BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029109
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 10 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 51
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 372
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 372
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 374
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
L+ +C IC E + V NC HS C C ++W R C
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIEC 90
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKD--LDRNDECGI 158
++F AII ++LE Q E + + ++ LS + L+ +C I
Sbjct: 23 KDFEAIIQAKNKELE-------------QTKEEKEKMQAQKEEVLSHMNDVLENELQCII 69
Query: 159 CMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
C E + V NC HS C C ++W R C
Sbjct: 70 CSEYFIEAVTLNCAHSFCSYCINEWMKRKIEC 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
L+ +C IC E + V NC HS C C ++W R C
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIEC 90
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 378
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLFA 193
C IC EN + + CGH +C +C W + Q C F
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLFA 193
C IC EN + + CGH +C +C W + Q C F
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
+CGICME + V C H+LC CF ++ C
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLC 52
>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 530
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 23/118 (19%)
Query: 34 RDYGGDFVQMRLSY-----SPFAPLVLFMIEWMDYSCTDTV----PSYL--GL-LNILVY 81
RD GGD ++ + F P L + E SCT + P L G+ LNI +
Sbjct: 63 RDLGGDTAELVKGHIFEAVERFKPEALLVGE----SCTAELIQDQPGSLAKGMGLNIPIV 118
Query: 82 KVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRV 139
+ +PA S KE FY +I R L E SE N+ + E R RV
Sbjct: 119 SLE---LPAYSKKENWGASETFYQLI----RGLLKEISEDSSNNAKQSWQEEGRRPRV 169
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLFA 193
C IC EN + + CGH +C +C W + Q C F
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 148 KDLDRNDECGICMENCT-KMVLPNCGH---SLCVNCFHDWNARSQSCLFAVA 195
K +D CGIC E M++P C H SLC+ F + + +C V
Sbjct: 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68
>pdb|3CE2|A Chain A, Crystal Structure Of Putative Peptidase From Chlamydophila
Abortus
Length = 618
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 73 LGLLNILVYKVYVDGMPALSSKERKATLREFYAIIYPSLRQLESEF 118
L L + Y VY P SKE+K T +E +IY SL L +E+
Sbjct: 306 LNLKDFHFYDVYA---PLSQSKEKKYTFQEAVDLIYTSLSPLGTEY 348
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNC 179
C IC++ K V +CGH+ C+ C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKC 46
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
Length = 200
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 36 YGGDFVQMRLSYSPFAPLVLFMIEWMDYS-CTDTVPS---YLGL-LNILVYKVYVDGMPA 90
YG +F + L L F I + +S C D P LGL LN L K + P
Sbjct: 30 YGNEFTEKNL-------LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 82
Query: 91 L----SSKERKATLREFYAIIYPSLRQLESEFSELEDNSKR 127
+++ A L+E+ + +PS+ L F E+++ K+
Sbjct: 83 FITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKK 123
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNC 179
+ L C +C++ +V CGH +C C
Sbjct: 8 RRLQEERTCKVCLDRAVSIVFVPCGHLVCAEC 39
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
++L C +C+E + V+ CGH+ C C W
Sbjct: 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRW 45
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 150 LDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSC 190
+D EC +C+ LP CGH C W +C
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTC 46
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 155 ECGICMENCT----KMVLPNCGHSLCVNCFHDWNARS 187
EC ICME+ T + L +CGH++C C A S
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,547,577
Number of Sequences: 62578
Number of extensions: 205176
Number of successful extensions: 602
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 33
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)