Query 029106
Match_columns 199
No_of_seqs 241 out of 1466
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.8 5.4E-19 1.8E-23 127.6 5.0 56 144-199 15-75 (80)
2 2dmt_A Homeobox protein BARH-l 99.7 7.6E-19 2.6E-23 126.1 3.6 57 143-199 14-71 (80)
3 2cra_A Homeobox protein HOX-B1 99.7 9E-19 3.1E-23 122.7 3.5 57 143-199 4-61 (70)
4 1wh7_A ZF-HD homeobox family p 99.7 2.1E-18 7E-23 124.8 4.9 56 143-199 14-75 (80)
5 2djn_A Homeobox protein DLX-5; 99.7 1.5E-18 5E-23 121.6 3.3 57 143-199 4-61 (70)
6 2dmu_A Homeobox protein goosec 99.7 1.4E-18 4.7E-23 121.6 2.8 56 144-199 5-61 (70)
7 2kt0_A Nanog, homeobox protein 99.7 2.5E-18 8.5E-23 124.1 4.2 57 143-199 19-76 (84)
8 2da3_A Alpha-fetoprotein enhan 99.7 1.4E-18 4.8E-23 124.1 2.6 57 143-199 14-71 (80)
9 2da2_A Alpha-fetoprotein enhan 99.7 1.6E-18 5.5E-23 121.1 2.8 57 143-199 4-61 (70)
10 2vi6_A Homeobox protein nanog; 99.7 1.2E-18 4.2E-23 119.2 2.1 56 144-199 1-57 (62)
11 2h1k_A IPF-1, pancreatic and d 99.7 1.1E-18 3.7E-23 119.9 1.8 55 145-199 2-57 (63)
12 1nk2_P Homeobox protein VND; h 99.7 2.6E-18 8.8E-23 122.5 3.1 57 143-199 6-63 (77)
13 2dms_A Homeobox protein OTX2; 99.7 3.4E-18 1.2E-22 122.6 3.3 56 144-199 5-61 (80)
14 2da1_A Alpha-fetoprotein enhan 99.7 2.2E-18 7.7E-23 120.4 2.3 56 144-199 5-61 (70)
15 2cue_A Paired box protein PAX6 99.7 2.9E-18 9.9E-23 123.1 2.7 56 144-199 5-61 (80)
16 2e1o_A Homeobox protein PRH; D 99.7 3.4E-18 1.2E-22 119.8 2.8 55 145-199 6-61 (70)
17 2hdd_A Protein (engrailed home 99.7 2.2E-18 7.5E-23 117.6 1.5 54 146-199 3-57 (61)
18 2dmq_A LIM/homeobox protein LH 99.7 4.4E-18 1.5E-22 121.8 2.8 56 144-199 5-61 (80)
19 1ig7_A Homeotic protein MSX-1; 99.7 3.2E-18 1.1E-22 115.4 2.0 53 147-199 1-54 (58)
20 1puf_A HOX-1.7, homeobox prote 99.7 5.9E-18 2E-22 120.7 3.4 56 144-199 11-67 (77)
21 3rkq_A Homeobox protein NKX-2. 99.7 3.6E-18 1.2E-22 114.6 2.0 54 146-199 2-56 (58)
22 2m0c_A Homeobox protein arista 99.7 6.9E-18 2.4E-22 119.0 3.0 58 142-199 5-63 (75)
23 1akh_A Protein (mating-type pr 99.7 3.1E-18 1E-22 116.6 1.1 56 144-199 3-59 (61)
24 2l7z_A Homeobox protein HOX-A1 99.7 7.4E-18 2.5E-22 119.1 2.8 55 145-199 6-61 (73)
25 1bw5_A ISL-1HD, insulin gene e 99.7 5.7E-18 2E-22 117.2 2.1 54 146-199 3-57 (66)
26 2da4_A Hypothetical protein DK 99.7 4.1E-18 1.4E-22 122.2 1.3 56 144-199 6-66 (80)
27 1yz8_P Pituitary homeobox 2; D 99.7 2.4E-18 8.2E-23 119.9 0.1 56 144-199 1-57 (68)
28 1ahd_P Antennapedia protein mu 99.7 5.3E-18 1.8E-22 118.3 1.4 54 146-199 2-56 (68)
29 1fjl_A Paired protein; DNA-bin 99.7 7.4E-18 2.5E-22 121.1 2.2 56 144-199 16-72 (81)
30 1jgg_A Segmentation protein EV 99.7 7.3E-18 2.5E-22 114.6 1.8 53 147-199 2-55 (60)
31 1zq3_P PRD-4, homeotic bicoid 99.7 8.1E-18 2.8E-22 117.3 2.0 54 146-199 2-56 (68)
32 2r5y_A Homeotic protein sex co 99.7 7.3E-18 2.5E-22 123.0 1.5 57 143-199 25-82 (88)
33 1b8i_A Ultrabithorax, protein 99.7 9.5E-18 3.2E-22 120.9 1.8 56 144-199 18-74 (81)
34 1ftt_A TTF-1 HD, thyroid trans 99.7 1.2E-17 4.2E-22 116.4 2.1 54 146-199 2-56 (68)
35 2k40_A Homeobox expressed in E 99.7 1.5E-17 5.2E-22 115.4 1.9 54 146-199 1-55 (67)
36 2da5_A Zinc fingers and homeob 99.7 3.1E-17 1.1E-21 116.5 3.6 53 147-199 8-61 (75)
37 3a01_A Homeodomain-containing 99.7 2.5E-17 8.5E-22 121.7 3.0 56 144-199 15-71 (93)
38 1uhs_A HOP, homeodomain only p 99.7 1.7E-17 5.9E-22 116.7 2.0 53 147-199 2-56 (72)
39 1x2n_A Homeobox protein pknox1 99.7 2.6E-17 8.9E-22 116.0 2.8 56 144-199 5-64 (73)
40 1wi3_A DNA-binding protein SAT 99.6 4.3E-17 1.5E-21 114.8 3.3 54 144-197 5-60 (71)
41 1du6_A PBX1, homeobox protein 99.6 4.1E-17 1.4E-21 112.1 3.1 54 146-199 3-60 (64)
42 2ecc_A Homeobox and leucine zi 99.6 2.8E-17 9.7E-22 118.0 2.3 52 148-199 5-57 (76)
43 2hi3_A Homeodomain-only protei 99.6 2.8E-17 9.6E-22 116.0 2.1 53 147-199 3-57 (73)
44 3nar_A ZHX1, zinc fingers and 99.6 2.9E-17 1E-21 121.8 1.8 54 146-199 25-79 (96)
45 1b72_A Protein (homeobox prote 99.6 2.7E-17 9.1E-22 122.1 1.6 56 144-199 32-88 (97)
46 3a02_A Homeobox protein arista 99.6 2.5E-17 8.5E-22 111.9 1.2 51 149-199 2-53 (60)
47 2ly9_A Zinc fingers and homeob 99.6 4.5E-17 1.5E-21 114.9 2.2 54 146-199 6-60 (74)
48 2dn0_A Zinc fingers and homeob 99.6 4.8E-17 1.7E-21 115.6 2.3 54 146-199 8-62 (76)
49 3a03_A T-cell leukemia homeobo 99.6 3.5E-17 1.2E-21 110.0 1.1 49 151-199 2-51 (56)
50 1puf_B PRE-B-cell leukemia tra 99.6 7.1E-17 2.4E-21 113.7 2.1 54 146-199 1-58 (73)
51 2cuf_A FLJ21616 protein; homeo 99.6 7E-17 2.4E-21 119.4 2.1 56 144-199 5-76 (95)
52 2cqx_A LAG1 longevity assuranc 99.6 2.6E-17 9E-22 116.5 -0.4 54 146-199 8-63 (72)
53 2dmn_A Homeobox protein TGIF2L 99.6 1.6E-16 5.5E-21 115.1 3.0 56 144-199 5-64 (83)
54 1mnm_C Protein (MAT alpha-2 tr 99.6 9.7E-17 3.3E-21 116.8 1.7 56 144-199 25-84 (87)
55 2e19_A Transcription factor 8; 99.6 1.7E-16 5.9E-21 110.0 2.9 49 151-199 8-57 (64)
56 1k61_A Mating-type protein alp 99.6 1.1E-16 3.8E-21 108.6 1.8 51 149-199 1-55 (60)
57 1b72_B Protein (PBX1); homeodo 99.6 1.1E-16 3.8E-21 116.1 1.8 54 146-199 1-58 (87)
58 2dmp_A Zinc fingers and homeob 99.6 2.8E-16 9.6E-21 115.3 3.5 51 149-199 16-67 (89)
59 2xsd_C POU domain, class 3, tr 99.6 1E-16 3.5E-21 129.8 1.1 57 143-199 96-153 (164)
60 1au7_A Protein PIT-1, GHF-1; c 99.6 1.5E-16 5E-21 126.5 1.7 57 143-199 84-141 (146)
61 2ecb_A Zinc fingers and homeob 99.6 1.8E-16 6.1E-21 116.9 1.9 49 151-199 16-65 (89)
62 1le8_B Mating-type protein alp 99.6 2.1E-16 7.2E-21 114.3 1.8 53 147-199 3-59 (83)
63 3d1n_I POU domain, class 6, tr 99.6 4.2E-16 1.4E-20 124.1 2.8 56 144-199 91-147 (151)
64 1e3o_C Octamer-binding transcr 99.6 3.1E-16 1.1E-20 126.2 1.6 55 145-199 100-155 (160)
65 1lfb_A Liver transcription fac 99.6 3.9E-16 1.3E-20 117.1 1.8 56 144-199 7-84 (99)
66 1x2m_A LAG1 longevity assuranc 99.6 1.9E-16 6.5E-21 110.2 -0.1 45 155-199 9-55 (64)
67 3l1p_A POU domain, class 5, tr 99.6 3.6E-16 1.2E-20 125.3 1.2 56 144-199 94-150 (155)
68 2d5v_A Hepatocyte nuclear fact 99.6 8.6E-16 2.9E-20 123.5 2.3 56 144-199 95-151 (164)
69 2da6_A Hepatocyte nuclear fact 99.6 1E-15 3.6E-20 115.5 2.6 56 144-199 4-81 (102)
70 2l9r_A Homeobox protein NKX-3. 99.5 6.8E-16 2.3E-20 108.7 1.4 49 151-199 9-58 (69)
71 3nau_A Zinc fingers and homeob 99.5 7.2E-16 2.5E-20 107.9 0.7 47 153-199 11-58 (66)
72 3k2a_A Homeobox protein MEIS2; 99.4 1.2E-14 4.1E-19 101.3 1.1 48 152-199 4-55 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 2.7E-14 9.2E-19 118.7 -0.8 56 144-199 113-190 (194)
74 2da7_A Zinc finger homeobox pr 99.3 1.7E-13 5.9E-18 96.7 1.1 44 155-198 14-58 (71)
75 2h8r_A Hepatocyte nuclear fact 99.3 2.8E-13 9.7E-18 114.5 2.5 56 144-199 140-217 (221)
76 1mh3_A Maltose binding-A1 home 99.3 9.9E-13 3.4E-17 115.9 2.0 53 147-199 366-419 (421)
77 2lk2_A Homeobox protein TGIF1; 99.2 1.1E-12 3.8E-17 96.6 0.5 48 152-199 11-62 (89)
78 2nzz_A Penetratin conjugated G 98.3 3.9E-08 1.3E-12 61.2 -0.9 13 187-199 1-13 (37)
79 2ys9_A Homeobox and leucine zi 95.5 0.0045 1.5E-07 43.3 1.6 40 157-196 17-57 (70)
80 2glo_A Brinker CG9653-PA; prot 69.6 2.1 7.3E-05 27.4 1.7 45 150-195 3-48 (59)
81 1hlv_A CENP-B, major centromer 68.8 3.1 0.00011 30.3 2.7 48 148-197 3-50 (131)
82 1tc3_C Protein (TC3 transposas 64.0 4.9 0.00017 23.2 2.5 42 152-197 5-46 (51)
83 2elh_A CG11849-PA, LD40883P; s 63.8 5.6 0.00019 27.4 3.1 44 147-194 17-60 (87)
84 1jko_C HIN recombinase, DNA-in 51.6 7.8 0.00027 22.8 1.9 40 153-196 6-45 (52)
85 2lv7_A Calcium-binding protein 46.7 21 0.00073 24.9 3.9 46 149-194 26-79 (100)
86 1iuf_A Centromere ABP1 protein 46.4 18 0.00061 27.2 3.6 50 147-196 6-60 (144)
87 2rn7_A IS629 ORFA; helix, all 38.4 19 0.00063 25.2 2.4 45 150-194 4-52 (108)
88 3i5g_B Myosin regulatory light 37.2 55 0.0019 24.1 5.1 39 149-187 6-50 (153)
89 1p4w_A RCSB; solution structur 35.5 15 0.00051 26.2 1.5 41 150-195 32-72 (99)
90 3hug_A RNA polymerase sigma fa 33.2 8.5 0.00029 26.4 -0.1 40 153-196 38-77 (92)
91 2jn6_A Protein CGL2762, transp 32.7 28 0.00095 23.8 2.5 41 151-194 4-45 (97)
92 3fmy_A HTH-type transcriptiona 32.1 39 0.0013 21.8 3.1 41 151-197 9-49 (73)
93 1je8_A Nitrate/nitrite respons 30.8 11 0.00038 25.5 0.1 40 151-195 20-59 (82)
94 3c57_A Two component transcrip 30.8 13 0.00044 25.9 0.5 39 152-195 27-65 (95)
95 2o8x_A Probable RNA polymerase 30.6 9.6 0.00033 24.2 -0.2 40 152-195 15-54 (70)
96 2xi8_A Putative transcription 30.5 11 0.00039 23.1 0.2 23 175-197 17-39 (66)
97 2iai_A Putative transcriptiona 30.3 19 0.00064 27.8 1.4 39 158-196 36-74 (230)
98 2kvr_A Ubiquitin carboxyl-term 30.2 28 0.00096 26.2 2.3 21 175-195 72-92 (130)
99 2r1j_L Repressor protein C2; p 29.2 13 0.00045 23.0 0.3 23 175-197 21-43 (68)
100 2rgt_A Fusion of LIM/homeobox 28.7 0.98 3.3E-05 35.1 -6.4 30 144-173 134-163 (169)
101 1zug_A Phage 434 CRO protein; 27.6 14 0.00047 23.2 0.1 23 175-197 19-41 (71)
102 1fse_A GERE; helix-turn-helix 27.5 14 0.00047 23.7 0.1 40 151-195 10-49 (74)
103 2k27_A Paired box protein PAX- 27.5 90 0.0031 23.0 4.9 41 151-195 24-64 (159)
104 3bs3_A Putative DNA-binding pr 27.0 15 0.0005 23.5 0.2 23 175-197 26-48 (76)
105 1u78_A TC3 transposase, transp 27.0 32 0.0011 24.5 2.1 41 151-195 5-45 (141)
106 2qko_A Possible transcriptiona 26.4 25 0.00085 26.5 1.5 40 158-197 34-73 (215)
107 3o9x_A Uncharacterized HTH-typ 26.3 41 0.0014 24.2 2.7 40 152-197 70-109 (133)
108 2pmy_A RAS and EF-hand domain- 25.2 20 0.0007 23.9 0.7 43 152-194 20-68 (91)
109 1ku3_A Sigma factor SIGA; heli 25.0 35 0.0012 22.0 1.9 43 152-194 10-52 (73)
110 1adr_A P22 C2 repressor; trans 25.0 16 0.00056 23.1 0.2 23 175-197 21-43 (76)
111 2b5a_A C.BCLI; helix-turn-heli 24.4 17 0.0006 23.1 0.2 23 175-197 26-48 (77)
112 3ulq_B Transcriptional regulat 24.3 36 0.0012 23.5 1.9 42 149-195 26-67 (90)
113 1x3u_A Transcriptional regulat 24.1 13 0.00045 24.2 -0.5 38 153-195 17-54 (79)
114 2p7v_B Sigma-70, RNA polymeras 23.9 13 0.00045 23.9 -0.5 43 152-194 5-47 (68)
115 2hxo_A Putative TETR-family tr 23.8 58 0.002 25.7 3.3 49 149-197 12-61 (237)
116 1r69_A Repressor protein CI; g 23.4 20 0.00067 22.3 0.3 23 175-197 17-39 (69)
117 3bd1_A CRO protein; transcript 22.8 15 0.00052 24.1 -0.4 23 175-197 14-36 (79)
118 3omt_A Uncharacterized protein 22.8 20 0.0007 22.8 0.3 23 175-197 24-46 (73)
119 3fiw_A Putative TETR-family tr 22.8 31 0.001 26.8 1.4 46 152-197 24-70 (211)
120 2rnj_A Response regulator prot 22.7 12 0.0004 25.7 -1.0 40 152-196 29-68 (91)
121 2kpj_A SOS-response transcript 21.7 21 0.00072 24.2 0.2 23 175-197 25-47 (94)
122 1y7y_A C.AHDI; helix-turn-heli 21.6 22 0.00077 22.3 0.3 23 175-197 29-51 (74)
123 3him_A Probable transcriptiona 21.6 39 0.0013 24.8 1.7 39 158-196 22-60 (211)
124 1fi6_A EH domain protein REPS1 21.2 40 0.0014 22.6 1.6 41 153-193 3-49 (92)
125 3kz9_A SMCR; transcriptional r 21.2 38 0.0013 24.8 1.6 37 160-196 25-61 (206)
126 3ccy_A Putative TETR-family tr 21.2 59 0.002 24.1 2.7 39 158-196 20-58 (203)
127 3b7h_A Prophage LP1 protein 11 21.1 22 0.00076 22.7 0.2 23 175-197 23-45 (78)
128 3plu_A Ubiquitin-like modifier 20.6 54 0.0018 23.5 2.2 24 174-197 47-70 (93)
129 3dcf_A Transcriptional regulat 20.2 26 0.0009 26.0 0.5 39 158-196 37-75 (218)
130 3mzy_A RNA polymerase sigma-H 20.1 24 0.00082 25.4 0.2 39 152-195 109-147 (164)
131 2x48_A CAG38821; archeal virus 20.0 20 0.00069 21.8 -0.2 36 155-194 18-53 (55)
132 3kz3_A Repressor protein CI; f 20.0 25 0.00084 23.0 0.2 24 175-198 28-51 (80)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=5.4e-19 Score=127.61 Aligned_cols=56 Identities=16% Similarity=0.336 Sum_probs=53.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh----CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQ----HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~----~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+++||+|+.|+.+|+..|+..|.. ++||+. +|++||..|+|+++||+|||||||+|
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK 75 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHS 75 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcC
Confidence 457889999999999999999999 999999 99999999999999999999999997
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.6e-19 Score=126.14 Aligned_cols=57 Identities=32% Similarity=0.473 Sum_probs=53.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+.+|.|+.|+..|+.+||..|..++||+. ++..||..|+|+++||+|||||||+|
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 4457888999999999999999999999999 99999999999999999999999985
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=9e-19 Score=122.68 Aligned_cols=57 Identities=25% Similarity=0.528 Sum_probs=53.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+..+|+|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHH
Confidence 3457889999999999999999999999999 99999999999999999999999986
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=2.1e-18 Score=124.76 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=52.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh-----CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQ-----HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~-----~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+++||+|+.|+.+|+.+|| .|.. ++||+. +|++||.+|+|+++||+|||||||+|
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k 75 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccC
Confidence 34578899999999999999 7999 999999 99999999999999999999999997
No 5
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=121.59 Aligned_cols=57 Identities=28% Similarity=0.483 Sum_probs=53.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+..+|+|+.|+..|+.+||..|..++||+. +++.||..+||+++||++||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3457889999999999999999999999999 99999999999999999999999986
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-18 Score=121.62 Aligned_cols=56 Identities=38% Similarity=0.628 Sum_probs=53.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+..+|+|+.|+..|+.+||..|..++||+. ++..||..+||++.||+|||||||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccc
Confidence 457889999999999999999999999999 99999999999999999999999975
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=124.13 Aligned_cols=57 Identities=30% Similarity=0.497 Sum_probs=53.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.++.+|.|+.|+..|+.+||..|..++||+. ++..||..|||+++||+|||||||+|
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 76 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK 76 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999 99999999999999999999999986
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-18 Score=124.12 Aligned_cols=57 Identities=32% Similarity=0.482 Sum_probs=53.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+.+|.|+.|+.+|+.+|+..|..++||+. +++.||.+|+|+++||+|||||||+|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 3457888999999999999999999999999 99999999999999999999999975
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-18 Score=121.13 Aligned_cols=57 Identities=28% Similarity=0.453 Sum_probs=53.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.++.+|+|+.|+..|+.+||..|..++||+. ++..||..+||++.||+|||||||+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQK 61 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHH
Confidence 4557889999999999999999999999999 99999999999999999999999975
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.72 E-value=1.2e-18 Score=119.18 Aligned_cols=56 Identities=32% Similarity=0.560 Sum_probs=48.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
|..+|.|+.|+..|+.+||..|..++||+. ++..||..+||++.||+|||||||+|
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcc
Confidence 346789999999999999999999999999 99999999999999999999999986
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=1.1e-18 Score=119.95 Aligned_cols=55 Identities=35% Similarity=0.564 Sum_probs=50.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 145 VNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 145 ~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+|.|+.|+..|+.+||..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMK 57 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhh
Confidence 46889999999999999999999999999 99999999999999999999999985
No 12
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.71 E-value=2.6e-18 Score=122.53 Aligned_cols=57 Identities=33% Similarity=0.617 Sum_probs=53.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+.+|.|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 63 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 63 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcc
Confidence 3446788999999999999999999999999 99999999999999999999999975
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.4e-18 Score=122.63 Aligned_cols=56 Identities=30% Similarity=0.542 Sum_probs=53.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++.+|+|+.|+..|+.+||..|..++||+. ++..||..++|+++||+|||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 61 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHH
Confidence 457889999999999999999999999999 99999999999999999999999985
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-18 Score=120.41 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=53.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+..+|+|+.|+..|+.+||..|..++||+. ++..||..+||++.||++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHH
Confidence 457889999999999999999999999999 99999999999999999999999975
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2.9e-18 Score=123.11 Aligned_cols=56 Identities=30% Similarity=0.580 Sum_probs=53.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+..+|+|+.|+..|+.+||..|..++||+. ++..||..|+|+++||+|||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 61 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHH
Confidence 457889999999999999999999999999 99999999999999999999999985
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=3.4e-18 Score=119.75 Aligned_cols=55 Identities=38% Similarity=0.710 Sum_probs=52.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 145 VNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 145 ~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+++|++|+..|+.+||..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhh
Confidence 46788899999999999999999999999 99999999999999999999999975
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=2.2e-18 Score=117.57 Aligned_cols=54 Identities=31% Similarity=0.629 Sum_probs=48.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+|.|+.|+..|+.+||..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAK 57 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccc
Confidence 5788999999999999999999999999 99999999999999999999999975
No 18
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-18 Score=121.79 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=53.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
...+|.|+.|+.+|+.+||..|..++||+. ++..||.+++|+++||+|||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 61 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHH
Confidence 447889999999999999999999999999 99999999999999999999999975
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=3.2e-18 Score=115.41 Aligned_cols=53 Identities=34% Similarity=0.594 Sum_probs=51.0
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
||+|+.|+..|+.+||..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 54 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhh
Confidence 578899999999999999999999999 99999999999999999999999985
No 20
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=5.9e-18 Score=120.67 Aligned_cols=56 Identities=39% Similarity=0.586 Sum_probs=53.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+..+|+|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 67 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 447789999999999999999999999999 99999999999999999999999975
No 21
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.69 E-value=3.6e-18 Score=114.60 Aligned_cols=54 Identities=35% Similarity=0.602 Sum_probs=51.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++|.|+.|+..|+.+|+..|..++||+. ++..||..+||++.||++||||||+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhcc
Confidence 4688999999999999999999999999 99999999999999999999999985
No 22
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-18 Score=118.98 Aligned_cols=58 Identities=33% Similarity=0.532 Sum_probs=54.1
Q ss_pred cCCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 142 EDGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 142 ~~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..++.+|.|+.|+..|+.+|+..|..++||+. ++..||..+||++.||+|||||||+|
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 63 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAK 63 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHH
Confidence 34557888999999999999999999999999 99999999999999999999999975
No 23
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=3.1e-18 Score=116.60 Aligned_cols=56 Identities=34% Similarity=0.648 Sum_probs=46.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++.++.|+.|+..|+.+|+..|..++||+. ++..||..+||++.||++||||||+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999 99999999999999999999999975
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=7.4e-18 Score=119.11 Aligned_cols=55 Identities=31% Similarity=0.553 Sum_probs=52.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 145 VNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 145 ~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+|+|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 61 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence 46889999999999999999999999999 99999999999999999999999975
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=5.7e-18 Score=117.18 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=52.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+|.|+.|+..|+.+||..|..++||+. ++..||..+||++.||++||||||+|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHH
Confidence 5788999999999999999999999999 99999999999999999999999975
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-18 Score=122.21 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=53.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhC----CCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQH----STLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~----~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++.+|.|+.|+.+|+.+||..|..+ +||+. ++++||.++||+++||+|||||||+|
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k 66 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRK 66 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHH
Confidence 4578889999999999999999999 99999 99999999999999999999999975
No 27
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.68 E-value=2.4e-18 Score=119.88 Aligned_cols=56 Identities=32% Similarity=0.563 Sum_probs=53.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
|+.+|.|+.|+..|+.+||..|..++||+. ++..||..+||++.||++||||||+|
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 57 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHH
Confidence 457899999999999999999999999999 99999999999999999999999975
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.68 E-value=5.3e-18 Score=118.34 Aligned_cols=54 Identities=33% Similarity=0.580 Sum_probs=51.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++|.|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 56 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 56 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhH
Confidence 4788999999999999999999999999 99999999999999999999999975
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=7.4e-18 Score=121.10 Aligned_cols=56 Identities=32% Similarity=0.544 Sum_probs=52.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+.+|+|+.|+..|+.+|+..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 72 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 72 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhh
Confidence 457888999999999999999999999999 99999999999999999999999975
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=7.3e-18 Score=114.60 Aligned_cols=53 Identities=36% Similarity=0.601 Sum_probs=50.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
||.|+.|+..|+.+|+..|..++||+. ++..||..+||++.||++||||||+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK 55 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhH
Confidence 678999999999999999999999999 99999999999999999999999975
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=8.1e-18 Score=117.29 Aligned_cols=54 Identities=37% Similarity=0.552 Sum_probs=51.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++|.|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 56 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 56 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHH
Confidence 5788999999999999999999999999 99999999999999999999999975
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.67 E-value=7.3e-18 Score=123.02 Aligned_cols=57 Identities=33% Similarity=0.608 Sum_probs=49.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+..+|+|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 82 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHH
Confidence 3457889999999999999999999999999 99999999999999999999999985
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.67 E-value=9.5e-18 Score=120.87 Aligned_cols=56 Identities=34% Similarity=0.623 Sum_probs=48.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+..+|+|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 74 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhh
Confidence 446889999999999999999999999999 99999999999999999999999985
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=1.2e-17 Score=116.36 Aligned_cols=54 Identities=33% Similarity=0.642 Sum_probs=51.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++|.|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 56 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK 56 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhh
Confidence 5788999999999999999999999999 99999999999999999999999975
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-17 Score=115.37 Aligned_cols=54 Identities=33% Similarity=0.574 Sum_probs=51.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.||+|+.|+..|+.+|+..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAK 55 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHH
Confidence 3788999999999999999999999999 99999999999999999999999975
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=116.54 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=49.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.++|++|+.+|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTH
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHH
Confidence 356667999999999999999999999 99999999999999999999999985
No 37
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.66 E-value=2.5e-17 Score=121.73 Aligned_cols=56 Identities=36% Similarity=0.580 Sum_probs=52.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+.+|+|+.|+..|+.+||..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTK 71 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhh
Confidence 446788999999999999999999999999 99999999999999999999999975
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.7e-17 Score=116.72 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=50.3
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQ-HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~-~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.++|+.|+..|+.+||..|.. ++||+. ++..||..+||+++||+|||||||+|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 56 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHH
Confidence 468889999999999999996 999999 99999999999999999999999975
No 39
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.6e-17 Score=115.96 Aligned_cols=56 Identities=30% Similarity=0.387 Sum_probs=52.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++.+++|+.|+..|+.+|+.+|.. ++||+. +++.||..+||+++||++||||||+|
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 64 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhh
Confidence 457788999999999999999976 999999 99999999999999999999999975
No 40
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4.3e-17 Score=114.75 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=51.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh-CCCCcH-HHHHHHHHhCCCCCcceecccccc
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQ-HSTLNP-QKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~-~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..++|.|+.|+.+|+.+|+..|+. ++||+. .|+.||.++||++++|+|||||||
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR 60 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccce
Confidence 347899999999999999999999 999999 999999999999999999999998
No 41
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=4.1e-17 Score=112.09 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=51.8
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESF---KQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F---~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+++|+.|+..|+.+|+.+| ..++||+. ++..||..+||++.||++||||||+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 60 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 57888999999999999999 89999999 99999999999999999999999986
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.8e-17 Score=118.03 Aligned_cols=52 Identities=29% Similarity=0.309 Sum_probs=49.0
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 148 RKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 148 R~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+|..|+.+|+.+|+..|..++||+. +|++||..+||+++||+|||||||+|
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k 57 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHH
Confidence 45667999999999999999999999 99999999999999999999999975
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2.8e-17 Score=116.01 Aligned_cols=53 Identities=26% Similarity=0.418 Sum_probs=50.3
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQ-HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~-~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+++|+.|+..|+.+||..|.. ++||+. ++..||..+||+++||+|||||||+|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k 57 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 57 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 578899999999999999995 999999 99999999999999999999999975
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.9e-17 Score=121.79 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=50.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+|+|++|+..|+.+|+..|..++||+. ++++||..+||+++||+|||||||+|
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 79 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYA 79 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhH
Confidence 5688899999999999999999999999 99999999999999999999999975
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.7e-17 Score=122.13 Aligned_cols=56 Identities=32% Similarity=0.539 Sum_probs=49.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+..+++|+.|+..|+.+||..|..++||+. ++..||..|||+++||+|||||||+|
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 88 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK 88 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHH
Confidence 457889999999999999999999999999 99999999999999999999999985
No 46
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.64 E-value=2.5e-17 Score=111.95 Aligned_cols=51 Identities=31% Similarity=0.552 Sum_probs=46.9
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 149 KKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.|+.|+..|+.+||..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 53 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAK 53 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhh
Confidence 5788999999999999999999999 99999999999999999999999985
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-17 Score=114.88 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=51.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.++.|+.|+.+|+.+|+..|..++||+. ++++||..+||+++||++||||||+|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 60 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN 60 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHH
Confidence 4678999999999999999999999999 99999999999999999999999975
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-17 Score=115.62 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=50.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..+.|++|+.+|+.+||..|..++||+. +++.||..+||+++||++||||||+|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 62 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYH 62 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHH
Confidence 4556888999999999999999999999 99999999999999999999999975
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=3.5e-17 Score=110.00 Aligned_cols=49 Identities=35% Similarity=0.607 Sum_probs=45.9
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 151 LRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+.|+..|+.+||..|..++||+. ++..||..+||+++||++||||||+|
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 51 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTK 51 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhh
Confidence 46999999999999999999999 99999999999999999999999985
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.62 E-value=7.1e-17 Score=113.72 Aligned_cols=54 Identities=30% Similarity=0.513 Sum_probs=51.3
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESF---KQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F---~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.||+|+.|+..|+.+|+.+| ..++||+. ++..||..+||++.||++||||||+|
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r 58 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 36889999999999999999 89999999 99999999999999999999999975
No 51
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=7e-17 Score=119.45 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=53.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhC---------------CCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLN---------------LRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~Lg---------------Ls~rQVqvWFQNRRaK 199 (199)
.+.+|.|+.|+..|+.+||..|..++||+. +++.||..|+ |++.||++||||||+|
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k 76 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 76 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999 9999999999 9999999999999975
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=2.6e-17 Score=116.51 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=49.9
Q ss_pred CCCCCCcCCHHHHHHHHHHH-hhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESF-KQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F-~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..++|.+++.+|+.+||..| ..++||+. ++.+||.++||+++||+|||||||+|
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k 63 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 63 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccC
Confidence 35666778899999999999 99999999 99999999999999999999999985
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-16 Score=115.09 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=51.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+.+++|+.|+.+|+.+|+.+|.. ++||+. +++.||..+||+++||++||||||+|
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r 64 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhh
Confidence 346788899999999999999977 599999 99999999999999999999999975
No 54
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=9.7e-17 Score=116.80 Aligned_cols=56 Identities=27% Similarity=0.451 Sum_probs=52.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..++++|++|+..|+.+|+.+|.. ++||+. ++..||..+||+++||++||||||+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r 84 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 336677889999999999999999 999999 99999999999999999999999975
No 55
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=109.96 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=46.3
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 151 LRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..++..|+.+||..|..++||+. +|.+||..+||+++||+|||||||+|
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak 57 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCC
Confidence 34568999999999999999999 99999999999999999999999987
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.61 E-value=1.1e-16 Score=108.59 Aligned_cols=51 Identities=29% Similarity=0.497 Sum_probs=48.5
Q ss_pred CCCcCCHHHHHHHHHHHhh---CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 149 KKLRLTKEQSALLEESFKQ---HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~---~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+|++|+..|+.+|+..|.. ++||+. ++..||.++||+++||++||||||+|
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r 55 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcc
Confidence 4678999999999999999 999999 99999999999999999999999975
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.61 E-value=1.1e-16 Score=116.13 Aligned_cols=54 Identities=30% Similarity=0.513 Sum_probs=50.2
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 146 NARKKLRLTKEQSALLEESF---KQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F---~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.||+|+.|+..|+.+|+.+| ..++||+. ++..||..+||++.||++||||||+|
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 58 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 36889999999999999999 89999999 99999999999999999999999975
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-16 Score=115.25 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=47.6
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 149 KKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++..|+.+|+.+||..|..++||+. +++.||..+||+++||+|||||||+|
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k 67 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKL 67 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHH
Confidence 3344999999999999999999999 99999999999999999999999975
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.60 E-value=1e-16 Score=129.80 Aligned_cols=57 Identities=28% Similarity=0.460 Sum_probs=46.1
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+++||+|+.|+..|+.+||..|..++||+. +|..||..++|+++||+|||||||+|
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 153 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQK 153 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHH
Confidence 3457788999999999999999999999999 99999999999999999999999985
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.60 E-value=1.5e-16 Score=126.53 Aligned_cols=57 Identities=30% Similarity=0.521 Sum_probs=50.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 143 ~g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+++||+|+.|+..|+.+||..|..++||+. +|..||..+||+++||+|||||||+|
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 141 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQR 141 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhh
Confidence 3457788999999999999999999999999 99999999999999999999999975
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.8e-16 Score=116.92 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=47.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 151 LRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..|+.+|+.+||..|..++||+. +|.+||..|||+++||+|||||||+|
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k 65 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchH
Confidence 37999999999999999999999 99999999999999999999999975
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.59 E-value=2.1e-16 Score=114.27 Aligned_cols=53 Identities=28% Similarity=0.459 Sum_probs=48.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhh---CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQ---HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+++|++|+..|+.+|+.+|.. ++||+. ++..||..+||+++||++||||||+|
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r 59 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcc
Confidence 455667999999999999999 999999 99999999999999999999999975
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.58 E-value=4.2e-16 Score=124.12 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=53.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+++||+|+.|+..|+.+||..|..++||+. ++..||.++||+++||+|||||||+|
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQT 147 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhc
Confidence 457788999999999999999999999999 99999999999999999999999985
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.57 E-value=3.1e-16 Score=126.15 Aligned_cols=55 Identities=27% Similarity=0.503 Sum_probs=49.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 145 VNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 145 ~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++||+|+.|+..|+.+||..|..++||+. +|..||..+||+++||+|||||||+|
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 155 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 155 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhh
Confidence 46889999999999999999999999999 99999999999999999999999985
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.57 E-value=3.9e-16 Score=117.08 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=48.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHH------------------hC---CCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQ------------------LN---LRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~------------------Lg---Ls~rQVqvWFQNRRaK 199 (199)
.+.||.|+.|+..|+.+||..|..++||+. +|++||.. || |++.+|+|||||||+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 457888999999999999999999999999 99999999 88 9999999999999985
No 66
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=1.9e-16 Score=110.22 Aligned_cols=45 Identities=27% Similarity=0.562 Sum_probs=41.9
Q ss_pred HHHHHHHHHHH-hhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 155 KEQSALLEESF-KQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 155 ~~Ql~~Le~~F-~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+.|+.+||+.| ..++||+. +|.+||.+|+|+++||+|||||||+|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k 55 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 45799999999 67899999 99999999999999999999999975
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=3.6e-16 Score=125.26 Aligned_cols=56 Identities=30% Similarity=0.432 Sum_probs=53.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+++||+|+.|+..|+..|+..|..++||+. ++..||..+||+++||+|||||||+|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k 150 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccc
Confidence 457888999999999999999999999999 99999999999999999999999985
No 68
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=8.6e-16 Score=123.54 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=50.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.+.||+|+.|+..|+.+|+..|..++||+. +|..||..+||+++||+|||||||+|
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r 151 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRR 151 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcc
Confidence 446889999999999999999999999999 99999999999999999999999986
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1e-15 Score=115.48 Aligned_cols=56 Identities=20% Similarity=0.447 Sum_probs=52.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHh---------------------CCCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQL---------------------NLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~L---------------------gLs~rQVqvWFQNRRaK 199 (199)
++.||.|+.|++.|+.+|+..|..++||+. +|++||..| .|++.+|+|||||||+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 457889999999999999999999999999 999999999 79999999999999975
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.55 E-value=6.8e-16 Score=108.70 Aligned_cols=49 Identities=35% Similarity=0.623 Sum_probs=46.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 151 LRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
..++..|+..||..|..++||+. +|.+||..+||+++||+|||||||+|
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak 58 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYK 58 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhh
Confidence 45899999999999999999999 99999999999999999999999975
No 71
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.54 E-value=7.2e-16 Score=107.85 Aligned_cols=47 Identities=32% Similarity=0.409 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 153 LTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
-+.+|+.+||..|..++||+. ++.+||..+||+++||++||||||+|
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k 58 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhh
Confidence 468999999999999999999 99999999999999999999999975
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=1.2e-14 Score=101.30 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHh---hCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 152 RLTKEQSALLEESFK---QHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~---~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
+|+.+|+.+|+.+|. .++||+. ++..||..+||+++||++||||||+|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 55 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHH
Confidence 689999999999999 9999999 99999999999999999999999975
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.38 E-value=2.7e-14 Score=118.71 Aligned_cols=56 Identities=18% Similarity=0.415 Sum_probs=50.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhC---------------------CCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLN---------------------LRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~Lg---------------------Ls~rQVqvWFQNRRaK 199 (199)
.+.||.|+.|+..|+.+|+..|..++||+. +|++||..++ |++.||++||||||+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 457889999999999999999999999999 9999999999 9999999999999975
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.7e-13 Score=96.74 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccC
Q 029106 155 KEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRA 198 (199)
Q Consensus 155 ~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRa 198 (199)
.+|+.+|+.+|..+++|+. ++..||..+||+.++|||||||||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 5789999999999999999 9999999999999999999999996
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.33 E-value=2.8e-13 Score=114.51 Aligned_cols=56 Identities=20% Similarity=0.413 Sum_probs=51.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhC---------------------CCCCcceeccccccCC
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLN---------------------LRPRQVEVWFQNRRAR 199 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~Lg---------------------Ls~rQVqvWFQNRRaK 199 (199)
.+.||.|+.|++.|+.+|+..|..++||+. +|++||..+| |++.||++||||||++
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 447888999999999999999999999999 9999999988 8999999999999985
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=9.9e-13 Score=115.90 Aligned_cols=53 Identities=32% Similarity=0.649 Sum_probs=50.0
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 147 ARKKLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
++.++.++..|+..|++.|+.++||+. +|++||.++||+++||+|||||||+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~ 419 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccc
Confidence 455677999999999999999999999 99999999999999999999999987
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.23 E-value=1.1e-12 Score=96.64 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHhh---CCCCcH-HHHHHHHHhCCCCCcceeccccccCC
Q 029106 152 RLTKEQSALLEESFKQ---HSTLNP-QKQALARQLNLRPRQVEVWFQNRRAR 199 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~---~~~ps~-~r~~LA~~LgLs~rQVqvWFQNRRaK 199 (199)
.|+.++..+|+.+|.. ++||+. ++.+||.++||+++||++||||||+|
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R 62 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4899999999999976 899999 99999999999999999999999975
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.33 E-value=3.9e-08 Score=61.18 Aligned_cols=13 Identities=62% Similarity=1.380 Sum_probs=12.0
Q ss_pred CcceeccccccCC
Q 029106 187 RQVEVWFQNRRAR 199 (199)
Q Consensus 187 rQVqvWFQNRRaK 199 (199)
+||+|||||||+|
T Consensus 1 rQVkIWFQNRRaK 13 (37)
T 2nzz_A 1 RQIKIWFQNRRMK 13 (37)
T ss_dssp CCTTTTTTCSHHH
T ss_pred CCceeccHHHHHH
Confidence 6999999999986
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.54 E-value=0.0045 Score=43.29 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceeccccc
Q 029106 157 QSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 157 Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
-..+|+++|..++.+.. ..+.|+.+..|+..||+-||-.|
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 35789999999999999 99999999999999999999443
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=69.56 E-value=2.1 Score=27.35 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCcH-HHHHHHHHhCCCCCcceecccc
Q 029106 150 KLRLTKEQSALLEESFKQHSTLNP-QKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~ps~-~r~~LA~~LgLs~rQVqvWFQN 195 (199)
|..|+.++...+...+... .... ...++|.++|++..+|..|.+.
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 3458888766665444432 2212 3568999999999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=68.76 E-value=3.1 Score=30.27 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=34.9
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 148 RKKLRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 148 R~Rt~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
++|..|+.++...+-..+....... ..++|..+|++...|..|..+++
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~--~~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR--KGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC--HHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc--HHHHHHHhCCCHHHHHHHHhchh
Confidence 3567799999877766664444333 34689999999999999987643
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.03 E-value=4.9 Score=23.24 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
.++..+...+...+... + ...++|..+|++...|..|...-+
T Consensus 5 ~l~~~~~~~i~~~~~~g-~---s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V---SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C---CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHcC-C---CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 36666664444445322 1 245789999999999999986543
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.76 E-value=5.6 Score=27.36 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccc
Q 029106 147 ARKKLRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQ 194 (199)
++.+..|+.++.......+.. .. ...++|..+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~---s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE---SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC---CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC---CHHHHHHHHCcCHHHHHHHHH
Confidence 345567888886555455532 21 245789999999999999974
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=51.64 E-value=7.8 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 153 LTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
++.++...+...+... . ...++|..+|++...|..|+...
T Consensus 6 ~~~~~~~~i~~l~~~g--~--s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H--PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C--CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC--C--CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4555555554445432 2 24578999999999999998654
No 85
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=46.66 E-value=21 Score=24.89 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=34.0
Q ss_pred CCCcCCHHHHHHHHHHHh-----hCCCCcH-HHHHHHHHhC--CCCCcceeccc
Q 029106 149 KKLRLTKEQSALLEESFK-----QHSTLNP-QKQALARQLN--LRPRQVEVWFQ 194 (199)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~-----~~~~ps~-~r~~LA~~Lg--Ls~rQVqvWFQ 194 (199)
....++.+++..|+..|. .+.+.+. +...+...+| ++..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344588999999999983 4567888 8777777776 45677777764
No 86
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=46.42 E-value=18 Score=27.16 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=35.0
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhCCCCcH-HHHHHH-HHh--CCCCCcceeccccc
Q 029106 147 ARKKLRLTKEQSALLEESF-KQHSTLNP-QKQALA-RQL--NLRPRQVEVWFQNR 196 (199)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F-~~~~~ps~-~r~~LA-~~L--gLs~rQVqvWFQNR 196 (199)
+++|.++|-+|...+-.++ ..++.... +...+| .++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6788889999988888888 56665554 433332 267 67778888886553
No 87
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=38.36 E-value=19 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=29.6
Q ss_pred CCcCCHHHHHHHHHHH-hhC-CCCcH--HHHHHHHHhCCCCCcceeccc
Q 029106 150 KLRLTKEQSALLEESF-KQH-STLNP--QKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 150 Rt~ft~~Ql~~Le~~F-~~~-~~ps~--~r~~LA~~LgLs~rQVqvWFQ 194 (199)
+..|+.++....-..+ ... .+.+. ....+|..+|++..+|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3458888765444433 321 13332 456899999999999999964
No 88
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=37.20 E-value=55 Score=24.08 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCCcCCHHHHHHHHHHHh-----hCCCCcH-HHHHHHHHhCCCCC
Q 029106 149 KKLRLTKEQSALLEESFK-----QHSTLNP-QKQALARQLNLRPR 187 (199)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~-----~~~~ps~-~r~~LA~~LgLs~r 187 (199)
+|..++.+|+..|+..|. ...+.+. +...+.+.+|+.+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 455699999999999994 3567888 87777888886654
No 89
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.49 E-value=15 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 150 KLRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
...+++.+..+|...+... ...++|..++++...|+.+.++
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~-----s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF-----LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC-----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 3458999999997765322 3568899999999999988764
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.24 E-value=8.5 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 153 LTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
++..+..+|...|-... ...++|..+|++...|+.+...-
T Consensus 38 L~~~~r~vl~l~~~~g~----s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW----STAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHTSCC----CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 78888888877653221 35688999999999999887543
No 91
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=32.71 E-value=28 Score=23.81 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=28.2
Q ss_pred CcCCHHHHHHHHHHHhhC-CCCcHHHHHHHHHhCCCCCcceeccc
Q 029106 151 LRLTKEQSALLEESFKQH-STLNPQKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~-~~ps~~r~~LA~~LgLs~rQVqvWFQ 194 (199)
..|+.++....-..+... .. ...++|..+|++...|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~---s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA---SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS---CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC---hHHHHHHHHCcCHHHHHHHHH
Confidence 458887765554444321 11 355789999999999999974
No 92
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=32.08 E-value=39 Score=21.84 Aligned_cols=41 Identities=2% Similarity=-0.023 Sum_probs=30.4
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 151 LRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..++.+.+..+...... ...+||..+|++...|..|-++++
T Consensus 9 ~~~~g~~lr~~R~~~gl------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 35778887777654322 246789999999999999987765
No 93
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.84 E-value=11 Score=25.48 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 151 LRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
..++..+..+|...+... ...++|..+|++...|+.+..+
T Consensus 20 ~~Lt~~e~~vl~l~~~g~-----s~~eIA~~l~is~~tV~~~l~r 59 (82)
T 1je8_A 20 NQLTPRERDILKLIAQGL-----PNKMIARRLDITESTVKVHVKH 59 (82)
T ss_dssp GGSCHHHHHHHHHHTTTC-----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 348899998888753221 3568899999999999887654
No 94
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.78 E-value=13 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
.++..+..+|...+... ...++|..+|++...|+.+..+
T Consensus 27 ~Lt~~e~~vl~l~~~g~-----s~~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL-----TNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp CCCHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 48899999988764332 2467899999999999887654
No 95
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.58 E-value=9.6 Score=24.17 Aligned_cols=40 Identities=13% Similarity=-0.065 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
.+++.+..+|...|-... ...++|..+|++...|+.|...
T Consensus 15 ~L~~~~r~il~l~~~~g~----s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL----SYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 377888888887663221 3457899999999999887654
No 96
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.49 E-value=11 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 97
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=30.30 E-value=19 Score=27.77 Aligned_cols=39 Identities=5% Similarity=0.087 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 158 SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 158 l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
+......|....|-......||+..|++...|-.+|.++
T Consensus 36 l~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 36 LSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCCCH
Confidence 455566677777765556688999999999999999876
No 98
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.18 E-value=28 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCCcceecccc
Q 029106 175 KQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQN 195 (199)
...+|..+|++..+++.|+-.
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECC
T ss_pred HHHHHHHhCCCcccEEEEEee
Confidence 567899999999999999843
No 99
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=29.24 E-value=13 Score=23.01 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 100
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.75 E-value=0.98 Score=35.13 Aligned_cols=30 Identities=0% Similarity=-0.063 Sum_probs=21.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCcH
Q 029106 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP 173 (199)
Q Consensus 144 g~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~ 173 (199)
...||.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 346788899999999999999999998864
No 101
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.60 E-value=14 Score=23.19 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 102
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.50 E-value=14 Score=23.68 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=29.7
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 151 LRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
..+++.+..+|...+.. + ...++|..+|++...|+.++.+
T Consensus 10 ~~L~~~e~~il~~~~~g--~---s~~eIA~~l~is~~tV~~~~~~ 49 (74)
T 1fse_A 10 PLLTKREREVFELLVQD--K---TTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp CCCCHHHHHHHHHHTTT--C---CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 45889999988874322 2 3457899999999999887754
No 103
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.48 E-value=90 Score=23.00 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=29.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 151 LRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
..++.++...+...+... + ...++|..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~---s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V---RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C---CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C---CHHHHHHHHCcCHHHHHHHHHH
Confidence 357777766665555432 1 2446799999999999999864
No 104
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.05 E-value=15 Score=23.46 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 105
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.99 E-value=32 Score=24.52 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=29.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 151 LRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
..++.++...+...+... . ...++|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~---s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V---SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C---CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C---CHHHHHHHHCcCHHHHHHHHHc
Confidence 347777766666666432 1 2456799999999999999864
No 106
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=26.39 E-value=25 Score=26.53 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 158 SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 158 l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
+......|....|-......||++.|++..-|-.+|.++.
T Consensus 34 l~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 34 VNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCCHH
Confidence 3444455777777554567899999999999999998863
No 107
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=26.29 E-value=41 Score=24.20 Aligned_cols=40 Identities=3% Similarity=-0.001 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
.++.+++..|...... ...+||..+|++...|..|-++++
T Consensus 70 ~~~~~~l~~~R~~~gl------sq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSL------TQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTTC------CHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 3667777776654322 245789999999999999988765
No 108
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.18 E-value=20 Score=23.86 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHh-----hCCCCcH-HHHHHHHHhCCCCCcceeccc
Q 029106 152 RLTKEQSALLEESFK-----QHSTLNP-QKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~-----~~~~ps~-~r~~LA~~LgLs~rQVqvWFQ 194 (199)
.++..+...|...|. ...+++. +...+...+|++..+|+.+|+
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 477888888888883 3456777 777777788888777777764
No 109
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=25.00 E-value=35 Score=22.03 Aligned_cols=43 Identities=5% Similarity=0.057 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQ 194 (199)
.+++.+..+|...|-....-...-.++|..+|++...|+.|..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3788888899888741100001345889999999999988764
No 110
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.96 E-value=16 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999988765
No 111
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.40 E-value=17 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45789999999999999998765
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.33 E-value=36 Score=23.50 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=30.0
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 149 KKLRLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
....++..+..+|.-.++.. ...++|..|+++.+.|+...++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~-----s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF-----TNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34458999999998776322 3567899999999988876544
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.11 E-value=13 Score=24.23 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 153 LTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
+++.+..+|...|.. + ...++|..+|++...|+.+..+
T Consensus 17 L~~~e~~vl~l~~~g--~---s~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 17 LSERERQVLSAVVAG--L---PNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp HCHHHHHHHHHHTTT--C---CHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC--C---CHHHHHHHHCcCHHHHHHHHHH
Confidence 677777777764321 1 3457899999999998887654
No 114
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=23.87 E-value=13 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQ 194 (199)
.+++.+..+|...|-...+-...-.++|..+|++...|+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3678888888887732111111356789999999999988754
No 115
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=23.80 E-value=58 Score=25.74 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=32.6
Q ss_pred CCCcCCHHH-HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 149 KKLRLTKEQ-SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 149 ~Rt~ft~~Q-l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
.+...+.++ +..-...|....|-......||+++|++..-|-..|.||-
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHH
Confidence 333455554 3444455777776554566889999999999999998863
No 116
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.37 E-value=20 Score=22.28 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999988765
No 117
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.84 E-value=15 Score=24.07 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 45799999999999999987765
No 118
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=22.83 E-value=20 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998764
No 119
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=22.76 E-value=31 Score=26.83 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=32.1
Q ss_pred cCCHHH-HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccccc
Q 029106 152 RLTKEQ-SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 152 ~ft~~Q-l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+.++ +......|....|-......||.++|++..-|-.+|.+|.
T Consensus 24 ~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~ 70 (211)
T 3fiw_A 24 KMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKR 70 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHH
T ss_pred ccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 344444 4444555766666444566889999999999999998863
No 120
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.71 E-value=12 Score=25.68 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
.++..+..+|...+... ...++|..+|++...|+.+..+-
T Consensus 29 ~Lt~~e~~vl~l~~~g~-----s~~eIA~~l~is~~tV~~~l~r~ 68 (91)
T 2rnj_A 29 MLTEREMEILLLIAKGY-----SNQEIASASHITIKTVKTHVSNI 68 (91)
T ss_dssp GCCSHHHHHHHHHHTTC-----CTTHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 48888888887754322 23478999999999998877543
No 121
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.75 E-value=21 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.511 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999998765
No 122
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.63 E-value=22 Score=22.31 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999988764
No 123
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=21.56 E-value=39 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 158 SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 158 l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
+......|....|-......||++.|++...+-.+|.|+
T Consensus 22 l~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 22 RAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSH
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCH
Confidence 344445577777765456788999999999999999886
No 124
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.23 E-value=40 Score=22.63 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHhh-----CCCCcH-HHHHHHHHhCCCCCcceecc
Q 029106 153 LTKEQSALLEESFKQ-----HSTLNP-QKQALARQLNLRPRQVEVWF 193 (199)
Q Consensus 153 ft~~Ql~~Le~~F~~-----~~~ps~-~r~~LA~~LgLs~rQVqvWF 193 (199)
++.++...++..|.. ..+.+. +...+...+|++..+++.+|
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 466777777777742 345666 66666666777766655444
No 125
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=21.17 E-value=38 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 160 LLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 160 ~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
.....|....|-......||+..|++..-|-.+|.++
T Consensus 25 aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 25 IALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSH
T ss_pred HHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCH
Confidence 3344477777765556688999999999999999886
No 126
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.16 E-value=59 Score=24.10 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 158 SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 158 l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
+......|..+.|-.....+||+..|++...+-.+|.++
T Consensus 20 l~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 20 IERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCH
Confidence 344455688887766556788999999999999999886
No 127
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=21.10 E-value=22 Score=22.66 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCcceecccccc
Q 029106 175 KQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998775
No 128
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=20.57 E-value=54 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCCcceecccccc
Q 029106 174 QKQALARQLNLRPRQVEVWFQNRR 197 (199)
Q Consensus 174 ~r~~LA~~LgLs~rQVqvWFQNRR 197 (199)
-++.++.+.|++..|++.+|+.|-
T Consensus 47 LK~~I~~k~Gip~~qQrLif~Gk~ 70 (93)
T 3plu_A 47 FKKVLSLQIGTQPNKIVLQKGGSV 70 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEE
T ss_pred HHHHHHHHhCCCHHHEEEEeCCEE
Confidence 367789999999999999998764
No 129
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=20.24 E-value=26 Score=26.01 Aligned_cols=39 Identities=10% Similarity=0.292 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccccc
Q 029106 158 SALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQNR 196 (199)
Q Consensus 158 l~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQNR 196 (199)
+......|....|-......||+..|++..-+-.+|.++
T Consensus 37 l~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 37 IKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 344445577777655456788999999999999999886
No 130
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.07 E-value=24 Score=25.44 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceecccc
Q 029106 152 RLTKEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQN 195 (199)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQN 195 (199)
.+++.+..++. .|-. .+ ...++|..+|++...|+.+...
T Consensus 109 ~L~~~~r~v~~-~~~~-g~---s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-GY---SYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHTT-TC---CHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-CC---CHHHHHHHHCCCHHHHHHHHHH
Confidence 46777777777 3321 11 3568899999999999887754
No 131
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.03 E-value=20 Score=21.79 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHhCCCCCcceeccc
Q 029106 155 KEQSALLEESFKQHSTLNPQKQALARQLNLRPRQVEVWFQ 194 (199)
Q Consensus 155 ~~Ql~~Le~~F~~~~~ps~~r~~LA~~LgLs~rQVqvWFQ 194 (199)
..+...+...+.. .+ ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~---s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY---TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC---CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC---CHHHHHHHHCcCHHHHHHHHH
Confidence 5555455444432 22 245789999999999999975
No 132
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.01 E-value=25 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCCcceeccccccC
Q 029106 175 KQALARQLNLRPRQVEVWFQNRRA 198 (199)
Q Consensus 175 r~~LA~~LgLs~rQVqvWFQNRRa 198 (199)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999987753
Done!