BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029107
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 120/154 (77%)
Query: 5 TMSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLES 64
+M+ V + NV VLDNP+PF +PFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+S
Sbjct: 25 SMAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDS 84
Query: 65 VLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGD 124
VLVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 85 VLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTE 144
Query: 125 EQLREEPPQKVLIDTVQRNILSDKPRVTKFPINF 158
+LRE PP K +QRNIL+ PRVT+F IN+
Sbjct: 145 TELRENPPVKPDFSKLQRNILASNPRVTRFHINW 178
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 119/153 (77%)
Query: 6 MSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESV 65
M+ V + NV VLDNP+PF +PFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+SV
Sbjct: 4 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 63
Query: 66 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDE 125
LVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 64 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 123
Query: 126 QLREEPPQKVLIDTVQRNILSDKPRVTKFPINF 158
+LRE PP K +QRNIL+ PRVT+F IN+
Sbjct: 124 ELRENPPVKPDFSKLQRNILASNPRVTRFHINW 156
>pdb|3AAD|B Chain B, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
pdb|3AAD|D Chain D, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 158
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 119/153 (77%)
Query: 6 MSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESV 65
M+ V + NV VLDNP+PF +PFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+SV
Sbjct: 4 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 63
Query: 66 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDE 125
LVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 64 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 123
Query: 126 QLREEPPQKVLIDTVQRNILSDKPRVTKFPINF 158
+LRE PP K +QRNIL+ PRVT+F IN+
Sbjct: 124 ELRENPPVKPDFSKLQRNILASNPRVTRFHINW 156
>pdb|1TEY|A Chain A, Nmr Structure Of Human Histone Chaperone, Asf1a
pdb|2IIJ|A Chain A, Structure Of Human Asf1a In Complex With Histone H3
Length = 158
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 119/154 (77%)
Query: 5 TMSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLES 64
M+ V + NV VLDNP+PF +PFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+S
Sbjct: 2 AMAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDS 61
Query: 65 VLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGD 124
VLVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 62 VLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTE 121
Query: 125 EQLREEPPQKVLIDTVQRNILSDKPRVTKFPINF 158
+LRE PP K +QRNIL+ PRVT+F IN+
Sbjct: 122 TELRENPPVKPDFSKLQRNILASNPRVTRFHINW 155
>pdb|2YGV|A Chain A, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|B Chain B, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|C Chain C, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|D Chain D, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
Length = 158
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 114/152 (75%)
Query: 5 TMSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLES 64
MS V++ + VL+NPA F P++FEI++EC+ LK DLEWKL YVGS+ +DQ L+S
Sbjct: 2 AMSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDS 61
Query: 65 VLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGD 124
+LVGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+Y +
Sbjct: 62 ILVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDE 121
Query: 125 EQLREEPPQKVLIDTVQRNILSDKPRVTKFPI 156
E+LRE PP KV +D + RNIL++KPRVT+F I
Sbjct: 122 EELRENPPAKVQVDHIVRNILAEKPRVTRFNI 153
>pdb|1WG3|A Chain A, Structural Analysis Of Yeast Nucleosome-Assembly Factor
Cia1p
Length = 175
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 114/151 (75%)
Query: 6 MSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESV 65
MS V++ + VL+NPA F P++FEI++EC+ LK DLEWKL YVGS+ +DQ L+S+
Sbjct: 7 MSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSI 66
Query: 66 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDE 125
LVGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+Y +E
Sbjct: 67 LVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEE 126
Query: 126 QLREEPPQKVLIDTVQRNILSDKPRVTKFPI 156
+LRE PP KV +D + RNIL++KPRVT+F I
Sbjct: 127 ELRENPPAKVQVDHIVRNILAEKPRVTRFNI 157
>pdb|2IDC|A Chain A, Structure Of The Histone H3-Asf1 Chaperone Interaction
Length = 179
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 113/150 (75%)
Query: 7 STVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESVL 66
S V++ + VL+NPA F P++FEI++EC+ LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 4 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 63
Query: 67 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDEQ 126
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+Y +E+
Sbjct: 64 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 123
Query: 127 LREEPPQKVLIDTVQRNILSDKPRVTKFPI 156
LRE PP KV +D + RNIL++KPRVT+F I
Sbjct: 124 LRENPPAKVQVDHIVRNILAEKPRVTRFNI 153
>pdb|1ROC|A Chain A, Crystal Structure Of The Histone Deposition Protein Asf1
Length = 155
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 113/150 (75%)
Query: 7 STVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESVL 66
S V++ + VL+NPA F P++FEI++EC+ LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 3 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 62
Query: 67 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDEQ 126
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+Y +E+
Sbjct: 63 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 122
Query: 127 LREEPPQKVLIDTVQRNILSDKPRVTKFPI 156
LRE PP KV +D + RNIL++KPRVT+F I
Sbjct: 123 LRENPPAKVQVDHIVRNILAEKPRVTRFNI 152
>pdb|4EO5|A Chain A, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 169
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 113/150 (75%)
Query: 7 STVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESVL 66
S V++ + VL+NPA F P++FEI++EC+ LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 2 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 61
Query: 67 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDEQ 126
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+Y +E+
Sbjct: 62 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 121
Query: 127 LREEPPQKVLIDTVQRNILSDKPRVTKFPI 156
LRE PP KV +D + RNIL++KPRVT+F I
Sbjct: 122 LRENPPAKVQVDHIVRNILAEKPRVTRFNI 151
>pdb|2HUE|A Chain A, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 175
Score = 179 bits (454), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 113/150 (75%)
Query: 7 STVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESVL 66
S V++ + VL+NPA F P++FEI++EC+ LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 8 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 67
Query: 67 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGDEQ 126
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+Y +E+
Sbjct: 68 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 127
Query: 127 LREEPPQKVLIDTVQRNILSDKPRVTKFPI 156
LRE PP KV +D + RNIL++KPRVT+F I
Sbjct: 128 LRENPPAKVQVDHIVRNILAEKPRVTRFNI 157
>pdb|2CU9|A Chain A, Crystal Structure Of Histone Chaperone Cia1
pdb|2DZE|A Chain A, Crystal Structure Of Histone Chaperone Asf1 In Complex
With A C-Terminus Of Histone H3
pdb|2DZE|B Chain B, Crystal Structure Of Histone Chaperone Asf1 In Complex
With A C-Terminus Of Histone H3
pdb|2Z34|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
pdb|2Z34|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
pdb|2Z3F|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|C Chain C, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|D Chain D, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|E Chain E, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|F Chain F, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|G Chain G, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|H Chain H, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
Length = 161
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 115/159 (72%), Gaps = 6/159 (3%)
Query: 6 MSTVNIANVTVLDNPAPFLSPFQFEISYECVTPLKDDLEWKLIYVGSAEDETYDQLLESV 65
MS VNI +V VL+NPA F P++FEI++EC+ PLK DLEWKL YVGSA ++YDQ+L+++
Sbjct: 1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTL 60
Query: 66 LVGPVNVGNYRFVLQADPPDPSKIRE-EDIIGVTVLLLTCSYLGQEFVRVGYYVNNDYGD 124
LVGP+ +G +FV +ADPP+ + + D++GVTV+LL+C+Y EFVRVGYYVNN+
Sbjct: 61 LVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEG 120
Query: 125 EQLREE-----PPQKVLIDTVQRNILSDKPRVTKFPINF 158
L+E KV I V R+IL++KPRVT+F I +
Sbjct: 121 LNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQW 159
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 51 GSAE-DETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYLGQ 109
GS + DE YD L + VLVG +VG V+Q R+ IGV + T G+
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKT-CVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK 76
Query: 110 EFVRVGYYVNNDYGDEQLR 128
RV + + G E+ R
Sbjct: 77 ---RVKLQIWDTAGQERFR 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,132,866
Number of Sequences: 62578
Number of extensions: 207842
Number of successful extensions: 425
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 13
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)