Query 029109
Match_columns 199
No_of_seqs 225 out of 1372
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.7 1.3E-17 2.9E-22 148.3 1.3 173 20-198 3-221 (344)
2 PHA02929 N1R/p28-like protein; 99.3 1.8E-12 3.8E-17 110.6 3.9 47 151-197 172-226 (238)
3 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.3E-12 2.9E-17 85.4 2.5 47 153-199 2-49 (50)
4 PHA02926 zinc finger-like prot 99.3 2E-12 4.4E-17 108.3 3.0 48 151-198 168-230 (242)
5 PLN03208 E3 ubiquitin-protein 99.3 2.6E-12 5.7E-17 106.0 3.3 51 148-198 13-79 (193)
6 PF13639 zf-RING_2: Ring finge 99.2 3.2E-12 6.9E-17 81.4 1.8 41 154-194 1-44 (44)
7 PF13923 zf-C3HC4_2: Zinc fing 99.1 2.5E-11 5.5E-16 75.5 2.6 38 156-193 1-39 (39)
8 PF15227 zf-C3HC4_4: zinc fing 99.1 4.1E-11 8.8E-16 76.1 2.9 38 156-193 1-42 (42)
9 KOG0823 Predicted E3 ubiquitin 99.1 4.6E-11 9.9E-16 100.6 3.0 48 151-198 45-95 (230)
10 PF12678 zf-rbx1: RING-H2 zinc 99.1 6.1E-11 1.3E-15 83.8 3.2 42 153-194 19-73 (73)
11 COG5243 HRD1 HRD ubiquitin lig 99.1 2.8E-10 6E-15 101.6 6.3 46 151-197 285-344 (491)
12 cd00162 RING RING-finger (Real 99.0 1.7E-10 3.6E-15 71.7 3.3 43 155-197 1-45 (45)
13 KOG0317 Predicted E3 ubiquitin 99.0 1.2E-10 2.6E-15 100.8 3.0 48 151-198 237-284 (293)
14 smart00504 Ubox Modified RING 99.0 5.8E-10 1.3E-14 75.4 4.0 46 153-198 1-46 (63)
15 PF00097 zf-C3HC4: Zinc finger 98.9 5.7E-10 1.2E-14 69.6 2.8 38 156-193 1-41 (41)
16 KOG4628 Predicted E3 ubiquitin 98.9 7.7E-10 1.7E-14 98.7 3.0 44 154-198 230-278 (348)
17 KOG0320 Predicted E3 ubiquitin 98.9 7.6E-10 1.7E-14 90.0 2.3 45 154-198 132-178 (187)
18 TIGR00599 rad18 DNA repair pro 98.9 1.3E-09 2.8E-14 99.2 3.7 50 149-198 22-71 (397)
19 PF12861 zf-Apc11: Anaphase-pr 98.9 1.3E-09 2.8E-14 79.0 3.0 48 151-198 19-82 (85)
20 smart00184 RING Ring finger. E 98.8 3.1E-09 6.8E-14 63.6 3.1 38 156-193 1-39 (39)
21 PF14634 zf-RING_5: zinc-RING 98.8 2.7E-09 5.9E-14 68.0 2.9 41 155-195 1-44 (44)
22 COG5540 RING-finger-containing 98.8 3E-09 6.5E-14 92.9 2.5 45 153-198 323-372 (374)
23 KOG4172 Predicted E3 ubiquitin 98.8 1.6E-09 3.6E-14 72.0 0.6 46 153-198 7-54 (62)
24 KOG2164 Predicted E3 ubiquitin 98.7 3.9E-09 8.4E-14 97.5 2.6 45 153-197 186-235 (513)
25 COG5574 PEX10 RING-finger-cont 98.6 2.7E-08 5.8E-13 85.4 2.6 47 151-197 213-261 (271)
26 PF13445 zf-RING_UBOX: RING-ty 98.6 2.6E-08 5.6E-13 63.6 1.7 35 156-191 1-43 (43)
27 KOG0287 Postreplication repair 98.5 2.3E-08 4.9E-13 88.6 1.5 48 152-199 22-69 (442)
28 KOG0802 E3 ubiquitin ligase [P 98.5 2.9E-08 6.3E-13 93.7 1.9 46 151-197 289-340 (543)
29 PF04564 U-box: U-box domain; 98.5 8.5E-08 1.8E-12 67.5 2.6 47 152-198 3-50 (73)
30 COG5432 RAD18 RING-finger-cont 98.4 1.6E-07 3.5E-12 81.8 2.0 45 153-197 25-69 (391)
31 KOG4265 Predicted E3 ubiquitin 98.3 2.4E-07 5.2E-12 82.5 2.6 48 151-199 288-337 (349)
32 KOG1002 Nucleotide excision re 98.2 8.5E-07 1.8E-11 82.7 2.7 100 84-197 481-585 (791)
33 KOG4159 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 79.6 2.7 51 149-199 80-130 (398)
34 PF14835 zf-RING_6: zf-RING of 98.0 1.3E-06 2.8E-11 60.1 0.6 42 153-196 7-49 (65)
35 PF11793 FANCL_C: FANCL C-term 98.0 1.4E-06 3E-11 61.1 -0.1 46 153-198 2-66 (70)
36 KOG0978 E3 ubiquitin ligase in 97.9 3E-06 6.5E-11 81.6 1.1 44 154-197 644-688 (698)
37 KOG1785 Tyrosine kinase negati 97.8 6.8E-06 1.5E-10 74.5 1.4 45 154-198 370-416 (563)
38 KOG1493 Anaphase-promoting com 97.8 4.6E-06 9.9E-11 59.3 -0.3 44 154-197 21-80 (84)
39 COG5219 Uncharacterized conser 97.7 1.6E-05 3.5E-10 78.4 2.2 48 150-198 1466-1523(1525)
40 KOG0311 Predicted E3 ubiquitin 97.7 4.1E-06 8.8E-11 74.7 -2.1 47 151-197 41-89 (381)
41 KOG0297 TNF receptor-associate 97.7 2.2E-05 4.8E-10 71.7 2.5 48 150-197 18-66 (391)
42 KOG0828 Predicted E3 ubiquitin 97.7 1.8E-05 3.8E-10 73.4 1.7 48 151-198 569-634 (636)
43 smart00744 RINGv The RING-vari 97.6 3.6E-05 7.9E-10 50.3 2.3 39 155-194 1-49 (49)
44 PHA03096 p28-like protein; Pro 97.5 3.3E-05 7.2E-10 67.7 1.7 42 154-195 179-231 (284)
45 COG5194 APC11 Component of SCF 97.5 6.2E-05 1.3E-09 54.0 2.6 32 166-197 49-80 (88)
46 KOG4275 Predicted E3 ubiquitin 97.5 1.3E-05 2.9E-10 70.0 -1.0 44 152-199 299-343 (350)
47 KOG4692 Predicted E3 ubiquitin 97.5 7E-05 1.5E-09 67.2 3.3 47 151-197 420-466 (489)
48 KOG0804 Cytoplasmic Zn-finger 97.4 6E-05 1.3E-09 69.2 1.8 41 153-195 175-219 (493)
49 COG5152 Uncharacterized conser 97.4 8.2E-05 1.8E-09 62.0 1.7 44 152-195 195-238 (259)
50 KOG2879 Predicted E3 ubiquitin 97.1 0.00078 1.7E-08 58.6 5.3 50 148-197 234-286 (298)
51 KOG1001 Helicase-like transcri 97.1 0.00028 6E-09 68.6 2.0 44 154-198 455-500 (674)
52 KOG1734 Predicted RING-contain 97.0 0.00019 4.1E-09 62.3 0.7 46 151-197 222-280 (328)
53 KOG2660 Locus-specific chromos 97.0 0.00017 3.7E-09 63.9 -0.1 48 150-197 12-60 (331)
54 KOG1813 Predicted E3 ubiquitin 96.9 0.00034 7.4E-09 61.3 1.2 45 153-197 241-285 (313)
55 KOG2930 SCF ubiquitin ligase, 96.9 0.00047 1E-08 51.7 1.7 29 167-195 77-105 (114)
56 KOG0825 PHD Zn-finger protein 96.9 0.00028 6.1E-09 68.7 0.5 46 152-198 122-171 (1134)
57 PF11789 zf-Nse: Zinc-finger o 96.7 0.00087 1.9E-08 45.2 1.9 41 152-192 10-53 (57)
58 PF14570 zf-RING_4: RING/Ubox 96.6 0.0019 4.1E-08 42.1 2.4 43 156-198 1-48 (48)
59 KOG1571 Predicted E3 ubiquitin 96.5 0.0014 3E-08 58.9 1.7 45 151-198 303-347 (355)
60 COG5236 Uncharacterized conser 96.3 0.0032 7E-08 56.6 3.0 49 148-196 56-106 (493)
61 PF14447 Prok-RING_4: Prokaryo 96.2 0.0027 5.8E-08 42.5 1.6 44 152-198 6-50 (55)
62 KOG3002 Zn finger protein [Gen 96.1 0.0031 6.8E-08 55.8 2.1 43 152-198 47-91 (299)
63 PF10367 Vps39_2: Vacuolar sor 95.7 0.023 4.9E-07 41.6 4.9 35 146-181 71-108 (109)
64 KOG1941 Acetylcholine receptor 95.7 0.0031 6.7E-08 57.5 0.3 45 149-194 361-412 (518)
65 PHA02825 LAP/PHD finger-like p 95.5 0.016 3.4E-07 46.8 3.6 47 151-197 6-58 (162)
66 KOG2114 Vacuolar assembly/sort 95.1 0.023 5E-07 56.1 4.0 40 154-196 841-881 (933)
67 PF05290 Baculo_IE-1: Baculovi 94.8 0.069 1.5E-06 42.0 5.3 46 152-198 79-132 (140)
68 KOG1428 Inhibitor of type V ad 94.7 0.021 4.5E-07 59.5 2.6 49 150-198 3483-3544(3738)
69 PF04641 Rtf2: Rtf2 RING-finge 94.5 0.041 8.9E-07 47.5 3.8 48 150-198 110-161 (260)
70 KOG0826 Predicted E3 ubiquitin 94.5 0.028 6.1E-07 50.1 2.8 43 151-193 298-341 (357)
71 KOG3039 Uncharacterized conser 94.5 0.033 7.2E-07 48.1 3.1 47 152-198 220-270 (303)
72 KOG1814 Predicted E3 ubiquitin 94.1 0.025 5.4E-07 51.9 1.7 42 153-194 184-236 (445)
73 KOG1100 Predicted E3 ubiquitin 94.1 0.027 5.9E-07 47.3 1.7 40 155-198 160-200 (207)
74 KOG3268 Predicted E3 ubiquitin 93.8 0.04 8.8E-07 45.5 2.2 44 154-197 166-227 (234)
75 KOG4445 Uncharacterized conser 93.3 0.02 4.3E-07 50.7 -0.4 45 154-198 116-186 (368)
76 KOG2034 Vacuolar sorting prote 92.8 0.2 4.4E-06 49.9 5.6 34 150-184 814-850 (911)
77 PF10272 Tmpp129: Putative tra 92.8 0.15 3.3E-06 46.3 4.4 24 174-197 314-350 (358)
78 KOG1940 Zn-finger protein [Gen 92.6 0.07 1.5E-06 46.8 1.9 42 153-195 158-204 (276)
79 PF05883 Baculo_RING: Baculovi 92.5 0.057 1.2E-06 42.4 1.1 32 153-185 26-67 (134)
80 COG5222 Uncharacterized conser 92.3 0.072 1.6E-06 47.3 1.7 42 154-195 275-318 (427)
81 COG5175 MOT2 Transcriptional r 91.5 0.12 2.7E-06 46.5 2.2 45 153-197 14-63 (480)
82 KOG4362 Transcriptional regula 91.2 0.051 1.1E-06 52.8 -0.6 47 152-198 20-69 (684)
83 PF03854 zf-P11: P-11 zinc fin 90.9 0.088 1.9E-06 34.3 0.5 30 169-198 16-46 (50)
84 KOG2932 E3 ubiquitin ligase in 90.7 0.076 1.7E-06 47.3 0.1 43 153-199 90-135 (389)
85 PF12906 RINGv: RING-variant d 90.5 0.18 4E-06 32.4 1.8 37 156-193 1-47 (47)
86 KOG1952 Transcription factor N 90.3 0.15 3.3E-06 50.6 1.7 47 151-197 189-246 (950)
87 KOG0298 DEAD box-containing he 89.3 0.24 5.3E-06 51.2 2.4 42 153-195 1153-1196(1394)
88 PF08746 zf-RING-like: RING-li 88.8 0.46 9.9E-06 30.0 2.6 38 156-193 1-43 (43)
89 KOG1815 Predicted E3 ubiquitin 87.9 0.34 7.3E-06 45.0 2.2 36 151-186 68-104 (444)
90 KOG1812 Predicted E3 ubiquitin 87.2 0.95 2.1E-05 41.4 4.7 34 152-185 145-182 (384)
91 KOG2817 Predicted E3 ubiquitin 86.4 0.61 1.3E-05 42.7 2.9 40 155-195 336-382 (394)
92 KOG0309 Conserved WD40 repeat- 85.6 0.5 1.1E-05 46.7 2.0 24 169-192 1046-1069(1081)
93 KOG3970 Predicted E3 ubiquitin 84.3 0.87 1.9E-05 39.1 2.7 45 152-197 49-104 (299)
94 PF14569 zf-UDP: Zinc-binding 82.8 1.3 2.8E-05 31.8 2.6 47 153-199 9-63 (80)
95 PHA02862 5L protein; Provision 81.6 0.9 1.9E-05 36.3 1.6 23 175-197 28-52 (156)
96 KOG3053 Uncharacterized conser 80.2 0.84 1.8E-05 39.8 1.1 46 150-196 17-80 (293)
97 KOG3899 Uncharacterized conser 75.9 1.5 3.3E-05 38.9 1.5 26 172-197 326-364 (381)
98 PF07975 C1_4: TFIIH C1-like d 75.5 1.9 4.1E-05 28.4 1.5 27 168-194 24-50 (51)
99 KOG1829 Uncharacterized conser 75.2 1.2 2.6E-05 42.9 0.7 20 171-193 537-556 (580)
100 KOG0825 PHD Zn-finger protein 73.3 1.6 3.6E-05 43.4 1.2 30 168-197 118-153 (1134)
101 KOG3842 Adaptor protein Pellin 73.1 3.1 6.8E-05 37.4 2.8 47 151-197 339-413 (429)
102 PLN02189 cellulose synthase 72.8 2.8 6.2E-05 42.9 2.7 47 153-199 34-88 (1040)
103 PF07191 zinc-ribbons_6: zinc- 72.4 0.31 6.7E-06 34.2 -2.9 41 153-198 1-41 (70)
104 KOG1812 Predicted E3 ubiquitin 71.8 1.9 4E-05 39.6 1.1 40 153-193 306-351 (384)
105 PF02891 zf-MIZ: MIZ/SP-RING z 69.9 5.5 0.00012 25.8 2.8 42 154-196 3-50 (50)
106 PLN02638 cellulose synthase A 67.3 4.2 9.2E-05 41.8 2.6 47 153-199 17-71 (1079)
107 KOG2068 MOT2 transcription fac 67.3 4.3 9.3E-05 36.5 2.4 45 154-198 250-298 (327)
108 KOG3579 Predicted E3 ubiquitin 67.1 2.5 5.4E-05 37.5 0.8 33 154-186 269-305 (352)
109 PF04710 Pellino: Pellino; In 65.6 2 4.4E-05 39.5 0.0 46 153-198 328-401 (416)
110 smart00647 IBR In Between Ring 65.5 1.3 2.8E-05 29.1 -1.0 18 168-185 43-60 (64)
111 KOG0269 WD40 repeat-containing 64.5 5.3 0.00012 39.6 2.6 38 155-192 781-820 (839)
112 PLN02436 cellulose synthase A 64.2 5 0.00011 41.4 2.4 47 153-199 36-90 (1094)
113 KOG4185 Predicted E3 ubiquitin 61.7 1.2 2.5E-05 38.7 -2.2 43 153-195 207-264 (296)
114 KOG1815 Predicted E3 ubiquitin 61.7 3.7 8E-05 38.1 1.0 22 163-184 176-197 (444)
115 KOG3039 Uncharacterized conser 61.6 7.9 0.00017 33.7 2.9 40 145-184 35-74 (303)
116 PLN02400 cellulose synthase 60.2 5.6 0.00012 41.0 2.0 47 153-199 36-90 (1085)
117 PF09723 Zn-ribbon_8: Zinc rib 59.2 2.3 5.1E-05 26.5 -0.6 29 169-199 9-39 (42)
118 TIGR00622 ssl1 transcription f 59.0 11 0.00024 28.8 3.0 28 168-195 84-111 (112)
119 KOG4718 Non-SMC (structural ma 58.5 5.6 0.00012 33.8 1.4 41 154-194 182-223 (235)
120 PLN02915 cellulose synthase A 56.4 8.3 0.00018 39.7 2.5 48 152-199 14-69 (1044)
121 COG5220 TFB3 Cdk activating ki 54.8 2.2 4.7E-05 37.0 -1.6 29 166-194 29-60 (314)
122 KOG3799 Rab3 effector RIM1 and 51.2 28 0.00061 27.7 4.2 22 148-173 60-82 (169)
123 KOG0824 Predicted E3 ubiquitin 50.4 5.4 0.00012 35.6 0.1 48 151-198 103-151 (324)
124 PF06906 DUF1272: Protein of u 49.9 15 0.00032 24.7 2.1 26 171-198 25-52 (57)
125 PF04216 FdhE: Protein involve 48.5 3.5 7.5E-05 36.0 -1.4 44 152-195 171-219 (290)
126 PF06844 DUF1244: Protein of u 48.1 9.8 0.00021 26.4 1.0 12 174-185 11-22 (68)
127 KOG0827 Predicted E3 ubiquitin 46.6 4.9 0.00011 37.1 -0.8 46 153-198 196-245 (465)
128 PRK03564 formate dehydrogenase 46.2 7.5 0.00016 34.7 0.3 44 152-195 186-234 (309)
129 KOG1609 Protein involved in mR 46.1 10 0.00022 32.7 1.1 44 153-197 78-133 (323)
130 KOG2113 Predicted RNA binding 44.5 17 0.00037 32.7 2.3 41 153-195 343-384 (394)
131 PF05605 zf-Di19: Drought indu 42.8 12 0.00027 24.2 0.9 38 153-197 2-41 (54)
132 PF01485 IBR: IBR domain; Int 42.1 3.6 7.9E-05 26.8 -1.8 16 169-184 44-59 (64)
133 PF13240 zinc_ribbon_2: zinc-r 40.9 5.4 0.00012 21.7 -0.9 12 185-196 11-22 (23)
134 PF10146 zf-C4H2: Zinc finger- 40.2 18 0.00039 30.9 1.7 22 175-196 196-217 (230)
135 KOG0006 E3 ubiquitin-protein l 39.9 18 0.00039 32.8 1.7 30 170-199 341-409 (446)
136 COG3813 Uncharacterized protei 39.4 20 0.00044 25.4 1.6 24 172-197 28-51 (84)
137 PF02318 FYVE_2: FYVE-type zin 39.2 60 0.0013 24.4 4.3 31 151-181 52-87 (118)
138 COG4647 AcxC Acetone carboxyla 39.1 14 0.00031 29.1 0.9 28 156-184 60-87 (165)
139 TIGR01562 FdhE formate dehydro 39.0 10 0.00022 33.8 0.0 44 153-196 184-233 (305)
140 KOG0801 Predicted E3 ubiquitin 38.7 10 0.00022 31.1 -0.0 25 151-176 175-203 (205)
141 PF10497 zf-4CXXC_R1: Zinc-fin 38.0 37 0.0008 25.4 2.9 27 169-195 31-69 (105)
142 KOG0241 Kinesin-like protein [ 37.8 30 0.00066 35.8 3.0 19 10-28 653-671 (1714)
143 COG5109 Uncharacterized conser 36.7 26 0.00057 31.7 2.2 41 155-195 338-384 (396)
144 PF10571 UPF0547: Uncharacteri 36.1 11 0.00025 21.2 -0.1 7 169-175 18-24 (26)
145 PF11809 DUF3330: Domain of un 36.0 12 0.00026 26.1 0.0 34 154-187 12-51 (70)
146 KOG0802 E3 ubiquitin ligase [P 34.9 18 0.00038 34.5 0.9 44 151-198 477-520 (543)
147 KOG3113 Uncharacterized conser 34.5 34 0.00074 30.0 2.5 45 152-198 110-158 (293)
148 PF04423 Rad50_zn_hook: Rad50 34.0 14 0.00031 23.9 0.1 9 189-197 22-30 (54)
149 KOG2113 Predicted RNA binding 33.3 13 0.00029 33.4 -0.1 45 151-195 134-180 (394)
150 PF06937 EURL: EURL protein; 33.1 43 0.00092 29.5 2.9 17 175-191 57-74 (285)
151 PF14311 DUF4379: Domain of un 32.8 31 0.00068 22.3 1.6 9 185-193 47-55 (55)
152 KOG2066 Vacuolar assembly/sort 32.3 17 0.00036 36.5 0.3 41 151-193 782-830 (846)
153 KOG4451 Uncharacterized conser 31.5 28 0.00061 30.1 1.5 22 175-196 251-272 (286)
154 KOG3161 Predicted E3 ubiquitin 30.0 32 0.00069 34.0 1.7 20 166-185 28-47 (861)
155 PF02370 M: M protein repeat; 28.2 65 0.0014 17.3 2.0 13 15-27 3-15 (21)
156 PF14169 YdjO: Cold-inducible 28.1 32 0.00069 23.3 1.0 12 187-198 39-50 (59)
157 PF11023 DUF2614: Protein of u 27.7 20 0.00042 27.5 -0.1 24 169-198 73-96 (114)
158 COG3492 Uncharacterized protei 27.2 28 0.00061 25.8 0.7 12 174-185 42-53 (104)
159 PF13901 DUF4206: Domain of un 26.8 45 0.00097 27.7 1.9 37 153-194 152-196 (202)
160 KOG1356 Putative transcription 26.5 19 0.00042 36.2 -0.3 43 153-195 229-279 (889)
161 PLN02248 cellulose synthase-li 26.1 45 0.00098 34.8 2.2 29 170-198 149-177 (1135)
162 PF14319 Zn_Tnp_IS91: Transpos 26.0 34 0.00074 25.7 1.0 33 152-186 41-77 (111)
163 PF01363 FYVE: FYVE zinc finge 25.9 26 0.00057 23.4 0.3 32 152-183 8-43 (69)
164 KOG2789 Putative Zn-finger pro 25.4 33 0.00071 31.9 0.9 32 152-184 73-107 (482)
165 PF07800 DUF1644: Protein of u 24.6 32 0.00068 28.0 0.6 11 188-198 81-91 (162)
166 TIGR02605 CxxC_CxxC_SSSS putat 23.5 34 0.00074 21.6 0.5 11 188-198 27-38 (52)
167 cd00350 rubredoxin_like Rubred 22.9 54 0.0012 19.1 1.3 10 187-196 17-26 (33)
168 COG1545 Predicted nucleic-acid 22.7 43 0.00094 26.2 1.1 20 169-196 33-52 (140)
169 smart00132 LIM Zinc-binding do 22.5 71 0.0015 18.0 1.8 35 156-198 2-38 (39)
170 smart00064 FYVE Protein presen 20.7 87 0.0019 20.7 2.1 32 153-184 10-45 (68)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-17 Score=148.32 Aligned_cols=173 Identities=23% Similarity=0.356 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhCCCCCCCceEEEEeccCCc-chHHHHHHhhhcccCCCCcccccceeEEEEEEEe-ecCCCccchhhh-
Q 029109 20 ADIQHANTLAAALPRDYGGDFVQMRLSYSPF-APLVLFMIEWMDYSCTDTVPSYLGLLNILVYKVY-VDGMPALSSKER- 96 (199)
Q Consensus 20 ~di~~~n~~~~~~~~~~~g~~~~~~l~y~~~-~~~~lf~v~~~~~~~~~~l~~~l~l~~il~yk~~-~dg~~~~s~~~r- 96 (199)
.+++++ |.+..+|+++.+.--+||++++.- .....+++.|+++. .+. .++.+++++..+ .|+..+++...+
T Consensus 3 ~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~----~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~ 76 (344)
T KOG1039|consen 3 LSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSA----AAS-TGLSQSLIWANAVADASATMSVSSRP 76 (344)
T ss_pred cccccc-hhhhhcccccccccceeeeeccCchhhcccccccccccc----ccc-cccchhhcccchhhccccccchhccc
Confidence 467888 999999999999999999999998 88899999999877 333 577888888888 688888887777
Q ss_pred -hhhHHHHHHHHhhHHHHH---------HHhhhhhhhh----------hhccchhhhhhhhHHHHhhhccccCC------
Q 029109 97 -KATLREFYAIIYPSLRQL---------ESEFSELEDN----------SKRDQCSEISSRKRVEERRKLSDKDL------ 150 (199)
Q Consensus 97 -~atl~efy~~I~psl~qL---------~~~~~~~e~~----------~~~~~~~~~~~k~~~~~~~~ls~~~~------ 150 (199)
....++++++.+|+-.++ +.+...+... .+...+...++.............+.
T Consensus 77 ~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~ 156 (344)
T KOG1039|consen 77 VLTAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFAL 156 (344)
T ss_pred chhhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCc
Confidence 678888998877772221 1111111111 01111111111111111001111222
Q ss_pred --CCCCccccccccCcCce--------ecCCCCcccHhhHHHHh--hc-----CCCCcCcccCcc
Q 029109 151 --DRNDECGICMENCTKMV--------LPNCGHSLCVNCFHDWN--AR-----SQSCLFAVAAYR 198 (199)
Q Consensus 151 --e~e~eC~IClE~~~~~v--------lp~CgH~FC~~Ci~~W~--~~-----s~~CP~CR~~lk 198 (199)
..+.+|+||||.....+ +|||.|.||.+||+.|. .+ +++||+||.+.+
T Consensus 157 ~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 157 QKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred CccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34889999998766544 59999999999999998 44 589999998865
No 2
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.29 E-value=1.8e-12 Score=110.56 Aligned_cols=47 Identities=30% Similarity=0.898 Sum_probs=40.2
Q ss_pred CCCCccccccccCcC--------ceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 151 DRNDECGICMENCTK--------MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~~--------~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
..+.+|+||+|...+ .++++|+|.||..||.+|+..+.+||+||.++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 456899999986432 36778999999999999999999999999876
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.29 E-value=1.3e-12 Score=85.42 Aligned_cols=47 Identities=32% Similarity=0.714 Sum_probs=40.6
Q ss_pred CCccccccccCcCceecCCCCc-ccHhhHHHHhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
+.+|.||++...++++.+|||. ||..|+.+|......||+||+++++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5689999998888777779999 9999999999999999999999864
No 4
>PHA02926 zinc finger-like protein; Provisional
Probab=99.27 E-value=2e-12 Score=108.35 Aligned_cols=48 Identities=29% Similarity=0.820 Sum_probs=39.2
Q ss_pred CCCCccccccccCc---------CceecCCCCcccHhhHHHHhhcC------CCCcCcccCcc
Q 029109 151 DRNDECGICMENCT---------KMVLPNCGHSLCVNCFHDWNARS------QSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~---------~~vlp~CgH~FC~~Ci~~W~~~s------~~CP~CR~~lk 198 (199)
.+|.+|+||||... ..+|++|+|.||..||.+|.... .+||+||..++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45789999998642 25788999999999999999742 46999998764
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.26 E-value=2.6e-12 Score=106.00 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=43.6
Q ss_pred cCCCCCCccccccccCcCceecCCCCcccHhhHHHHhhc----------------CCCCcCcccCcc
Q 029109 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----------------SQSCLFAVAAYR 198 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~----------------s~~CP~CR~~lk 198 (199)
.+..++.+|+||++...++++++|||.||..||.+|+.. ...||.||.++.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 455678899999999999888889999999999999742 248999999874
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.23 E-value=3.2e-12 Score=81.41 Aligned_cols=41 Identities=39% Similarity=0.882 Sum_probs=32.6
Q ss_pred CccccccccC---cCceecCCCCcccHhhHHHHhhcCCCCcCcc
Q 029109 154 DECGICMENC---TKMVLPNCGHSLCVNCFHDWNARSQSCLFAV 194 (199)
Q Consensus 154 ~eC~IClE~~---~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR 194 (199)
++|+||++.. ..++..+|||.||.+|+.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 3799999654 2344444999999999999999999999997
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.14 E-value=2.5e-11 Score=75.47 Aligned_cols=38 Identities=29% Similarity=0.871 Sum_probs=32.7
Q ss_pred cccccccCcCc-eecCCCCcccHhhHHHHhhcCCCCcCc
Q 029109 156 CGICMENCTKM-VLPNCGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 156 C~IClE~~~~~-vlp~CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
|+||++...++ ++++|||.||.+|+.+|++...+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999887777 577799999999999999988899998
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.12 E-value=4.1e-11 Score=76.09 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=30.1
Q ss_pred cccccccCcCceecCCCCcccHhhHHHHhhcC----CCCcCc
Q 029109 156 CGICMENCTKMVLPNCGHSLCVNCFHDWNARS----QSCLFA 193 (199)
Q Consensus 156 C~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s----~~CP~C 193 (199)
|+||++.+.++|..+|||+||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999988899999999999988653 369988
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.6e-11 Score=100.57 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=42.9
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhc---CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR---SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~---s~~CP~CR~~lk 198 (199)
....+|.||+|...++|++.|||-||+.||.+|+.. ++.||.|++.+.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 456899999999999999999999999999999975 468999998774
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.09 E-value=6.1e-11 Score=83.80 Aligned_cols=42 Identities=29% Similarity=0.786 Sum_probs=33.4
Q ss_pred CCccccccccC-------------cCceecCCCCcccHhhHHHHhhcCCCCcCcc
Q 029109 153 NDECGICMENC-------------TKMVLPNCGHSLCVNCFHDWNARSQSCLFAV 194 (199)
Q Consensus 153 e~eC~IClE~~-------------~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR 194 (199)
++.|+||++.. ...+++.|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999654 1245566999999999999999999999998
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.8e-10 Score=101.63 Aligned_cols=46 Identities=33% Similarity=0.840 Sum_probs=38.5
Q ss_pred CCCCcccccccc-Cc-------------CceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 151 DRNDECGICMEN-CT-------------KMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~-~~-------------~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
..|..|.||||. .. +..|| |||.+|.+|+..|.+++++||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 457899999953 21 14567 999999999999999999999999984
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.04 E-value=1.7e-10 Score=71.72 Aligned_cols=43 Identities=33% Similarity=0.870 Sum_probs=36.0
Q ss_pred ccccccccC-cCceecCCCCcccHhhHHHHhhc-CCCCcCcccCc
Q 029109 155 ECGICMENC-TKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAY 197 (199)
Q Consensus 155 eC~IClE~~-~~~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~l 197 (199)
+|+||++.. ...++++|||.||..|+..|... +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999876 44555669999999999999987 77899999764
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-10 Score=100.80 Aligned_cols=48 Identities=23% Similarity=0.777 Sum_probs=42.7
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+....|.+|||....+..++|||.||..||..|......||.||.++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 445799999999888777779999999999999998889999998864
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.97 E-value=5.8e-10 Score=75.42 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+..|+||.+...+++..+|||+||.+||.+|+.....||+|+.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 3579999998888888789999999999999988889999998874
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.94 E-value=5.7e-10 Score=69.63 Aligned_cols=38 Identities=39% Similarity=0.961 Sum_probs=33.5
Q ss_pred cccccccCcCce-ecCCCCcccHhhHHHHhh--cCCCCcCc
Q 029109 156 CGICMENCTKMV-LPNCGHSLCVNCFHDWNA--RSQSCLFA 193 (199)
Q Consensus 156 C~IClE~~~~~v-lp~CgH~FC~~Ci~~W~~--~s~~CP~C 193 (199)
|+||++....++ +.+|||.||..|+.+|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899998888777 777999999999999998 45689998
No 16
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=7.7e-10 Score=98.67 Aligned_cols=44 Identities=36% Similarity=0.902 Sum_probs=37.4
Q ss_pred CccccccccCcC----ceecCCCCcccHhhHHHHhhcCC-CCcCcccCcc
Q 029109 154 DECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQ-SCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~-~CP~CR~~lk 198 (199)
..|.||+|...+ ++|| |+|.||..||+.|+...+ .||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 399999976554 7788 999999999999998864 5999998765
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=7.6e-10 Score=89.97 Aligned_cols=45 Identities=24% Similarity=0.639 Sum_probs=39.0
Q ss_pred CccccccccCcC--ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 154 DECGICMENCTK--MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~~--~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..|||||+...+ ++.++|||.||..||.+.++....||.||..|.
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 589999976655 455889999999999999999999999997664
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.3e-09 Score=99.16 Aligned_cols=50 Identities=26% Similarity=0.550 Sum_probs=44.3
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++.+..|+||++.+..+++++|||.||..||..|+.....||.||.++.
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 45677899999999888888889999999999999988889999998764
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.87 E-value=1.3e-09 Score=78.99 Aligned_cols=48 Identities=23% Similarity=0.683 Sum_probs=37.0
Q ss_pred CCCCccccccccCc-------------CceecCCCCcccHhhHHHHhhc---CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCT-------------KMVLPNCGHSLCVNCFHDWNAR---SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~-------------~~vlp~CgH~FC~~Ci~~W~~~---s~~CP~CR~~lk 198 (199)
.+|+.|+||...+. +.+.-.|+|.||..||.+|+.. +..||+||++.+
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 44778999873322 2456679999999999999975 368999999764
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.82 E-value=3.1e-09 Score=63.64 Aligned_cols=38 Identities=32% Similarity=0.934 Sum_probs=32.8
Q ss_pred cccccccCcCceecCCCCcccHhhHHHHhh-cCCCCcCc
Q 029109 156 CGICMENCTKMVLPNCGHSLCVNCFHDWNA-RSQSCLFA 193 (199)
Q Consensus 156 C~IClE~~~~~vlp~CgH~FC~~Ci~~W~~-~s~~CP~C 193 (199)
|+||++....++..+|||.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789998877766667999999999999998 56689987
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.82 E-value=2.7e-09 Score=68.04 Aligned_cols=41 Identities=29% Similarity=0.797 Sum_probs=34.4
Q ss_pred ccccccccC---cCceecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 155 ECGICMENC---TKMVLPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 155 eC~IClE~~---~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
+|+||.+.. ..+++++|||.||.+|+..+......||+||.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 599999665 34677779999999999999866789999984
No 22
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3e-09 Score=92.91 Aligned_cols=45 Identities=40% Similarity=0.791 Sum_probs=38.5
Q ss_pred CCccccccccCcC----ceecCCCCcccHhhHHHHhh-cCCCCcCcccCcc
Q 029109 153 NDECGICMENCTK----MVLPNCGHSLCVNCFHDWNA-RSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~-~s~~CP~CR~~lk 198 (199)
..+|.|||+.+.+ +++| |.|.||..|+++|.. -+..||.||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3699999987655 6677 999999999999987 5779999999874
No 23
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-09 Score=72.05 Aligned_cols=46 Identities=35% Similarity=0.637 Sum_probs=39.2
Q ss_pred CCccccccccCcCceecCCCC-cccHhhHH-HHhhcCCCCcCcccCcc
Q 029109 153 NDECGICMENCTKMVLPNCGH-SLCVNCFH-DWNARSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH-~FC~~Ci~-~W~~~s~~CP~CR~~lk 198 (199)
+.||.||+|...+.|+-.||| -+|..|-. .|...+..||+||++|+
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 379999999999888877999 49999966 46557889999999985
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.9e-09 Score=97.46 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=39.3
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhc-----CCCCcCcccCc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-----SQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~-----s~~CP~CR~~l 197 (199)
+..||||++...-+++++|||.||..||-+++.. ...||+||..|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 6799999999999999999999999999986543 36899999876
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.7e-08 Score=85.39 Aligned_cols=47 Identities=23% Similarity=0.585 Sum_probs=40.4
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHH-HhhcCC-CCcCcccCc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHD-WNARSQ-SCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~-W~~~s~-~CP~CR~~l 197 (199)
+.+..|.||+|....++-++|||.||..||-. |-.+.. .||.||+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 67889999998888877777999999999998 876654 599999864
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.57 E-value=2.6e-08 Score=63.57 Aligned_cols=35 Identities=46% Similarity=1.042 Sum_probs=20.7
Q ss_pred cccccccCc----CceecCCCCcccHhhHHHHhhcC----CCCc
Q 029109 156 CGICMENCT----KMVLPNCGHSLCVNCFHDWNARS----QSCL 191 (199)
Q Consensus 156 C~IClE~~~----~~vlp~CgH~FC~~Ci~~W~~~s----~~CP 191 (199)
|+||.|... +++|+ |||+||.+|+.++...+ ..||
T Consensus 1 CpIc~e~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899998433 46667 99999999999998754 2676
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.55 E-value=2.3e-08 Score=88.60 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=42.9
Q ss_pred CCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCccC
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
.-..|.||.|.+..+++++|+|.||.-||+.++..+..||.|+.++.+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 345899999999888887799999999999999999999999988753
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.9e-08 Score=93.73 Aligned_cols=46 Identities=30% Similarity=0.692 Sum_probs=38.7
Q ss_pred CCCCccccccccCc------CceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 151 DRNDECGICMENCT------KMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~------~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
..+..|+||+|... +..+| |+|.||..|+..|++++.+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhh
Confidence 34679999996433 46677 999999999999999999999999843
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.48 E-value=8.5e-08 Score=67.54 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=37.9
Q ss_pred CCCccccccccCcCceecCCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
++..|+|+.+...++|..++||+|+..||.+|+.. ...||+|+.++.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 46799999999999888779999999999999998 789999998774
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.36 E-value=1.6e-07 Score=81.85 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=41.8
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
-..|-||-+....++.++|||.||.-||+..+..+.-||.||.+.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccH
Confidence 358999999999999999999999999999999999999999875
No 31
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.4e-07 Score=82.47 Aligned_cols=48 Identities=29% Similarity=0.729 Sum_probs=38.7
Q ss_pred CCCCccccccc-cCcCceecCCCC-cccHhhHHHHhhcCCCCcCcccCccC
Q 029109 151 DRNDECGICME-NCTKMVLPNCGH-SLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 151 e~e~eC~IClE-~~~~~vlp~CgH-~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
+...||.|||. .....||| |.| -+|..|-+...-.+..||+||+++.+
T Consensus 288 ~~gkeCVIClse~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 34579999994 45556667 999 59999999887667899999999863
No 32
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.18 E-value=8.5e-07 Score=82.66 Aligned_cols=100 Identities=16% Similarity=0.396 Sum_probs=71.3
Q ss_pred eecCCCccchhhhhhhHHHHHHHHhhHHHHHHHhhhhhhhhhhccchhhhhhhhHHHHhhhccccCCCCCCccccccccC
Q 029109 84 YVDGMPALSSKERKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENC 163 (199)
Q Consensus 84 ~~dg~~~~s~~~r~atl~efy~~I~psl~qL~~~~~~~e~~~~~~~~~~~~~k~~~~~~~~ls~~~~e~e~eC~IClE~~ 163 (199)
|.|++....++--.+++-..|+.||..+.++++..++-+ +..+++.. .+ ..+-..+.+|++|-|..
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~--------LVl~S~~~-----n~-~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPD--------LVLYSANA-----NL-PDENKGEVECGLCHDPA 546 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcc--------eeeehhhc-----CC-CccccCceeecccCChh
Confidence 346777777777788899999999999998886655321 11221110 11 12224567999999999
Q ss_pred cCceecCCCCcccHhhHHHHhhc-----CCCCcCcccCc
Q 029109 164 TKMVLPNCGHSLCVNCFHDWNAR-----SQSCLFAVAAY 197 (199)
Q Consensus 164 ~~~vlp~CgH~FC~~Ci~~W~~~-----s~~CP~CR~~l 197 (199)
.+++...|.|.||.-|+.++... ..+||.|--++
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 99999999999999999887642 46999996554
No 33
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-06 Score=79.61 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=44.6
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCccC
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
.+..+.+|.||+....++|.++|||+||..|+++-+.....||.||.++.+
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 346788999999998888888899999999999988878899999998763
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.03 E-value=1.3e-06 Score=60.12 Aligned_cols=42 Identities=26% Similarity=0.618 Sum_probs=23.2
Q ss_pred CCccccccccCcCce-ecCCCCcccHhhHHHHhhcCCCCcCcccC
Q 029109 153 NDECGICMENCTKMV-LPNCGHSLCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 153 e~eC~IClE~~~~~v-lp~CgH~FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
-..|++|.+....+| +.+|.|.||..||.+-.. ..||.|+.|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~P 49 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTP 49 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCCh
Confidence 358999999887775 689999999999977544 459999876
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.97 E-value=1.4e-06 Score=61.06 Aligned_cols=46 Identities=28% Similarity=0.735 Sum_probs=22.8
Q ss_pred CCccccccccCc-C-----cee--cCCCCcccHhhHHHHhhc---C--------CCCcCcccCcc
Q 029109 153 NDECGICMENCT-K-----MVL--PNCGHSLCVNCFHDWNAR---S--------QSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~-~-----~vl--p~CgH~FC~~Ci~~W~~~---s--------~~CP~CR~~lk 198 (199)
+.+|+||++... . .+= +.|++.||..|+.+|+.. + ..||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999995432 1 222 379999999999999853 1 35999998874
No 36
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3e-06 Score=81.64 Aligned_cols=44 Identities=27% Similarity=0.714 Sum_probs=38.7
Q ss_pred CccccccccCcCceecCCCCcccHhhHHHHh-hcCCCCcCcccCc
Q 029109 154 DECGICMENCTKMVLPNCGHSLCVNCFHDWN-ARSQSCLFAVAAY 197 (199)
Q Consensus 154 ~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~-~~s~~CP~CR~~l 197 (199)
..||.|-+.+.++|.+.|||.||..|+..-. .++..||.|-.+|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4799999989899999999999999999755 5688999998775
No 37
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.81 E-value=6.8e-06 Score=74.53 Aligned_cols=45 Identities=33% Similarity=0.875 Sum_probs=38.0
Q ss_pred CccccccccCcCceecCCCCcccHhhHHHHhhc--CCCCcCcccCcc
Q 029109 154 DECGICMENCTKMVLPNCGHSLCVNCFHDWNAR--SQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~--s~~CP~CR~~lk 198 (199)
..|-||-|...++-.-+|||.+|..|+..|... .++||+||-.||
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 369999998877555559999999999999854 579999998876
No 38
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=4.6e-06 Score=59.25 Aligned_cols=44 Identities=23% Similarity=0.636 Sum_probs=32.8
Q ss_pred CccccccccCc-------------CceecCCCCcccHhhHHHHhhc---CCCCcCcccCc
Q 029109 154 DECGICMENCT-------------KMVLPNCGHSLCVNCFHDWNAR---SQSCLFAVAAY 197 (199)
Q Consensus 154 ~eC~IClE~~~-------------~~vlp~CgH~FC~~Ci~~W~~~---s~~CP~CR~~l 197 (199)
+.|+||.-.+. +.|+--|.|.||..||.+|+.. +..||+||+..
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 48888863221 2444569999999999999864 45899999864
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.71 E-value=1.6e-05 Score=78.37 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=36.7
Q ss_pred CCCCCcccccccc--------CcCceecCCCCcccHhhHHHHhhcC--CCCcCcccCcc
Q 029109 150 LDRNDECGICMEN--------CTKMVLPNCGHSLCVNCFHDWNARS--QSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~--------~~~~vlp~CgH~FC~~Ci~~W~~~s--~~CP~CR~~lk 198 (199)
.+..+||+||+-. .++.- |.|.|.||..|+.+|.+.+ .+||.||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC-~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRC-ATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCcccc-chhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3556799999832 22333 4599999999999999874 58999998764
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.1e-06 Score=74.73 Aligned_cols=47 Identities=23% Similarity=0.482 Sum_probs=38.5
Q ss_pred CCCCccccccccCcC-ceecCCCCcccHhhHHHHhhc-CCCCcCcccCc
Q 029109 151 DRNDECGICMENCTK-MVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~~-~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~l 197 (199)
..+..|+||+++... +..+.|+|.||..||..-+.. ...||.||..+
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 446799999988765 556889999999999877665 57999999765
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.68 E-value=2.2e-05 Score=71.66 Aligned_cols=48 Identities=31% Similarity=0.626 Sum_probs=42.5
Q ss_pred CCCCCccccccccCcCceec-CCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 150 LDRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
.+++..|+||+-...+++.+ .|||.||..|+..|...+..||.||..+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~ 66 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQEL 66 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCccccccc
Confidence 46678999999888888873 8999999999999999999999998765
No 42
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.8e-05 Score=73.43 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=36.8
Q ss_pred CCCCccccccccCc-----------------CceecCCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCT-----------------KMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~-----------------~~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
++...|+|||.... ...+++|.|.||..|+.+|... +-.||.||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 55678999993210 1334569999999999999985 559999999874
No 43
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.63 E-value=3.6e-05 Score=50.26 Aligned_cols=39 Identities=26% Similarity=0.706 Sum_probs=30.2
Q ss_pred ccccccc---cCcCceecCCC-----CcccHhhHHHHhhcC--CCCcCcc
Q 029109 155 ECGICME---NCTKMVLPNCG-----HSLCVNCFHDWNARS--QSCLFAV 194 (199)
Q Consensus 155 eC~IClE---~~~~~vlp~Cg-----H~FC~~Ci~~W~~~s--~~CP~CR 194 (199)
.|-||++ ...+.+.| |. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889996 34445666 85 889999999999664 4899995
No 44
>PHA03096 p28-like protein; Provisional
Probab=97.55 E-value=3.3e-05 Score=67.73 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=31.8
Q ss_pred CccccccccCc--------CceecCCCCcccHhhHHHHhhcC---CCCcCccc
Q 029109 154 DECGICMENCT--------KMVLPNCGHSLCVNCFHDWNARS---QSCLFAVA 195 (199)
Q Consensus 154 ~eC~IClE~~~--------~~vlp~CgH~FC~~Ci~~W~~~s---~~CP~CR~ 195 (199)
.+|+||||... -.+|++|.|.||..|+..|...+ ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 68999996532 16789999999999999998642 35555543
No 45
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.53 E-value=6.2e-05 Score=53.97 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=27.6
Q ss_pred ceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 166 MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 166 ~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
.+---|.|.||..||.+|+.....||++|++.
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 33345999999999999999999999999864
No 46
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=1.3e-05 Score=69.98 Aligned_cols=44 Identities=27% Similarity=0.604 Sum_probs=36.3
Q ss_pred CCCccccccccCcCceecCCCC-cccHhhHHHHhhcCCCCcCcccCccC
Q 029109 152 RNDECGICMENCTKMVLPNCGH-SLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH-~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
.+..|.|||+...+-++..||| +-|.+|- ++...||+||+.|+|
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CG----krm~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCG----KRMNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhc----cccccCchHHHHHHH
Confidence 3678999999999988777999 6899994 445589999988765
No 47
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=7e-05 Score=67.18 Aligned_cols=47 Identities=21% Similarity=0.606 Sum_probs=40.7
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
.+|..|+||.......|..+|+|.-|..||.+.+.+.+.|-+|+..+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 46789999997766666666999999999999999999999998765
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.43 E-value=6e-05 Score=69.18 Aligned_cols=41 Identities=24% Similarity=0.624 Sum_probs=32.2
Q ss_pred CCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 153 NDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 153 e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
--.||||+|.... .+..-|.|+||..|+..|.. .+||.||-
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~ 219 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRY 219 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhh
Confidence 3489999976543 23346999999999999976 68999984
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.36 E-value=8.2e-05 Score=62.00 Aligned_cols=44 Identities=27% Similarity=0.560 Sum_probs=35.7
Q ss_pred CCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
-...|.||-+....+|.++|||.||..|...=.+....|-+|-.
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk 238 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGK 238 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecch
Confidence 35689999977666777889999999998776666778999854
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00078 Score=58.59 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=37.5
Q ss_pred cCCCCCCccccccccCcCcee-cCCCCcccHhhHHHHhh--cCCCCcCcccCc
Q 029109 148 KDLDRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNA--RSQSCLFAVAAY 197 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~--~s~~CP~CR~~l 197 (199)
...+.+.+|++|-|..+.|-. -.|+|.+|.-|+..-.. .+.+||.|-++.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 344677899999987766443 33999999999986443 467999997654
No 51
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.06 E-value=0.00028 Score=68.59 Aligned_cols=44 Identities=23% Similarity=0.701 Sum_probs=35.3
Q ss_pred CccccccccCcCceecCCCCcccHhhHHHHhhc--CCCCcCcccCcc
Q 029109 154 DECGICMENCTKMVLPNCGHSLCVNCFHDWNAR--SQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~--s~~CP~CR~~lk 198 (199)
..|.||++ ....+...|+|.||..|+.+-... ...||.||..++
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 555666669999999999876654 347999998764
No 52
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00019 Score=62.30 Aligned_cols=46 Identities=20% Similarity=0.581 Sum_probs=33.6
Q ss_pred CCCCccccccccC-----------cCceecCCCCcccHhhHHHHhh--cCCCCcCcccCc
Q 029109 151 DRNDECGICMENC-----------TKMVLPNCGHSLCVNCFHDWNA--RSQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~-----------~~~vlp~CgH~FC~~Ci~~W~~--~s~~CP~CR~~l 197 (199)
.++..|.||-... ....|. |+|+||-.||+.|.- +.++||.|+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHh
Confidence 3467899995221 123344 999999999999974 467999998755
No 53
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.98 E-value=0.00017 Score=63.91 Aligned_cols=48 Identities=19% Similarity=0.473 Sum_probs=39.3
Q ss_pred CCCCCccccccccCcCc-eecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 150 LDRNDECGICMENCTKM-VLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~-vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
+..-.+|.+|-....+. ..+.|-|+||.+||-+.+....+||.|...+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 35567999998766553 3367999999999999999999999997655
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00034 Score=61.31 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=39.1
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
..-|.||.+.+..+|.++|+|.||..|-..-.++...|++|-+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceeccccc
Confidence 346999999999999999999999999887777888999996653
No 55
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00047 Score=51.74 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=25.7
Q ss_pred eecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 167 VLPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 167 vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
+--.|+|+||..||.+|++....||+|-.
T Consensus 77 aWG~CNHaFH~hCisrWlktr~vCPLdn~ 105 (114)
T KOG2930|consen 77 AWGVCNHAFHFHCISRWLKTRNVCPLDNK 105 (114)
T ss_pred EeeecchHHHHHHHHHHHhhcCcCCCcCc
Confidence 34569999999999999999999999964
No 56
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.89 E-value=0.00028 Score=68.69 Aligned_cols=46 Identities=20% Similarity=0.645 Sum_probs=35.4
Q ss_pred CCCccccccccC----cCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENC----TKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~----~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
....|+||+-.+ ...--+ |+|.||..|+..|...-.+||+||..+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 456799998322 222224 9999999999999999999999998764
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.74 E-value=0.00087 Score=45.15 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=27.7
Q ss_pred CCCccccccccCcCcee-cCCCCcccHhhHHHHhhc--CCCCcC
Q 029109 152 RNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNAR--SQSCLF 192 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~--s~~CP~ 192 (199)
....|||.+....+||. ..|||.|..+.|.+|+.+ +..||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35689999977777665 589999999999999944 458998
No 58
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.56 E-value=0.0019 Score=42.12 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=20.9
Q ss_pred cccccccCcC---ceec-CCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 156 CGICMENCTK---MVLP-NCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 156 C~IClE~~~~---~vlp-~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
|++|+|.... -++| +||+..|..|+.+..+. ...||-||.+.+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 7889865422 2233 47899999999998864 779999998753
No 59
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0014 Score=58.89 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=31.5
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.-...|.||.+.....++-+|||.-| |..--. .-.+||.||+.|+
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 34568999997777766666999765 544322 2345999998775
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.28 E-value=0.0032 Score=56.61 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=37.4
Q ss_pred cCCCCCCccccccccCcCceecCCCCcccHhhHHHH--hhcCCCCcCcccC
Q 029109 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDW--NARSQSCLFAVAA 196 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W--~~~s~~CP~CR~~ 196 (199)
...|++..|.||-+..+-..+.+|+|.+|--|--+. +...+.||+||..
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 334667789999987765555559999999997644 4568899999975
No 61
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.18 E-value=0.0027 Score=42.45 Aligned_cols=44 Identities=39% Similarity=0.785 Sum_probs=33.2
Q ss_pred CCCccccccccCcC-ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTK-MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~-~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+..|-.|.....+ +++| |||..|..|..-+ +...||+|-.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFE 50 (55)
T ss_pred cceeEEEcccccccccccc-ccceeeccccChh--hccCCCCCCCccc
Confidence 45678888866555 5555 9999999997654 4578999988775
No 62
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.12 E-value=0.0031 Score=55.78 Aligned_cols=43 Identities=21% Similarity=0.521 Sum_probs=36.0
Q ss_pred CCCccccccccCcCceecCC--CCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKMVLPNC--GHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~C--gH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+-.+||||.+...+++.- | ||.-|..|-. +.+..||.||.++-
T Consensus 47 ~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCccccee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 346999999999999987 9 7999999954 44679999998873
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.70 E-value=0.023 Score=41.63 Aligned_cols=35 Identities=23% Similarity=0.701 Sum_probs=25.3
Q ss_pred cccCCCCCCccccccccCcC---ceecCCCCcccHhhHH
Q 029109 146 SDKDLDRNDECGICMENCTK---MVLPNCGHSLCVNCFH 181 (199)
Q Consensus 146 s~~~~e~e~eC~IClE~~~~---~vlp~CgH~FC~~Ci~ 181 (199)
....++++..|++|-..... .+.| |||.||..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeC-CCeEEeccccc
Confidence 33556778899999844332 4556 99999999974
No 64
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.70 E-value=0.0031 Score=57.46 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=34.7
Q ss_pred CCCCCCcccccccc-----CcCceecCCCCcccHhhHHHHhhc--CCCCcCcc
Q 029109 149 DLDRNDECGICMEN-----CTKMVLPNCGHSLCVNCFHDWNAR--SQSCLFAV 194 (199)
Q Consensus 149 ~~e~e~eC~IClE~-----~~~~vlp~CgH~FC~~Ci~~W~~~--s~~CP~CR 194 (199)
+.+-+..|+.|=|. +.-..|| |.|.||.+|..+.+.+ ..+||.||
T Consensus 361 ~~e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 361 VEETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 34556789999743 2235577 9999999999998865 46999998
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.51 E-value=0.016 Score=46.83 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=33.6
Q ss_pred CCCCccccccccCcCceec-CCCC---cccHhhHHHHhhcC--CCCcCcccCc
Q 029109 151 DRNDECGICMENCTKMVLP-NCGH---SLCVNCFHDWNARS--QSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp-~CgH---~FC~~Ci~~W~~~s--~~CP~CR~~l 197 (199)
+.+.+|=||.+.......| .|.. .-|.+|+++|...+ .+||+|+.+.
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 4567999999665444445 1223 34999999999764 5899998764
No 66
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.023 Score=56.15 Aligned_cols=40 Identities=23% Similarity=0.510 Sum_probs=31.2
Q ss_pred Ccccccc-ccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccC
Q 029109 154 DECGICM-ENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 154 ~eC~ICl-E~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
..|.+|- ...-+.|---|||+||+.|.. .....||-|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5899997 444555555699999999987 556799999864
No 67
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.85 E-value=0.069 Score=41.99 Aligned_cols=46 Identities=24% Similarity=0.555 Sum_probs=35.1
Q ss_pred CCCccccccccCcC-----ceecCCCCcccHhhHHHHhhc---CCCCcCcccCcc
Q 029109 152 RNDECGICMENCTK-----MVLPNCGHSLCVNCFHDWNAR---SQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~-----~vlp~CgH~FC~~Ci~~W~~~---s~~CP~CR~~lk 198 (199)
.-.||.||.|...+ |--= ||-..|.-|+...|+. ...||.|+.++|
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneC-CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNEC-CGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccc-cchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 44699999976544 3222 8999999999985543 579999999886
No 68
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.68 E-value=0.021 Score=59.50 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=36.1
Q ss_pred CCCCCcccccc-cc--CcCceecCCCCcccHhhHHHHhhcC----------CCCcCcccCcc
Q 029109 150 LDRNDECGICM-EN--CTKMVLPNCGHSLCVNCFHDWNARS----------QSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~ICl-E~--~~~~vlp~CgH~FC~~Ci~~W~~~s----------~~CP~CR~~lk 198 (199)
.+.++.|-||. |. ..+.+-.+|+|.||..|.+.-+++. -+||+|+.+|+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 35577899998 33 3445667799999999988544331 38999999875
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.53 E-value=0.041 Score=47.51 Aligned_cols=48 Identities=13% Similarity=0.318 Sum_probs=36.5
Q ss_pred CCCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 150 LDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+....|||....+.. +.+-+|||+|+.+++.+.. .+..||.|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3556799999844332 4555699999999999885 4668999988865
No 70
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.028 Score=50.15 Aligned_cols=43 Identities=19% Similarity=0.524 Sum_probs=35.5
Q ss_pred CCCCcccccc-ccCcCceecCCCCcccHhhHHHHhhcCCCCcCc
Q 029109 151 DRNDECGICM-ENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 151 e~e~eC~ICl-E~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
.+...|++|+ ....+.|+.--|-+||..|+-.+....+.||+=
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT 341 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVT 341 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCcc
Confidence 4567999999 455666666579999999999999999999974
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.033 Score=48.06 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.5
Q ss_pred CCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
....|+||.+..+. .+|.+|||++|.+|.+.....-..||+|-.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 45689999976554 567779999999999999888889999988775
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.025 Score=51.87 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=30.0
Q ss_pred CCccccccccCcC---ceecCCCCcccHhhHHHHhhc--------CCCCcCcc
Q 029109 153 NDECGICMENCTK---MVLPNCGHSLCVNCFHDWNAR--------SQSCLFAV 194 (199)
Q Consensus 153 e~eC~IClE~~~~---~vlp~CgH~FC~~Ci~~W~~~--------s~~CP~CR 194 (199)
-..|.||++...- .++.+|+|.||..|..++... .-.||-+.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 3589999965433 445559999999999988743 23677653
No 73
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.027 Score=47.33 Aligned_cols=40 Identities=25% Similarity=0.515 Sum_probs=30.6
Q ss_pred ccccccccCcCceecCCCC-cccHhhHHHHhhcCCCCcCcccCcc
Q 029109 155 ECGICMENCTKMVLPNCGH-SLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 155 eC~IClE~~~~~vlp~CgH-~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.|-.|-+....+++.+|.| .+|..|=.. -..||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 4889988777777666999 799999332 457999998754
No 74
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.04 Score=45.46 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=31.8
Q ss_pred CccccccccCcCce-------ecCCCCcccHhhHHHHhhc------C-----CCCcCcccCc
Q 029109 154 DECGICMENCTKMV-------LPNCGHSLCVNCFHDWNAR------S-----QSCLFAVAAY 197 (199)
Q Consensus 154 ~eC~IClE~~~~~v-------lp~CgH~FC~~Ci~~W~~~------s-----~~CP~CR~~l 197 (199)
..|+||+...-+.. -..||..||.-|+.+|++. + ..||.|-.|+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 36889984433211 2369999999999999853 1 4799998876
No 75
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.32 E-value=0.02 Score=50.66 Aligned_cols=45 Identities=16% Similarity=0.507 Sum_probs=31.5
Q ss_pred CccccccccCc--C-ceecCCCCcccHhhHHHHhh------------------c-----CCCCcCcccCcc
Q 029109 154 DECGICMENCT--K-MVLPNCGHSLCVNCFHDWNA------------------R-----SQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~--~-~vlp~CgH~FC~~Ci~~W~~------------------~-----s~~CP~CR~~lk 198 (199)
..|.||+--+. + .+.+.|-|.||..|+.+++. . ...||+||..|+
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 58999983322 1 33455999999999876652 1 136999998875
No 76
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=0.2 Score=49.88 Aligned_cols=34 Identities=29% Similarity=0.669 Sum_probs=26.0
Q ss_pred CCCCCcccccccc---CcCceecCCCCcccHhhHHHHh
Q 029109 150 LDRNDECGICMEN---CTKMVLPNCGHSLCVNCFHDWN 184 (199)
Q Consensus 150 ~e~e~eC~IClE~---~~~~vlp~CgH~FC~~Ci~~W~ 184 (199)
++..+.|.+|.-+ ..-.+.| |||.||.+|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeee-ccchHHHHHHHHHH
Confidence 4677899999843 2336667 99999999998653
No 77
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.81 E-value=0.15 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=18.6
Q ss_pred cccHhhHHHHhhc-------------CCCCcCcccCc
Q 029109 174 SLCVNCFHDWNAR-------------SQSCLFAVAAY 197 (199)
Q Consensus 174 ~FC~~Ci~~W~~~-------------s~~CP~CR~~l 197 (199)
.-|.+|+-+|+.. +..||.||+++
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4589999999842 24799999875
No 78
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.56 E-value=0.07 Score=46.76 Aligned_cols=42 Identities=29% Similarity=0.604 Sum_probs=33.0
Q ss_pred CCccccccccC-----cCceecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 153 NDECGICMENC-----TKMVLPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 153 e~eC~IClE~~-----~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
+..||||.|.. ...+++ |||..+.+|+++.....-+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 44699998542 235556 9999999999988776789999976
No 79
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.50 E-value=0.057 Score=42.44 Aligned_cols=32 Identities=25% Similarity=0.766 Sum_probs=23.5
Q ss_pred CCccccccccCcC----ceecCCC------CcccHhhHHHHhh
Q 029109 153 NDECGICMENCTK----MVLPNCG------HSLCVNCFHDWNA 185 (199)
Q Consensus 153 e~eC~IClE~~~~----~vlp~Cg------H~FC~~Ci~~W~~ 185 (199)
..||.||++.... +.++ || |.||.+|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHh
Confidence 4699999954322 3345 75 8999999999953
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.35 E-value=0.072 Score=47.27 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=31.7
Q ss_pred CccccccccCcCce-ecCCCCcccHhhHHHHhhc-CCCCcCccc
Q 029109 154 DECGICMENCTKMV-LPNCGHSLCVNCFHDWNAR-SQSCLFAVA 195 (199)
Q Consensus 154 ~eC~IClE~~~~~v-lp~CgH~FC~~Ci~~W~~~-s~~CP~CR~ 195 (199)
..|+.|--....++ .|-|+|.||.+||..-+-. -..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 68999975544433 3678999999999976654 569999953
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.49 E-value=0.12 Score=46.55 Aligned_cols=45 Identities=27% Similarity=0.722 Sum_probs=32.0
Q ss_pred CCccccccccCc---Cceec-CCCCcccHhhHHHHhhc-CCCCcCcccCc
Q 029109 153 NDECGICMENCT---KMVLP-NCGHSLCVNCFHDWNAR-SQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~---~~vlp-~CgH~FC~~Ci~~W~~~-s~~CP~CR~~l 197 (199)
|+.|+.|+|... +-..| +||-..|.-|+....+. ...||-||...
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 445999997543 22222 48999999998777655 57999999754
No 82
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.17 E-value=0.051 Score=52.82 Aligned_cols=47 Identities=21% Similarity=0.484 Sum_probs=36.7
Q ss_pred CCCccccccccCcCceecCCCCcccHhhHHHHh---hcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWN---ARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~---~~s~~CP~CR~~lk 198 (199)
.+.||+||.+....+++..|.|.||..|+..-+ .....||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 356999999887777888899999999987422 22568999986653
No 83
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.93 E-value=0.088 Score=34.26 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=22.4
Q ss_pred cCCC-CcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 169 PNCG-HSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 169 p~Cg-H~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..|. |..|..|+...+.++..||+|..++.
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 3485 99999999999999999999988764
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=0.076 Score=47.26 Aligned_cols=43 Identities=21% Similarity=0.554 Sum_probs=27.7
Q ss_pred CCccccccc---cCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCccC
Q 029109 153 NDECGICME---NCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE---~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
-.-|--|=- ..-.+ .| |.|+||.+|-+. ..-+.||.|-..+.|
T Consensus 90 VHfCd~Cd~PI~IYGRm-IP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRM-IP-CKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeecc-cc-cchhhhhhhhhc--CccccCcCcccHHHH
Confidence 345666642 22223 36 999999999642 224689999876654
No 85
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.51 E-value=0.18 Score=32.37 Aligned_cols=37 Identities=24% Similarity=0.763 Sum_probs=23.1
Q ss_pred cccccccCc---CceecCCCC-----cccHhhHHHHhhc--CCCCcCc
Q 029109 156 CGICMENCT---KMVLPNCGH-----SLCVNCFHDWNAR--SQSCLFA 193 (199)
Q Consensus 156 C~IClE~~~---~~vlp~CgH-----~FC~~Ci~~W~~~--s~~CP~C 193 (199)
|=||++... +.+.| |+- ..|.+|+.+|... ..+|++|
T Consensus 1 CrIC~~~~~~~~~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 568885432 24455 852 5689999999974 4679987
No 86
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=90.26 E-value=0.15 Score=50.60 Aligned_cols=47 Identities=30% Similarity=0.622 Sum_probs=33.4
Q ss_pred CCCCccccccccCcC--cee--cCCCCcccHhhHHHHhhcC-------CCCcCcccCc
Q 029109 151 DRNDECGICMENCTK--MVL--PNCGHSLCVNCFHDWNARS-------QSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~~--~vl--p~CgH~FC~~Ci~~W~~~s-------~~CP~CR~~l 197 (199)
.+..||-||.|.... ++- .+|-|+||+.||..|-..+ -.||-|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 345699999975433 222 3477999999999997542 2699998543
No 87
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.34 E-value=0.24 Score=51.15 Aligned_cols=42 Identities=26% Similarity=0.600 Sum_probs=35.2
Q ss_pred CCccccccccCc--CceecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 153 NDECGICMENCT--KMVLPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 153 e~eC~IClE~~~--~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
...|.||.+... ..+.. |||.+|..|...|...+..||.|..
T Consensus 1153 ~~~c~ic~dil~~~~~I~~-cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAG-CGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcCCeee-echhHhhhHHHHHHHHhccCcchhh
Confidence 448999997544 35555 9999999999999999999999963
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.77 E-value=0.46 Score=30.00 Aligned_cols=38 Identities=24% Similarity=0.509 Sum_probs=21.4
Q ss_pred cccccccCcCcee---cCCCCcccHhhHHHHhhcCC--CCcCc
Q 029109 156 CGICMENCTKMVL---PNCGHSLCVNCFHDWNARSQ--SCLFA 193 (199)
Q Consensus 156 C~IClE~~~~~vl---p~CgH~FC~~Ci~~W~~~s~--~CP~C 193 (199)
|.+|.+.....+. ++|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6678777666443 35888999999999876643 69987
No 89
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=0.34 Score=44.99 Aligned_cols=36 Identities=28% Similarity=0.828 Sum_probs=29.5
Q ss_pred CCCCccccccccCcC-ceecCCCCcccHhhHHHHhhc
Q 029109 151 DRNDECGICMENCTK-MVLPNCGHSLCVNCFHDWNAR 186 (199)
Q Consensus 151 e~e~eC~IClE~~~~-~vlp~CgH~FC~~Ci~~W~~~ 186 (199)
..+.+|+||.+.... .+..+|||.||..|+...+.+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456799999987763 667789999999999988754
No 90
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=0.95 Score=41.44 Aligned_cols=34 Identities=32% Similarity=0.900 Sum_probs=24.3
Q ss_pred CCCcccccc-ccCcC---ceecCCCCcccHhhHHHHhh
Q 029109 152 RNDECGICM-ENCTK---MVLPNCGHSLCVNCFHDWNA 185 (199)
Q Consensus 152 ~e~eC~ICl-E~~~~---~vlp~CgH~FC~~Ci~~W~~ 185 (199)
...+|+||+ +.... .....|+|.||..|..+..+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 457999999 33211 12356999999999987765
No 91
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=0.61 Score=42.68 Aligned_cols=40 Identities=18% Similarity=0.476 Sum_probs=31.1
Q ss_pred cccccc----ccCcCceecCCCCcccHhhHHHHhhcC---CCCcCccc
Q 029109 155 ECGICM----ENCTKMVLPNCGHSLCVNCFHDWNARS---QSCLFAVA 195 (199)
Q Consensus 155 eC~ICl----E~~~~~vlp~CgH~FC~~Ci~~W~~~s---~~CP~CR~ 195 (199)
.|||=- |.+.++.|+ |||+.+.+-+.+..+.. ..||.|-.
T Consensus 336 ~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 336 ICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 788855 455556667 99999999999987663 58999954
No 92
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.55 E-value=0.5 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=21.6
Q ss_pred cCCCCcccHhhHHHHhhcCCCCcC
Q 029109 169 PNCGHSLCVNCFHDWNARSQSCLF 192 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~~~s~~CP~ 192 (199)
-.|+|..|.+|..+|+.....||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCCcCCC
Confidence 349999999999999999989985
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=0.87 Score=39.06 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=31.8
Q ss_pred CCCcccccc---ccCcCceecCCCCcccHhhHHHHhhc--------CCCCcCcccCc
Q 029109 152 RNDECGICM---ENCTKMVLPNCGHSLCVNCFHDWNAR--------SQSCLFAVAAY 197 (199)
Q Consensus 152 ~e~eC~ICl---E~~~~~vlp~CgH~FC~~Ci~~W~~~--------s~~CP~CR~~l 197 (199)
..-.|..|- +.-....| .|-|.||.+|+.+|... .-.||-|-++|
T Consensus 49 Y~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 345677775 33333444 49999999999999753 24799998765
No 94
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=82.79 E-value=1.3 Score=31.77 Aligned_cols=47 Identities=19% Similarity=0.608 Sum_probs=19.8
Q ss_pred CCccccccccC-----cC--ceecCCCCcccHhhHH-HHhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENC-----TK--MVLPNCGHSLCVNCFH-DWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~-----~~--~vlp~CgH~FC~~Ci~-~W~~~s~~CP~CR~~lkr 199 (199)
...|.||=|.. -. +.--.|+--.|..|++ +....++.||.|+++.+|
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 45899997432 11 2224577789999998 455568899999988765
No 95
>PHA02862 5L protein; Provisional
Probab=81.58 E-value=0.9 Score=36.33 Aligned_cols=23 Identities=22% Similarity=0.655 Sum_probs=18.9
Q ss_pred ccHhhHHHHhhcC--CCCcCcccCc
Q 029109 175 LCVNCFHDWNARS--QSCLFAVAAY 197 (199)
Q Consensus 175 FC~~Ci~~W~~~s--~~CP~CR~~l 197 (199)
-|.+|+.+|...+ .+||+|+.+.
T Consensus 28 VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 28 VHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred HHHHHHHHHHhcCCCcCccCCCCeE
Confidence 4799999999764 5899998764
No 96
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=0.84 Score=39.76 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=33.1
Q ss_pred CCCCCccccccccCcC-----ceecCC-----CCcccHhhHHHHhhc--------CCCCcCcccC
Q 029109 150 LDRNDECGICMENCTK-----MVLPNC-----GHSLCVNCFHDWNAR--------SQSCLFAVAA 196 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~-----~vlp~C-----gH~FC~~Ci~~W~~~--------s~~CP~CR~~ 196 (199)
.+.|..|=||++...+ -|-| | .|.-|..|+..|... ..+||.|++.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 4667799999954333 3445 7 378999999999853 2379999864
No 97
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.87 E-value=1.5 Score=38.91 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=19.7
Q ss_pred CCcccHhhHHHHhh-------------cCCCCcCcccCc
Q 029109 172 GHSLCVNCFHDWNA-------------RSQSCLFAVAAY 197 (199)
Q Consensus 172 gH~FC~~Ci~~W~~-------------~s~~CP~CR~~l 197 (199)
...-|.+|+.+|+. .+.+||.||+.+
T Consensus 326 rp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 326 RPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred ccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 45678999998873 245899999864
No 98
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=75.51 E-value=1.9 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=15.4
Q ss_pred ecCCCCcccHhhHHHHhhcCCCCcCcc
Q 029109 168 LPNCGHSLCVNCFHDWNARSQSCLFAV 194 (199)
Q Consensus 168 lp~CgH~FC~~Ci~~W~~~s~~CP~CR 194 (199)
=|.|++.||.+|=.---+.-..||-|-
T Consensus 24 C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCCccccCcChhhhccccCCcCCC
Confidence 378999999999433334456899884
No 99
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.21 E-value=1.2 Score=42.94 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=16.6
Q ss_pred CCCcccHhhHHHHhhcCCCCcCc
Q 029109 171 CGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 171 CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
|++.||..| |...+..||.|
T Consensus 537 C~avfH~~C---~~r~s~~CPrC 556 (580)
T KOG1829|consen 537 CLAVFHKKC---LRRKSPCCPRC 556 (580)
T ss_pred HHHHHHHHH---HhccCCCCCch
Confidence 899999999 44556679999
No 100
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.29 E-value=1.6 Score=43.42 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=23.5
Q ss_pred ecCCCCcccHhhHHHHhhc------CCCCcCcccCc
Q 029109 168 LPNCGHSLCVNCFHDWNAR------SQSCLFAVAAY 197 (199)
Q Consensus 168 lp~CgH~FC~~Ci~~W~~~------s~~CP~CR~~l 197 (199)
+-+|+|.||..||..|... .-.|+||..-|
T Consensus 118 ~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 118 VQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred hhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3469999999999999864 34789996543
No 101
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.13 E-value=3.1 Score=37.40 Aligned_cols=47 Identities=21% Similarity=0.522 Sum_probs=30.4
Q ss_pred CCCCccccccccCc-------------------CceecCCCCcccHhhHHHHhhc---------CCCCcCcccCc
Q 029109 151 DRNDECGICMENCT-------------------KMVLPNCGHSLCVNCFHDWNAR---------SQSCLFAVAAY 197 (199)
Q Consensus 151 e~e~eC~IClE~~~-------------------~~vlp~CgH~FC~~Ci~~W~~~---------s~~CP~CR~~l 197 (199)
.++.+||+|+..-. .-.+.+|||..-.+=..-|.+. +..||||-..+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 35679999984321 1223459997666666678643 35799997654
No 102
>PLN02189 cellulose synthase
Probab=72.78 E-value=2.8 Score=42.90 Aligned_cols=47 Identities=21% Similarity=0.613 Sum_probs=33.4
Q ss_pred CCccccccccCc-----C--ceecCCCCcccHhhHHH-HhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENCT-----K--MVLPNCGHSLCVNCFHD-WNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~~-----~--~vlp~CgH~FC~~Ci~~-W~~~s~~CP~CR~~lkr 199 (199)
...|.||-|... . +.-..|+--.|..|++- ..+.+++||.|++..||
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 458999985421 1 22245777899999973 44558899999988775
No 103
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=72.38 E-value=0.31 Score=34.20 Aligned_cols=41 Identities=20% Similarity=0.467 Sum_probs=21.0
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
|..||.|...... .+ +|..|..|-.+. .....||-|..+|.
T Consensus 1 e~~CP~C~~~L~~---~~-~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW---QG-GHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE---ET-TEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE---eC-CEEECccccccc-eecccCCCcccHHH
Confidence 4579999844221 22 788888886543 33568999988875
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.84 E-value=1.9 Score=39.55 Aligned_cols=40 Identities=30% Similarity=0.793 Sum_probs=28.6
Q ss_pred CCccccccc------cCcCceecCCCCcccHhhHHHHhhcCCCCcCc
Q 029109 153 NDECGICME------NCTKMVLPNCGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 153 e~eC~IClE------~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
-..|++|.- ...-+.=. |||.||..|..+|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 457999972 22335556 99999999999998776655443
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=69.93 E-value=5.5 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=17.6
Q ss_pred CccccccccCcCce-ecCCCCcccHhhHHHHhh---cC--CCCcCcccC
Q 029109 154 DECGICMENCTKMV-LPNCGHSLCVNCFHDWNA---RS--QSCLFAVAA 196 (199)
Q Consensus 154 ~eC~IClE~~~~~v-lp~CgH~FC~~Ci~~W~~---~s--~~CP~CR~~ 196 (199)
..|+|.......++ ..+|.|.-|-+ ++.|+. +. -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888885544444 46799964432 223432 22 269999764
No 106
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=67.34 E-value=4.2 Score=41.84 Aligned_cols=47 Identities=23% Similarity=0.627 Sum_probs=33.3
Q ss_pred CCccccccccC-----cC--ceecCCCCcccHhhHH-HHhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENC-----TK--MVLPNCGHSLCVNCFH-DWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~-----~~--~vlp~CgH~FC~~Ci~-~W~~~s~~CP~CR~~lkr 199 (199)
...|-||=|.. -. +.--.|+---|..|++ +..+.++.||.|++..||
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45899997431 11 2224567779999997 455668999999988775
No 107
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.26 E-value=4.3 Score=36.46 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=34.1
Q ss_pred CccccccccCc---Cceec-CCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 154 DECGICMENCT---KMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~---~~vlp-~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..|+||.+... -..+| +|+|..|..|...-.....+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 58999997542 22332 48899999998888788899999997754
No 108
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=2.5 Score=37.47 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=26.6
Q ss_pred CccccccccCcCceecCC----CCcccHhhHHHHhhc
Q 029109 154 DECGICMENCTKMVLPNC----GHSLCVNCFHDWNAR 186 (199)
Q Consensus 154 ~eC~IClE~~~~~vlp~C----gH~FC~~Ci~~W~~~ 186 (199)
..|.+|.|...+.-+-.| .|.||..|-++-.+.
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 579999998877655567 699999998887654
No 109
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=65.56 E-value=2 Score=39.51 Aligned_cols=46 Identities=17% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCccccccccCc-------------------CceecCCCCcccHhhHHHHhhc---------CCCCcCcccCcc
Q 029109 153 NDECGICMENCT-------------------KMVLPNCGHSLCVNCFHDWNAR---------SQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~-------------------~~vlp~CgH~FC~~Ci~~W~~~---------s~~CP~CR~~lk 198 (199)
+.+|++|+..-. .-++.+|||.-=.+...-|.+. +.-||||-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 679999983210 1234459998878888889753 257999987763
No 110
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=65.53 E-value=1.3 Score=29.10 Aligned_cols=18 Identities=39% Similarity=1.165 Sum_probs=14.8
Q ss_pred ecCCCCcccHhhHHHHhh
Q 029109 168 LPNCGHSLCVNCFHDWNA 185 (199)
Q Consensus 168 lp~CgH~FC~~Ci~~W~~ 185 (199)
=|.|+|.||..|-.+|-.
T Consensus 43 C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 43 CPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCCeECCCCCCcCCC
Confidence 357999999999888853
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.54 E-value=5.3 Score=39.65 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=28.4
Q ss_pred ccccccccCcC--ceecCCCCcccHhhHHHHhhcCCCCcC
Q 029109 155 ECGICMENCTK--MVLPNCGHSLCVNCFHDWNARSQSCLF 192 (199)
Q Consensus 155 eC~IClE~~~~--~vlp~CgH~FC~~Ci~~W~~~s~~CP~ 192 (199)
.|.+|-..... .--+.|||..|.+|+.+|+.....||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 57777643322 223679999999999999998888877
No 112
>PLN02436 cellulose synthase A
Probab=64.19 E-value=5 Score=41.35 Aligned_cols=47 Identities=19% Similarity=0.562 Sum_probs=32.7
Q ss_pred CCccccccccCc-----Cc--eecCCCCcccHhhHHH-HhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENCT-----KM--VLPNCGHSLCVNCFHD-WNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~~-----~~--vlp~CgH~FC~~Ci~~-W~~~s~~CP~CR~~lkr 199 (199)
...|.||=|... .+ .=..|+-..|..|++- ..+.+++||.|++..+|
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 458999985321 12 2234677799999973 44558899999988775
No 113
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=1.2 Score=38.72 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=30.9
Q ss_pred CCccccccccC-------cCceecC-------CCCcccHhhHHHHhhc-CCCCcCccc
Q 029109 153 NDECGICMENC-------TKMVLPN-------CGHSLCVNCFHDWNAR-SQSCLFAVA 195 (199)
Q Consensus 153 e~eC~IClE~~-------~~~vlp~-------CgH~FC~~Ci~~W~~~-s~~CP~CR~ 195 (199)
+..|.||.... .+.++.. |||..|..|+..-... ...||+||.
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 35799997322 2344444 9999999999987654 368999985
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.70 E-value=3.7 Score=38.13 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=17.0
Q ss_pred CcCceecCCCCcccHhhHHHHh
Q 029109 163 CTKMVLPNCGHSLCVNCFHDWN 184 (199)
Q Consensus 163 ~~~~vlp~CgH~FC~~Ci~~W~ 184 (199)
....|..+|||.||..|..+|.
T Consensus 176 ~~~~v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 176 ESVEVDCGCGHEFCFACGEESH 197 (444)
T ss_pred CccceeCCCCchhHhhcccccc
Confidence 4446777899999999977664
No 115
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.61 E-value=7.9 Score=33.74 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=31.8
Q ss_pred ccccCCCCCCccccccccCcCceecCCCCcccHhhHHHHh
Q 029109 145 LSDKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWN 184 (199)
Q Consensus 145 ls~~~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~ 184 (199)
+....+..-+-|+.|+.++.++|..+=||.||.+||-+..
T Consensus 35 LgrDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 35 LGRDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred hcccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 3334445567899999999998877789999999998765
No 116
>PLN02400 cellulose synthase
Probab=60.23 E-value=5.6 Score=41.04 Aligned_cols=47 Identities=21% Similarity=0.628 Sum_probs=33.2
Q ss_pred CCccccccccCc-----C--ceecCCCCcccHhhHH-HHhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENCT-----K--MVLPNCGHSLCVNCFH-DWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~~-----~--~vlp~CgH~FC~~Ci~-~W~~~s~~CP~CR~~lkr 199 (199)
...|.||=|..- . +.--.|+---|..|++ +..+.++.||.|++..||
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 458999974321 1 2224567779999997 455558899999998875
No 117
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=59.15 E-value=2.3 Score=26.46 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=17.1
Q ss_pred cCCCCcccHhhHHHHh-hcCCCCcCccc-CccC
Q 029109 169 PNCGHSLCVNCFHDWN-ARSQSCLFAVA-AYRE 199 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~-~~s~~CP~CR~-~lkr 199 (199)
++|||.|-..- ... .....||.|.+ .++|
T Consensus 9 ~~Cg~~fe~~~--~~~~~~~~~CP~Cg~~~~~r 39 (42)
T PF09723_consen 9 EECGHEFEVLQ--SISEDDPVPCPECGSTEVRR 39 (42)
T ss_pred CCCCCEEEEEE--EcCCCCCCcCCCCCCCceEE
Confidence 46888775532 111 12458999988 6654
No 118
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.95 E-value=11 Score=28.78 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=22.9
Q ss_pred ecCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 168 LPNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 168 lp~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
=+.|.+.||.+|=.-+.+.-..||-|-.
T Consensus 84 C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 84 CAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCCCCCccccccchhhhhhccCCcCCCC
Confidence 4679999999997777777778999953
No 119
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.46 E-value=5.6 Score=33.81 Aligned_cols=41 Identities=15% Similarity=0.408 Sum_probs=32.1
Q ss_pred CccccccccCcCce-ecCCCCcccHhhHHHHhhcCCCCcCcc
Q 029109 154 DECGICMENCTKMV-LPNCGHSLCVNCFHDWNARSQSCLFAV 194 (199)
Q Consensus 154 ~eC~IClE~~~~~v-lp~CgH~FC~~Ci~~W~~~s~~CP~CR 194 (199)
.+|.+|....--.+ =-+|+=.++..|+...+++...||.|-
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchh
Confidence 48999986544332 245777899999999999989999993
No 120
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=56.38 E-value=8.3 Score=39.68 Aligned_cols=48 Identities=19% Similarity=0.618 Sum_probs=33.2
Q ss_pred CCCccccccccC-----cC--ceecCCCCcccHhhHH-HHhhcCCCCcCcccCccC
Q 029109 152 RNDECGICMENC-----TK--MVLPNCGHSLCVNCFH-DWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 152 ~e~eC~IClE~~-----~~--~vlp~CgH~FC~~Ci~-~W~~~s~~CP~CR~~lkr 199 (199)
....|.||=|.. .. +.--.|+--.|..|++ +..+.++.||.|++..+|
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 345899997432 11 2224467779999997 345558899999988775
No 121
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=54.82 E-value=2.2 Score=37.01 Aligned_cols=29 Identities=24% Similarity=0.600 Sum_probs=23.8
Q ss_pred ceecCCCCcccHhhHHHHhhc-CCCCc--Ccc
Q 029109 166 MVLPNCGHSLCVNCFHDWNAR-SQSCL--FAV 194 (199)
Q Consensus 166 ~vlp~CgH~FC~~Ci~~W~~~-s~~CP--~CR 194 (199)
.+-|.|-|.+|-+|.++.+.+ ...|| -|-
T Consensus 29 linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 29 LINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 456789999999999998876 56899 663
No 122
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.19 E-value=28 Score=27.69 Aligned_cols=22 Identities=32% Similarity=0.922 Sum_probs=15.4
Q ss_pred cCCCCCCcccccc-ccCcCceecCCCC
Q 029109 148 KDLDRNDECGICM-ENCTKMVLPNCGH 173 (199)
Q Consensus 148 ~~~e~e~eC~ICl-E~~~~~vlp~CgH 173 (199)
...+++..|.||. ..+.+ +|||
T Consensus 60 aGv~ddatC~IC~KTKFAD----G~GH 82 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFAD----GCGH 82 (169)
T ss_pred cccCcCcchhhhhhccccc----ccCc
Confidence 4567889999999 33433 5777
No 123
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.45 E-value=5.4 Score=35.56 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=36.2
Q ss_pred CCCCccccccccCcCcee-cCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.++..|=||......+.+ .+|+|.||..|-..|......||-||...+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 345577788755443332 469999999999999999999999987654
No 124
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.95 E-value=15 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.455 Sum_probs=20.3
Q ss_pred CCC--cccHhhHHHHhhcCCCCcCcccCcc
Q 029109 171 CGH--SLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 171 CgH--~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
|.+ .||..|.+.-+ ...||.|-+.+.
T Consensus 25 CSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 25 CSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred EeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 665 79999988765 468999977654
No 125
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.46 E-value=3.5 Score=35.99 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCccccccccCcC-ceec----CCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 152 RNDECGICMENCTK-MVLP----NCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 152 ~e~eC~IClE~~~~-~vlp----~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
....||||=....- .+.. +=.|.+|.-|-.+|.-....||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 34699999744322 2222 23578999999999988889999943
No 126
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=48.07 E-value=9.8 Score=26.43 Aligned_cols=12 Identities=33% Similarity=1.157 Sum_probs=8.5
Q ss_pred cccHhhHHHHhh
Q 029109 174 SLCVNCFHDWNA 185 (199)
Q Consensus 174 ~FC~~Ci~~W~~ 185 (199)
-||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999974
No 127
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=4.9 Score=37.06 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCccccccccC----cCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 153 NDECGICMENC----TKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~----~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
-..|.||.+-. .+.--..|||..+..|+++|+.....||.||..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 34799997432 22222359999999999999998889999987664
No 128
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.20 E-value=7.5 Score=34.74 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCCccccccccCcC-ce-e---cCCCCcccHhhHHHHhhcCCCCcCccc
Q 029109 152 RNDECGICMENCTK-MV-L---PNCGHSLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 152 ~e~eC~IClE~~~~-~v-l---p~CgH~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
....||+|=....- ++ + .+=.|..|.-|-.+|.-....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 46799999754322 22 1 112357899999999998899999964
No 129
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=46.12 E-value=10 Score=32.68 Aligned_cols=44 Identities=20% Similarity=0.601 Sum_probs=31.0
Q ss_pred CCccccccccCc-----CceecCCC-----CcccHhhHHHHhh--cCCCCcCcccCc
Q 029109 153 NDECGICMENCT-----KMVLPNCG-----HSLCVNCFHDWNA--RSQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~-----~~vlp~Cg-----H~FC~~Ci~~W~~--~s~~CP~CR~~l 197 (199)
+..|=||.+... +.+.| |. +..|..|+..|.. ....|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 468999985332 23444 74 4568999999997 456899997654
No 130
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=44.51 E-value=17 Score=32.75 Aligned_cols=41 Identities=2% Similarity=-0.271 Sum_probs=31.9
Q ss_pred CCccccccccCcCceecCCCC-cccHhhHHHHhhcCCCCcCccc
Q 029109 153 NDECGICMENCTKMVLPNCGH-SLCVNCFHDWNARSQSCLFAVA 195 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH-~FC~~Ci~~W~~~s~~CP~CR~ 195 (199)
..+|-.|-+.....++.+|+| .||.+|-. ...+.+||.|-.
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~ 384 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDH 384 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccc
Confidence 458999988776677777999 59999965 445779999954
No 131
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=42.76 E-value=12 Score=24.16 Aligned_cols=38 Identities=13% Similarity=0.327 Sum_probs=19.9
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhc--CCCCcCcccCc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR--SQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~--s~~CP~CR~~l 197 (199)
...||.|-+..+... +...|...-... ...||+|...+
T Consensus 2 ~f~CP~C~~~~~~~~-------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS-------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHH-------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 357888877333222 223444443322 34788886543
No 132
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=42.14 E-value=3.6 Score=26.80 Aligned_cols=16 Identities=38% Similarity=1.296 Sum_probs=13.5
Q ss_pred cCCCCcccHhhHHHHh
Q 029109 169 PNCGHSLCVNCFHDWN 184 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~ 184 (199)
+.|++.||..|-..|-
T Consensus 44 ~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 44 PSCGTEFCFKCGEPWH 59 (64)
T ss_dssp TSCCSEECSSSTSESC
T ss_pred CCCCCcCccccCcccC
Confidence 5699999999988774
No 133
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=40.94 E-value=5.4 Score=21.74 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=6.5
Q ss_pred hcCCCCcCcccC
Q 029109 185 ARSQSCLFAVAA 196 (199)
Q Consensus 185 ~~s~~CP~CR~~ 196 (199)
...+-||.|-.+
T Consensus 11 ~~~~fC~~CG~~ 22 (23)
T PF13240_consen 11 DDAKFCPNCGTP 22 (23)
T ss_pred CcCcchhhhCCc
Confidence 334556666544
No 134
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.17 E-value=18 Score=30.89 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=19.3
Q ss_pred ccHhhHHHHhhcCCCCcCcccC
Q 029109 175 LCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 175 FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
-|.+|..+...+-..||+|++.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~K 217 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAK 217 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccc
Confidence 4899999998888999999765
No 135
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=39.94 E-value=18 Score=32.77 Aligned_cols=30 Identities=17% Similarity=0.559 Sum_probs=0.0
Q ss_pred CCCCcccHhhHHHHhhcC---------------------------------------CCCcCcccCccC
Q 029109 170 NCGHSLCVNCFHDWNARS---------------------------------------QSCLFAVAAYRE 199 (199)
Q Consensus 170 ~CgH~FC~~Ci~~W~~~s---------------------------------------~~CP~CR~~lkr 199 (199)
+||-+||.+|.+.+.... +.||.|+.+..|
T Consensus 341 gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~as~~TIk~tTkpCPkChvptEr 409 (446)
T KOG0006|consen 341 GCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAASKETIKKTTKPCPKCHVPTER 409 (446)
T ss_pred CchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhhhhhhhhhccCCCCCccCcccc
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.37 E-value=20 Score=25.43 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=17.8
Q ss_pred CCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 172 GHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 172 gH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
.|.||..|.+.-+ +..||.|-..+
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGel 51 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGEL 51 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchh
Confidence 4789999987543 47899996554
No 137
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=39.16 E-value=60 Score=24.44 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=20.7
Q ss_pred CCCCccccccccC-----cCceecCCCCcccHhhHH
Q 029109 151 DRNDECGICMENC-----TKMVLPNCGHSLCVNCFH 181 (199)
Q Consensus 151 e~e~eC~IClE~~-----~~~vlp~CgH~FC~~Ci~ 181 (199)
..+..|.+|...+ ...+=+.|.|.+|.+|-.
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE
T ss_pred cCCcchhhhCCcccccCCCCCcCCcCCccccCccCC
Confidence 3567999998543 234447799999999943
No 138
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.10 E-value=14 Score=29.11 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=20.1
Q ss_pred cccccccCcCceecCCCCcccHhhHHHHh
Q 029109 156 CGICMENCTKMVLPNCGHSLCVNCFHDWN 184 (199)
Q Consensus 156 C~IClE~~~~~vlp~CgH~FC~~Ci~~W~ 184 (199)
=-||.....+++.-.|||+||-. -++|.
T Consensus 60 lfi~qs~~~rv~rcecghsf~d~-r~nwk 87 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFGDY-RENWK 87 (165)
T ss_pred EEEEecccccEEEEeccccccCh-hhCce
Confidence 34888887777777899999863 23453
No 139
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.01 E-value=10 Score=33.83 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=31.0
Q ss_pred CCccccccccCcC-ceec-----CCCCcccHhhHHHHhhcCCCCcCcccC
Q 029109 153 NDECGICMENCTK-MVLP-----NCGHSLCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 153 e~eC~IClE~~~~-~vlp-----~CgH~FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
...||||=....- ++.. +=.|..|.-|-.+|.-....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4599999854432 2211 123678999999999988999999653
No 140
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.73 E-value=10 Score=31.06 Aligned_cols=25 Identities=36% Similarity=0.678 Sum_probs=16.2
Q ss_pred CCCCccccccccCcC----ceecCCCCccc
Q 029109 151 DRNDECGICMENCTK----MVLPNCGHSLC 176 (199)
Q Consensus 151 e~e~eC~IClE~~~~----~vlp~CgH~FC 176 (199)
++..||.||+|.... ..|| |-..+|
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYH 203 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYH 203 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEee
Confidence 345699999975432 4466 865554
No 141
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.00 E-value=37 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.476 Sum_probs=19.5
Q ss_pred cCC---CCcccHhhHHHHhhc---------CCCCcCccc
Q 029109 169 PNC---GHSLCVNCFHDWNAR---------SQSCLFAVA 195 (199)
Q Consensus 169 p~C---gH~FC~~Ci~~W~~~---------s~~CP~CR~ 195 (199)
++| .=.||..|+..+... .-.||.||.
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 456 557999998876532 136999986
No 142
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.78 E-value=30 Score=35.83 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 029109 10 SYRESLKALEADIQHANTL 28 (199)
Q Consensus 10 ~~~~~~~~l~~di~~~n~~ 28 (199)
-|+.||+.|-+||-|||+|
T Consensus 653 mf~~SL~rLr~~iv~AN~L 671 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTL 671 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999998
No 143
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=36.74 E-value=26 Score=31.65 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=28.7
Q ss_pred cccccccc---CcCceecCCCCcccHhhHHHHhhc---CCCCcCccc
Q 029109 155 ECGICMEN---CTKMVLPNCGHSLCVNCFHDWNAR---SQSCLFAVA 195 (199)
Q Consensus 155 eC~IClE~---~~~~vlp~CgH~FC~~Ci~~W~~~---s~~CP~CR~ 195 (199)
.||+=-|. +.+|+...|||..-.+-+++..++ +..||.|-.
T Consensus 338 iCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 338 ICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 67764432 223445559999999999988766 358999953
No 144
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.12 E-value=11 Score=21.16 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=3.5
Q ss_pred cCCCCcc
Q 029109 169 PNCGHSL 175 (199)
Q Consensus 169 p~CgH~F 175 (199)
|.|||.|
T Consensus 18 p~CG~~F 24 (26)
T PF10571_consen 18 PHCGYDF 24 (26)
T ss_pred CCCCCCC
Confidence 4455544
No 145
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=35.99 E-value=12 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.739 Sum_probs=21.4
Q ss_pred Ccccccc-ccCcCceecCCC----Cccc-HhhHHHHhhcC
Q 029109 154 DECGICM-ENCTKMVLPNCG----HSLC-VNCFHDWNARS 187 (199)
Q Consensus 154 ~eC~ICl-E~~~~~vlp~Cg----H~FC-~~Ci~~W~~~s 187 (199)
..|.+|+ |......++.=+ +.|| .+|+.+|..+.
T Consensus 12 ~sC~vC~KEIPl~~a~t~E~~eYV~hFCGLeCY~~w~a~~ 51 (70)
T PF11809_consen 12 TSCCVCCKEIPLDAAFTPEAAEYVEHFCGLECYQRWQARA 51 (70)
T ss_pred chHHHHhhhCChhhccCcchHHHHHHHhhHHHHHHHHHHH
Confidence 5799998 554443333233 3466 58999998653
No 146
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=18 Score=34.54 Aligned_cols=44 Identities=20% Similarity=0.606 Sum_probs=32.1
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+..|.||.+...-.+ ++|. +..|+..|...+..||.|++.++
T Consensus 477 ~~~~~~~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEMSARI-TPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHHHhcc-cccc---chhHHHhhhhhccccCCCchhhh
Confidence 34568999984443334 3477 57888899999999999987653
No 147
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.48 E-value=34 Score=29.95 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCCcccccc-ccCcC---ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICM-ENCTK---MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~ICl-E~~~~---~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
....|||=- |+... .++-.|||+|-.+-+.+.. +..|+.|-+..+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc
Confidence 356899874 66544 5566799999888776653 579999987754
No 148
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=34.05 E-value=14 Score=23.89 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.0
Q ss_pred CCcCcccCc
Q 029109 189 SCLFAVAAY 197 (199)
Q Consensus 189 ~CP~CR~~l 197 (199)
.||+|..+|
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 677776655
No 149
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.31 E-value=13 Score=33.43 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCCCccccccccCcCceecCCCC-cccHhhHHHH-hhcCCCCcCccc
Q 029109 151 DRNDECGICMENCTKMVLPNCGH-SLCVNCFHDW-NARSQSCLFAVA 195 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH-~FC~~Ci~~W-~~~s~~CP~CR~ 195 (199)
.+...|.+|.+......+-+|+| .||..|.-.- .++..+||+|-.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~t 180 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQT 180 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhh
Confidence 34568999998777666666999 7999995543 566778999854
No 150
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=33.05 E-value=43 Score=29.51 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=12.6
Q ss_pred ccHhhHHHHhh-cCCCCc
Q 029109 175 LCVNCFHDWNA-RSQSCL 191 (199)
Q Consensus 175 FC~~Ci~~W~~-~s~~CP 191 (199)
=|.+|+++|.- -.+.||
T Consensus 57 GHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 57 GHRDCFEKYHLIANQDCP 74 (285)
T ss_pred chHHHHHHHHHHHcCCCC
Confidence 35899999864 366788
No 151
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=32.85 E-value=31 Score=22.30 Aligned_cols=9 Identities=22% Similarity=0.785 Sum_probs=6.4
Q ss_pred hcCCCCcCc
Q 029109 185 ARSQSCLFA 193 (199)
Q Consensus 185 ~~s~~CP~C 193 (199)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 345689988
No 152
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.29 E-value=17 Score=36.47 Aligned_cols=41 Identities=24% Similarity=0.566 Sum_probs=27.4
Q ss_pred CCCCccccccccCc--------CceecCCCCcccHhhHHHHhhcCCCCcCc
Q 029109 151 DRNDECGICMENCT--------KMVLPNCGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 151 e~e~eC~IClE~~~--------~~vlp~CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
..+..|.-|.+... ..|+- |||.||..|+..-..+.+ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 34458999986543 24555 999999999876544433 5444
No 153
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=31.48 E-value=28 Score=30.06 Aligned_cols=22 Identities=18% Similarity=0.602 Sum_probs=18.6
Q ss_pred ccHhhHHHHhhcCCCCcCcccC
Q 029109 175 LCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 175 FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
-|.+|-.+...+-..||+|++.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaK 272 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAK 272 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhc
Confidence 4789988888888999999764
No 154
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.97 E-value=32 Score=33.99 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=15.7
Q ss_pred ceecCCCCcccHhhHHHHhh
Q 029109 166 MVLPNCGHSLCVNCFHDWNA 185 (199)
Q Consensus 166 ~vlp~CgH~FC~~Ci~~W~~ 185 (199)
+|.+.|||..|..|....-.
T Consensus 28 Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 28 PVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred cccccccchHHHHHHHhHhh
Confidence 45567999999999886544
No 155
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=28.16 E-value=65 Score=17.34 Aligned_cols=13 Identities=46% Similarity=0.437 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q 029109 15 LKALEADIQHANT 27 (199)
Q Consensus 15 ~~~l~~di~~~n~ 27 (199)
=|.||||-|..++
T Consensus 3 kk~lEa~~qkLe~ 15 (21)
T PF02370_consen 3 KKQLEADHQKLEA 15 (21)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4789999887664
No 156
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=28.06 E-value=32 Score=23.32 Aligned_cols=12 Identities=8% Similarity=0.230 Sum_probs=9.3
Q ss_pred CCCCcCcccCcc
Q 029109 187 SQSCLFAVAAYR 198 (199)
Q Consensus 187 s~~CP~CR~~lk 198 (199)
...||+|.++.+
T Consensus 39 ~p~CPlC~s~M~ 50 (59)
T PF14169_consen 39 EPVCPLCKSPMV 50 (59)
T ss_pred CccCCCcCCccc
Confidence 468999988765
No 157
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.66 E-value=20 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=15.9
Q ss_pred cCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 169 PNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
|+|+|.. .-+.+.+.|+.|++|+.
T Consensus 73 P~C~K~T------KmLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 73 PNCGKQT------KMLGRVDACMHCKEPLT 96 (114)
T ss_pred CCCCChH------hhhchhhccCcCCCcCc
Confidence 5666632 23456678999999874
No 158
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.19 E-value=28 Score=25.77 Aligned_cols=12 Identities=33% Similarity=1.204 Sum_probs=10.4
Q ss_pred cccHhhHHHHhh
Q 029109 174 SLCVNCFHDWNA 185 (199)
Q Consensus 174 ~FC~~Ci~~W~~ 185 (199)
-||..|+.+|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999974
No 159
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=26.82 E-value=45 Score=27.68 Aligned_cols=37 Identities=24% Similarity=0.556 Sum_probs=24.7
Q ss_pred CCcccccccc-----CcC---ceecCCCCcccHhhHHHHhhcCCCCcCcc
Q 029109 153 NDECGICMEN-----CTK---MVLPNCGHSLCVNCFHDWNARSQSCLFAV 194 (199)
Q Consensus 153 e~eC~IClE~-----~~~---~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR 194 (199)
...|.||-+. +.. ..=+.|+-.||..|+. ...||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 4578888732 111 1126789999999964 26799994
No 160
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=26.47 E-value=19 Score=36.23 Aligned_cols=43 Identities=23% Similarity=0.794 Sum_probs=29.5
Q ss_pred CCccccccccCc--CceecCCCCcccHhhHHHHh----hc--CCCCcCccc
Q 029109 153 NDECGICMENCT--KMVLPNCGHSLCVNCFHDWN----AR--SQSCLFAVA 195 (199)
Q Consensus 153 e~eC~IClE~~~--~~vlp~CgH~FC~~Ci~~W~----~~--s~~CP~CR~ 195 (199)
...|-.|..... --+=+.|+|.+|..|++.|. .. -..|++|+.
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~ 279 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWL 279 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHH
Confidence 347888873322 23346799999999999994 11 247888865
No 161
>PLN02248 cellulose synthase-like protein
Probab=26.13 E-value=45 Score=34.80 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=25.4
Q ss_pred CCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 170 NCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 170 ~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.|++..|.+|+.+-.+....||-|+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccc
Confidence 46889999999999888889999998764
No 162
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=26.00 E-value=34 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.633 Sum_probs=22.3
Q ss_pred CCCccccccccCcCceecCCCCcccHhh----HHHHhhc
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNC----FHDWNAR 186 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~C----i~~W~~~ 186 (199)
....|.=|-... .+--+|+|.+|..| -++|...
T Consensus 41 ~~~~C~~Cg~~~--~~~~SCk~R~CP~C~~~~~~~W~~~ 77 (111)
T PF14319_consen 41 HRYRCEDCGHEK--IVYNSCKNRHCPSCQAKATEQWIEK 77 (111)
T ss_pred ceeecCCCCceE--EecCcccCcCCCCCCChHHHHHHHH
Confidence 345787776443 34457999999999 3467754
No 163
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.92 E-value=26 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.644 Sum_probs=15.9
Q ss_pred CCCccccccccCcCc----eecCCCCcccHhhHHHH
Q 029109 152 RNDECGICMENCTKM----VLPNCGHSLCVNCFHDW 183 (199)
Q Consensus 152 ~e~eC~IClE~~~~~----vlp~CgH~FC~~Ci~~W 183 (199)
+...|.+|...+.-. -=..||+.||.+|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 346899998666431 12469999999997644
No 164
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=25.39 E-value=33 Score=31.92 Aligned_cols=32 Identities=31% Similarity=0.838 Sum_probs=21.4
Q ss_pred CCCcccccccc--C-cCceecCCCCcccHhhHHHHh
Q 029109 152 RNDECGICMEN--C-TKMVLPNCGHSLCVNCFHDWN 184 (199)
Q Consensus 152 ~e~eC~IClE~--~-~~~vlp~CgH~FC~~Ci~~W~ 184 (199)
+..+|+||+-. - ...+.- |.-..|.+|+-+..
T Consensus 73 r~~ecpicflyyps~~n~~rc-C~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRC-CSETICGECFAPFG 107 (482)
T ss_pred ccccCceeeeecccccchhhh-hccchhhhheeccc
Confidence 34699999832 2 223333 77899999987664
No 165
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=24.60 E-value=32 Score=27.97 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=8.4
Q ss_pred CCCcCcccCcc
Q 029109 188 QSCLFAVAAYR 198 (199)
Q Consensus 188 ~~CP~CR~~lk 198 (199)
-.||+||+.++
T Consensus 81 L~CPLCRG~V~ 91 (162)
T PF07800_consen 81 LACPLCRGEVK 91 (162)
T ss_pred ccCccccCcee
Confidence 46888888775
No 166
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=23.54 E-value=34 Score=21.64 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=7.5
Q ss_pred CCCcCccc-Ccc
Q 029109 188 QSCLFAVA-AYR 198 (199)
Q Consensus 188 ~~CP~CR~-~lk 198 (199)
..||.|.. .++
T Consensus 27 ~~CP~Cg~~~~~ 38 (52)
T TIGR02605 27 ATCPECGGEKLR 38 (52)
T ss_pred CCCCCCCCCcee
Confidence 36999976 443
No 167
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.85 E-value=54 Score=19.06 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=6.5
Q ss_pred CCCCcCcccC
Q 029109 187 SQSCLFAVAA 196 (199)
Q Consensus 187 s~~CP~CR~~ 196 (199)
...||.|.++
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 3478888653
No 168
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=22.75 E-value=43 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=12.4
Q ss_pred cCCCCcccHhhHHHHhhcCCCCcCcccC
Q 029109 169 PNCGHSLCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
++|||.|.. .+..||.|..+
T Consensus 33 ~~CG~v~~P--------Pr~~Cp~C~~~ 52 (140)
T COG1545 33 KKCGRVYFP--------PRAYCPKCGSE 52 (140)
T ss_pred CCCCeEEcC--------CcccCCCCCCC
Confidence 457776654 44567777655
No 169
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=22.51 E-value=71 Score=17.99 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=19.1
Q ss_pred cccccccCcC--ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 156 CGICMENCTK--MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 156 C~IClE~~~~--~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
|..|-+.... .++..=+..||..| ..|..|..+|.
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcCc
Confidence 5566544332 22221256677766 36778877663
No 170
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the