.6e-18 Score=124.94 Aligned_cols=144 Identities=13% Similarity=0.010 Sum_probs=102.1
Q ss_pred hhhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 42 DDNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAV-LHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 42 ~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
++|+..|.++ ..|.+..+|..+|.++...|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6777777776 25667777777777777777777777777777777777765 7777777777777777777777777
Q ss_pred hhcccccHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 118 TELEQSWAEAWITLGRAQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++..|.+..++...+.+.. ..|++++|+..|+++++.+|+++.+|..++.++...|++++|...+..+
T Consensus 161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777766666665555433 2577777777777777777777777777777777777777666554433
No 106
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.78 E-value=1.7e-18 Score=106.74 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc--cHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS--WAEAWIT 130 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 130 (199)
+|.++.++..+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcCCCcH
Q 029105 131 LGRAQLNF-GEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 131 lg~~~~~~-~~~~~A~~~~~~al~~~p~~~ 159 (199)
+|.++... |++++|+.++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999998753
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=3.3e-18 Score=123.25 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=127.8
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.|.....+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 133 RAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
..+...++.++|+..+++++..+|+++.++.++|.++...|++++|...+......
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999877665553
No 108
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.77 E-value=5.7e-19 Score=130.02 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=97.8
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----------------VLHEQKAQVLLELGDAWNALKAA 114 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~~~~~~A~~~~ 114 (199)
..+..+..+..+|..++..|++++|+..|++++.+.|++. .++.++|.++..+|+|++|+..|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567888999999999999999999999999999999877 48999999999999999999999
Q ss_pred HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh-hhhhhhhhc
Q 029105 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK-RRKHLHLSG 182 (199)
Q Consensus 115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~a~~~~ 182 (199)
++++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+..... ..+++...+
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998855544 444444433
No 109
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.77 E-value=1e-18 Score=117.00 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=111.2
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH-HHhcCCh--H
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA-QLNFGEP--D 142 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~--~ 142 (199)
.+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 346678999999999999999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
+|+..|++++..+|+++.++..+|.++...|++++|...+....+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998877665543
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.77 E-value=2.1e-18 Score=118.94 Aligned_cols=159 Identities=12% Similarity=-0.031 Sum_probs=140.7
Q ss_pred hHhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcc----cHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDG----KFREALGKWEAALNLRPENAVLHEQKAQVL 101 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 101 (199)
...+.+|.++...+++++|+..|.++....++.+++.+|.++.. + ++++|+.+|+++++ +.++.+++++|.++
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 34467899999999999999999999777789999999999998 7 99999999999965 57899999999999
Q ss_pred HH----cCCHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 102 LE----LGDAWNALKAATRATELEQ--SWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 102 ~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
.. .+++++|+.+|++++...| .++.+++.+|.+|.. .+++++|+.+|++++.. |.++.+..+||.+|..
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 88 8999999999999999988 569999999999999 88999999999999999 7778899999999976
Q ss_pred H-h-----hhhhhhhhcccccch
Q 029105 172 V-K-----RRKHLHLSGLSNDAN 188 (199)
Q Consensus 172 ~-~-----~~~~a~~~~~~~~~~ 188 (199)
- | ++++|...+..+.+.
T Consensus 175 g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 175 GEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp CBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc
Confidence 4 2 678887766655443
No 111
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.77 E-value=1.1e-18 Score=109.21 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=89.5
Q ss_pred hcccHHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH
Q 029105 69 EDGKFREALGKWEAALNL---RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 69 ~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 145 (199)
..|++++|+..|++++++ +|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHh
Q 029105 146 ESFERALAIKPDSEEARDDRQTALHLVK 173 (199)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~l~~~~~~~~ 173 (199)
..+++++...|+++.+......+....+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999887655444443333
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=7.4e-18 Score=122.51 Aligned_cols=162 Identities=9% Similarity=-0.114 Sum_probs=142.8
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHH-HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLAL-SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE- 103 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~- 103 (199)
...+|..+...|++++|...|.++ ..|.++. ++..+|.++...|++++|+..|+++++..|.+..++...+.+...
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 356788899999999999999998 5666665 899999999999999999999999999999998888777766544
Q ss_pred cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-cHHHHHHHHHHHHHHhhhhhhh
Q 029105 104 LGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI---KPD-SEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
.|++++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++.. .|+ ...+|..++..+...|+.++|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 799999999999999999999999999999999999999999999999996 553 6889999999999999999988
Q ss_pred hhcccccchh
Q 029105 180 LSGLSNDANR 189 (199)
Q Consensus 180 ~~~~~~~~~~ 189 (199)
.....+.+..
T Consensus 262 ~~~~~a~~~~ 271 (308)
T 2ond_A 262 KVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7665555443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=1.7e-18 Score=115.94 Aligned_cols=134 Identities=16% Similarity=0.033 Sum_probs=116.2
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
|.....+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444566888999999999999999999999999999999999999999999999999999999999999 8877766665
Q ss_pred HHH-hcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 134 AQL-NFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 134 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
+.. ..+...+|+..+++++..+|+++.++..+|.++...|++++|...+......
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 533 3345566899999999999999999999999999999999998877655443
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.76 E-value=5.1e-18 Score=111.93 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=115.6
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..++..|++++|+..|.++ ..|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence 56799999999999999999988 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHH--HHhcCChHHHHHHHHHHHhc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRA--QLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~ 154 (199)
+++|+..+++++.++|.++.++..++.+ +...|++++|+..+.++..+
T Consensus 97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999888555554 88899999999999876543
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.76 E-value=1.5e-17 Score=119.50 Aligned_cols=104 Identities=29% Similarity=0.364 Sum_probs=94.2
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA 134 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 134 (199)
..+..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCc
Q 029105 135 QLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
+..+|++++|+..|++++.++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999888765
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.76 E-value=5.4e-18 Score=124.72 Aligned_cols=126 Identities=13% Similarity=-0.006 Sum_probs=116.1
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhH---------------HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQL---------------ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 91 (199)
.++|..++..|++++|+..|.++ ..|.+ ..++..+|.++...|++++|+..|++++.++|+++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 230 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 230 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 56799999999999999999988 44554 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKA-IESFERALAI 154 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~ 154 (199)
.+++++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++| ...|++++..
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 4566666543
No 117
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=2.3e-17 Score=117.69 Aligned_cols=149 Identities=15% Similarity=0.054 Sum_probs=92.0
Q ss_pred hhcchhhhh----ccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 29 QEHGLSGAE----LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 29 ~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
..+|.++.. .+++++|+..|.++....++.+++.+|.++.. .+++++|+..|++++..+ ++.++..+|.+
T Consensus 42 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 119 (273)
T 1ouv_A 42 FNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 455666666 66666666666666333455666666666666 666666666666666552 56666666666
Q ss_pred HHH----cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Q 029105 101 LLE----LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL- 171 (199)
Q Consensus 101 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 171 (199)
+.. .+++++|+.+++++++.. ++.+++.+|.++.. .+++++|+.+|+++++. +++.++..+|.++..
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHG 195 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence 666 666666666666666654 35556666666665 66666666666666655 235556666666666
Q ss_pred ---Hhhhhhhhhhcc
Q 029105 172 ---VKRRKHLHLSGL 183 (199)
Q Consensus 172 ---~~~~~~a~~~~~ 183 (199)
.+++++|...+.
T Consensus 196 ~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 196 EGATKNFKEALARYS 210 (273)
T ss_dssp CSSCCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 666666555443
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=3.8e-18 Score=122.57 Aligned_cols=159 Identities=16% Similarity=0.050 Sum_probs=134.9
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
....+|..++..|++++|+..|.++ ..|.++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3457799999999999999999998 67888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccH-----HHH--------------------------HHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 105 GDAWNALKAATRATELEQSWA-----EAW--------------------------ITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~-----~~~--------------------------~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
|++++|+..+++++.++|+++ ..+ ..++.. ..|++++|++.++++++
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHE 163 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGT
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 999999999999999998652 111 122222 36788999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHH-hhhhhhhhhcccccc
Q 029105 154 IKPDSEEARDDRQTALHLV-KRRKHLHLSGLSNDA 187 (199)
Q Consensus 154 ~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 187 (199)
.+|++......++.++... +.++++...+....+
T Consensus 164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988888888877776 667777665544433
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=1.7e-17 Score=115.37 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=116.4
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH---HHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA---VLHEQKAQVLLELGDAWNALKAATRATELEQSWAE---AWI 129 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 129 (199)
.+..++.+|..++..|++++|+..|++++...|.++ .+++.+|.+++..|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356789999999999999999999999999988764 78999999999999999999999999999998764 789
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHHhh
Q 029105 130 TLGRAQLN------------------FGEPDKAIESFERALAIKPDSEEAR-----------------DDRQTALHLVKR 174 (199)
Q Consensus 130 ~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~ 174 (199)
.+|.++.. .|++++|+..|+++++..|+++.+. ..+|.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999876 5789999999999999999987554 578889999999
Q ss_pred hhhhhhhcccccc
Q 029105 175 RKHLHLSGLSNDA 187 (199)
Q Consensus 175 ~~~a~~~~~~~~~ 187 (199)
+.+|...+....+
T Consensus 163 ~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 163 WVAVVNRVEGMLR 175 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998876654443
No 120
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=126.53 Aligned_cols=162 Identities=18% Similarity=0.078 Sum_probs=139.6
Q ss_pred hhhcchhhhhccc--------------------hhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHH
Q 029105 28 DQEHGLSGAELEK--------------------NDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGK 79 (199)
Q Consensus 28 ~~~~g~~~~~~~~--------------------~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 79 (199)
...+|.++...|+ +++|+..+.++ ..+....++..+|.++...|++++|+..
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3567889999999 99999888776 3566778899999999999999999999
Q ss_pred HHHHHccCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHH
Q 029105 80 WEAALNLRPENA------VLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 80 ~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
+++++.+.+... .++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|+..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 999998865543 489999999999999999999999999987765 77889999999999999999999
Q ss_pred HHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 148 FERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 148 ~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
+++++.+.+.. ..++..+|.++...|++++|...+..+.+..
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999885543 6688999999999999999988776665543
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.75 E-value=3.2e-17 Score=118.28 Aligned_cols=155 Identities=7% Similarity=-0.029 Sum_probs=127.8
Q ss_pred hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHE 95 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~ 95 (199)
..+..+...|++++|+..+.+. ..+.....++.+|.++...|++++|+..+++++...+.. ..++.
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4567788899999999988755 112334566779999999999999999999999865443 56899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhc---cccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHH
Q 029105 96 QKAQVLLELGDAWNALKAATRATEL---EQSW----AEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEAR 162 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 162 (199)
++|.++...|++++|+.++++++.+ .|++ ..+++++|.+|..+|++++|+.++++++.+.+. ...++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999999999999999944 4443 268999999999999999999999999987543 27789
Q ss_pred HHHHHHHHHHhhhhhh-hhhccc
Q 029105 163 DDRQTALHLVKRRKHL-HLSGLS 184 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a-~~~~~~ 184 (199)
.++|.++..+|++++| ...+..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999999999 443433
No 122
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.90 Aligned_cols=161 Identities=12% Similarity=-0.043 Sum_probs=127.9
Q ss_pred Hhhhcchhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHh--cccHHHHHHHHHHHHccCCCcHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAE--DGKFREALGKWEAALNLRPENAVLH 94 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~ 94 (199)
...++|.++..+|++++|+..+.++ ..+..+.++..+|.++.. .+++++|+.+|++++.++|+++.++
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 3457899999999999999988776 233456777777776654 4679999999999999999999999
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 029105 95 EQKAQVLLE---LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQT 167 (199)
Q Consensus 95 ~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 167 (199)
..+|.++.. .+++++|++.+++++.++|+++.++..+|..+.. .|++++|+..+++++..+|.++.++.++|.
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~ 255 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 998888654 5777888999999999999888888888876654 456788888888888888888888888888
Q ss_pred HHHHHhhhhhhhhhcccccc
Q 029105 168 ALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 168 ~~~~~~~~~~a~~~~~~~~~ 187 (199)
++...|++++|...+..+.+
T Consensus 256 ~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHH
Confidence 88888888888776655544
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-17 Score=105.55 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=103.1
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
...|..++..|++++|+..|.++ ..|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 56799999999999999999998 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc------cccHHHHHHHHHHHHh
Q 029105 107 AWNALKAATRATELE------QSWAEAWITLGRAQLN 137 (199)
Q Consensus 107 ~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~ 137 (199)
+++|+..+++++.++ |++..++..++.+...
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999 8899999888887654
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.74 E-value=2.2e-17 Score=119.17 Aligned_cols=163 Identities=7% Similarity=-0.059 Sum_probs=132.6
Q ss_pred chhhhhccchhhhhhccccc-----chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHHHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF-----DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHEQK 97 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~l 97 (199)
...+...|++++|+..+.++ ..|.. ...+..+|.++...+++++|+..|++++.+.+.. ..++.++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 56677889999999998876 22222 3345568999999999999999999999864432 3479999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHH
Q 029105 98 AQVLLELGDAWNALKAATRATEL-------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDD 164 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 164 (199)
|.++...|++++|+.++++++.. .+....+++++|.+|..+|++++|+.++++++.+.+.. +.++.+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999953 34456689999999999999999999999999886443 789999
Q ss_pred HHHHHHHHhh-hhhhhhhcccccchhhhcCC
Q 029105 165 RQTALHLVKR-RKHLHLSGLSNDANRFVVGD 194 (199)
Q Consensus 165 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 194 (199)
+|.++..+|+ +++|...+..+....-..|+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999999995 59998877766655444444
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=104.52 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=107.6
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLEL 104 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 104 (199)
....+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 3467799999999999999999988 67888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 140 (199)
|++++|+..+++++..+|.+..++..++.++..+|+
T Consensus 98 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 98 KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988764
No 126
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=124.97 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=128.4
Q ss_pred hhcchhhhhccchhhhhhccccc-----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PE 89 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~ 89 (199)
..+|.++...|++++|++.|.++ .+|....++.++|.+|..+|++++|+.++++++.+. +.
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 45799999999999999999877 245567788999999999999999999999998763 34
Q ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105 90 NAVLHEQKAQVLLEL--GDAWNALKAATRATELEQSWAEAWITLGRAQLN---FGEPDKAIESFERALAIKPDSEEARDD 164 (199)
Q Consensus 90 ~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (199)
.+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++.++|+..|+++++++|+++.++..
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 578888888887765 469999999999999999999999999988654 577889999999999999999999999
Q ss_pred HHHHHHHH----hhhhhhhhhc
Q 029105 165 RQTALHLV----KRRKHLHLSG 182 (199)
Q Consensus 165 l~~~~~~~----~~~~~a~~~~ 182 (199)
++.++... +++++|...+
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~ 236 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLV 236 (472)
T ss_dssp HHHHHHHCC------CHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 88776654 4555555544
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=1.2e-17 Score=121.38 Aligned_cols=155 Identities=13% Similarity=0.008 Sum_probs=123.3
Q ss_pred cchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC------cHHHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE------NAVLHEQ 96 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~ 96 (199)
.|.++...|++++|+..|.++ ..+....++..+|.++...|++++|+.+|++++.+.+. ...++.+
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788889999998888877 22344678888999999999999999999998887432 1467888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHH
Q 029105 97 KAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDD 164 (199)
Q Consensus 97 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 164 (199)
+|.++.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+..|++++.+.|.+ ..++..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9999988 99999999999999887643 5678889999999999999999999999876543 346778
Q ss_pred HHHHHHHHhhhhhhhhhccccc
Q 029105 165 RQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 165 l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
++.++..+|++++|...+....
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888899888887665544
No 128
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.73 E-value=2.2e-17 Score=109.02 Aligned_cols=114 Identities=9% Similarity=-0.077 Sum_probs=103.6
Q ss_pred hhhcchhhhhccchhhhhhccccc--c------------------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--D------------------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR 87 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 87 (199)
..+.|..++..|+|++|+..|.++ . .|..+.++..+|.+++..|++++|+..+++++.++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 357799999999999999999988 3 67788999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH-HHHHHHHHHHHhcCCh
Q 029105 88 PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA-EAWITLGRAQLNFGEP 141 (199)
Q Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~ 141 (199)
|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 6677787776655443
No 129
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=124.61 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=105.7
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc--------------------HHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK--------------------FREALGKW 80 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~ 80 (199)
..+|.++...|++++|+..+.++ ..+..+.++..+|.++...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 34566666677777777666655 122235566777777777777 77777777
Q ss_pred HHHHcc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH------HHHHHHHHHHHhcCChHHHHHHH
Q 029105 81 EAALNL------RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWA------EAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 81 ~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
.+++.+ .|....++..+|.++...|++++|+..+++++.+.|... .++..+|.++...|++++|+..+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 776655 233345677777777777777777777777777655432 26777777777777777777777
Q ss_pred HHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 149 ERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 149 ~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
++++.+.|.. ..++..+|.++...|++++|...+..+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 7777665544 55677777777777777777665554443
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.73 E-value=3e-17 Score=111.71 Aligned_cols=158 Identities=15% Similarity=0.025 Sum_probs=124.4
Q ss_pred hhccchhhhhh---cccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc------cCCCcHHHHHHHHHHHHHcCC
Q 029105 36 AELEKNDDNNE---HQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALN------LRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 36 ~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~ 106 (199)
+..|++++|.. .+.. ..+..+.++..+|.++...|++++|+..+++++. ..|....++.++|.++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45788888888 4432 3336788999999999999999999999999998 445557889999999999999
Q ss_pred HHHHHHHHHHHhhc------cc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHHHh
Q 029105 107 AWNALKAATRATEL------EQ-SWAEAWITLGRAQLNFGEPDKAIESFERALAIKP--DS----EEARDDRQTALHLVK 173 (199)
Q Consensus 107 ~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~ 173 (199)
+++|+..+++++.+ +| ....++..+|.++...|++++|+..+++++.+.+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999988 33 3456789999999999999999999999997632 22 335689999999999
Q ss_pred hhhhhhhhcccccchhhhcCC
Q 029105 174 RRKHLHLSGLSNDANRFVVGD 194 (199)
Q Consensus 174 ~~~~a~~~~~~~~~~~~~~~~ 194 (199)
++++|...+..+.+..-..|+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 999998877666655444444
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=121.15 Aligned_cols=162 Identities=18% Similarity=0.072 Sum_probs=139.3
Q ss_pred hhhcchhhhhccc--------------------hhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHH
Q 029105 28 DQEHGLSGAELEK--------------------NDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGK 79 (199)
Q Consensus 28 ~~~~g~~~~~~~~--------------------~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 79 (199)
...+|.++...|+ +++|+..+.++ ..+..+.++..+|.++...|++++|+..
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3567899999999 89999888776 3556678899999999999999999999
Q ss_pred HHHHHccCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHH
Q 029105 80 WEAALNLRPEN------AVLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 80 ~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
+++++...+.. ..++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+..
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999876543 2489999999999999999999999999987765 77899999999999999999999
Q ss_pred HHHHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 148 FERALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 148 ~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
+++++.+.+.. ..++..++.++...|++++|...+..+.+..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999886543 4588999999999999999988776665543
No 132
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=1.5e-17 Score=124.81 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=101.1
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc-----------------HHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK-----------------FREALGKWEAA 83 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~~~~~ 83 (199)
..+|.++...|++++|+..+.++ ..+....++..+|.++...|+ +++|+..++++
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 34566666666666666666655 244556666667777777777 67777766666
Q ss_pred HccC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH------HHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 84 LNLR------PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE------AWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 84 l~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
+.+. +....++..+|.++...|++++|+.++++++.+.|.... ++..+|.++...|++++|+..|+++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 6542 222356666777777777777777777777766554322 6667777777777777777777777
Q ss_pred HhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 152 LAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 152 l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
+.+.|.. ..++..+|.++...|++++|...+..+.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7665532 4566677777777777777665554443
No 133
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=8.5e-18 Score=126.22 Aligned_cols=159 Identities=19% Similarity=0.092 Sum_probs=103.1
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc------CCCcHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL------RPENAVLH 94 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~ 94 (199)
..+|.++...|++++|+..+.++ ..+..+.++..+|.++...|++++|+..+++++.+ .|....++
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 169 (411)
T 4a1s_A 90 SQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRAL 169 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 45566666667777666666655 24556666777777777777777777777776666 34445666
Q ss_pred HHHHHHHHHcCC-----------------HHHHHHHHHHHhhcc------cccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 95 EQKAQVLLELGD-----------------AWNALKAATRATELE------QSWAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 95 ~~la~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
..+|.++...|+ +++|+.++++++.+. +....++..+|.++...|++++|+.+++++
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 777777777777 777777777666653 233446667777777777777777777777
Q ss_pred HhcCCCcHH------HHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 152 LAIKPDSEE------ARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 152 l~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+.+.|.... ++..++.++...|++++|...+.....
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 766554322 666777777777777776665544433
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.72 E-value=3.2e-18 Score=131.40 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=118.2
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..|.++ ..|.++.++..+|.++...|++++|+..++++++++|+++.++.++|.++..+|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 46789999999999999999998 7788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHH--HHhcCChHHHHHHHH-----------HHHhcCCCc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRA--QLNFGEPDKAIESFE-----------RALAIKPDS 158 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~-----------~al~~~p~~ 158 (199)
+++|+..++++++++|+++.++..++.+ +..+|++++|+..++ +++.++|..
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999999999999998 889999999999999 888887764
No 135
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.72 E-value=7.8e-17 Score=120.30 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=134.0
Q ss_pred hhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc-----cC-CCcHHH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN-----LR-PENAVL 93 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~-~~~~~~ 93 (199)
..++|.++...|++++|+..+.++ ..+..+.++..+|.++...|++++|+.++++++. .+ |..+.+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 356789999999999999998887 2444567899999999999999999999999998 46 777889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELE-----QSWAEAWITLGRAQLNFGE---PDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
+.++|.++...|++++|+.++++++.+. |.....+..+|.++...|+ +++|+..+++. ...|....++..+
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 345 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 9999999999999999999999999884 4444456779999999999 78888888776 3445556788999
Q ss_pred HHHHHHHhhhhhhhhhcccccchh
Q 029105 166 QTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 166 ~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
|.++...|++++|...+..+.+..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999988776665543
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.72 E-value=5e-17 Score=102.66 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=107.9
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence 56789999999999999999988 6677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD 142 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 142 (199)
+++|+..+++++..+|+++.++..+|.++..+|+++
T Consensus 96 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 96 HVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998763
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.71 E-value=2.5e-17 Score=104.51 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=89.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH-------HH
Q 029105 89 ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE-------EA 161 (199)
Q Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~ 161 (199)
+.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999988653 57
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 162 RDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 162 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+.++|.++..+|++++|...+..+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999887665543
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.71 E-value=1.6e-16 Score=99.95 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
..++.+|..+...|++++|+..+++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhcccccch
Q 029105 172 VKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 172 ~~~~~~a~~~~~~~~~~ 188 (199)
.|++++|...+....+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999998877665543
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=1.6e-16 Score=105.08 Aligned_cols=102 Identities=14% Similarity=0.001 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 87 RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
.+.++..+..+|.+++..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.++|+++.++.++|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhcccccch
Q 029105 167 TALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 167 ~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
.++..+|++++|...+....+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999877666554
No 140
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=5.2e-17 Score=118.02 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=88.7
Q ss_pred hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhccc--------------------HHHHHHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGK--------------------FREALGKWE 81 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~ 81 (199)
.+|.++...|++++|+..+.++ ..+....++..+|.++...|+ +++|+..++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 4455555556666666555554 122234455566666666666 666666666
Q ss_pred HHHcc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 82 AALNL------RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 82 ~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
+++.+ .+....++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+..++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55544 22223456666666666666666666666666554332 2256666666666666666666666
Q ss_pred HHHhcCCCc------HHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 150 RALAIKPDS------EEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 150 ~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
+++.+.|.. ..++..+|.++...|++++|...+..+
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666554433 445666666666666666665544433
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.70 E-value=5e-17 Score=110.75 Aligned_cols=123 Identities=10% Similarity=-0.021 Sum_probs=107.0
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHH----------------HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA----------------LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN 90 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 90 (199)
...|..++..|++++|+..|.++ ..|.++ .++..+|.++...|++++|+..+++++.++|++
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 56799999999999999999988 334333 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHH-HHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAI-ESFERA 151 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~a 151 (199)
+.+++.+|.++..+|++++|+..|++++.++|+++.++..++.++..+++..++. ..|...
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887776 334433
No 142
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.70 E-value=1.7e-17 Score=122.17 Aligned_cols=132 Identities=15% Similarity=0.044 Sum_probs=84.7
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHH-----------------HHHHHHhhHHHhcccHHHHHHHHHHHHccCCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA-----------------LSFEAQGNNLAEDGKFREALGKWEAALNLRPE 89 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~ 89 (199)
..+|..++..|++++|+..|.++ ..|.+. .+++++|.++...|++++|+..|++++.++|+
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 262 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56799999999999999999987 455554 48999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRA-QLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
+..+++++|.++..+|++++|+..|++++.++|+++.++..++.+ ....+..+++...|.+++...|.++.
T Consensus 263 ~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999999999999999988 44567788899999999999998764
No 143
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=2.4e-16 Score=102.34 Aligned_cols=101 Identities=22% Similarity=0.080 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-------cHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQS-------WAE-----AWITLGRAQLNFGEPDKAIESFERALAI---- 154 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 154 (199)
...+.++|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 466889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHHHHhhhhhhhhhcccccchhhh
Q 029105 155 ---KPDSEEAR----DDRQTALHLVKRRKHLHLSGLSNDANRFV 191 (199)
Q Consensus 155 ---~p~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 191 (199)
+|++..+| +++|.++..+|++++|...+..+.+....
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999 99999999999999999998887776544
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.69 E-value=4e-16 Score=99.76 Aligned_cols=106 Identities=13% Similarity=0.012 Sum_probs=97.4
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105 85 NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164 (199)
Q Consensus 85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (199)
..+|.++..+..+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhcccccchhh
Q 029105 165 RQTALHLVKRRKHLHLSGLSNDANRF 190 (199)
Q Consensus 165 l~~~~~~~~~~~~a~~~~~~~~~~~~ 190 (199)
+|.++...|++++|...+....+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 99999999999999887776665443
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.69 E-value=1.7e-16 Score=99.10 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=87.3
Q ss_pred hccchhhhhhccccc--c---hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHH
Q 029105 37 ELEKNDDNNEHQEPF--D---AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNAL 111 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (199)
..|++++|+..|.++ . +|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 367899999999988 4 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccHHHHHHHHHHHHh
Q 029105 112 KAATRATELEQSWAEAWITLGRAQLN 137 (199)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~lg~~~~~ 137 (199)
..+++++...|+++........+...
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999998776544443333
No 146
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=3.5e-16 Score=113.63 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=120.6
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLH 94 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~ 94 (199)
.++|.++...|++++|+..|.++ .....+.++..+|.++.. |++++|+.+|++++.+.|.. ..++
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 46788999999999999999887 122356789999999999 99999999999999987653 5789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH-----HHH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE-----ARD 163 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~ 163 (199)
.++|.++..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+..|++++ ++|.... ...
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~ 237 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALE 237 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHH
Confidence 999999999999999999999999987653 3478899999999999999999999999 9997542 234
Q ss_pred HHHHHHHHHhhhhhh
Q 029105 164 DRQTALHLVKRRKHL 178 (199)
Q Consensus 164 ~l~~~~~~~~~~~~a 178 (199)
.++.++ ..++.+.+
T Consensus 238 ~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 238 DLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHH-HTTCHHHH
T ss_pred HHHHHH-HhcCHHHH
Confidence 444444 34444443
No 147
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.69 E-value=3.6e-16 Score=116.58 Aligned_cols=128 Identities=17% Similarity=0.074 Sum_probs=114.5
Q ss_pred hhhcchhhhhccchhhhhhccccc--------c-hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC------CcHH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--------D-AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP------ENAV 92 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~ 92 (199)
...+|.++...|++++|+..+.++ . .+..+.++..+|.++...|++++|+..|++++.+.+ ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 367899999999999999998887 1 345678899999999999999999999999998743 1246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh-----cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATE-----LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
++.++|.++..+|++++|+.++++++. .+|..+.++..+|.++..+|++++|+.++++++.+.
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999 788889999999999999999999999999999874
No 148
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=4.5e-16 Score=112.47 Aligned_cols=139 Identities=11% Similarity=0.010 Sum_probs=95.9
Q ss_pred hhccch-hhhhhccccc--chhhHHHHHHHHhhHHHhcc--cHHHHHHHHHHHHccCCCcHHHHHHHHHHH----HHc--
Q 029105 36 AELEKN-DDNNEHQEPF--DAKQLALSFEAQGNNLAEDG--KFREALGKWEAALNLRPENAVLHEQKAQVL----LEL-- 104 (199)
Q Consensus 36 ~~~~~~-~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~----~~~-- 104 (199)
...|.+ ++|+..+.++ .+|++..+|+..+.++...| ++++++.++..++..+|.+..+|+..+.++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 344444 4667666666 66777777777777777776 777777777777777777777777777766 555
Q ss_pred -CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 105 -GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPD--KAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 105 -~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
+++++++..+.+++..+|.+..+|..++.+....|.++ ++++.+.+++..+|.+..+|.+.+.+...++.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 56777777777777777777777777777777777666 67777777777777777777766666666554
No 149
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=1.8e-16 Score=109.28 Aligned_cols=141 Identities=13% Similarity=-0.018 Sum_probs=124.2
Q ss_pred hhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 029105 42 DDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG----DAWNALKAATRA 117 (199)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a 117 (199)
.+|+..|.++....++.+++.+|.++...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+++
T Consensus 3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 356777777755678999999999999999999999999999875 679999999999988 7 899999999999
Q ss_pred hhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH----Hhhhhhhhhhcccccc
Q 029105 118 TELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKP--DSEEARDDRQTALHL----VKRRKHLHLSGLSNDA 187 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 187 (199)
+. +.++.+++++|.+|.. .+++++|+.+|+++++..| .++.++.+||.++.. .+++++|...+..+.+
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 54 6789999999999998 8999999999999999988 458999999999998 7788888877766544
No 150
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.68 E-value=6.4e-16 Score=100.98 Aligned_cols=135 Identities=19% Similarity=0.133 Sum_probs=106.9
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc---
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------VLHEQKAQVLLELGDAWNALKAATRATELEQSW--- 124 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 124 (199)
+..+.++..+|.++...|++++|+..+++++...+... .++..+|.++...|++++|+..+++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 34567888899999999999999999999888755432 578888999999999999999999988876542
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 125 ---AEAWITLGRAQLNFGEPDKAIESFERALAIKPD------SEEARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 125 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
..++..+|.++...|++++|+..+++++.+.+. ...++..++.++...|++++|...+..+.+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 567888899999999999999999988876322 2457888899999999998887766555443
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.68 E-value=1.5e-16 Score=121.64 Aligned_cols=119 Identities=13% Similarity=0.008 Sum_probs=107.5
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhH---------------HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQL---------------ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA 91 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 91 (199)
.++|..++..|+|++|+..|.++ ..|.+ ..+++++|.+++..|++++|+..|++++.++|+++
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 351 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence 56799999999999999999988 44544 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
.+++++|.++..+|++++|+..|+++++++|++..++..++.++..++++++|...
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888754
No 152
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.67 E-value=2e-15 Score=93.82 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=93.2
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 75 EALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 75 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
+|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--cHHHHHHHHHHHHHHhhhhh
Q 029105 155 KPD--SEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 155 ~p~--~~~~~~~l~~~~~~~~~~~~ 177 (199)
.|. +......+...+..+++...
T Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~~ 107 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRRLAREDA 107 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhccccC
Confidence 884 45666777777777666544
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.66 E-value=7.7e-16 Score=96.33 Aligned_cols=112 Identities=25% Similarity=0.225 Sum_probs=104.7
Q ss_pred hhhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
...+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 356789999999999999999988 567778899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
++++|+..+++++..+|+++.++..+|.++...|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999987654
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.66 E-value=6.9e-16 Score=95.64 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=101.7
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGD 106 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 106 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 56789999999999999999988 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
+++|+..+++++..+|+++.++..++.+..
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999887753
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=2.6e-15 Score=106.60 Aligned_cols=136 Identities=11% Similarity=0.020 Sum_probs=119.3
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLEL 104 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~ 104 (199)
..++..+...|+|++|.+.|... ..|.+. +.+.+|.+++..++|++|+..|++++...+.. ..+++++|.++..+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34567888999999999999888 678888 99999999999999999999999887753221 35899999999999
Q ss_pred CCHHHHHHHHHHHhhcc--cc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 105 GDAWNALKAATRATELE--QS-WAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
|++++|+..|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999998654 65 6789999999999999999999999999999999 87766664
No 156
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.66 E-value=1.9e-15 Score=109.26 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=141.3
Q ss_pred hhcchhhhhcc--chhhhhhccccc--chhhHHHHHHHHhhHH----Hhc---ccHHHHHHHHHHHHccCCCcHHHHHHH
Q 029105 29 QEHGLSGAELE--KNDDNNEHQEPF--DAKQLALSFEAQGNNL----AED---GKFREALGKWEAALNLRPENAVLHEQK 97 (199)
Q Consensus 29 ~~~g~~~~~~~--~~~~A~~~~~~~--~~~~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~l 97 (199)
...|.++...+ ++++++..+..+ .+|.+..+|...+.++ ... +++++++.++.+++..+|.+..+|...
T Consensus 71 n~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R 150 (306)
T 3dra_A 71 IYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYR 150 (306)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35578888888 999999999888 8899999999999999 666 789999999999999999999999999
Q ss_pred HHHHHHcCCHH--HHHHHHHHHhhcccccHHHHHHHHHHHHhcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 98 AQVLLELGDAW--NALKAATRATELEQSWAEAWITLGRAQLNFGE------PDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 98 a~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
+.+....|.++ ++++++.+++..+|.+..+|..++.+....+. ++++++++.+++..+|.+..+|..++.++
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll 230 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIH 230 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHHhhhhhhhh
Q 029105 170 HLVKRRKHLHL 180 (199)
Q Consensus 170 ~~~~~~~~a~~ 180 (199)
...|+..++..
T Consensus 231 ~~~~~~~~~~~ 241 (306)
T 3dra_A 231 ERFDRSITQLE 241 (306)
T ss_dssp HHTTCCGGGGH
T ss_pred HhcCCChHHHH
Confidence 99998666444
No 157
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=98.50 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc------HHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS------EEARDD 164 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 164 (199)
+..+..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777776 667777
Q ss_pred HHHHHHHHhhhhhhhhh
Q 029105 165 RQTALHLVKRRKHLHLS 181 (199)
Q Consensus 165 l~~~~~~~~~~~~a~~~ 181 (199)
++.++..+|+++++...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 77777777776665543
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.65 E-value=4.3e-16 Score=95.77 Aligned_cols=102 Identities=12% Similarity=0.253 Sum_probs=95.7
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHH
Q 029105 86 LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARD 163 (199)
Q Consensus 86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 163 (199)
++|+++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|. +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368888999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-hhhhhhhhhcccccc
Q 029105 164 DRQTALHLV-KRRKHLHLSGLSNDA 187 (199)
Q Consensus 164 ~l~~~~~~~-~~~~~a~~~~~~~~~ 187 (199)
.++.++... |++++|.........
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 999999999 999998886655544
No 159
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.3e-15 Score=118.97 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=128.6
Q ss_pred hhhccch-hhhhhccccc--chhhHHHHHHHHhhHHHhccc----------HHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 029105 35 GAELEKN-DDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----------FREALGKWEAALNLRPENAVLHEQKAQVL 101 (199)
Q Consensus 35 ~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 101 (199)
....|++ ++|+..+.++ .+|++..+|+.++.++...|+ +++++.++++++..+|.+..+|...+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555 4678888888 889999999999999999988 99999999999999999999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 102 LELG--DAWNALKAATRATELEQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 102 ~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
...+ +++++++.+.++++++|.+..+|..++.+....| .++++++++.++++.+|.+..+|...+.++..+
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999 7799999999999999999999999999999999 899999999999999999999999999999886
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.3e-15 Score=92.61 Aligned_cols=95 Identities=22% Similarity=0.290 Sum_probs=89.6
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW------AEAWI 129 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 129 (199)
.+..+..+|.+++..|++++|+..|++++.++|+++.++.++|.++..+|++++|+..+++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 029105 130 TLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 130 ~lg~~~~~~~~~~~A~~~~~~ 150 (199)
.+|.++..+|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999888776654
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3e-15 Score=96.66 Aligned_cols=113 Identities=12% Similarity=-0.034 Sum_probs=103.2
Q ss_pred hHhhhcchhhhhccchhhhhhccccc--chhhH---HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPF--DAKQL---ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
.....+|..++..|++++|+..|.++ ..|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 34467799999999999999999988 55655 88999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
+...|++++|+..+++++.++|++..++..++.+....
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999888876543
No 162
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=5.7e-16 Score=121.07 Aligned_cols=149 Identities=11% Similarity=-0.029 Sum_probs=137.7
Q ss_pred hhcchhhhhccc----------hhhhhhccccc--chhhHHHHHHHHhhHHHhcc--cHHHHHHHHHHHHccCCCcHHHH
Q 029105 29 QEHGLSGAELEK----------NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG--KFREALGKWEAALNLRPENAVLH 94 (199)
Q Consensus 29 ~~~g~~~~~~~~----------~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~ 94 (199)
...|.++...|+ +++++..+..+ .+|.+..+|..++.++...+ ++++++..+.++++.+|.+..+|
T Consensus 67 ~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW 146 (567)
T 1dce_A 67 NCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW 146 (567)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHH
Confidence 345777777777 89999999988 88999999999999999999 77999999999999999999999
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCcH
Q 029105 95 EQKAQVLLELG-DAWNALKAATRATELEQSWAEAWITLGRAQLNF--------------GEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 95 ~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~ 159 (199)
...+.+....| .++++++++.++++.+|.+..+|..+|.++..+ +.++++++++.+++.++|++.
T Consensus 147 ~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 147 DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 99999999999 999999999999999999999999999998885 557999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 029105 160 EARDDRQTALHLVKRRKH 177 (199)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~ 177 (199)
.+|..++.++...+++++
T Consensus 227 saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 227 SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHhcCCCccc
Confidence 999999999988887555
No 163
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.64 E-value=2.1e-16 Score=102.41 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=85.0
Q ss_pred hhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccH----------HHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKF----------REALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
....+.+.+++|+..+..+ .+|.++.++..+|.++...+++ ++|+..|+++++++|++..+++++|.+
T Consensus 10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3455667899999999988 8999999999999999999876 599999999999999999999999999
Q ss_pred HHHcC-----------CHHHHHHHHHHHhhcccccH
Q 029105 101 LLELG-----------DAWNALKAATRATELEQSWA 125 (199)
Q Consensus 101 ~~~~~-----------~~~~A~~~~~~al~~~p~~~ 125 (199)
|..+| ++++|+.+|+++++++|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99875 89999999999999999975
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.64 E-value=1.6e-15 Score=95.85 Aligned_cols=111 Identities=13% Similarity=-0.016 Sum_probs=98.1
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHH---HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA---LSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVLHEQKAQV 100 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~ 100 (199)
+.+|..++..|++++|+..|..+ ..|.++ .+++.+|.+++..|++++|+..|++++..+|++ +.+++.+|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 56789999999999999999988 345444 899999999999999999999999999999999 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 101 LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 101 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
+..+|++++|+..+++++...|+++.+...+..+....+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999887776665554443
No 165
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.64 E-value=1.8e-15 Score=112.67 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=110.7
Q ss_pred hhcchhhhhccchhhhhhcccccc------------------hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPFD------------------AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN 90 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 90 (199)
..+|..++..|++++|+..|.++. .|..+.++..+|.+++..|++++|+..++++++++|++
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 306 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence 567999999999999999998872 45678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIES 147 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 147 (199)
+.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887653
No 166
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.8e-15 Score=117.53 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=123.8
Q ss_pred ccchh-------hhhhccccc---chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHcCC
Q 029105 38 LEKND-------DNNEHQEPF---DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-VLHEQKAQVLLELGD 106 (199)
Q Consensus 38 ~~~~~-------~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~ 106 (199)
.|+++ +|+..|.++ ..|.++.++..+|..+...|++++|...|++++...|.++ .+|..+|.++...|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 57776 788888877 2588888999999999999999999999999999998875 689999998888899
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 107 AWNALKAATRATELEQSWAEAWITLGRA-QLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
+++|...|+++++..|.....+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|...+-.+
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999999999998888777776666654 345888999999999999999988999988888888888888877655444
Q ss_pred c
Q 029105 186 D 186 (199)
Q Consensus 186 ~ 186 (199)
.
T Consensus 452 l 452 (530)
T 2ooe_A 452 L 452 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.63 E-value=1.4e-14 Score=105.43 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=126.2
Q ss_pred hhccchh-hhhhccccc--chhhHHHHHHHHhhHHHhccc----------HHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 36 AELEKND-DNNEHQEPF--DAKQLALSFEAQGNNLAEDGK----------FREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 36 ~~~~~~~-~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
...|+++ +|+..+..+ .+|.+..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456665 678888777 899999999999999988776 789999999999999999999999999999
Q ss_pred HcCC--HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 103 ELGD--AWNALKAATRATELEQSWAEAWITLGRAQLNFGE-PDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 103 ~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
..++ +++++.++.+++..+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|.+++.++..+
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9994 8999999999999999999999999999999999 59999999999999999999999999999887
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.62 E-value=4.2e-15 Score=97.06 Aligned_cols=129 Identities=21% Similarity=0.168 Sum_probs=111.0
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLH 94 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~ 94 (199)
..+|..+...|++++|+..+.++ .......++..+|.++...|++++|+..+++++.+.+.. ..++
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 56789999999999999999887 222234688999999999999999999999999875543 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
..+|.++...|++++|+..+++++...+ ....++..+|.++...|++++|+..+++++.+...
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998743 33567899999999999999999999999987543
No 169
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.62 E-value=8.5e-15 Score=86.80 Aligned_cols=83 Identities=30% Similarity=0.417 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HHH
Q 029105 170 HLV 172 (199)
Q Consensus 170 ~~~ 172 (199)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 170
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.62 E-value=1.1e-14 Score=86.26 Aligned_cols=86 Identities=29% Similarity=0.345 Sum_probs=82.0
Q ss_pred hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGR 133 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 133 (199)
+..+.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 029105 134 AQLNFG 139 (199)
Q Consensus 134 ~~~~~~ 139 (199)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 988765
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.61 E-value=4.8e-15 Score=106.90 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=107.0
Q ss_pred hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-------CCCcHHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-------RPENAVLH 94 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~~~~~~~~ 94 (199)
.+|..+...+++++|+..+.++ .......++..+|.++...|++++|+.+|++++.. .+....++
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 4688888889999999998877 11223568999999999999999999999999942 23335689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSW------AEAWITLGRAQLNFGE-PDKAIESFERALAI 154 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~ 154 (199)
+++|.++..+|++++|+.++++++.+.+.. +.+++++|.++..+|+ +++|+..|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654 7899999999999995 69999999999875
No 172
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=1.2e-14 Score=113.00 Aligned_cols=160 Identities=9% Similarity=-0.120 Sum_probs=137.2
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHH-HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH-HHHc
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLA-LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV-LLEL 104 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-~~~~ 104 (199)
..+|..+...|++++|...|.++ ..|.++ .+|..+|..+.+.|++++|...|++++...|.....+...+.+ +...
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 45678888899999999999988 555543 6899999999999999999999999999999887777766655 3469
Q ss_pred CCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHhhhhhhhh
Q 029105 105 GDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE----ARDDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~a~~ 180 (199)
|++++|..+|+++++.+|+++.+|..++.++...|++++|...|++++...|.++. +|..........|+.+.+..
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998776654 78888888888888888776
Q ss_pred hcccccch
Q 029105 181 SGLSNDAN 188 (199)
Q Consensus 181 ~~~~~~~~ 188 (199)
....+.+.
T Consensus 485 ~~~r~~~~ 492 (530)
T 2ooe_A 485 VEKRRFTA 492 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 173
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=2.5e-14 Score=106.25 Aligned_cols=157 Identities=9% Similarity=-0.021 Sum_probs=129.5
Q ss_pred hhcchhhhhccchhhhhhccccc--ch-----hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc------HHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DA-----KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN------AVLHE 95 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~ 95 (199)
...|.++...|++++|+..+.++ .. .....++..+|.++...|++++|...+++++.+.|.. ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45578888899999999988776 11 1234578889999999999999999999999876543 24578
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----cHHHH
Q 029105 96 QKAQVLLELGDAWNALKAATRATELE--------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-----SEEAR 162 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~ 162 (199)
++|.++...|++++|+..+++++.+. |....++..+|.++...|++++|+..+++++.+.|. ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 89999999999999999999999875 345567888999999999999999999999998775 24678
Q ss_pred HHHHHHHHHHhhhhhhhhhcccc
Q 029105 163 DDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
..++.++...|++++|.......
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999999987655433
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.59 E-value=1.1e-14 Score=106.37 Aligned_cols=138 Identities=10% Similarity=0.005 Sum_probs=128.4
Q ss_pred hccchhhhhhccccc--chhhHHHHHHHHhhHHHhcc-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHc-C-CHHHHH
Q 029105 37 ELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDG-KFREALGKWEAALNLRPENAVLHEQKAQVLLEL-G-DAWNAL 111 (199)
Q Consensus 37 ~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~-~~~~A~ 111 (199)
..+..++|+..+.++ .+|.+..+|+.++.++...| .+++++.++.+++..+|.+..+|..++.++... + ++++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344456788888888 88999999999999999999 599999999999999999999999999999998 8 999999
Q ss_pred HHHHHHhhcccccHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 112 KAATRATELEQSWAEAWITLGRAQLNFGEPD--------KAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 112 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
..+.+++..+|.+..+|..++.+....|.++ ++++.++++++.+|.|..+|.+.+.++..++.
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999888 99999999999999999999999999988876
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.58 E-value=1.2e-14 Score=98.67 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=112.4
Q ss_pred Hhhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc---CC----CcH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL---RP----ENA 91 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~----~~~ 91 (199)
....+|.++...|++++|+..+.++ ..+..+.++..+|.++...|++++|+..+++++.+ .+ ...
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 3467799999999999999998877 45667889999999999999999999999999988 44 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQS------WAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
.++.++|.++...|++++|+..+++++.+.+. ...++..+|.++...|++++|+..+++++.+...
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999976432 2345689999999999999999999999987543
No 176
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.58 E-value=3.2e-14 Score=109.55 Aligned_cols=155 Identities=11% Similarity=-0.007 Sum_probs=113.8
Q ss_pred hhhcchhhhh----ccchhhhhhcccccchhhHHHHHHHHhhHHHhc-----ccHHHHHHHHHHHHccCCCcHHHHHHHH
Q 029105 28 DQEHGLSGAE----LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAED-----GKFREALGKWEAALNLRPENAVLHEQKA 98 (199)
Q Consensus 28 ~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~l~~~~~~~~~~~~la 98 (199)
...+|.++.. .+++++|+..|.++....++.+++.+|.++... +++++|+.+|+++++. .++.+++++|
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 335 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLG 335 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 3456666666 677777777777774445566777777777776 7788888888877765 3566777888
Q ss_pred HHHHHcC---CHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 99 QVLLELG---DAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 99 ~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
.++...| ++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++. .++.++.++|.++..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 8877755 677888888888776 567788888888887 78888888888888775 357788888888887
Q ss_pred ----Hhhhhhhhhhcccccch
Q 029105 172 ----VKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 172 ----~~~~~~a~~~~~~~~~~ 188 (199)
.+++++|...+..+.+.
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC
Confidence 67777777766555443
No 177
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.58 E-value=5.1e-14 Score=108.42 Aligned_cols=152 Identities=10% Similarity=-0.062 Sum_probs=121.3
Q ss_pred hhcchhhhh----ccchhhhhhcccccchhhHHHHHHHHhhHHHh----cccHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 029105 29 QEHGLSGAE----LEKNDDNNEHQEPFDAKQLALSFEAQGNNLAE----DGKFREALGKWEAALNLRPENAVLHEQKAQV 100 (199)
Q Consensus 29 ~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 100 (199)
..+|..+.. .+++++|+..|.++....++.+++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 120 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVM 120 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 566777777 78888888888888555677888888988888 88889999999888765 467888888888
Q ss_pred HHH----cCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Q 029105 101 LLE----LGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQTALHL- 171 (199)
Q Consensus 101 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 171 (199)
+.. .+++++|+.+|+++... +++.+++.+|.+|.. .+++++|+.+|+++++. +++.++..+|.++..
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 196 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRG 196 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcC
Confidence 888 78888888888888764 567888888888887 77888888888888775 567888888888887
Q ss_pred ---Hhhhhhhhhhccccc
Q 029105 172 ---VKRRKHLHLSGLSND 186 (199)
Q Consensus 172 ---~~~~~~a~~~~~~~~ 186 (199)
.+++++|...+..+.
T Consensus 197 ~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSA 214 (490)
T ss_dssp SSSCCCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 677777776655443
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.58 E-value=2.2e-14 Score=104.86 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=135.5
Q ss_pred hhcchhhhhcc-chhhhhhccccc--chhhHHHHHHHHhhHHHhc-c-cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELE-KNDDNNEHQEPF--DAKQLALSFEAQGNNLAED-G-KFREALGKWEAALNLRPENAVLHEQKAQVLLE 103 (199)
Q Consensus 29 ~~~g~~~~~~~-~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 103 (199)
...|.++...| .+++++..+..+ .+|.+..+|..++.++... + ++++++.++.++++.+|.+..+|...+.+...
T Consensus 92 n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~ 171 (349)
T 3q7a_A 92 QYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH 171 (349)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34567777778 589999999888 8999999999999999988 7 89999999999999999999999999999999
Q ss_pred cCCHH--------HHHHHHHHHhhcccccHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 029105 104 LGDAW--------NALKAATRATELEQSWAEAWITLGRAQLNFGE-------PDKAIESFERALAIKPDSEEARDDRQTA 168 (199)
Q Consensus 104 ~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 168 (199)
.|.++ ++++++.++++.+|.+..+|..++.++...+. ++++++++.+++..+|++..+|..+.-+
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L 251 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF 251 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99888 99999999999999999999999999999987 6899999999999999999999999988
Q ss_pred HHHHhhh
Q 029105 169 LHLVKRR 175 (199)
Q Consensus 169 ~~~~~~~ 175 (199)
+...|+.
T Consensus 252 l~~~~~~ 258 (349)
T 3q7a_A 252 LKHFSLP 258 (349)
T ss_dssp HHHTTCC
T ss_pred HHhcCCC
Confidence 8887764
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.57 E-value=2.6e-14 Score=104.05 Aligned_cols=132 Identities=11% Similarity=-0.035 Sum_probs=119.9
Q ss_pred hhhhhhccccc--chhhHHHHHHHHhhHHHhccc--HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 029105 41 NDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGK--FREALGKWEAALNLRPENAVLHEQKAQVLLELGD-AWNALKAAT 115 (199)
Q Consensus 41 ~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~ 115 (199)
+++++..+..+ .+|.+..+|...+.++...++ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 57788887777 789999999999999999984 9999999999999999999999999999999999 699999999
Q ss_pred HHhhcccccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 116 RATELEQSWAEAWITLGRAQLNF--------------GEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 116 ~al~~~p~~~~~~~~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
+++..+|.+..+|..++.++... +.++++++++.+++..+|++..+|..+.-++...
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999887 4588999999999999999999998665555443
No 180
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=2.2e-13 Score=98.21 Aligned_cols=137 Identities=16% Similarity=0.050 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA------VLHEQKAQVLLELGDAWNALKAATRATELEQSW-- 124 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 124 (199)
.|.....+...+..++..|++++|+..+.+++...+... ..+..+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345566777889999999999999999999999877654 446778999999999999999999999865432
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHHhhhhhhhhhcccccchh
Q 029105 125 ----AEAWITLGRAQLNFGEPDKAIESFERAL---AIKPDSE----EARDDRQTALHLVKRRKHLHLSGLSNDANR 189 (199)
Q Consensus 125 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 189 (199)
..++..+|.+|..+|++++|+.+|++++ ...|++. .++.++|.++..+|++++|...+..+.+..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 4556543 689999999999999999998776665543
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.9e-15 Score=106.31 Aligned_cols=130 Identities=14% Similarity=-0.053 Sum_probs=113.5
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-ccc-HHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-QSW-AEAWITLGRA 134 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~-~~~~~~lg~~ 134 (199)
..+...++.++...|++++|.+.|..++...|++. ..+.+|.++++.++|++|+..++.++... |.. ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45666789999999999999999999999999988 99999999999999999999999887763 322 4589999999
Q ss_pred HHhcCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 135 QLNFGEPDKAIESFERALAIK--PD-SEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 135 ~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+..+|++++|+.+|++++.-. |. .+.+++.+|.++..+|+.++|...+.....
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999998654 55 678999999999999999999886654443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.57 E-value=5.2e-15 Score=93.33 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=100.3
Q ss_pred hhcchhhhhccchhhhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKAQ 99 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~ 99 (199)
..+|..+...|++++|+..+.++ ..|.++.++..+|.++...|++++|+..+++++...|.+ +.++..+|.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 56789999999999999999988 667788999999999999999999999999999998877 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
++...|++++|+..+++++...| ++..+..++.+....+
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 5888888888776544
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.56 E-value=4.3e-14 Score=85.65 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=67.0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--cHHHHH
Q 029105 86 LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD--SEEARD 163 (199)
Q Consensus 86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 163 (199)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++.+.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 367888888888888888888888888888888888888888888888888888888888888888887654 344555
Q ss_pred HHHHHHHHHhh
Q 029105 164 DRQTALHLVKR 174 (199)
Q Consensus 164 ~l~~~~~~~~~ 174 (199)
.+..++...+.
T Consensus 82 ~l~~~l~~~~~ 92 (100)
T 3ma5_A 82 ELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 55555554443
No 184
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=2e-14 Score=109.75 Aligned_cols=150 Identities=16% Similarity=0.052 Sum_probs=90.4
Q ss_pred hhhcchhhhhcc---chhhhhhccccc--chhhHHHHHHHHhhHHHhc----ccHHHHHHHHHHHHccCCCcHHHHHHHH
Q 029105 28 DQEHGLSGAELE---KNDDNNEHQEPF--DAKQLALSFEAQGNNLAED----GKFREALGKWEAALNLRPENAVLHEQKA 98 (199)
Q Consensus 28 ~~~~g~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~la 98 (199)
...+|.++...| ++++|+..|.++ ..+..+..++.+|.+|... +++++|+.+|+++. |+++.+++++|
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg 255 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 345566666666 666666666666 3444444456666666544 56666666666665 66666666666
Q ss_pred HH-H--HHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 029105 99 QV-L--LELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG-----EPDKAIESFERALAIKPDSEEARDDRQTALH 170 (199)
Q Consensus 99 ~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 170 (199)
.+ + ...+++++|+.+|++++.. +++.+++++|.+|. .| ++++|+.+|+++. |+++.+..+||.+|.
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 66 3 3466666666666666643 35666666666665 44 6666666666666 666666666666665
Q ss_pred H----Hhhhhhhhhhccccc
Q 029105 171 L----VKRRKHLHLSGLSND 186 (199)
Q Consensus 171 ~----~~~~~~a~~~~~~~~ 186 (199)
. ..++++|...+..+.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 4 225555555444433
No 185
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=1.2e-13 Score=105.38 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=125.2
Q ss_pred hhcchhhhhccchhhhhhccccc---chhhHHHHHHHHhhHHHhcc---cHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF---DAKQLALSFEAQGNNLAEDG---KFREALGKWEAALNLRPENAVLHEQKAQVLL 102 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 102 (199)
+.+|.++...+.++++....... ....++.+++.+|.++...| ++++|+.+|+++....|..+..++++|.+|.
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45666777766665555542222 12233448999999999999 9999999999999999999999999999997
Q ss_pred Hc----CCHHHHHHHHHHHhhcccccHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh--
Q 029105 103 EL----GDAWNALKAATRATELEQSWAEAWITLGRA-Q--LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVK-- 173 (199)
Q Consensus 103 ~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-- 173 (199)
.. +++++|+.+|+++. |+++.+++++|.+ + ...+++++|+.+|+++... +++.+..+||.+|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 65 79999999999998 8999999999998 5 5789999999999999864 58999999999998 66
Q ss_pred ---hhhhhhhhccccc
Q 029105 174 ---RRKHLHLSGLSND 186 (199)
Q Consensus 174 ---~~~~a~~~~~~~~ 186 (199)
++++|...+..+.
T Consensus 299 ~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV 314 (452)
T ss_dssp SCCCHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 8888887776655
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.53 E-value=1.3e-14 Score=87.66 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=48.3
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPENAV-LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 140 (199)
..|.+++..|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|++++.++|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4455555555566666666655555555555 55555555555556666666665555555555554432 33
Q ss_pred hHHHHHHHHHHHhcCCC
Q 029105 141 PDKAIESFERALAIKPD 157 (199)
Q Consensus 141 ~~~A~~~~~~al~~~p~ 157 (199)
+.+++..|++++..+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 44445555544444443
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=3.8e-13 Score=99.82 Aligned_cols=157 Identities=16% Similarity=0.018 Sum_probs=125.3
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC--------CCcHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR--------PENAV 92 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~ 92 (199)
..+|.++...|++++|+..+.++ .......++..+|.++...|++++|+..+++++... |....
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 56788999999999999998887 112234567889999999999999999999999874 34457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CcH-HHHH-
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQS-----WAEAWITLGRAQLNFGEPDKAIESFERALAIKP--DSE-EARD- 163 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~-~~~~- 163 (199)
++.++|.++...|++++|...+++++.+.+. ...++..+|.++...|++++|+..+++++.+.+ ..+ ....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 7888999999999999999999999988664 356788999999999999999999999987733 222 2111
Q ss_pred ---HHHHHHHHHhhhhhhhhhcccc
Q 029105 164 ---DRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 164 ---~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
.++.++...|++++|.......
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3445577889999887755443
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.50 E-value=3e-13 Score=103.79 Aligned_cols=128 Identities=15% Similarity=0.076 Sum_probs=107.8
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------cccc
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSW 124 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~ 124 (199)
...+..+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ +|+.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999875 3444 478899999999999999999999999976 4556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHHhhhhhhhhhcccccch
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAI-----KPDSE---EARDDRQTALHLVKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 188 (199)
...+.++|.+|..+|++++|+..|++++.+ .|+++ +....++.++..++.+++|+..+..+.+.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999976 46665 45678999999999999998877766543
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.49 E-value=2e-13 Score=82.70 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc--HHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW--AEAWIT 130 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~ 130 (199)
+|.++.+++.+|.+++..|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++.+.|.. ......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999997753 344444
Q ss_pred HHHHHHhc
Q 029105 131 LGRAQLNF 138 (199)
Q Consensus 131 lg~~~~~~ 138 (199)
+...+...
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444433
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.47 E-value=2.3e-13 Score=84.39 Aligned_cols=95 Identities=23% Similarity=0.162 Sum_probs=80.1
Q ss_pred hhhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 43 DNNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 43 ~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
+|+..|.++ ..|.++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555 578889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--HHHHHHHHHHHHh
Q 029105 121 EQSW--AEAWITLGRAQLN 137 (199)
Q Consensus 121 ~p~~--~~~~~~lg~~~~~ 137 (199)
.|.. ......+...+..
T Consensus 83 ~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 8853 3444444444433
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=6.6e-13 Score=85.20 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=99.0
Q ss_pred cchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q 029105 39 EKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLE----LGDAWNALKAA 114 (199)
Q Consensus 39 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~ 114 (199)
+++++|+..|.++....++.+. +|.++...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4678888888888333344444 899999989999999999999886 678999999999998 89999999999
Q ss_pred HHHhhcccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 029105 115 TRATELEQSWAEAWITLGRAQLN----FGEPDKAIESFERALAIKPDSEEARDDRQ 166 (199)
Q Consensus 115 ~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 166 (199)
+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+..+|+
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999876 678899999999999 899999999999998874 455555544
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=1.4e-12 Score=93.71 Aligned_cols=143 Identities=8% Similarity=-0.109 Sum_probs=87.1
Q ss_pred hhcchhhhhccchhhhhhccccc--ch--hhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC----cHHHHHHH--H
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--DA--KQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE----NAVLHEQK--A 98 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~l--a 98 (199)
..+|.++...|++++|+..+.+. .. +...++....+.++...|+.+.|.+.++++.+.+|+ +......+ |
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 34566666677777777766665 22 256666667777777777777777777776666662 12222333 3
Q ss_pred HHHHHcC--CHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CCCcHHHHHH
Q 029105 99 QVLLELG--DAWNALKAATRATELEQS--WAEAWITLGRAQLNFGEPDKAIESFERALAI----------KPDSEEARDD 164 (199)
Q Consensus 99 ~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~ 164 (199)
.+....| ++.+|...|+++....|+ .+..+++ ++..+|++++|...++.+++. +|+++.++.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 3344445 677777777776666665 2223333 666777777777777666554 3667777766
Q ss_pred HHHHHHHHhh
Q 029105 165 RQTALHLVKR 174 (199)
Q Consensus 165 l~~~~~~~~~ 174 (199)
++.+...+|+
T Consensus 261 ~i~l~~~lgk 270 (310)
T 3mv2_B 261 QITLALMQGL 270 (310)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCh
Confidence 6666666665
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.44 E-value=6.4e-13 Score=101.94 Aligned_cols=123 Identities=5% Similarity=-0.126 Sum_probs=105.8
Q ss_pred chhhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHH
Q 029105 32 GLSGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVL 93 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~ 93 (199)
+..+...|+|++|+..+.++ .+|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999888766 67788899999999999999999999999999865 3444 578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
+.++|.+|..+|++++|+..+++++.+ +|.......+++.++..++.+++|...|.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999976 3555567789999999999999999999988654
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.42 E-value=3.5e-12 Score=76.70 Aligned_cols=77 Identities=25% Similarity=0.357 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcccccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHH
Q 029105 95 EQKAQVLLELGDAWNALKAATRATELEQSWAE-AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEAR--DDRQTALHL 171 (199)
Q Consensus 95 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~ 171 (199)
+.+|.++...|++++|+..+++++..+|+++. +++.+|.++..+|++++|+..|++++.++|+++.++ ..++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 83 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF 83 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999 999999999999999999999999999999999887 444444433
No 195
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.38 E-value=1.7e-11 Score=78.58 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=90.7
Q ss_pred ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcc-c-ccHHHHHHHHHHHHhcCChHHHH
Q 029105 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELG---DAWNALKAATRATELE-Q-SWAEAWITLGRAQLNFGEPDKAI 145 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~A~ 145 (199)
+....+.+.|.+.+..+|.+..+.+++|.++.+.+ +.++++..++.+++.+ | ++.+++|++|..++++|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566778888888888999999999999999988 6779999999999998 7 67899999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 146 ESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
.+++++++++|++..+......+....
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887777666554
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.36 E-value=2.6e-11 Score=87.25 Aligned_cols=137 Identities=12% Similarity=-0.006 Sum_probs=109.4
Q ss_pred hhhccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 44 NNEHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--ENAVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 44 A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
|+..+++. ..+....++..+|.++...|++++|+.++.+++..+| ++..++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555544 2223355567999999999999999999999999987 8899999999999999999999999999999
Q ss_pred cccc----cHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 120 LEQS----WAEAWITL--GRAQLNFG--EPDKAIESFERALAIKPD--SEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 120 ~~p~----~~~~~~~l--g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
.+|+ +-.....+ |.+....| ++++|...|+++....|+ .+..+.+ ++..+|++++|.....
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9983 22334444 44466666 999999999999888887 3344444 8999999999988764
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=5.6e-12 Score=95.22 Aligned_cols=157 Identities=10% Similarity=-0.009 Sum_probs=114.4
Q ss_pred hcchhhhhccchhhhhhccccc-------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF-------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN 90 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 90 (199)
+.|..+...|+|++|++.|..+ ..+....++..+|.+|...|++++|++.+.+++...+..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4567777888888888877655 112334567888888888888888888888887765443
Q ss_pred H------HHHHHHHHHHHHcCCHHHHHHHHHHHhhccc------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 029105 91 A------VLHEQKAQVLLELGDAWNALKAATRATELEQ------SWAEAWITLGRAQLNFGEPDKAIESFERALAI---- 154 (199)
Q Consensus 91 ~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 154 (199)
. .+...+|.++...|+++.|+..+++++...+ ....++..+|.++...|++++|+..+++++..
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 2 3456677777778888888888888877643 23567788888888888888888888887765
Q ss_pred --CCCcHHHHHHHHHHHHHHhhhhhhhhhccccc
Q 029105 155 --KPDSEEARDDRQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 155 --~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
.+....++..++.++...|++++|...+..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 23345678888888888888888776654443
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.35 E-value=2.4e-11 Score=72.27 Aligned_cols=73 Identities=16% Similarity=0.026 Sum_probs=64.9
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH
Q 029105 87 RPENAVLHEQKAQVLLELGD---AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE 159 (199)
Q Consensus 87 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 159 (199)
+|+++.++..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68889999999999987666 78999999999999999999999999999999999999999999999988843
No 199
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.34 E-value=1.3e-11 Score=92.55 Aligned_cols=144 Identities=11% Similarity=-0.014 Sum_probs=92.7
Q ss_pred hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 108 (199)
..+|..++..|.|++|...|..+ ..+..+|.++.+.|++++|++.++++ +++..|...+.++...|+++
T Consensus 126 ~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 126 QQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHH
Confidence 44566666666666666666533 34556666666666666666666666 34566666666666666666
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--Hhhhhhhhhhccccc
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL--VKRRKHLHLSGLSND 186 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 186 (199)
.|..+... +..+|++ ...+..+|...|++++|+..+++++.+++.+..++..++.++.+ .++..+..+.++++.
T Consensus 195 lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 195 LAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 66555554 2244544 33577889999999999999999999999999999999988875 456666666666554
Q ss_pred c
Q 029105 187 A 187 (199)
Q Consensus 187 ~ 187 (199)
.
T Consensus 271 n 271 (449)
T 1b89_A 271 N 271 (449)
T ss_dssp C
T ss_pred c
Confidence 3
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=6.4e-12 Score=94.87 Aligned_cols=163 Identities=10% Similarity=-0.063 Sum_probs=131.5
Q ss_pred hhhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC------CcHHH
Q 029105 28 DQEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP------ENAVL 93 (199)
Q Consensus 28 ~~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~ 93 (199)
..++|.++...|++++|+..+..+ .......+...++.++...|++++|+..+++++...+ ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 357899999999999999998877 1122344666788888899999999999999887532 33678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---Cc----HH
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATEL------EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP---DS----EE 160 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~----~~ 160 (199)
+..+|.++...|+|++|+..+++++.. .+....++..+|.+|..+|++++|...+++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 999999999999999999999999876 345677899999999999999999999999997743 22 34
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccccchhh
Q 029105 161 ARDDRQTALHLVKRRKHLHLSGLSNDANRF 190 (199)
Q Consensus 161 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 190 (199)
.+..+|.++...+++.+|...+...++..-
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 567778888888889998887766655433
No 201
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.33 E-value=2.1e-11 Score=101.90 Aligned_cols=142 Identities=10% Similarity=-0.018 Sum_probs=104.8
Q ss_pred cchhhhhccchhhhhhccccc------------------------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 31 HGLSGAELEKNDDNNEHQEPF------------------------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
.|.++...|.+++|...|+++ ...+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 467777777777777766665 12234667888888888889999999888775
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc---------------------------cHHHHHHHHHHHHhcC
Q 029105 87 RPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS---------------------------WAEAWITLGRAQLNFG 139 (199)
Q Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------------------~~~~~~~lg~~~~~~~ 139 (199)
+++..+...|.++.+.|+|++|++++..+....++ +...+..+|..+...|
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 67888888888888899999888888776654422 2234567788888888
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 140 EPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++++|..+|.++ ..|..++.++..+|++++|...+..+
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 888888888775 46777777888888777777666433
No 202
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.31 E-value=1.9e-12 Score=97.08 Aligned_cols=79 Identities=15% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
..|..+|..++..|.|++|..+|.++ ..|..+|.++..+|++++|++.++++ .++.+|..+..++..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 46677777777777777777777766 35677777777778888787777777 356777777777777
Q ss_pred Hhhhhhhhhhcc
Q 029105 172 VKRRKHLHLSGL 183 (199)
Q Consensus 172 ~~~~~~a~~~~~ 183 (199)
.|+++.|....+
T Consensus 190 ~~ef~lA~~~~l 201 (449)
T 1b89_A 190 GKEFRLAQMCGL 201 (449)
T ss_dssp TTCHHHHHHTTT
T ss_pred cCcHHHHHHHHH
Confidence 777777655444
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.30 E-value=3.3e-11 Score=77.20 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=97.8
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHh----cCChHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLN----FGEPDKAI 145 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~ 145 (199)
.+++++|+.+|+++.+....... +|.+|...+.+++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35789999999999988754443 999999999999999999999987 778999999999998 89999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH----Hhhhhhhhhhcccccch
Q 029105 146 ESFERALAIKPDSEEARDDRQTALHL----VKRRKHLHLSGLSNDAN 188 (199)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 188 (199)
.+|+++.+. .++.+..+|+.+|.. .+++++|...+..+.+.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999986 679999999999999 88999988877766553
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.26 E-value=1.5e-10 Score=96.93 Aligned_cols=141 Identities=12% Similarity=0.009 Sum_probs=114.5
Q ss_pred hHhhhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCC----------------
Q 029105 26 QQDQEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPE---------------- 89 (199)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------------- 89 (199)
...+++|..+...|++++|+..|.++ +++..+..+|.++.+.|+|++|+++|..+....++
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 34468899999999999999999886 45667888999999999999999999887655432
Q ss_pred -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 029105 90 -----------NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 90 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 158 (199)
+...+..+|..+...|+|++|+.+|.++ ..|..+|.++..+|++++|++.++++ .+
T Consensus 1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n 1249 (1630)
T 1xi4_A 1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS 1249 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CC
Confidence 1234567999999999999999999986 47899999999999999999999998 44
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 159 EEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
..+|...+.++...|++..|....
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 566776666666666666665544
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.26 E-value=1.1e-10 Score=88.36 Aligned_cols=114 Identities=17% Similarity=0.096 Sum_probs=92.4
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccc
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHEQKAQVLLELGDAWNALKAATRATEL--------EQS 123 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~ 123 (199)
.......+..+|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ +|.
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 334445567889999999999999975 3444 478899999999999999999999999976 455
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHHHh
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERALAI-----KPDSEE---ARDDRQTALHLVK 173 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~ 173 (199)
....++++|.+|..+|++++|+..|++++++ .|+++. +..+|+.+...++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 6678999999999999999999999999976 566665 4556666665543
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.24 E-value=2.3e-10 Score=69.58 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELE-------QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARD 163 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 163 (199)
+.-.+.+|..++..|+|..|+.+++.|+... +..+.++..+|.++..+|+++.|+..+++++.++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445677777777777777777777777653 235667778888888888888888888888888888877777
Q ss_pred HHHHH
Q 029105 164 DRQTA 168 (199)
Q Consensus 164 ~l~~~ 168 (199)
+++..
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 77633
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.21 E-value=3.4e-10 Score=85.64 Aligned_cols=95 Identities=21% Similarity=0.192 Sum_probs=81.8
Q ss_pred HhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------ccccHHHHHHH
Q 029105 68 AEDGKFREALGKWEAALNL-----RPEN---AVLHEQKAQVLLELGDAWNALKAATRATEL--------EQSWAEAWITL 131 (199)
Q Consensus 68 ~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 131 (199)
...|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ +|+-...+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4568899999999999874 4555 467899999999999999999999999976 45666789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc-----CCCcHHHH
Q 029105 132 GRAQLNFGEPDKAIESFERALAI-----KPDSEEAR 162 (199)
Q Consensus 132 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 162 (199)
|.+|..+|++++|+..|++++.+ .|+++.+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999986 57777543
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.19 E-value=3.8e-10 Score=68.60 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=69.9
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLR-------PENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
++..++.+|..++..|+|..|+.+|++++... +..+.++..+|.+++++|+++.|+..+++++.++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35678899999999999999999999999863 34578999999999999999999999999999999999998
Q ss_pred HHHH
Q 029105 129 ITLG 132 (199)
Q Consensus 129 ~~lg 132 (199)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8887
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.19 E-value=8.4e-11 Score=69.89 Aligned_cols=72 Identities=18% Similarity=-0.024 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHhhHHHhccc---HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 029105 53 AKQLALSFEAQGNNLAEDGK---FREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSW 124 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 124 (199)
+|.++.++..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57789999999999987666 7999999999999999999999999999999999999999999999999874
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.17 E-value=3e-10 Score=83.27 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=85.9
Q ss_pred chHhhhcchhhhhcc---chhhhhhccccc--chhhHHHHHHHHhhHHHhcccH-------HHHHH-HHH--HHHccCCC
Q 029105 25 DQQDQEHGLSGAELE---KNDDNNEHQEPF--DAKQLALSFEAQGNNLAEDGKF-------REALG-KWE--AALNLRPE 89 (199)
Q Consensus 25 ~~~~~~~g~~~~~~~---~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~A~~-~~~--~~l~~~~~ 89 (199)
....+-.|..+...+ ...+|+..|+++ .+|+.+.++..++.++.....+ ..++. .+. .++..+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 333444455555433 346677777777 6777777777666666422111 11111 111 12355677
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 7777777777777778888888888888888764 556777788888888888888888888888887653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.06 E-value=3.3e-09 Score=77.80 Aligned_cols=129 Identities=11% Similarity=-0.007 Sum_probs=100.1
Q ss_pred HHHHHHhhHHHhc---ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCH-------HHHH-HHHH--HHhhccccc
Q 029105 58 LSFEAQGNNLAED---GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDA-------WNAL-KAAT--RATELEQSW 124 (199)
Q Consensus 58 ~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~-------~~A~-~~~~--~al~~~p~~ 124 (199)
.-++..|..++.. ..+.+|+.+|+++++++|+++.++..++.++.....+ ..++ ..++ .++..+|.+
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~ 276 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL 276 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence 3445566666654 4568999999999999999999999888888632111 1111 1111 234567899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSNDA 187 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 187 (199)
+.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|++++|...+..++.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999975 67889999999999999999987765544
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.05 E-value=7.2e-10 Score=71.08 Aligned_cols=83 Identities=14% Similarity=-0.102 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHhhHHHhcc---cHHHHHHHHHHHHccC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH
Q 029105 53 AKQLALSFEAQGNNLAEDG---KFREALGKWEAALNLR-P-ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA 127 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~l~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 127 (199)
.+.+.++.+.+|.++.+.+ ++.+++..++.+++.+ | .+.++++++|..+++.|+|++|+.+++++++++|++..+
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4567889999999999988 7779999999999998 7 568999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 029105 128 WITLGRAQ 135 (199)
Q Consensus 128 ~~~lg~~~ 135 (199)
....-.+-
T Consensus 108 ~~Lk~~ie 115 (152)
T 1pc2_A 108 KELERLID 115 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77655443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.05 E-value=7.3e-10 Score=83.86 Aligned_cols=105 Identities=12% Similarity=-0.008 Sum_probs=84.2
Q ss_pred hhhhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHH
Q 029105 34 SGAELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHE 95 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~ 95 (199)
.+...|+|++|+..+.++ .+|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 345678888888877654 67778889999999999999999999999999865 3444 47789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhc-----cccc---HHHHHHHHHHHHhc
Q 029105 96 QKAQVLLELGDAWNALKAATRATEL-----EQSW---AEAWITLGRAQLNF 138 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~ 138 (199)
++|.+|..+|++++|+..+++++.+ -|++ ..+..+++.+...+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 2444 44556677666543
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.03 E-value=9e-09 Score=72.78 Aligned_cols=107 Identities=20% Similarity=0.160 Sum_probs=90.0
Q ss_pred chhhHHHHHHHHhhHHHh-----c------ccHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHc-----CCHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAE-----D------GKFREALGKWEAALNLRPE--NAVLHEQKAQVLLEL-----GDAWNALKA 113 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~-----~------~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~-----~~~~~A~~~ 113 (199)
..|.++..++-.|.+... . +....|...++++++++|+ +..+|..+|.+|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 345666666655554422 1 3457899999999999999 677999999999995 999999999
Q ss_pred HHHHhhccccc-HHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCc
Q 029105 114 ATRATELEQSW-AEAWITLGRAQLN-FGEPDKAIESFERALAIKPDS 158 (199)
Q Consensus 114 ~~~al~~~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~ 158 (199)
|+++++++|+. ..+++..|..+.. .|++++|...+++++..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 599999999999999998874
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.01 E-value=1.2e-09 Score=82.60 Aligned_cols=92 Identities=10% Similarity=-0.041 Sum_probs=77.7
Q ss_pred hhccchhhhhhccccc----------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCc---HHHHHHH
Q 029105 36 AELEKNDDNNEHQEPF----------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPEN---AVLHEQK 97 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~---~~~~~~l 97 (199)
...|+|++|+..+.++ .+|....++.++|.+|..+|+|++|+.++++++.+ .|++ ...++++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3467888888887765 67788889999999999999999999999999965 3444 5778999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc-----ccccHHH
Q 029105 98 AQVLLELGDAWNALKAATRATEL-----EQSWAEA 127 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 127 (199)
|.+|..+|++++|+..+++|+.+ .|++|..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999999987 3555543
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.98 E-value=4.3e-08 Score=60.70 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=86.6
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcc-c-ccHHHHHHHHHHHHhcCChHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN---ALKAATRATELE-Q-SWAEAWITLGRAQLNFGEPDKA 144 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~A 144 (199)
......+...|.+.+..++....+.+++|.++.+...... ++..++..+..+ | ..-+.++.+|..++++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445667777888777788889999999999999887766 999999999987 6 5778999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 145 IESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
..+++.+++.+|++.++......+..+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999987766655544
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.92 E-value=1e-08 Score=81.68 Aligned_cols=155 Identities=9% Similarity=-0.038 Sum_probs=106.4
Q ss_pred chhhhhccchhhhh-hccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-----------CC--------
Q 029105 32 GLSGAELEKNDDNN-EHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR-----------PE-------- 89 (199)
Q Consensus 32 g~~~~~~~~~~~A~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------~~-------- 89 (199)
+..+...|+.++|. ..+.++ ..|.....+...+......|+++.|...|++++... |.
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 33444556666665 666666 446666677777777777788888888888777642 32
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105 90 ---NAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKPDSEEARDD 164 (199)
Q Consensus 90 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 164 (199)
...+|...+.+..+.|..+.|...|.+|+.. .+.....|...|.+....+ +++.|...|+.+++..|+++..+..
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~ 509 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 2346777777777777788888888888776 3344566666666665554 4788888888888888888888777
Q ss_pred HHHHHHHHhhhhhhhhhccccc
Q 029105 165 RQTALHLVKRRKHLHLSGLSND 186 (199)
Q Consensus 165 l~~~~~~~~~~~~a~~~~~~~~ 186 (199)
.+......|+.+.|...+-.+.
T Consensus 510 y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777777777665554433
No 218
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.79 E-value=5.8e-08 Score=77.41 Aligned_cols=152 Identities=9% Similarity=-0.083 Sum_probs=124.1
Q ss_pred cchhhhhccchhhhhhcccccch-------------h-----------hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 31 HGLSGAELEKNDDNNEHQEPFDA-------------K-----------QLALSFEAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~~~-------------~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
.+......|+++.|...|.++.. | ....+|...+....+.|+.+.|...|.+++..
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666678889888888887721 2 24457888888888999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---cHHH
Q 029105 87 -RPENAVLHEQKAQVLLELGD-AWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD---SEEA 161 (199)
Q Consensus 87 -~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 161 (199)
.+....+|...+.+....++ ++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+ ...+
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~l 543 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMI 543 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44556777777877777654 999999999999999999999999999999999999999999999999883 5567
Q ss_pred HHHHHHHHHHHhhhhhhhhhc
Q 029105 162 RDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 162 ~~~l~~~~~~~~~~~~a~~~~ 182 (199)
|..........|..+.+....
T Consensus 544 w~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 544 FQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 777777777778777665543
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.67 E-value=1.3e-07 Score=66.87 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=84.3
Q ss_pred ccCCCcHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHhhcccc--cHHHHHHHHHHHHhc-----CChHHHHH
Q 029105 85 NLRPENAVLHEQKAQVLLE---L--GD------AWNALKAATRATELEQS--WAEAWITLGRAQLNF-----GEPDKAIE 146 (199)
Q Consensus 85 ~~~~~~~~~~~~la~~~~~---~--~~------~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----~~~~~A~~ 146 (199)
..+|+++..++..|..... . |. ...|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3467778888888877654 2 32 57889999999999999 677999999999995 99999999
Q ss_pred HHHHHHhcCCCc-HHHHHHHHHHHHHH-hhhhhhhhhccccc
Q 029105 147 SFERALAIKPDS-EEARDDRQTALHLV-KRRKHLHLSGLSND 186 (199)
Q Consensus 147 ~~~~al~~~p~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~~~ 186 (199)
+|+++++++|+. ...+...|..+... |+++++......+.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999975 99999999998874 88888776554443
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.60 E-value=6.9e-07 Score=57.73 Aligned_cols=112 Identities=15% Similarity=0.050 Sum_probs=77.2
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-----
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN---------AVLHEQKAQVLLELGDAWNALKAATRATELEQ----- 122 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----- 122 (199)
..++......++..|.|+.|+.....++.+..++ ..++..+|..++..++|..|...|++++....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666677778888888888877766554322 24778888888888888888888888775421
Q ss_pred --------------------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 029105 123 --------------------SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTAL 169 (199)
Q Consensus 123 --------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 169 (199)
.+.+..+.++.||..++++++|+..++.+ -.....+.+...||..|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 12257788888888899988888877643 22233466666666554
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.52 E-value=2e-06 Score=54.57 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=94.2
Q ss_pred chhhHHHHHHHHhhHHHhcccH------HHHHHHHHHHHccCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKF------REALGKWEAALNLRPEN--------AVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~l~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
..|.+++.|..........|+. +.-++.|++++..-|.. ..+|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4678889999999998888998 88899999999887754 3667777765 5679999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
+.++...+..|...|..-.++|+...|.+.+.+++...|...+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 99888899999999999999999999999999999999987654
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.51 E-value=7.8e-07 Score=55.05 Aligned_cols=81 Identities=14% Similarity=-0.154 Sum_probs=70.5
Q ss_pred hhHHHHHHHHhhHHHhcccHHH---HHHHHHHHHccC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKFRE---ALGKWEAALNLR-P-ENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAW 128 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 128 (199)
+....+.+.+|.++.+..+... ++..++..+..+ | ..-.+++.+|..+++.|+|++|..+++.++++.|++.++.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3567889999999998887766 999999999887 5 4678999999999999999999999999999999999887
Q ss_pred HHHHHH
Q 029105 129 ITLGRA 134 (199)
Q Consensus 129 ~~lg~~ 134 (199)
.....+
T Consensus 112 ~Lk~~i 117 (126)
T 1nzn_A 112 ELERLI 117 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.50 E-value=1.1e-05 Score=50.14 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhccc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 90 NAVLHEQKAQVLLELGDA---WNALKAATRATELEQ-SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
.+...+++|.++.+..+. .+++..++..++.+| ..-+.++.+|..+.++|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 457777888777776654 467888888887777 3567788888888888888888888888888888888876666
Q ss_pred HHHHHHH
Q 029105 166 QTALHLV 172 (199)
Q Consensus 166 ~~~~~~~ 172 (199)
..+..++
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.48 E-value=8.5e-06 Score=63.00 Aligned_cols=148 Identities=7% Similarity=-0.056 Sum_probs=113.9
Q ss_pred hhhhhccchhhhhhccccc----chhhHHHHHHHHhhHHHh---------cccHHHHHHHHHHHHccC-CCcHHHHHHHH
Q 029105 33 LSGAELEKNDDNNEHQEPF----DAKQLALSFEAQGNNLAE---------DGKFREALGKWEAALNLR-PENAVLHEQKA 98 (199)
Q Consensus 33 ~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~l~~~-~~~~~~~~~la 98 (199)
..+.+.|+.++|+..|... ..|+ ...+..+-.++.. .+..+.|.+.|++..... +.+...+..+-
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 5667889999999999877 3333 3344444444433 345788999999876543 23567788899
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhh
Q 029105 99 QVLLELGDAWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEEARDDRQTALHLVKRR 175 (199)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 175 (199)
..+.+.|++++|...+++.... .| +...|..+-..|...|+.++|...|++..... .-+...+..+..++.+.|+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 9999999999999999988765 34 46678888889999999999999999988764 22467788899999999999
Q ss_pred hhhhhhc
Q 029105 176 KHLHLSG 182 (199)
Q Consensus 176 ~~a~~~~ 182 (199)
++|....
T Consensus 192 d~A~~ll 198 (501)
T 4g26_A 192 DKVYKTL 198 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987644
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.46 E-value=3.3e-06 Score=53.14 Aligned_cols=83 Identities=12% Similarity=0.006 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhccc-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 029105 89 ENAVLHEQKAQVLLELGDA---WNALKAATRATELEQ-SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDD 164 (199)
Q Consensus 89 ~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 164 (199)
-.+...+++|.++.+..+. .+++..++..+..+| ..-+.++.+|..++++|+|++|..+.+.+++.+|++.++...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3456667777777765543 456777777777666 355667777777777777777777777777777777776655
Q ss_pred HHHHHHH
Q 029105 165 RQTALHL 171 (199)
Q Consensus 165 l~~~~~~ 171 (199)
...+..+
T Consensus 117 k~~Ie~~ 123 (144)
T 1y8m_A 117 KSMVEDK 123 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.43 E-value=2.8e-05 Score=48.92 Aligned_cols=82 Identities=10% Similarity=-0.115 Sum_probs=70.2
Q ss_pred hhHHHHHHHHhhHHHhcccH---HHHHHHHHHHHccCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHH
Q 029105 54 KQLALSFEAQGNNLAEDGKF---REALGKWEAALNLRPE-NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWI 129 (199)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 129 (199)
...+++.+.+|.++....+. .+++..++..+...|. .-++++.+|..+++.|+|++|..+++.+++..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44678899999999887654 5799999999998884 5689999999999999999999999999999999998876
Q ss_pred HHHHHH
Q 029105 130 TLGRAQ 135 (199)
Q Consensus 130 ~lg~~~ 135 (199)
....+-
T Consensus 116 Lk~~Ie 121 (144)
T 1y8m_A 116 LKSMVE 121 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.40 E-value=6.6e-06 Score=63.48 Aligned_cols=133 Identities=12% Similarity=-0.016 Sum_probs=100.0
Q ss_pred hccccc--chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHH-----------------------
Q 029105 46 EHQEPF--DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQV----------------------- 100 (199)
Q Consensus 46 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~----------------------- 100 (199)
..|+++ ..|..+..|...+..+...|+.+.|...|++++.. |.+...+...+..
T Consensus 200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 344444 34677889999999999999999999999999999 8876555444332
Q ss_pred -----------------HHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcHHHH
Q 029105 101 -----------------LLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG-EPDKAIESFERALAIKPDSEEAR 162 (199)
Q Consensus 101 -----------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~ 162 (199)
..+.++.+.|...|.++ ...+.....|...|.+-...+ +.+.|...|+.+++..|+.+..+
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence 22456788888999999 433335567776676666655 69999999999999999988887
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 029105 163 DDRQTALHLVKRRKHLHL 180 (199)
Q Consensus 163 ~~l~~~~~~~~~~~~a~~ 180 (199)
...+......|+.+.+..
T Consensus 358 ~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 777777777777776553
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.30 E-value=1.2e-05 Score=50.04 Aligned_cols=80 Identities=10% Similarity=-0.118 Sum_probs=68.5
Q ss_pred HHHHHHHHhhHHHhcccH---HHHHHHHHHHHccCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKF---REALGKWEAALNLRPE-NAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITL 131 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 131 (199)
.+.+.+.+|.++.+..+. ..++..++..+..+|. .-++++.+|..+++.|+|+.|..+.+.++++.|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 467888899888887654 5799999999998884 479999999999999999999999999999999999887665
Q ss_pred HHHH
Q 029105 132 GRAQ 135 (199)
Q Consensus 132 g~~~ 135 (199)
..+-
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.02 E-value=4.8e-05 Score=49.21 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccH---------HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C---
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWA---------EAWITLGRAQLNFGEPDKAIESFERALAIK---P--- 156 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p--- 156 (199)
.+++.-...++..|.|+.|+-....++.+..+++ .++..+|.+++..++|..|...|++++... +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4456667778899999999999999887754433 378899999999999999999999987542 1
Q ss_pred -------------------CcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 157 -------------------DSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 157 -------------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
.+.+..+.++.|+..++++++|....
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 11268899999999999999987643
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.98 E-value=0.00023 Score=54.99 Aligned_cols=124 Identities=8% Similarity=-0.118 Sum_probs=96.4
Q ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 57 ALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG-DAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
..+|...+....+.++.+.|...|.++ ...+.....|...|.+-...+ +.+.|..+|+.++...|+.+..|...+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 355666777777788899999999999 433335567777777776666 699999999999999999998888888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 136 LNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
...|+.+.|...|+++ +.....|......-...|+.+.+...+-.+
T Consensus 365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999998 346777777777777777766655434333
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.87 E-value=0.00023 Score=55.02 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=99.0
Q ss_pred cchhhhhhccccc----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 029105 39 EKNDDNNEHQEPF----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR-PENAVLHEQKAQVLLELGDAWNALKA 113 (199)
Q Consensus 39 ~~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (199)
+..++|...|... ..| +...+..+...+.+.|++++|...|++..... ..+...|..+-..+.+.|++++|...
T Consensus 84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 3456677776654 333 45678889999999999999999999987652 23567788888899999999999999
Q ss_pred HHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Q 029105 114 ATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAI--KPDSEEARDDRQTALH 170 (199)
Q Consensus 114 ~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 170 (199)
+++.... .| +...+..+-.++...|+.++|...+++..+. .|+ ..++..+...+.
T Consensus 163 ~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~ 221 (501)
T 4g26_A 163 DAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHh
Confidence 9998865 34 4667888999999999999999999988764 354 444444444443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.83 E-value=0.00023 Score=45.25 Aligned_cols=100 Identities=13% Similarity=-0.072 Sum_probs=81.9
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHhhcccc--------cHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 85 NLRPENAVLHEQKAQVLLELGDA------WNALKAATRATELEQS--------WAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 85 ~~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
-+.|++++.|..........|+. ++-++.|++|+..-|- +...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999888999 8999999999987663 45567777755 567999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 151 ALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 151 al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
++.+....+.+|...|....+.|+...|....-.+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99998888889999999999999998887654433
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.00043 Score=53.30 Aligned_cols=81 Identities=17% Similarity=0.052 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHL 171 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 171 (199)
.++..+|.+......++.|..+|.+|+.+.|+++..+..+|.+....|+.-+|+-+|.+++......+.+..+|...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35677899988899999999999999999999999999999999999999999999999998887788889998888765
Q ss_pred H
Q 029105 172 V 172 (199)
Q Consensus 172 ~ 172 (199)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00074 Score=54.48 Aligned_cols=112 Identities=8% Similarity=0.011 Sum_probs=76.4
Q ss_pred ccc-HHHHHHHHHHHHccCCCcHHHHHHHHHHHH--H-cCCHHHHHHHHHHHhhc--------c----------cccHHH
Q 029105 70 DGK-FREALGKWEAALNLRPENAVLHEQKAQVLL--E-LGDAWNALKAATRATEL--------E----------QSWAEA 127 (199)
Q Consensus 70 ~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~--~-~~~~~~A~~~~~~al~~--------~----------p~~~~~ 127 (199)
.++ ++.|+..+++....+|.....+ ..+.+.. . ..+=-+|++.+.+++.. . |.....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 5778999999888888764432 2222221 1 12334566666666531 1 112234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
+..-+..+...|+++-|+.+-++++...|.....|..|+.||..+|+++.|.-..
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 4555666778899999999999999999999999999999999999999887533
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.52 E-value=0.0044 Score=46.33 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=76.1
Q ss_pred HHHHhhHHHhcccHHHHHHHHHHHHccCCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 60 FEAQGNNLAEDGKFREALGKWEAALNLRPEN----------------------AVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 60 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
+...|......|+.+.|...+.+++.+.... ..+...++..+...|++.+++..+..+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444556789999999999998874221 023445677788999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 118 TELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 118 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
+..+|-+-.++..+-.++...|+..+|+..|+++.+
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988754
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00073 Score=54.50 Aligned_cols=81 Identities=25% Similarity=0.300 Sum_probs=64.9
Q ss_pred ccHHHHHHHHHHHHcc--------CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHH
Q 029105 71 GKFREALGKWEAALNL--------RPEN----------AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLG 132 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~--------~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 132 (199)
.+--+|+....+.++. .+.+ ...+...+..+...|+|+-|+.+.++++...|.....|+.|+
T Consensus 299 ~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La 378 (754)
T 4gns_B 299 TKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLA 378 (754)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 3455677777776632 2222 235566688888899999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 029105 133 RAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~a 151 (199)
.||..+|+++.|+-.+.-+
T Consensus 379 ~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 379 RCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccHHHHHHHHhcC
Confidence 9999999999999776655
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.44 E-value=0.0015 Score=50.26 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=68.8
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQL 136 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 136 (199)
..+..+|.+......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+.+|.+++......+.+..++...+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999998876556666666666554
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.29 E-value=0.013 Score=38.27 Aligned_cols=105 Identities=13% Similarity=-0.028 Sum_probs=76.3
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--c---------
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE--L--------- 120 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~--------- 120 (199)
..|..++.-..++..++-.|.+..++-.+.. -+.....+.-+.|+.+.++|..|+.+++..++ .
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 3444556666778888889999888765532 24466777888899999999999999999883 2
Q ss_pred ------ccccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 121 ------EQSWAE-AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 121 ------~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
+|.+-+ .+..+|.++...|+.++|+.+|.......|-.+.+
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 233333 35567889999999999999999888887765543
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.27 E-value=0.009 Score=41.92 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE 126 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 126 (199)
.+++.|+.++|+......++.+|.+......+-..++-.|+|+.|..-++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567888999999999999999999998888899999999999999999999999887654
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.18 E-value=0.0064 Score=45.40 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=41.0
Q ss_pred HHhhHHHhcccHHHHHHHHHHHHccCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc---c----cHHHH
Q 029105 62 AQGNNLAEDGKFREALGKWEAALNLRPE--N----AVLHEQKAQVLLELGDAWNALKAATRATELEQ---S----WAEAW 128 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~ 128 (199)
.+|..|+..|+|.+|.+.+.+....... + ..++.....++...+++.++...+.++..... . .+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3455555555555555555544432111 0 23344444455555555555555555443310 1 11223
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHH
Q 029105 129 ITLGRAQL-NFGEPDKAIESFERAL 152 (199)
Q Consensus 129 ~~lg~~~~-~~~~~~~A~~~~~~al 152 (199)
..-|..++ ..++|..|...|-+++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33444555 4555555555555554
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.05 Score=44.20 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=32.2
Q ss_pred HHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 67 LAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 67 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
....|++++|.+..+. .++...|..+|..+.+.++++.|+.+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4566777777765432 245677778888888888888888777765
No 242
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0059 Score=46.97 Aligned_cols=142 Identities=12% Similarity=-0.044 Sum_probs=69.9
Q ss_pred hhccchhhhhhccccc-------------chhhHHHHHHHHhhHHHhcccHHHHH----------HHHHHHHc-----cC
Q 029105 36 AELEKNDDNNEHQEPF-------------DAKQLALSFEAQGNNLAEDGKFREAL----------GKWEAALN-----LR 87 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~A~----------~~~~~~l~-----~~ 87 (199)
+..+++++|....... .++-.+.+|+.++.++...|+..... ..+-.+++ .+
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 3456666666543322 34445667777777777777665432 12222222 12
Q ss_pred CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcH--
Q 029105 88 PE-NAVLHEQKAQVLLELGDAWNALKAATRATELEQ-----SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSE-- 159 (199)
Q Consensus 88 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-- 159 (199)
+. ...++..+-..|...+.|++|.....++.-... .....++.+|.++..+++|.+|..++..|++..|.+.
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Confidence 22 257788899999999999999999999853211 1245678899999999999999999999999887542
Q ss_pred -----HHHHHHHHHHHHHhhhhh
Q 029105 160 -----EARDDRQTALHLVKRRKH 177 (199)
Q Consensus 160 -----~~~~~l~~~~~~~~~~~~ 177 (199)
.++..+..+-..+|+..+
T Consensus 307 ~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHHhHHhhcCCCCC
Confidence 234445555556777554
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.58 E-value=0.068 Score=44.82 Aligned_cols=100 Identities=4% Similarity=-0.186 Sum_probs=80.7
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--ccccHHHH
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL----RPENAVLHEQKAQVLLELGDAWNALKAATRATEL--EQSWAEAW 128 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 128 (199)
.....+..+-..+.+.|+.++|...|...-+. ...+...|..+-..+.+.|++++|.+.|++.... .|+ ...|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHH
Confidence 34456888999999999999999999765432 2335788899999999999999999999998765 454 6677
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhcC
Q 029105 129 ITLGRAQLNFGEP-DKAIESFERALAIK 155 (199)
Q Consensus 129 ~~lg~~~~~~~~~-~~A~~~~~~al~~~ 155 (199)
..+-.++.+.|+. ++|...|++.....
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7777788888985 78899999988764
No 244
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.53 E-value=0.08 Score=34.59 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=72.8
Q ss_pred hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH--cc---------------CCCcH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAAL--NL---------------RPENA 91 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~---------------~~~~~ 91 (199)
+-++.+++-.|+|..++..+... +...+.+..+.|+....++..|+.+++..+ .. +|.+.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l---NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk 113 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL---NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE 113 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC---CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred hhhhhhhhhcchHhHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence 34577888889999988877654 235677888999999999999999999998 22 23343
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 92 -VLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 92 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
..+..+|.++.+.|+.++|+.++......+|-
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 45677899999999999999999887776553
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.46 E-value=0.039 Score=47.06 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=71.9
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----------------------c
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-----------------------Q 122 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------------p 122 (199)
.+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++...- .
T Consensus 821 ~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 3444555544433 334456666666778888888888888888887763210 0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-cH----HHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD-SE----EARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 123 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~----~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
..+..++.+..++...|.++.+++..+.|+...+. +. ..|.++-..+..+|+|++|..+..
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 11234556666777778888888888877766543 22 256666777777888888765443
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.41 E-value=0.037 Score=38.88 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=57.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 100 VLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 100 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
.+++.|+.++|++.....++.+|.+......+...+.-.|+++.|...++.+.+++|.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 35678999999999999999999999999999999999999999999999999999987543
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.034 Score=45.17 Aligned_cols=43 Identities=30% Similarity=0.285 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 029105 103 ELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFER 150 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 150 (199)
..|++++|.+..+. .+++..|..+|..+...|+++.|+.+|.+
T Consensus 664 ~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 664 KVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555444321 12334455555555555555555555544
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.051 Score=41.16 Aligned_cols=99 Identities=12% Similarity=-0.013 Sum_probs=78.2
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc--cc----HHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPE---NAVLHEQKAQVLLELGDAWNALKAATRATELEQ--SW----AEAW 128 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~ 128 (199)
.++..+|..++..|+++.|.+.|.++...... -...+.....++...+++..+...+.++..... .+ ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678999999999999999999998765332 357788888889999999999999999876521 12 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105 129 ITLGRAQLNFGEPDKAIESFERALAIKP 156 (199)
Q Consensus 129 ~~lg~~~~~~~~~~~A~~~~~~al~~~p 156 (199)
...|.++...++|.+|-..|..++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 5667888899999999999988876543
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.38 E-value=0.11 Score=38.82 Aligned_cols=113 Identities=11% Similarity=-0.082 Sum_probs=70.9
Q ss_pred hcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccC---CCc----HHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLR---PEN----AVLH 94 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~----~~~~ 94 (199)
.+|..++..|+|.+|...+.+. ......+++.....++...+++.++...+.++.... +.+ +.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5577777888888887766555 123445667777777788888888887777765432 122 2445
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCChH
Q 029105 95 EQKAQVLL-ELGDAWNALKAATRATELE-----QSWAEAWITLGRAQLNFGEPD 142 (199)
Q Consensus 95 ~~la~~~~-~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~ 142 (199)
..-|..+. ..++|..|...|-+++.-. |....+...++.|-.-.++..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~ 237 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSD 237 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHH
Confidence 55677777 7888888888777776432 222234445555666655543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.35 E-value=0.021 Score=42.68 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=56.5
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
.+...++..+...|++.+|+..+.+++..+|.+..++..+..++...|+..+|+..|+++-+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567788889999999999999999999999999999999999999999999999887653
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.23 Score=37.80 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=75.1
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-C-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---cccc-
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL-R-PEN----AVLHEQKAQVLLELGDAWNALKAATRATEL---EQSW- 124 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~-~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~- 124 (199)
..+.....++.++...|++.+|...+.....- . ..+ ..++.....++...+++.+|...+.++... .+.+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 35666778899999999999999998886532 1 111 467778888899999999999988886431 2222
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 125 ---AEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 125 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
...+...|..+...++|.+|-.+|.+++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 235567788889999999999999888764
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.084 Score=40.20 Aligned_cols=92 Identities=10% Similarity=-0.028 Sum_probs=74.4
Q ss_pred hhcchhhhhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc---cCCCc----HHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN---LRPEN----AVL 93 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~----~~~ 93 (199)
..++.++...|++.+|....... ....-.+.+.....++...+++..|...++++.. ..+.+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45688999999999999877665 4445678888999999999999999999988632 22333 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
+...|..+...++|.+|-.+|..++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788899999999999999999998864
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.94 E-value=0.11 Score=44.39 Aligned_cols=123 Identities=11% Similarity=-0.054 Sum_probs=88.1
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHccC-----------------------CCcHHHHHHHHHHHHHcCCHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALNLR-----------------------PENAVLHEQKAQVLLELGDAWNALK 112 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----------------------~~~~~~~~~la~~~~~~~~~~~A~~ 112 (199)
++...+.+|.++...|++++|..+|+++..-- ...+..|.....++.+.+.++.+++
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456889999999999999999999873211 1113566777888889999999999
Q ss_pred HHHHHhhccc-ccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 029105 113 AATRATELEQ-SWA----EAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLH 179 (199)
Q Consensus 113 ~~~~al~~~p-~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 179 (199)
..+.|++..+ ++. ..|.++=..+...|+|++|...+...-.. .....++..|....+..|+.++..
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCChhhhh
Confidence 9999997643 222 25777778889999999998777544222 223556666666666666655543
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.23 Score=32.60 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=51.9
Q ss_pred hhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 029105 35 GAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAA 114 (199)
Q Consensus 35 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (199)
..+.|+++.|.+..... ++...|..+|......|+++-|..+|.++-. +..+..+|.-.|+.+.-....
T Consensus 15 AL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455666665554332 2344566666666666666666666665421 122233333445544433333
Q ss_pred HHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 029105 115 TRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERA 151 (199)
Q Consensus 115 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 151 (199)
+.+..... +.....+++.+|+++++++.|.+.
T Consensus 84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 33322211 122345567788888888887654
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.54 E-value=0.2 Score=42.10 Aligned_cols=87 Identities=3% Similarity=-0.214 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHHHHHHH
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATEL-----EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEEARDDR 165 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 165 (199)
..+..+-..+.+.|+.++|...+...... .| +...|..+-..|.+.|+.++|.+.|++..... .-+...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56788889999999999999999775433 34 56789999999999999999999999998764 2347778888
Q ss_pred HHHHHHHhhh-hhhh
Q 029105 166 QTALHLVKRR-KHLH 179 (199)
Q Consensus 166 ~~~~~~~~~~-~~a~ 179 (199)
..++.+.|+. ++|.
T Consensus 207 I~glcK~G~~~e~A~ 221 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIE 221 (1134)
T ss_dssp HHHHHHHTCCHHHHH
T ss_pred HHHHHhCCCcHHHHH
Confidence 8888888875 4443
No 256
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.13 Score=33.77 Aligned_cols=49 Identities=20% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
.....|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 345789999999887765 5688899999999999999999999988743
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.067 Score=40.52 Aligned_cols=92 Identities=10% Similarity=-0.109 Sum_probs=73.9
Q ss_pred hhcchhhhhccchhhhhhccccc-----chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCC--Cc----HHHHHHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPF-----DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRP--EN----AVLHEQK 97 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~----~~~~~~l 97 (199)
..+|..++..|++++|.+.|.+. ........+..+..++...++|..+...+.++-.... .+ ..+....
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 56789999999999999999887 3345678889999999999999999999999865421 22 2455667
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhc
Q 029105 98 AQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~ 120 (199)
|..+...++|..|...|-.++..
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 88888899999999999887754
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.24 E-value=0.21 Score=39.73 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=77.3
Q ss_pred chhhhhccchhhhhhccccc------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcC
Q 029105 32 GLSGAELEKNDDNNEHQEPF------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELG 105 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 105 (199)
+.......+.+.|...+... ...........++......+...++...+.+.....+++.. ...++......|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCC
Confidence 44444445566666665443 22222333444554555555455666777776554443333 334444455679
Q ss_pred CHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 106 DAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
++..|...+.+.-...+..+...|-+|.++..+|+.++|...|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999877665556677888899999999999999999988875
No 259
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=94.19 E-value=2.1 Score=36.01 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred HhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc------------------c--
Q 029105 63 QGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE------------------Q-- 122 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------p-- 122 (199)
+...+...|.++-| ...+...|.++..-+.+|.++...|++++|..+|++|-.-- |
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 44555666776654 34667788888888999999999999999999998876310 0
Q ss_pred ---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcHH
Q 029105 123 ---SWAEAWITLGRAQLNFGEPDKAIESFERALAIK-PDSEE 160 (199)
Q Consensus 123 ---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 160 (199)
.....|.....++...+.++-++...+.|+..- ++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 012356778888889999999999999999654 45544
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.56 E-value=1.5 Score=31.70 Aligned_cols=114 Identities=9% Similarity=-0.052 Sum_probs=65.4
Q ss_pred hhccchhhhhhccccc--------chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHH
Q 029105 36 AELEKNDDNNEHQEPF--------DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVLL 102 (199)
Q Consensus 36 ~~~~~~~~A~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~ 102 (199)
...|+|=+|...++.. ...+-.+.++.-+..+...|++..|.+...-.++. .|-+......+..++.
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445665665555444 23344556666777777777777766654333322 2223444455555554
Q ss_pred HcCCHH-HHHHHHHHHhhc-------ccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 029105 103 ELGDAW-NALKAATRATEL-------EQSWAEAWITLGRAQLNFGEPDKAIESFE 149 (199)
Q Consensus 103 ~~~~~~-~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 149 (199)
....-+ .=....++++.- .-.++..|..+|..+...|++.+|..+|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432211 112333444432 22578899999999999999999988774
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.2 Score=38.78 Aligned_cols=71 Identities=13% Similarity=-0.041 Sum_probs=58.9
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccccc
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPEN-------AVLHEQKAQVLLELGDAWNALKAATRATELEQSW 124 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 124 (199)
+....+..+..+-+.|...+.+++|.....++. .|.. ...++.+|.++.-+++|.+|.+++..|++..|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 344567788889999999999999999999985 3422 4667889999999999999999999999987743
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.09 E-value=0.82 Score=36.39 Aligned_cols=122 Identities=13% Similarity=-0.116 Sum_probs=77.0
Q ss_pred HhhHHHhcccHHHHHHHHHHHHccCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhc
Q 029105 63 QGNNLAEDGKFREALGKWEAALNLRPENA----VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNF 138 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 138 (199)
.+...+...+.+.|...+.......+-+. ..+..++.-+...+...++...+.+.....+++.......+. ....
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHHC
Confidence 34444555678888888877654332222 222333333334453557777777766554443333333343 4567
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 029105 139 GEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGLSN 185 (199)
Q Consensus 139 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 185 (199)
|+++.|..+|..+-......+...+.+|.++...|+.++|...+...
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998765544456778899999999999999887755433
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.86 E-value=3.6 Score=30.02 Aligned_cols=94 Identities=9% Similarity=-0.012 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhhcc
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL-----RPENAVLHEQKAQVLLELGD--------AWNALKAATRATELE 121 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~ 121 (199)
+-.+.++.-+..+.+.|+...|.+...-.++. -|-+......+..++..... .++|+.+-.+.=...
T Consensus 53 eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~ 132 (336)
T 3lpz_A 53 AAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYP 132 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCC
Confidence 34455556666666666666655544322221 11223344445555444333 122333332211112
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 122 QSWAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 122 p~~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
-.++..+..+|..|.+.+++.+|...|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 257888889999999888888887776
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.92 E-value=2.5 Score=26.68 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHHccCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 70 DGKFREALGKWEAALNLRPENAVLHEQKA-QVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 70 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
.|+...-+.+|-+. +.. .. +..+| ..+..+|+-++-.+.+...+...+-+|+.++.+|.+|.+.|+..+|.+.+
T Consensus 74 C~NlKrVi~C~~~~---n~~-se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTL-NE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CSCTHHHHHHHHHT---TCC-CH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cch-HH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 35555555555442 111 12 22333 34556788787777777766666667888999999999999999999888
Q ss_pred HHHHhcC
Q 029105 149 ERALAIK 155 (199)
Q Consensus 149 ~~al~~~ 155 (199)
.+|.+..
T Consensus 149 ~~AC~kG 155 (172)
T 1wy6_A 149 IEACKKG 155 (172)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 8887654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.78 E-value=3.9 Score=27.41 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH--ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAAL--NLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE 121 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 121 (199)
.+|....+|...+... ..+...++...|.-+. .+.-..+..|...|..+...|++.+|..+|+.+++..
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444455555555443 1222334444444433 2334445555556666666666666666666666543
No 266
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=88.54 E-value=1.9 Score=32.87 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHHccCCCc------------H----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcc--------c--cc
Q 029105 71 GKFREALGKWEAALNLRPEN------------A----VLHEQKAQVLLELGDAWNALKAATRATELE--------Q--SW 124 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~~~~~------------~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p--~~ 124 (199)
...+++...+.++....-++ - .....+-.+|++.++..-+...++..-... | .-
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 34567777777776552111 1 233455688899999988887775432221 2 23
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCc
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAI-KPDS 158 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~ 158 (199)
...+|.+|..++..++|.+|...+..|++. .|..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 456788999999999999999999999998 6654
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.40 E-value=2.5 Score=35.59 Aligned_cols=91 Identities=8% Similarity=-0.063 Sum_probs=61.0
Q ss_pred hhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc-CCC----------------------c
Q 029105 34 SGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNL-RPE----------------------N 90 (199)
Q Consensus 34 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~----------------------~ 90 (199)
.+...|.++-+.+...-. |.++..-+.+|.++...|++++|..+|+++-.- ... .
T Consensus 819 ~L~~~~~~~~a~eL~~~~--~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~ 896 (950)
T 4gq2_M 819 KLFLFKQYNACMQLIGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 896 (950)
T ss_dssp HHHHTTCHHHHHHHGGGC--CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHH
T ss_pred HHHHhcHHHHHHHHHhhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchh
Confidence 334445554443322222 223445689999999999999999999986421 110 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-ccccHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATEL-EQSWAE 126 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 126 (199)
...|.....++...+-++.+++..+.||.. .++++.
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 246777888888999999999999999965 344443
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=87.98 E-value=2.1 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=9.7
Q ss_pred hhHHHhcccHHHHHHHHHHHHccCC
Q 029105 64 GNNLAEDGKFREALGKWEAALNLRP 88 (199)
Q Consensus 64 ~~~~~~~~~~~~A~~~~~~~l~~~~ 88 (199)
|..+...|++++|+.+|-+|+...|
T Consensus 24 GE~L~~~g~~~~~~~hf~nAl~Vc~ 48 (73)
T 3ax2_A 24 GEELLAQGDYEKGVDHLTNAIAVCG 48 (73)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 3333333333333333333333333
No 269
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=87.29 E-value=2.4 Score=32.34 Aligned_cols=64 Identities=8% Similarity=-0.167 Sum_probs=49.5
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHccC--------CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-cccc
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNLR--------PE--NAVLHEQKAQVLLELGDAWNALKAATRATEL-EQSW 124 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 124 (199)
..+-.+|++.++...+...++..-... |. -....+.+|..+...++|.+|.+.+..|++. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345578899999998888886543322 11 1467889999999999999999999999998 7754
No 270
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=86.76 E-value=2.3 Score=28.51 Aligned_cols=79 Identities=11% Similarity=-0.073 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHH-----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEA-----WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDR 165 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 165 (199)
....+.+|.+++..++|.+|.+.+..|+...|..... +..+-.+-+-+|++.. ...+++ .+. ..+..+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L 86 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV 86 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence 4678889999999999999999999999987764332 3334444566788764 333432 111 135566
Q ss_pred HHHHHHHhhhhh
Q 029105 166 QTALHLVKRRKH 177 (199)
Q Consensus 166 ~~~~~~~~~~~~ 177 (199)
..+. +.|+...
T Consensus 87 ~~Av-r~Gdl~~ 97 (203)
T 3t5x_A 87 TRAV-SEGNLLL 97 (203)
T ss_dssp HHHH-HHTCHHH
T ss_pred HHHH-HhCCHHH
Confidence 5544 4555444
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=85.42 E-value=3.1 Score=27.90 Aligned_cols=56 Identities=16% Similarity=0.029 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH-----HHHHHHHHHHHHcCCHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENA-----VLHEQKAQVLLELGDAW 108 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~ 108 (199)
..+.....+.+|.+++..++|.+|.+.+..|+...|... .++..+--+-.-+|++.
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677888999999999999999999999999887653 22333333344566643
No 272
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=84.68 E-value=3.3 Score=33.29 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105 127 AWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 127 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 178 (199)
.....|...+..|+|..|.+....++..+|++.++...++.++.++|...+.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 4556777888999999999999999999999999999999999999976653
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=83.14 E-value=7.1 Score=25.11 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=40.6
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCc---HHH---HH---HHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPEN---AVL---HE---QKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~---~~---~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
.-+..+..++..|+|=+|-+.++.+....+.. ..+ +. .-|..+.+.|+...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556777788888888888888888765543 112 22 2233445678888888877777653
No 274
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=83.05 E-value=6.5 Score=26.79 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhh--cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 108 WNALKAATRATE--LEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 108 ~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
+.+..+|.-+.. +....+..|...|..+...|++.+|...|+..++..-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344455555443 34456677777788888888888888888888876543
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.84 E-value=4.2 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=17.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcHH
Q 029105 130 TLGRAQLNFGEPDKAIESFERALAIKPDSEE 160 (199)
Q Consensus 130 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 160 (199)
.+|..+...|++++|..+|-+|+...|.-.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555555555555555433
No 276
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=82.74 E-value=12 Score=27.63 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRA 117 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~a 117 (199)
...+..+|-++++.+++.+|+..+..+
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 344445555555555555555555444
No 277
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.21 E-value=7.3 Score=24.60 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=44.3
Q ss_pred HHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 66 NLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 66 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
.+..+|+-++-.+.+...+.-.+-++.++.-+|.+|.+.|+..+|-+.+.+|.+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456777777777777766767777999999999999999999999999988765
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.18 E-value=3.5 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRAT 118 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al 118 (199)
+..+...+..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455566777777788888877766654
No 279
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=82.11 E-value=2.9 Score=23.99 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=24.4
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHc
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAALN 85 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 85 (199)
.+..+-..+..+...|+|++|+++.+++..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 466677889999999999999988877653
No 280
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=81.99 E-value=3.4 Score=23.97 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 96 QKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3444444555555555555555554443
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=81.25 E-value=3.9 Score=29.58 Aligned_cols=103 Identities=12% Similarity=0.002 Sum_probs=56.0
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCC----Cc----HHH--------HHHHHHHHH---Hc---CCHHHHHH--HH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRP----EN----AVL--------HEQKAQVLL---EL---GDAWNALK--AA 114 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~----~~----~~~--------~~~la~~~~---~~---~~~~~A~~--~~ 114 (199)
.....|.-++..|+|++|+..|+.++..-| ++ ..+ .+.+|...- +. .+....++ .|
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY 195 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY 195 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 345667777888888888888887765422 11 111 122222211 10 11122221 12
Q ss_pred HHHhhcccccHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCcHHH
Q 029105 115 TRATELEQSWAEAWITLG-RAQLNFGEPDKAIESFERALAIKPDSEEA 161 (199)
Q Consensus 115 ~~al~~~p~~~~~~~~lg-~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 161 (199)
-.-..+.|.+...-...| ...++.++|..|....++.+++.|....+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 222234554443333333 35678899999999999999999875544
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.50 E-value=8.8 Score=24.42 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=27.0
Q ss_pred HHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 029105 110 ALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKP 156 (199)
Q Consensus 110 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 156 (199)
+..+|.-+... -...+..|...|..+...|++.+|...|+..++...
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44455444432 334555666666666666666666666666666543
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=78.66 E-value=3.5 Score=23.92 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=27.1
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHccCCCcHHH
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNLRPENAVL 93 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 93 (199)
..+|..+...|+++.|+.+|-+|+...|.-..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 468888999999999999999998887765443
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=77.81 E-value=11 Score=24.17 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccccc------HHHH---HHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATELEQSW------AEAW---ITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~---~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
-+..|..++..|+|=+|-+.++.+....+.. ...+ ...|..+...|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566778888999999999999999876543 2222 23344567789999999999999864
No 285
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.10 E-value=8.5 Score=23.19 Aligned_cols=18 Identities=6% Similarity=-0.055 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 029105 161 ARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 161 ~~~~l~~~~~~~~~~~~a 178 (199)
+..+|..+..+++..+..
T Consensus 80 M~~nL~~v~~RL~~Le~~ 97 (116)
T 2dl1_A 80 MKETLQNVRTRLEILEKG 97 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345555555555555443
No 286
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=76.70 E-value=22 Score=26.91 Aligned_cols=60 Identities=8% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCcHHHHHHHHHHH
Q 029105 110 ALKAATRATELE-----QSWAEAWITLGRAQLNFGEPDKAIESFERALAI------KPDSEEARDDRQTAL 169 (199)
Q Consensus 110 A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 169 (199)
++..|.+++... ..+.-.+..+|-.+++.+++.+|+..+-.+-.. ..++.+++..+-.+.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 556666666542 223445667777888888888888888766543 234566665554443
No 287
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=76.57 E-value=0.022 Score=43.76 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=81.7
Q ss_pred hhcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHH
Q 029105 29 QEHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAW 108 (199)
Q Consensus 29 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 108 (199)
...|.-.+..|.|+.|.-.|....+ +..++.++...|+|..|++.-+++ +++..|..........+++.
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN------~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCC------CTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHhCcc------HHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHH
Confidence 3456777777777777776655422 334677777777777777655443 34455666666667777777
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLV 172 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 172 (199)
-|--+--..+ ++|+.. -.+-..|...|.+++=+..++.++.+...+......||.+|.+-
T Consensus 217 LAqicGLniI-vhadeL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 217 LAQMCGLHIV-VHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTHHHHHHH-CCSSCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHhcchhc-ccHHHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 6654444433 233321 12344566778888888888888877777777788888777643
No 288
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=76.37 E-value=6.2 Score=31.73 Aligned_cols=50 Identities=14% Similarity=-0.013 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCh
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEP 141 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 141 (199)
......|...+..|+|.-|.+....++..+|++..+...++.+|.++|.-
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 34456678888999999999999999999999999999999999887743
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.85 E-value=15 Score=24.59 Aligned_cols=79 Identities=8% Similarity=-0.132 Sum_probs=56.9
Q ss_pred HHHHHHHccC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHhcCChHHHHH
Q 029105 78 GKWEAALNLR---------PENAVLHEQKAQVLLELGDAWNALKAATRATEL--EQSWAEAWITLGRAQLNFGEPDKAIE 146 (199)
Q Consensus 78 ~~~~~~l~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~ 146 (199)
..+++++... |....+|...+..+ ..+....+..+|.-+... ....+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666532 22235666666554 234466888888777654 45678889999999999999999999
Q ss_pred HHHHHHhcCCC
Q 029105 147 SFERALAIKPD 157 (199)
Q Consensus 147 ~~~~al~~~p~ 157 (199)
.|+..++..-.
T Consensus 137 Vy~~GI~~~A~ 147 (202)
T 3esl_A 137 LLELGAENNCR 147 (202)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHHcCCc
Confidence 99999987644
No 290
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.27 E-value=16 Score=23.59 Aligned_cols=34 Identities=9% Similarity=-0.172 Sum_probs=18.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105 88 PENAVLHEQKAQVLLELGDAWNALKAATRATELE 121 (199)
Q Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 121 (199)
-..+..|...|..+-..|++.+|..+|+.++...
T Consensus 93 ~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 93 VSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444555555555555555555555555555543
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.78 E-value=5.2 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
...+|.=|...|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888889999999888888754
No 292
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.10 E-value=7.9 Score=21.74 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHh
Q 029105 104 LGDAWNALKAATRAT 118 (199)
Q Consensus 104 ~~~~~~A~~~~~~al 118 (199)
.|+|++|+.+|..++
T Consensus 32 ~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 32 EGNAEEAITNYKKAI 46 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 444444444444444
No 293
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=71.46 E-value=5.3 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 94 HEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
...+|+=+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888889999999999888864
No 294
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=70.17 E-value=33 Score=25.98 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCcHHHHHHHHHH
Q 029105 110 ALKAATRATELE-----QSWAEAWITLGRAQLNFGEPDKAIESFERALAI------KPDSEEARDDRQTA 168 (199)
Q Consensus 110 A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 168 (199)
++..|++++... ..+.-.+..+|-.+.+.+++.+|+..+-++-.. ..++.+.+..+-.+
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 344555555432 123334555666666666677776666655432 23445555444333
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.90 E-value=11 Score=21.11 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=8.5
Q ss_pred HcCCHHHHHHHHHHHhh
Q 029105 103 ELGDAWNALKAATRATE 119 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~ 119 (199)
..|+|++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555544443
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=67.84 E-value=12 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=10.0
Q ss_pred HhhHHHhcccHHHHHHHHHHHH
Q 029105 63 QGNNLAEDGKFREALGKWEAAL 84 (199)
Q Consensus 63 ~~~~~~~~~~~~~A~~~~~~~l 84 (199)
.|.-.-..|++++|+.+|..++
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344445555444444443
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=67.70 E-value=20 Score=27.10 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 76 ALGKWEAALNL-----RPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 76 A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
++..|.+++.. ...+...|..+|-++++.+++.+|+..+..+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 56677777654 3445677888999999999999999998776543
No 298
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.08 E-value=33 Score=24.75 Aligned_cols=111 Identities=8% Similarity=-0.104 Sum_probs=58.1
Q ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----ccccHHHHHHHHH
Q 029105 59 SFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATEL-----EQSWAEAWITLGR 133 (199)
Q Consensus 59 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~ 133 (199)
.+..+..-|.+++++++|++.+.. -+..+.+.|++..|.+...-.++. .|-+......+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~--------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ--------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH--------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 334445555555666666555433 344444555555554433222222 1222333444444
Q ss_pred HHHhcCC--------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 134 AQLNFGE--------PDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 134 ~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
++..... ..+|+.|-.+.-...-.++..+..+|..+...+++.+|...+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4433221 1234443333222233689999999999999999999877554
No 299
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.33 E-value=11 Score=21.17 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=13.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 029105 131 LGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
.|.-.-..|++++|+.+|.++++
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 33444556676666666665554
No 300
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=65.89 E-value=11 Score=24.13 Aligned_cols=81 Identities=10% Similarity=-0.043 Sum_probs=37.3
Q ss_pred chhhhhccchhhhhhccccc-chhhHHHHHHHHhhHHHhcccHH-HHHHHHHHHHcc--CCCcHHHHHHHHHHHHHcCCH
Q 029105 32 GLSGAELEKNDDNNEHQEPF-DAKQLALSFEAQGNNLAEDGKFR-EALGKWEAALNL--RPENAVLHEQKAQVLLELGDA 107 (199)
Q Consensus 32 g~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~ 107 (199)
+...+-..+|.+.+..+... ...-.....+.+|..|....++. +..+..-..+.+ +|.....|..+| .|++
T Consensus 15 a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiG-----Rg~~ 89 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIG-----RSQS 89 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHH-----HTCH
T ss_pred HHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHc-----CCch
Confidence 34444455666666665555 11112334555666665554443 222222222222 222234444444 5677
Q ss_pred HHHHHHHHHH
Q 029105 108 WNALKAATRA 117 (199)
Q Consensus 108 ~~A~~~~~~a 117 (199)
++|+.+....
T Consensus 90 ~eAlDiA~~L 99 (161)
T 2ynq_A 90 EEALELARTI 99 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7776665443
No 301
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=65.83 E-value=24 Score=26.69 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHHHHHcc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 76 ALGKWEAALNL-----RPENAVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 76 A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
++..|++++.. ...+...|..+|-.+++.++|.+|+..+..+-..
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 56677777763 3445677888999999999999999999877654
No 302
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=61.87 E-value=23 Score=26.92 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
..++..+|.+++.+|+|++|+..+++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 35677778888888888888888877764
No 303
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=60.99 E-value=2.5 Score=32.95 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=111.2
Q ss_pred hcchhhhhccchhhhhhcccccchhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHH
Q 029105 30 EHGLSGAELEKNDDNNEHQEPFDAKQLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWN 109 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 109 (199)
-++..+...|+|..|++.-+++.+ +.+|.....++...++|.-|-.+--..+- .|+.. -.+-..|...|-+++
T Consensus 175 kLAstLV~L~~yq~AVdaArKAns---~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL---~elv~~YE~~G~f~E 247 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARKANS---TRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL---EELINYYQDRGYFEE 247 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTTCCS---SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC---SGGGSSSSTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH---HHHHHHHHhCCCHHH
Confidence 346677888999999998888754 34677777788888888888766555443 33332 223344667899999
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcC-CC------cHHHHHHHHHHHHHHhhhhhhhhh
Q 029105 110 ALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERAL-AIK-PD------SEEARDDRQTALHLVKRRKHLHLS 181 (199)
Q Consensus 110 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~------~~~~~~~l~~~~~~~~~~~~a~~~ 181 (199)
-+..++.++.+..-+...+..||.+|.+- +.++-++.++.-. +++ |. ....|..+.-+|....+++.|...
T Consensus 248 LIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 248 LITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp STTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 99999999998888888999999988754 4444444443211 111 32 234588888899999999998887
Q ss_pred cccccchhhhcCCCCC
Q 029105 182 GLSNDANRFVVGDKTE 197 (199)
Q Consensus 182 ~~~~~~~~~~~~~~~e 197 (199)
........|....+.+
T Consensus 327 Mi~h~~~Aw~h~~Fkd 342 (624)
T 3lvg_A 327 MMNHPTDAWKEGQFKD 342 (624)
T ss_dssp TTSCHHHHCCGGGGTT
T ss_pred HHhCChhhccHHHHHH
Confidence 7777666666555443
No 304
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=60.61 E-value=36 Score=26.00 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHccCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 74 REALGKWEAALNLRPEN--------AVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 74 ~~A~~~~~~~l~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
+..+..++.|+..-|.. ..++..+|.+++.+|+|++|+..+++++.
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34455556666554432 36777888888888899988888888875
No 305
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=60.43 E-value=18 Score=20.23 Aligned_cols=16 Identities=13% Similarity=-0.080 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHHhh
Q 029105 104 LGDAWNALKAATRATE 119 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~ 119 (199)
.|+|++|+..|..+++
T Consensus 26 ~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 26 ATQYEEAYTAYYNGLD 41 (85)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3444444444444443
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=58.50 E-value=20 Score=20.56 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=6.2
Q ss_pred cCCHHHHHHHHHHHh
Q 029105 104 LGDAWNALKAATRAT 118 (199)
Q Consensus 104 ~~~~~~A~~~~~~al 118 (199)
.|+|++|+..|..++
T Consensus 28 ~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 28 ESRYQQALVCYQEGI 42 (93)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 344444444443333
No 307
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=58.11 E-value=33 Score=26.10 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
..++..+|.+++.+|+|++|+..+++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 35666777777777777777777777764
No 308
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.23 E-value=54 Score=23.95 Aligned_cols=41 Identities=7% Similarity=-0.160 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 143 KAIESFERALAIKPDSEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 143 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+|+.|-.+.=...-.+++.+..+|..+.+.+++.+|...+.
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 45555444222334689999999999999999999876654
No 309
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=56.35 E-value=32 Score=21.08 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=8.1
Q ss_pred hhHHHhcccHHHHHHHHH
Q 029105 64 GNNLAEDGKFREALGKWE 81 (199)
Q Consensus 64 ~~~~~~~~~~~~A~~~~~ 81 (199)
+.+++..++.+..+..+.
T Consensus 47 Srlyf~~~n~~~m~~~L~ 64 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLE 64 (126)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHH
Confidence 334444444444444443
No 310
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=56.19 E-value=40 Score=25.95 Aligned_cols=28 Identities=11% Similarity=-0.091 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 92 VLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
.++..+|.+++.+++|++|+..+++++.
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566677777777777777777776664
No 311
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=55.41 E-value=37 Score=26.13 Aligned_cols=31 Identities=26% Similarity=0.043 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
...++..+|.+|+..+++++|....++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999865
No 312
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=59.97 E-value=2.5 Score=33.99 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhhh
Q 029105 128 WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKHL 178 (199)
Q Consensus 128 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 178 (199)
....|...+..|+|..|.+....++..+|++.++...++.++.++|...+.
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 345566677889999999999999999999999999999999999876654
No 313
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=54.50 E-value=38 Score=25.71 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 107 AWNALKAATRATELEQ--------SWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
|+..+..++.|+..-| +...++..+|.+|+..|++++|....++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3444555555555433 3456788999999999999999999999885
No 314
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=54.48 E-value=53 Score=23.01 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=8.6
Q ss_pred cCChHHHHHHHHHHH
Q 029105 138 FGEPDKAIESFERAL 152 (199)
Q Consensus 138 ~~~~~~A~~~~~~al 152 (199)
+++.++|....++++
T Consensus 211 ln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 211 LNEPRAAIDMAKEAF 225 (260)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 566666665555544
No 315
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=54.21 E-value=40 Score=21.60 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=52.6
Q ss_pred HHHhhHHHhcccHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHcCCHHH-HHHHHHHHhhc--ccccHHHHHHHHHHH
Q 029105 61 EAQGNNLAEDGKFREALGKWEAALNLRPEN--AVLHEQKAQVLLELGDAWN-ALKAATRATEL--EQSWAEAWITLGRAQ 135 (199)
Q Consensus 61 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~~~~~~-A~~~~~~al~~--~p~~~~~~~~lg~~~ 135 (199)
..-+...|-..+|...+..++. .+|.. ....+.+|..|.....+.. -.......+.+ +|.....|..
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIy----- 83 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIY----- 83 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHH-----
T ss_pred HHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHH-----
Confidence 3446677888899988877665 34433 5678899999998877653 33333333333 4444445554
Q ss_pred HhcCChHHHHHHHHH
Q 029105 136 LNFGEPDKAIESFER 150 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~ 150 (199)
...|++++|+..-+.
T Consensus 84 iGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 84 IGRSQSEEALELART 98 (161)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHh
Confidence 456899998876554
No 316
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=54.10 E-value=22 Score=21.46 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=9.3
Q ss_pred HcCCHHHHHHHHHHHhh
Q 029105 103 ELGDAWNALKAATRATE 119 (199)
Q Consensus 103 ~~~~~~~A~~~~~~al~ 119 (199)
..|+|++|+.+|..+++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555555554
No 317
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=53.50 E-value=52 Score=22.62 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=7.5
Q ss_pred cCChHHHHHHHHHHH
Q 029105 138 FGEPDKAIESFERAL 152 (199)
Q Consensus 138 ~~~~~~A~~~~~~al 152 (199)
+|+.++|....++++
T Consensus 186 l~~~~~A~~lAk~af 200 (234)
T 2br9_A 186 LNSPDRACRLAKAAF 200 (234)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555554444443
No 318
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=53.08 E-value=30 Score=19.74 Aligned_cols=32 Identities=44% Similarity=0.521 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhHHHhcccHHHHHHHHHHHHcc
Q 029105 55 QLALSFEAQGNNLAEDGKFREALGKWEAALNL 86 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 86 (199)
..++....-|.-+++.++|.+|...|+++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 44555666666677777777777777776644
No 319
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=52.85 E-value=41 Score=25.60 Aligned_cols=47 Identities=26% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 108 WNALKAATRATELEQ--------SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 108 ~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
+.-+..++.|+..-| +...++..+|.+|+..|++++|....++++..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 444555555555433 34567889999999999999999999998863
No 320
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=52.54 E-value=47 Score=25.38 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 107 AWNALKAATRATELEQ--------SWAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
|+.-+..++.|+..-| +...++..+|.+|+..|++++|....++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4555666677766544 34567889999999999999999999999864
No 321
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=50.74 E-value=13 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=15.0
Q ss_pred hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHH
Q 029105 65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKA 98 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 98 (199)
.++...|.|++|.+.+++....++.+.....-|.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3445556666666666665555544444333333
No 322
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=50.08 E-value=58 Score=22.25 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHhhc-----ccccH---HHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 029105 104 LGDAWNALKAATRATEL-----EQSWA---EAWITLGRAQ-LNFGEPDKAIESFERALAI 154 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~-~~~~~~~~A~~~~~~al~~ 154 (199)
.|+.+.|...|+.|..+ .|.+| ....+.+..| .-+++.++|....++++..
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56688889999888864 34443 3445555544 4589999999999998764
No 323
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.70 E-value=1.2e+02 Score=25.81 Aligned_cols=92 Identities=14% Similarity=0.031 Sum_probs=52.9
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHH----HHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAE----AWITLGR 133 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~ 133 (199)
.+-+.+|.++.-.|+-+-....+..+.+...+...-...+|..+...|+.+.+-...+..... + ++. +-+.+|.
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~algl 568 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIAL 568 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHH
Confidence 455677888888888766666666655543333333344455555677777766665554432 2 222 2345677
Q ss_pred HHHhcCChHHHHH-HHHHHH
Q 029105 134 AQLNFGEPDKAIE-SFERAL 152 (199)
Q Consensus 134 ~~~~~~~~~~A~~-~~~~al 152 (199)
+|...|+.. |++ .+..+.
T Consensus 569 AyaGTGn~~-aIq~LL~~~~ 587 (963)
T 4ady_A 569 AYAGTGNNS-AVKRLLHVAV 587 (963)
T ss_dssp HTTTSCCHH-HHHHHHHHHH
T ss_pred HhcCCCCHH-HHHHHHHHhc
Confidence 778888865 444 444444
No 324
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.44 E-value=35 Score=19.55 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcccccH----H--HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 96 QKAQVLLELGDAWNALKAATRATELEQSWA----E--AWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 96 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~--~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
..|..++..|+|=+|=+.++.+-...|+.. . +....|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345566677777777777777776664421 1 122233344456666 7777777765
No 325
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=47.53 E-value=62 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=12.6
Q ss_pred hcchhhhhccchhhhhhccccc
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF 51 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~ 51 (199)
.++.+..+.++|++......++
T Consensus 10 ~~AklaeqaeRyddm~~~mk~v 31 (234)
T 2br9_A 10 YQAKLAEQAERYDEMVESMKKV 31 (234)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHH
Confidence 3455556667777766554443
No 326
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.99 E-value=86 Score=23.30 Aligned_cols=89 Identities=11% Similarity=-0.042 Sum_probs=61.0
Q ss_pred hHHHhcccHHHHHHHHHHHHccC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-------
Q 029105 65 NNLAEDGKFREALGKWEAALNLR-----------------PENAVLHEQKAQVLLELGDAWNALKAATRATEL------- 120 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~-----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 120 (199)
.+.....+.++|++.+++....- .....+...++..+...|+.++|...++++-..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34456678899999988764321 111355677888999999999999998887643
Q ss_pred ccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 121 EQS-WAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 121 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
+|. +...+...+..+...+++..+....-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 221 334455667777888888877766666554
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.47 E-value=24 Score=23.62 Aligned_cols=42 Identities=17% Similarity=-0.099 Sum_probs=23.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcC
Q 029105 98 AQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFG 139 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 139 (199)
-.++.+.|.+++|.+.+++...-++++......|..+-.+.+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 455667788888888887777776665555555554444333
No 328
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=46.24 E-value=44 Score=19.70 Aligned_cols=33 Identities=24% Similarity=-0.006 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAAL 84 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 84 (199)
....++.....-+.-..+.|+|++|.+.++++-
T Consensus 15 ~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 15 AYAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344556666666666677777777777666653
No 329
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=51.89 E-value=4.3 Score=32.72 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHH
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDK 143 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 143 (199)
.....|.-.+..|+|.-|.+.+..++..+|++..+...++.+|.++|.-.+
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 334556777788999999999999999999999999999999988876544
No 330
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=44.91 E-value=77 Score=22.17 Aligned_cols=15 Identities=27% Similarity=0.113 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHh
Q 029105 104 LGDAWNALKAATRAT 118 (199)
Q Consensus 104 ~~~~~~A~~~~~~al 118 (199)
+++.++|....++++
T Consensus 191 ln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 191 LNSPDRACNLAKQAF 205 (260)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 455555555444443
No 331
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=44.43 E-value=47 Score=19.50 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAA 83 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 83 (199)
...++.....-+.-..+.|+|++|.+.++++
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555566666666777777777666655
No 332
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.27 E-value=73 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc
Q 029105 90 NAVLHEQKAQVLLELGDAWNALKAATRATELE 121 (199)
Q Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 121 (199)
.+.+|...|..+...|++.+|..+|+.+++..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34445555555555555555555555555543
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.22 E-value=73 Score=21.69 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHccCCCcHH--------HHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCC
Q 029105 73 FREALGKWEAALNLRPENAV--------LHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGE 140 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 140 (199)
.+.|+..++..-.-.+-+.. +....-.++.+.|.|++|.+.+++.+..+|.+......|..+-.+.+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 46677777766555443211 122334556789999999999999999888887777777776555443
No 334
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=43.78 E-value=83 Score=24.35 Aligned_cols=26 Identities=15% Similarity=0.001 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 029105 93 LHEQKAQVLLELGDAWNALKAATRAT 118 (199)
Q Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~al 118 (199)
++..+|.+++..++|++|+..+++++
T Consensus 184 A~allarv~L~~~~~~~A~~~a~~vi 209 (517)
T 3qnk_A 184 AYALKSRVELYDKRYEDVIKSCAEVY 209 (517)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554444
No 335
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=42.86 E-value=51 Score=21.29 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 029105 109 NALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPD 157 (199)
Q Consensus 109 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 157 (199)
.|...+..+...+|......-.+..++....+....+..|...+..+|.
T Consensus 74 ~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 74 EAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3445555555566665556666666666666666666666555555554
No 336
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=42.86 E-value=84 Score=22.01 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHhhcccccHH---HHHHHHHHHHh-cCChHHHHHHHHHHH
Q 029105 105 GDAWNALKAATRATELEQSWAE---AWITLGRAQLN-FGEPDKAIESFERAL 152 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~-~~~~~~A~~~~~~al 152 (199)
.-|++|.+.... .+.|.+|- ...+.+..|.. +++.++|....++++
T Consensus 177 ~aY~~A~~iA~~--~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 177 VAYKAASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455444432 34444442 22333333333 566666665544444
No 337
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=41.90 E-value=85 Score=21.79 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=4.3
Q ss_pred cCChHHHHHH
Q 029105 138 FGEPDKAIES 147 (199)
Q Consensus 138 ~~~~~~A~~~ 147 (199)
+++.++|...
T Consensus 187 ln~~~~Ac~l 196 (248)
T 3uzd_A 187 QNAPEQACHL 196 (248)
T ss_dssp SCCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 3444444433
No 338
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.99 E-value=78 Score=24.16 Aligned_cols=30 Identities=10% Similarity=-0.126 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 120 (199)
..++..+|.+++..|+|++|+..+++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 357788899999999999999999998854
No 339
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=40.75 E-value=67 Score=24.59 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHccCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 74 REALGKWEAALNLRPE--------NAVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 74 ~~A~~~~~~~l~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
+..+..++.++..-|. ...++..+|.+++.+++|++|+..+++++.
T Consensus 155 ~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 155 AQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344455555554442 235778889999999999999999988874
No 340
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=40.51 E-value=90 Score=21.85 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhc-----ccccHH---HHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 029105 108 WNALKAATRATEL-----EQSWAE---AWITLGRAQL-NFGEPDKAIESFERALA 153 (199)
Q Consensus 108 ~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~-~~~~~~~A~~~~~~al~ 153 (199)
+.|...|+.|..+ .|.+|- ...+.+..|+ -+++.++|....++++.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677778777753 565653 2334444444 47999998877776663
No 341
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=39.77 E-value=59 Score=19.31 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHhhHHHhcccHHHHHHHHHHH
Q 029105 53 AKQLALSFEAQGNNLAEDGKFREALGKWEAA 83 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 83 (199)
...++.....-+.-..+.|+|++|.+.++++
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566666666666777777777776665
No 342
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.88 E-value=97 Score=23.64 Aligned_cols=30 Identities=13% Similarity=-0.056 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 125 AEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 125 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
..++..+|.+|+..|++++|....++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 457889999999999999999999999864
No 343
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=37.87 E-value=1e+02 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=14.4
Q ss_pred hcchhhhhccchhhhhhccccc
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF 51 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~ 51 (199)
.++.+..+.++|++......++
T Consensus 36 ~~AKLaeqaeRYddMv~~MK~v 57 (261)
T 3ubw_A 36 YQAKLAEQAERYDEMVESMKKV 57 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 4456667778888877655443
No 344
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=37.22 E-value=69 Score=19.40 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHH
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAAL 84 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 84 (199)
....++.....-+.-..+.|+|++|.+.++++-
T Consensus 32 ~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 32 LNSGNARSIVHEAFDAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555667777777777778888888887777763
No 345
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.75 E-value=1.3e+02 Score=22.47 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHhhHHHhcc---cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcc-----cccHHHHHHHH
Q 029105 61 EAQGNNLAEDG---KFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELE-----QSWAEAWITLG 132 (199)
Q Consensus 61 ~~~~~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg 132 (199)
..+-.+++..| +|..|+-.+-..-++.|... + ..++..|.+++... ..+.-.+..+|
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~g--------------r-~~~l~L~~~AI~sa~~yY~n~HvYPYtylg 303 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPG--------------R-PPAEELFKEAITVAKREYSDHHIYPYTYLG 303 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT--------------S-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCC--------------C-CCHHHHHHHHHHHHHHHhccCCccchhhhh
Confidence 33444444443 45666666555555555421 1 11556666666542 23455677888
Q ss_pred HHHHhcCChHHHHHHHHHHHhc------CCCcHHHHHHHHHHHH
Q 029105 133 RAQLNFGEPDKAIESFERALAI------KPDSEEARDDRQTALH 170 (199)
Q Consensus 133 ~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~ 170 (199)
-.+++.+++.+|+..+-++-.. ..++.+++..+-.+.-
T Consensus 304 Gy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAn 347 (472)
T 3re2_A 304 GYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAN 347 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 8999999999999999877643 2445677766655543
No 346
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=36.62 E-value=1e+02 Score=23.79 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 029105 124 WAEAWITLGRAQLNFGEPDKAIESFERALAI 154 (199)
Q Consensus 124 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 154 (199)
...++..+|.+|+..+++++|....++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999864
No 347
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=36.46 E-value=81 Score=19.98 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=41.4
Q ss_pred chhhHHHHHHHHhhHHHhcccHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 52 DAKQLALSFEAQGNNLAEDGKFREALGKWEAALN--LRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.+|....+|...+... +++...|.-+.. +.-..+..|...|..+...|++.+|..+|+.+++....
T Consensus 66 nD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 66 NDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp TCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4455555566555542 225555555443 34455677777777777888888888888888776544
No 348
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=36.37 E-value=1.1e+02 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=11.4
Q ss_pred hcchhhhhccchhhhhhccc
Q 029105 30 EHGLSGAELEKNDDNNEHQE 49 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~ 49 (199)
.++.+..+.++|++......
T Consensus 9 ~~AklaeqaeRyddM~~~Mk 28 (248)
T 3uzd_A 9 QKARLAEQAERYDDMAAAMK 28 (248)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 34455566677766655443
No 349
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=36.26 E-value=1.2e+02 Score=22.93 Aligned_cols=29 Identities=7% Similarity=-0.148 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAAL 84 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 84 (199)
....+..++..+...++|.+|.-++....
T Consensus 34 ~i~~l~~L~~~h~~~~ny~EAa~~l~lhA 62 (436)
T 2yin_A 34 YIRYLYKLRDLHLDCDNYTEAAYTLLLHT 62 (436)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45566778888999999998888775443
No 350
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=35.94 E-value=1e+02 Score=21.04 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHhhHHH-----hcccHHHHHHHHHHHHc-----cCCCcH---HHHHHHHHHHHH-cCCHHHHHHHHHHHhhc
Q 029105 60 FEAQGNNLA-----EDGKFREALGKWEAALN-----LRPENA---VLHEQKAQVLLE-LGDAWNALKAATRATEL 120 (199)
Q Consensus 60 ~~~~~~~~~-----~~~~~~~A~~~~~~~l~-----~~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~al~~ 120 (199)
+...|..|+ ..|+.+.|...|+.|.. +.|.+| .+..+.+..|+. +++.++|....++++..
T Consensus 123 ~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 123 LKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334555553 35667888889988875 345554 566666766664 78899999999998763
No 351
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=34.99 E-value=64 Score=24.73 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 107 AWNALKAATRATELEQ--------SWAEAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
|+.-++.++.|+..-| +...++..+|.+|+..+++++|....++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4445555666665433 2345788899999999999999999988874
No 352
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=34.68 E-value=1.1e+02 Score=21.44 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhhcccccHH---HHHHHHHHHH-hcCChHHHHHHHHHHHhc
Q 029105 104 LGDAWNALKAATRATELEQSWAE---AWITLGRAQL-NFGEPDKAIESFERALAI 154 (199)
Q Consensus 104 ~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~-~~~~~~~A~~~~~~al~~ 154 (199)
..-|++|.+....-++..|.+|- ...+.+..|+ -+++.++|....++++..
T Consensus 172 ~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 172 VEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567777766554433565553 2334444444 467777777777766654
No 353
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=33.21 E-value=62 Score=24.63 Aligned_cols=29 Identities=31% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 029105 91 AVLHEQKAQVLLELGDAWNALKAATRATE 119 (199)
Q Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~al~ 119 (199)
..++..+|.+++.+++|++|+...++++.
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35666677777777777777777777664
No 354
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=32.08 E-value=1.1e+02 Score=20.18 Aligned_cols=45 Identities=9% Similarity=-0.110 Sum_probs=28.1
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccc
Q 029105 78 GKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQ 122 (199)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 122 (199)
..|-.+++....+..-+...-.-+.++|+|++|.++..+......
T Consensus 19 ~~~~~~LR~qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~~q 63 (192)
T 1ixm_A 19 NELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDAK 63 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334444554444444444444556789999999999988776533
No 355
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=31.23 E-value=84 Score=18.55 Aligned_cols=72 Identities=14% Similarity=-0.043 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
...++|...- ..+...+....+-......+..+|+|++|....+... .| +.--.++.|-.+.|--+++...+
T Consensus 20 H~HqEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~p---dlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIA-EWLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP--WP---ALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CG---GGHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--Cc---hHHHHHHHHHHhcccHHHHHHHH
Confidence 3445554332 2334444433334444556677788888776554433 22 23333455566777777766666
No 356
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=31.15 E-value=1.3e+02 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhh-----cccccHH---HHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 029105 107 AWNALKAATRATE-----LEQSWAE---AWITLGRAQL-NFGEPDKAIESFERALA 153 (199)
Q Consensus 107 ~~~A~~~~~~al~-----~~p~~~~---~~~~lg~~~~-~~~~~~~A~~~~~~al~ 153 (199)
.+.|.+.|+.|.. +.|.+|- ...+.+..|+ -+++.++|....++++.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777777765 3566653 2334444444 57999998877666653
No 357
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.98 E-value=1.9e+02 Score=22.47 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=10.2
Q ss_pred HHhhHHHhcccHHHHHHHH
Q 029105 62 AQGNNLAEDGKFREALGKW 80 (199)
Q Consensus 62 ~~~~~~~~~~~~~~A~~~~ 80 (199)
..=..++..|+|++|....
T Consensus 366 ~~F~~l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 366 RKFNALFAQGNYSEAAKVA 384 (494)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3334555566666665543
No 358
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=30.55 E-value=2.6e+02 Score=23.96 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=58.9
Q ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 029105 58 LSFEAQGNNLAEDGKFREALGKWEAALNLRPENA--VLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ 135 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 135 (199)
.+...+|.++.-.++ +++.+.+...+.-+.... .+-..+|.++.-.|+-+.....+..+..-..+...-...+|..+
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 455677887777776 456666777665433222 34556788887788876666666665554444444445566666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 029105 136 LNFGEPDKAIESFERALA 153 (199)
Q Consensus 136 ~~~~~~~~A~~~~~~al~ 153 (199)
...|+.+.+....+....
T Consensus 535 l~~g~~e~~~~li~~L~~ 552 (963)
T 4ady_A 535 INYGRQELADDLITKMLA 552 (963)
T ss_dssp HTTTCGGGGHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHh
Confidence 677888777666665443
No 359
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=30.05 E-value=1.4e+02 Score=20.85 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=14.7
Q ss_pred hcchhhhhccchhhhhhccccc
Q 029105 30 EHGLSGAELEKNDDNNEHQEPF 51 (199)
Q Consensus 30 ~~g~~~~~~~~~~~A~~~~~~~ 51 (199)
.++.+..+.++|++......++
T Consensus 33 ~~AkLaeqaeRyddmv~~mk~v 54 (260)
T 2npm_A 33 YMAKLAEQAERYDEMAKYMKDV 54 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 4566677788888877654443
No 360
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=29.83 E-value=1.5e+02 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 029105 126 EAWITLGRAQLNFGEPDKAIESFERALA 153 (199)
Q Consensus 126 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 153 (199)
.++..+|.+++..+++++|....++++.
T Consensus 199 aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 199 AALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444455555555555555555555443
No 361
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=29.51 E-value=1.5e+02 Score=23.11 Aligned_cols=25 Identities=16% Similarity=-0.170 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhhc
Q 029105 158 SEEARDDRQTALHLVKRRKHLHLSG 182 (199)
Q Consensus 158 ~~~~~~~l~~~~~~~~~~~~a~~~~ 182 (199)
...++..++++++-.+++++|....
T Consensus 197 k~aA~allarv~L~~~~~~~A~~~a 221 (528)
T 3i4g_A 197 KQAALAFLGRTCMLQKDWKSGAKAF 221 (528)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3567788888888888888876544
No 362
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=29.44 E-value=91 Score=18.43 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCChHHHHHHH
Q 029105 71 GKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQLNFGEPDKAIESF 148 (199)
Q Consensus 71 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 148 (199)
...++|...- ..+...+....+-......+..+|+|++|....+... .|+ .--.++.|-.+.|--+++...+
T Consensus 21 H~HqEA~tIA-dwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pd---lepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIA-EWLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA--YPD---LEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGG---GHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--Cch---HHHHHHHHHHhcccHHHHHHHH
Confidence 3445554332 2333444433333444556667788888777665443 232 2233455556667666666555
No 363
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=29.42 E-value=66 Score=24.51 Aligned_cols=33 Identities=21% Similarity=-0.040 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 123 SWAEAWITLGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 123 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
+...++..+|.+|+.++++++|....++++...
T Consensus 189 tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 189 NTDVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345688899999999999999999999998653
No 364
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=27.41 E-value=1.6e+02 Score=20.95 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHhhccccc
Q 029105 73 FREALGKWEAALNLRPENAVLHEQKAQVLLELGD------------------------AWNALKAATRATELEQSW 124 (199)
Q Consensus 73 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~------------------------~~~A~~~~~~al~~~p~~ 124 (199)
|+.|++-.+-.++..|++..+....+.+.+..=+ .++|.++++..-+..|..
T Consensus 101 FDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~e~ 176 (346)
T 3qtm_A 101 IDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEY 176 (346)
T ss_dssp HHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHhhChhh
No 365
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=27.25 E-value=53 Score=14.94 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHhc
Q 029105 141 PDKAIESFERALAI 154 (199)
Q Consensus 141 ~~~A~~~~~~al~~ 154 (199)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 45566666655554
No 366
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=27.09 E-value=2e+02 Score=21.56 Aligned_cols=132 Identities=12% Similarity=0.090 Sum_probs=68.8
Q ss_pred cchhhhhhcccccchh---hHHHHHHHHhhHHHhcccHHHHHHHHHHHHccCCCcHHHHHH-HHHH--------------
Q 029105 39 EKNDDNNEHQEPFDAK---QLALSFEAQGNNLAEDGKFREALGKWEAALNLRPENAVLHEQ-KAQV-------------- 100 (199)
Q Consensus 39 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-la~~-------------- 100 (199)
++|.+++...-....| +.......+|.-+...|+...|.-+|--+=.++. -..+|.. +-..
T Consensus 227 ~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk-~v~iW~~~~~~~~~~~~~~~~s~~~~ 305 (399)
T 2pm7_A 227 SQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDK-VASIWLSEFPDLEDKLKKDNKTIYEA 305 (399)
T ss_dssp GGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHH-HHHHHHHSHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHH-HHHHHHHhcchhhhccccccCCcccc
Confidence 3455554433222333 4556667899988888888888887765532211 1233322 1100
Q ss_pred -HHHcCCHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 029105 101 -LLELGDAWNALKAATRATELE-----QSWAEAWITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKR 174 (199)
Q Consensus 101 -~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 174 (199)
...+.++-+=...|+.++... +.-...+...|.++..+|+.+.|+++++.. -.+++.+-...-+++...|.
T Consensus 306 ~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~l---p~~~~~~~~lr~Rl~~a~~~ 382 (399)
T 2pm7_A 306 HSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNSL---PSDNEEVKTEKARVLIASGK 382 (399)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCC
Confidence 001111112223344443311 122345667888999999999999988743 12345554555555555553
No 367
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.77 E-value=2e+02 Score=21.27 Aligned_cols=86 Identities=10% Similarity=-0.040 Sum_probs=54.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcc-----------------cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------
Q 029105 98 AQVLLELGDAWNALKAATRATELE-----------------QSWAEAWITLGRAQLNFGEPDKAIESFERALAI------ 154 (199)
Q Consensus 98 a~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------ 154 (199)
..+.....+.++|++.++++...- .........++..|...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 445567789999999998764321 012345667888999999999999998887643
Q ss_pred -CCC-cHHHHHHHHHHHHHHhhhhhhhhhcc
Q 029105 155 -KPD-SEEARDDRQTALHLVKRRKHLHLSGL 183 (199)
Q Consensus 155 -~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 183 (199)
+|. +...+...+..+...+++..+....+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l 193 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSL 193 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 121 12334444555556666665544433
No 368
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=24.66 E-value=2.3e+02 Score=21.48 Aligned_cols=25 Identities=8% Similarity=-0.279 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q 029105 131 LGRAQLNFGEPDKAIESFERALAIK 155 (199)
Q Consensus 131 lg~~~~~~~~~~~A~~~~~~al~~~ 155 (199)
....+..-+.++.|+..++.++...
T Consensus 98 ~i~~f~kg~~~E~ai~l~k~L~~~y 122 (436)
T 2yin_A 98 IIGYFDKGKMWEEAISLCKELAEQY 122 (436)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3444455566788888888777543
No 369
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=24.18 E-value=67 Score=24.23 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 029105 159 EEARDDRQTALHLVKRR 175 (199)
Q Consensus 159 ~~~~~~l~~~~~~~~~~ 175 (199)
++++...|.++.++|..
T Consensus 328 aEv~L~~AEA~~~~g~~ 344 (441)
T 3l22_A 328 AETLLDLAECYANKAGG 344 (441)
T ss_dssp HHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 45666666666666654
No 370
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition, double stranded VIR viral protein,RNA binding protein; 1.65A {Marburg virus}
Probab=23.66 E-value=70 Score=19.38 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHH-hhcccccHHHHHHHHHHHHhc----CChHHHHHHHHHHHhc
Q 029105 105 GDAWNALKAATRA-TELEQSWAEAWITLGRAQLNF----GEPDKAIESFERALAI 154 (199)
Q Consensus 105 ~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~ 154 (199)
|+.+-..+.+... ...-|.+..++..|..+..+. |..+--...|...+..
T Consensus 21 gkP~iSAKDL~~imydHLPGfgTaFHqLvQVicKigkd~~~~~~i~~~f~asLae 75 (146)
T 4gh9_A 21 SKPNLSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSE 75 (146)
T ss_dssp ----CCHHHHHHHHHTTCSSSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcccCchhHHHHHHHHHHhc
Confidence 4444333333333 344577666777777766665 5556566666655544
No 371
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=23.35 E-value=1.1e+02 Score=17.49 Aligned_cols=22 Identities=0% Similarity=0.027 Sum_probs=12.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhc
Q 029105 99 QVLLELGDAWNALKAATRATEL 120 (199)
Q Consensus 99 ~~~~~~~~~~~A~~~~~~al~~ 120 (199)
..++..++.+..+..+..+.+.
T Consensus 18 r~~f~~~n~~~m~~~L~pLh~~ 39 (94)
T 3fap_B 18 RLYFGERNVKGMFEVLEPLHAM 39 (94)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHH
Confidence 3455556666666665555544
No 372
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=23.17 E-value=1.4e+02 Score=19.79 Aligned_cols=53 Identities=15% Similarity=0.002 Sum_probs=26.0
Q ss_pred cchhhhhccchhhhhhccccc---------chh-hHHHHHHHHhhHHHhcccHHHHHHHHHHH
Q 029105 31 HGLSGAELEKNDDNNEHQEPF---------DAK-QLALSFEAQGNNLAEDGKFREALGKWEAA 83 (199)
Q Consensus 31 ~g~~~~~~~~~~~A~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 83 (199)
.++..++.|+...|.+.+..+ .-| ....-....+..+...|++.+|-..++.+
T Consensus 114 ~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~A 176 (191)
T 3dza_A 114 SANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGA 176 (191)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345555556665555544433 122 12233344555555556665555555544
No 373
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.73 E-value=2.2e+02 Score=23.06 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred hHHHhcccHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcccccHHHHHHHHHHH------Hhc
Q 029105 65 NNLAEDGKFREALGKWEAALNLRPENAVLHEQKAQVLLELGDAWNALKAATRATELEQSWAEAWITLGRAQ------LNF 138 (199)
Q Consensus 65 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~ 138 (199)
.++...|+|+.|+.++-+. +..--..+|.++...|-... -...+..+|+ ....+++.+. ++.
T Consensus 302 ~vLlLtgqFE~AI~~L~~~------~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~--~~~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF------SEMDAVHLAIGLASLKLFKI----DSSTRLTKKP--KRDIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT------CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc------CchhHHHHHHHHHHcCCccC----CCcccccCCC--cccccHHHHHHHHHHHhhc
Q ss_pred CChHHHHHHH
Q 029105 139 GEPDKAIESF 148 (199)
Q Consensus 139 ~~~~~A~~~~ 148 (199)
.+..+|+++|
T Consensus 370 td~~~Al~Y~ 379 (661)
T 2qx5_A 370 SDPRVAVEYL 379 (661)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
No 374
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=22.71 E-value=2.3e+02 Score=21.80 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=19.0
Q ss_pred HHHHHHHHHHH------HcCCHHHHHHHHHHHhh
Q 029105 92 VLHEQKAQVLL------ELGDAWNALKAATRATE 119 (199)
Q Consensus 92 ~~~~~la~~~~------~~~~~~~A~~~~~~al~ 119 (199)
.++..++.+++ ..++|++|+..+++++.
T Consensus 189 aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 189 VASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 45666666665 45677788777777763
No 375
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=22.68 E-value=72 Score=18.16 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHhhccc
Q 029105 105 GDAWNALKAATRATELEQ 122 (199)
Q Consensus 105 ~~~~~A~~~~~~al~~~p 122 (199)
..++.|..+..++|..+.
T Consensus 11 ~~h~~AF~~Is~aL~~DE 28 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 345666677777766543
No 376
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.05 E-value=2.3e+02 Score=20.58 Aligned_cols=92 Identities=14% Similarity=-0.000 Sum_probs=51.2
Q ss_pred Hhhhcchhhhhccchhhhhhccccc---------chhhHHHHHHHHhhHHHhcccHHHHHHH--HHHHHccCCCcHHHHH
Q 029105 27 QDQEHGLSGAELEKNDDNNEHQEPF---------DAKQLALSFEAQGNNLAEDGKFREALGK--WEAALNLRPENAVLHE 95 (199)
Q Consensus 27 ~~~~~g~~~~~~~~~~~A~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~A~~~--~~~~l~~~~~~~~~~~ 95 (199)
.....|..+...|++.+|+..|+.. .+.....-...+. ....+|--|+.+ -++. +..++..-..
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli---~icrEYilal~iEl~Rr~--l~~~~~kR~l 190 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKIL---ETAREYILGLSIELERRS--LKEGNTVRML 190 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHH---HHHHHHHHHHHHHHHHHT--CCTTCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh--cCcccHHHHH
Confidence 3456688899999999999999876 1122222111111 111234444433 2222 2233322122
Q ss_pred HH---------------------HHHHHHcCCHHHHHHHHHHHhhcccc
Q 029105 96 QK---------------------AQVLLELGDAWNALKAATRATELEQS 123 (199)
Q Consensus 96 ~l---------------------a~~~~~~~~~~~A~~~~~~al~~~p~ 123 (199)
.| -...++.++|..|....++.+++.|.
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 22 12345778899998999999988885
No 377
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.66 E-value=1.4e+02 Score=18.61 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=20.3
Q ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHH
Q 029105 56 LALSFEAQGNNLAEDGKFREALGKWEAA 83 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 83 (199)
.+..+...|.+|...|+.+.|--.|-+.
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~ 66 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKY 66 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667778888888888887777664
No 378
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=20.77 E-value=1.2e+02 Score=16.95 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCCcHHHHH
Q 029105 144 AIESFERALAIKPDSEEARD 163 (199)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~ 163 (199)
++..-.+.++.+|++|..+.
T Consensus 29 ~v~~Ai~~L~~~PsnPa~LA 48 (85)
T 2ca5_A 29 ELTLALDKLAKNPSNPQLLA 48 (85)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHH
Confidence 33333344445555555433
No 379
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=20.77 E-value=1.3e+02 Score=23.06 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhc-cc--------ccHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHhc
Q 029105 109 NALKAATRATEL-EQ--------SWAEAWITLGRAQLNFG---------EPDKAIESFERALAI 154 (199)
Q Consensus 109 ~A~~~~~~al~~-~p--------~~~~~~~~lg~~~~~~~---------~~~~A~~~~~~al~~ 154 (199)
.-+..++.|+.. -| +...++..+|.+|+..+ ++++|....++++..
T Consensus 163 ~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 163 IIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp THHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 455566666655 33 33567888899998887 899999999988863
No 380
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=20.35 E-value=2.7e+02 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHhh
Q 029105 92 VLHEQKAQVLLEL------GDAWNALKAATRATE 119 (199)
Q Consensus 92 ~~~~~la~~~~~~------~~~~~A~~~~~~al~ 119 (199)
.++..+|.+++.. ++|++|+..+++++.
T Consensus 198 aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 198 ANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 4556666666643 677777777777764
No 381
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.33 E-value=2.1e+02 Score=19.49 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcccccHHH--------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Q 029105 107 AWNALKAATRATELEQSWAEA--------WITLGRAQLNFGEPDKAIESFERALAIKPDSEEARDDRQTALHLVKRRKH 177 (199)
Q Consensus 107 ~~~A~~~~~~al~~~p~~~~~--------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 177 (199)
.+.|+..++..-.-.+-.... ....-.++++.|.|++|.+.+++.+..+|.+......|..+-.+...+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccH
Confidence 678888887776655421111 12333567889999999999999999888887777777777665554443
Done!