BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029109
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 154 DECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
DEC ICM+ ++LP C HS C C W+ R +SC
Sbjct: 153 DECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSC 188
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 86 DGMPALSSKERKATLREFYAIIYPSLRQLESEFSE--LEDNSKRDQCSEISSRKRVEERR 143
DGM S R L +F + Q FS + S D C RV
Sbjct: 86 DGMVEAS---RIMNLYQFIQLYKDITSQAAEVFSSNVAAEGSSEDTCQASMWMGRV---- 138
Query: 144 KLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ +S++C
Sbjct: 139 ----KQLTDEEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNC 180
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 147 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 188
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
K L +EC ICM+ ++LP C HS C C W+ R ++C
Sbjct: 148 KQLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNC 189
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
LD +C IC E+ + V NC HS C C W R + C
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEEC 416
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 134 SSRKRVEERRKLSDKDLDRNDE-CGICMEN------CTKM-----VLPNCGHSLCVNCFH 181
+++K E+ +S++ LD D C ICM++ TKM +LP CGH L C
Sbjct: 297 NNKKLYEKLSDVSEEQLDDTDSMCIICMDDMLPTTETTKMNRRAKMLP-CGHMLHFGCLK 355
Query: 182 DWNARSQSC 190
W RSQ+C
Sbjct: 356 SWMERSQTC 364
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
LD +C IC E+ + V NC HS C C W R + C
Sbjct: 371 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWRKRKEEC 411
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 146 SDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
SD D N +C IC+++ + V+ CGH C C H W
Sbjct: 38 SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKW 75
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 37.4 bits (85), Expect = 0.071, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 95 ERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQ---CSEISSRKRVEERRKLSDKD-- 149
++K L + +Y ++L +LE + Q +EI + K + + + D
Sbjct: 977 QKKIELTDILKNVYDCNKKLIGHCQDLEKENSTLQNKLSNEIKNSKMLSKNLSKNSDDHL 1036
Query: 150 -LDRNDE------CGICMENCTKMVLPNCGHSLCVNC-FHDWNARSQSC 190
++ N+E C +CMEN ++ CGH C NC F++ R++ C
Sbjct: 1037 LIEENNELRRRLICSVCMENFRNYIIIKCGHIYCNNCIFNNLKTRNRKC 1085
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 122 EDNSKRDQ--CSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNC 179
NS DQ S I+ + +E++ KL + N +C +CME CGH C +C
Sbjct: 221 HSNSYFDQHTISSITDERDLEDKNKLPFIP-EGNRKCSLCMEFIHCPAATECGHIFCWSC 279
Query: 180 FHDWNARSQSC 190
+ W ++ C
Sbjct: 280 INGWTSKKSEC 290
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
+C IC E + V NC HS C +C +W R C
Sbjct: 391 QCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKC 426
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
EC IC E + +CGH+ C C +W S+SC
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSC 119
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 416
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 135 SRKRVEERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
++ EE S+KD EC IC++ V+ CGH C C W
Sbjct: 5 TKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQW 53
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ 188
EC IC E+ TK+ + C H CV+C D N R Q
Sbjct: 781 ECPICAEDVTKLAISKCLHMGCVDCLAD-NVRFQ 813
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 381 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPF 418
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 147 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
+ + D EC IC++ V+ CGH C C H W
Sbjct: 32 NTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQW 68
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDW 183
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDW 183
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 34 DSTFECNICLDTAKDAVISLCGHLFCWPCLHQW 66
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDW 183
EC IC+E + V+ CGH C C H W
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQW 54
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICM 160
++F AII ++LE E E ++ ++K EE + L+ +C IC
Sbjct: 360 KDFEAIIQAKNKELEQTKEEKE---------KVQAQK--EEVLSHMNDVLENELQCIICS 408
Query: 161 ENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
E + V NC HS C C ++W R C
Sbjct: 409 EYFIEAVTLNCAHSFCSYCINEWMKRKIEC 438
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 101 REFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKD--LDRNDECGI 158
++F AII ++LE Q E + + ++ LS + L+ +C I
Sbjct: 359 KDFEAIIQAKNKELE-------------QTKEEKEKMQAQKEEVLSHMNDVLENELQCII 405
Query: 159 CMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
C E + V NC HS C C ++W R C
Sbjct: 406 CSEYFIEAVTLNCAHSFCSYCINEWMKRKIEC 437
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 152 RNDECGICM----ENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
RN++C IC+ E T V+P+CGH V+C W + +C
Sbjct: 136 RNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTC 178
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDW 183
D EC IC++ V+ CGH C C H W
Sbjct: 36 DSTFECNICLDTSKDAVISLCGHLFCWPCLHQW 68
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 110 SLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKMVLP 169
S R L + S LE K D SE ++ VEE RK EC IC+E VL
Sbjct: 755 SKRFLSGKSSGLEREGK-DVPSEAFVQEVVEELRK------GEQGECPICLEALEDAVLT 807
Query: 170 NCGHSLCVNCF 180
C H LC C
Sbjct: 808 PCAHRLCRECL 818
>sp|Q3UWZ0|TRI75_MOUSE Tripartite motif-containing protein 75 OS=Mus musculus GN=Trim75
PE=2 SV=1
Length = 467
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQS 189
L + +C IC+++ T V CGH+ C +C D+ A Q+
Sbjct: 10 LQKETKCPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQA 49
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
L+ +C IC E + V NC HS C C ++W R C
Sbjct: 399 LENELQCIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVEC 439
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 145 LSDKDLDRNDECGICM----ENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
SD+ EC +C+ E+ T VLPNC H+ V+C W +C
Sbjct: 108 FSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTC 157
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 140 EERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
R L ++ + RN C +C+E CGH C C W + C
Sbjct: 257 HRRGSLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAEC 307
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 140 EERRKLSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
R L ++ + RN C +C+E CGH C C W + C
Sbjct: 257 HRRASLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAEC 307
>sp|Q92265|PEX10_PICPA Peroxisome biogenesis factor 10 OS=Komagataella pastoris GN=PEX10
PE=1 SV=1
Length = 419
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 155 ECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCL 191
+C +C+ T NCGH C +C DW Q+ L
Sbjct: 297 QCMLCLSYMTNPTAANCGHCFCWSCIIDWCKERQTVL 333
>sp|Q6GQL0|CBLBA_XENLA E3 ubiquitin-protein ligase CBL-B-A OS=Xenopus laevis GN=cblb-a
PE=2 SV=1
Length = 918
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 384 CKICAENDKDVKIEPCGHLMCTSCLTSWQESDGQGCPF 421
>sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopus tropicalis GN=cblb
PE=2 SV=1
Length = 982
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 384 CKICAENDKDVKIEPCGHLMCTSCLTSWQESDGQGCPF 421
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 199
DLD C IC + VL CGH+ C C ++ + C +A R+
Sbjct: 25 DLDSLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAELRQ 75
>sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus musculus GN=Cblb PE=1 SV=3
Length = 982
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 410
>sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo sapiens GN=CBLB PE=1 SV=2
Length = 982
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 410
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 124 NSKRDQCSEISSRKRVEERRKLSD-KDLDRND-ECGICMENCTKMVLPNCGHSLCVNCFH 181
N + +Q E + + ++ LS DL N+ +C IC E + V NC HS C C +
Sbjct: 372 NKELEQTKEEKDKVQAQKEEVLSHMNDLLENELQCIICSEYFIEAVTLNCAHSFCSFCIN 431
Query: 182 DWNARSQSC 190
+W R C
Sbjct: 432 EWMKRKVEC 440
>sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus norvegicus GN=Cblb PE=2
SV=1
Length = 938
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPF 410
>sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xenopus laevis GN=cblb-b
PE=2 SV=1
Length = 764
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLF 192
C IC EN + + CGH +C +C W + Q C F
Sbjct: 386 CKICAENDKDVKIEPCGHLMCTSCLTSWQESDGQGCPF 423
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 107 IYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRND-ECGICM----E 161
+Y ++R E ED+ K D + SS SD +L + EC IC+ +
Sbjct: 57 LYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAECAICLSEFEQ 116
Query: 162 NCTKMVLPNCGHSLCVNCFHDWNARSQSC 190
+ VL C H V C H W + SC
Sbjct: 117 GESIQVLEKCQHGFHVKCIHKWLSTRSSC 145
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 156 CGIC-MENCTKMVLPNCGHSLCVNCF 180
C +C N ++PNCGH+ C NC
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCM 664
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 146 SDKDLDRNDECGICMENCT---KMVLPNCGHSLCVNCFHDWNARSQSC 190
SD D + +D C IC+E T + +C H + C +W+ RS+ C
Sbjct: 36 SDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKEC 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,184,176
Number of Sequences: 539616
Number of extensions: 2739393
Number of successful extensions: 9958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 9792
Number of HSP's gapped (non-prelim): 310
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)