Query 029109
Match_columns 199
No_of_seqs 225 out of 1372
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.5 1.9E-14 6.4E-19 93.8 4.1 48 151-198 3-54 (55)
2 4ayc_A E3 ubiquitin-protein li 99.5 9.8E-14 3.4E-18 107.3 8.4 48 151-198 51-98 (138)
3 2ea6_A Ring finger protein 4; 99.5 2.7E-14 9.2E-19 96.7 3.5 51 149-199 11-68 (69)
4 3ng2_A RNF4, snurf, ring finge 99.4 2.8E-14 9.7E-19 97.4 3.2 49 150-198 7-62 (71)
5 2djb_A Polycomb group ring fin 99.4 7.5E-14 2.6E-18 96.2 4.7 50 149-198 11-61 (72)
6 2csy_A Zinc finger protein 183 99.4 1.1E-13 3.6E-18 97.4 4.9 50 149-198 11-60 (81)
7 2d8t_A Dactylidin, ring finger 99.4 8.3E-14 2.9E-18 95.7 3.7 49 150-198 12-60 (71)
8 2ecy_A TNF receptor-associated 99.4 1.3E-13 4.6E-18 93.3 4.3 51 149-199 11-62 (66)
9 2ysl_A Tripartite motif-contai 99.4 1.9E-13 6.5E-18 93.8 5.2 51 149-199 16-69 (73)
10 2ecm_A Ring finger and CHY zin 99.4 1.8E-13 6.3E-18 88.9 4.4 48 151-198 3-54 (55)
11 2xeu_A Ring finger protein 4; 99.4 8.4E-14 2.9E-18 92.9 2.7 47 152-198 2-55 (64)
12 2yur_A Retinoblastoma-binding 99.4 2.1E-13 7.1E-18 94.6 4.5 51 148-198 10-63 (74)
13 1t1h_A Gspef-atpub14, armadill 99.4 1.9E-13 6.5E-18 95.2 4.3 50 149-198 4-54 (78)
14 2ecl_A Ring-box protein 2; RNF 99.4 2.1E-13 7.1E-18 96.6 4.1 47 152-198 14-75 (81)
15 2kiz_A E3 ubiquitin-protein li 99.4 3.2E-13 1.1E-17 92.0 4.7 49 150-198 11-62 (69)
16 1chc_A Equine herpes virus-1 r 99.4 2.8E-13 9.7E-18 91.8 4.0 48 151-198 3-51 (68)
17 2ct2_A Tripartite motif protei 99.4 4.5E-13 1.5E-17 94.9 5.1 51 148-198 10-67 (88)
18 2ecn_A Ring finger protein 141 99.4 1.5E-13 5E-18 93.9 2.0 49 149-198 11-59 (70)
19 2ecw_A Tripartite motif-contai 99.4 5.3E-13 1.8E-17 93.5 4.9 50 149-198 15-70 (85)
20 2egp_A Tripartite motif-contai 99.4 2E-13 7E-18 94.9 2.7 50 149-198 8-64 (79)
21 2ect_A Ring finger protein 126 99.4 4.6E-13 1.6E-17 93.2 4.2 50 149-198 11-63 (78)
22 3ztg_A E3 ubiquitin-protein li 99.4 5.4E-13 1.9E-17 95.7 4.7 50 148-197 8-60 (92)
23 2ep4_A Ring finger protein 24; 99.4 4.3E-13 1.5E-17 92.5 3.9 49 149-198 11-63 (74)
24 3lrq_A E3 ubiquitin-protein li 99.3 2.8E-13 9.7E-18 99.3 3.1 48 151-198 20-69 (100)
25 1x4j_A Ring finger protein 38; 99.3 5.1E-13 1.7E-17 92.6 3.6 48 150-198 20-71 (75)
26 2l0b_A E3 ubiquitin-protein li 99.3 5.3E-13 1.8E-17 96.2 3.7 48 150-198 37-88 (91)
27 2ecv_A Tripartite motif-contai 99.3 9E-13 3.1E-17 92.3 4.7 50 149-198 15-70 (85)
28 1g25_A CDK-activating kinase a 99.3 7.6E-13 2.6E-17 89.2 3.4 48 152-199 2-55 (65)
29 1v87_A Deltex protein 2; ring- 99.3 1E-12 3.5E-17 97.8 4.4 48 151-198 23-93 (114)
30 2ysj_A Tripartite motif-contai 99.3 1.7E-12 5.9E-17 86.9 4.8 45 149-193 16-63 (63)
31 2ckl_A Polycomb group ring fin 99.3 8.2E-13 2.8E-17 97.7 2.9 48 151-198 13-61 (108)
32 2y43_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 95.0 3.4 47 152-198 21-68 (99)
33 3fl2_A E3 ubiquitin-protein li 99.3 1.4E-12 4.6E-17 98.8 3.4 48 151-198 50-98 (124)
34 2ecj_A Tripartite motif-contai 99.3 3.4E-12 1.2E-16 83.6 4.5 45 149-193 11-58 (58)
35 2kr4_A Ubiquitin conjugation f 99.2 5.1E-12 1.7E-16 90.3 4.6 50 149-198 10-59 (85)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 2.6E-12 8.8E-17 96.8 3.0 48 151-198 5-59 (133)
37 2vje_A E3 ubiquitin-protein li 99.2 2.5E-12 8.7E-17 87.2 2.7 48 151-198 6-56 (64)
38 3hct_A TNF receptor-associated 99.2 3.3E-12 1.1E-16 96.0 3.3 50 149-198 14-64 (118)
39 1e4u_A Transcriptional repress 99.2 7.7E-12 2.6E-16 88.3 4.8 50 149-198 7-61 (78)
40 1jm7_A BRCA1, breast cancer ty 99.2 3.8E-12 1.3E-16 94.0 3.2 46 153-198 21-69 (112)
41 2kre_A Ubiquitin conjugation f 99.2 7.5E-12 2.5E-16 92.3 4.1 50 149-198 25-74 (100)
42 1wgm_A Ubiquitin conjugation f 99.2 1.1E-11 3.7E-16 91.1 4.8 50 149-198 18-68 (98)
43 3dpl_R Ring-box protein 1; ubi 99.2 8.7E-12 3E-16 93.0 4.2 46 152-197 36-99 (106)
44 3l11_A E3 ubiquitin-protein li 99.2 1.9E-12 6.5E-17 96.7 0.3 48 151-198 13-61 (115)
45 2ckl_B Ubiquitin ligase protei 99.2 4.9E-12 1.7E-16 100.1 2.5 48 151-198 52-101 (165)
46 1z6u_A NP95-like ring finger p 99.2 7.6E-12 2.6E-16 98.4 3.4 48 151-198 76-124 (150)
47 2vje_B MDM4 protein; proto-onc 99.2 5.5E-12 1.9E-16 85.3 1.8 48 151-198 5-55 (63)
48 1rmd_A RAG1; V(D)J recombinati 99.2 8.6E-12 2.9E-16 93.2 3.1 47 152-198 22-69 (116)
49 3knv_A TNF receptor-associated 99.1 1.1E-11 3.8E-16 96.6 2.7 49 149-197 27-76 (141)
50 4ap4_A E3 ubiquitin ligase RNF 99.1 1.1E-11 3.7E-16 93.3 2.2 48 151-198 70-124 (133)
51 1bor_A Transcription factor PM 99.1 1.5E-11 5E-16 81.1 2.0 45 151-198 4-48 (56)
52 4ic3_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 86.1 1.1 43 152-198 23-66 (74)
53 1jm7_B BARD1, BRCA1-associated 99.1 1.7E-11 5.8E-16 92.0 1.8 46 151-198 20-66 (117)
54 2y1n_A E3 ubiquitin-protein li 99.1 4.9E-11 1.7E-15 106.9 4.3 48 151-198 330-378 (389)
55 2c2l_A CHIP, carboxy terminus 99.1 6E-11 2E-15 99.6 4.6 50 149-198 204-254 (281)
56 4a0k_B E3 ubiquitin-protein li 99.0 2.1E-11 7E-16 92.6 0.2 46 152-197 47-110 (117)
57 3hcs_A TNF receptor-associated 99.0 9.1E-11 3.1E-15 93.1 3.4 50 149-198 14-64 (170)
58 2ea5_A Cell growth regulator w 99.0 2.3E-10 8E-15 78.5 4.3 44 151-198 13-57 (68)
59 2ecg_A Baculoviral IAP repeat- 99.0 9.3E-11 3.2E-15 81.4 2.1 43 153-199 25-68 (75)
60 2yu4_A E3 SUMO-protein ligase 99.0 1.9E-10 6.7E-15 83.4 3.2 47 150-196 4-59 (94)
61 2f42_A STIP1 homology and U-bo 98.9 9.8E-10 3.3E-14 89.0 6.2 52 147-198 100-152 (179)
62 2d8s_A Cellular modulator of i 98.9 4.6E-10 1.6E-14 79.6 3.5 47 151-198 13-69 (80)
63 2yho_A E3 ubiquitin-protein li 98.9 2.1E-10 7.3E-15 80.8 0.9 42 153-198 18-60 (79)
64 2ct0_A Non-SMC element 1 homol 98.8 3.7E-09 1.3E-13 74.0 4.8 47 152-198 14-63 (74)
65 3t6p_A Baculoviral IAP repeat- 98.7 1.7E-09 5.9E-14 95.6 0.6 44 151-198 293-337 (345)
66 3htk_C E3 SUMO-protein ligase 98.6 1.3E-08 4.4E-13 86.9 3.3 48 151-198 179-231 (267)
67 1wim_A KIAA0161 protein; ring 98.6 1.6E-08 5.4E-13 72.8 2.9 46 151-196 3-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.5 2.4E-08 8.2E-13 67.1 2.3 45 154-198 4-49 (61)
69 3k1l_B Fancl; UBC, ring, RWD, 98.5 2E-08 6.9E-13 88.7 1.8 48 151-198 306-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.3E-07 7.8E-12 62.1 4.0 47 151-198 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.2 6.1E-07 2.1E-11 65.9 3.2 44 155-199 3-49 (101)
72 3nw0_A Non-structural maintena 97.5 0.00012 4E-09 61.4 5.1 45 153-197 180-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0022 7.5E-08 45.9 2.1 33 152-184 2-38 (101)
74 2ko5_A Ring finger protein Z; 93.4 0.053 1.8E-06 39.2 3.0 46 151-198 26-72 (99)
75 3m62_A Ubiquitin conjugation f 90.2 0.26 8.9E-06 48.7 4.8 51 148-198 886-937 (968)
76 1weo_A Cellulose synthase, cat 89.1 0.5 1.7E-05 33.7 4.3 47 153-199 16-70 (93)
77 2lri_C Autoimmune regulator; Z 87.7 0.46 1.6E-05 31.7 3.3 46 151-196 10-59 (66)
78 2l5u_A Chromodomain-helicase-D 81.7 0.88 3E-05 29.6 2.4 47 148-195 6-57 (61)
79 1mm2_A MI2-beta; PHD, zinc fin 79.6 0.78 2.7E-05 29.9 1.6 48 150-197 6-57 (61)
80 2yql_A PHD finger protein 21A; 78.9 0.34 1.2E-05 31.0 -0.3 48 148-195 4-55 (56)
81 2cs3_A Protein C14ORF4, MY039 78.6 1.4 4.9E-05 30.9 2.8 36 151-186 13-52 (93)
82 2lbm_A Transcriptional regulat 78.4 2.6 9E-05 32.3 4.5 47 149-195 59-116 (142)
83 1joc_A EEA1, early endosomal a 75.6 11 0.00038 27.8 7.3 32 151-182 67-102 (125)
84 2jmo_A Parkin; IBR, E3 ligase, 75.3 0.34 1.1E-05 33.4 -1.2 20 170-191 55-74 (80)
85 1z60_A TFIIH basal transcripti 73.9 1.6 5.6E-05 28.6 1.9 40 154-193 16-58 (59)
86 1wil_A KIAA1045 protein; ring 72.1 5.1 0.00018 28.2 4.2 35 149-183 11-47 (89)
87 2k16_A Transcription initiatio 70.8 1.2 4.2E-05 29.8 0.8 48 151-198 16-70 (75)
88 3ql9_A Transcriptional regulat 70.1 7.1 0.00024 29.4 5.0 49 148-196 52-111 (129)
89 1xwh_A Autoimmune regulator; P 62.8 1.4 4.8E-05 29.0 -0.2 45 151-195 6-54 (66)
90 1f62_A Transcription factor WS 61.3 5 0.00017 24.6 2.2 41 155-195 2-49 (51)
91 1fp0_A KAP-1 corepressor; PHD 61.2 3.9 0.00013 28.8 1.9 47 150-196 22-72 (88)
92 1zbd_B Rabphilin-3A; G protein 61.0 15 0.00052 27.6 5.3 30 151-180 53-87 (134)
93 2ysm_A Myeloid/lymphoid or mix 58.2 3.9 0.00013 29.3 1.5 35 151-185 5-42 (111)
94 3a1b_A DNA (cytosine-5)-methyl 57.9 11 0.00039 29.3 4.2 39 148-186 74-114 (159)
95 1wen_A Inhibitor of growth fam 56.3 9.2 0.00031 25.5 3.0 45 151-198 14-67 (71)
96 2gmg_A Hypothetical protein PF 56.2 2.6 8.7E-05 30.8 0.2 23 169-196 71-93 (105)
97 2puy_A PHD finger protein 21A; 55.5 2.5 8.5E-05 27.2 0.0 45 152-196 4-52 (60)
98 2e6r_A Jumonji/ARID domain-con 54.9 1.7 5.7E-05 30.7 -1.0 47 149-195 12-65 (92)
99 2ct7_A Ring finger protein 31; 54.1 1.1 3.8E-05 31.0 -2.0 20 166-185 44-63 (86)
100 1weu_A Inhibitor of growth fam 52.7 5.2 0.00018 28.3 1.3 44 152-198 35-87 (91)
101 2d8v_A Zinc finger FYVE domain 47.5 8.3 0.00028 25.8 1.6 33 151-184 6-39 (67)
102 2zet_C Melanophilin; complex, 47.4 24 0.00083 27.0 4.6 30 151-180 66-100 (153)
103 2yw8_A RUN and FYVE domain-con 46.4 12 0.00041 25.4 2.4 32 151-182 17-52 (82)
104 1z2q_A LM5-1; membrane protein 46.4 12 0.00043 25.5 2.5 33 150-182 18-54 (84)
105 2e6s_A E3 ubiquitin-protein li 46.2 5.8 0.0002 27.0 0.7 42 154-195 27-76 (77)
106 2pv0_B DNA (cytosine-5)-methyl 45.9 22 0.00076 31.5 4.6 47 149-195 89-147 (386)
107 1wd2_A Ariadne-1 protein homol 44.4 4.4 0.00015 26.3 -0.1 33 154-186 7-47 (60)
108 1wev_A Riken cDNA 1110020M19; 43.0 1.9 6.6E-05 30.1 -2.2 45 152-196 15-72 (88)
109 3asl_A E3 ubiquitin-protein li 42.9 6.6 0.00023 26.1 0.6 42 155-196 20-69 (70)
110 1vfy_A Phosphatidylinositol-3- 42.2 15 0.00052 24.3 2.3 28 154-181 12-43 (73)
111 1x4u_A Zinc finger, FYVE domai 41.7 15 0.0005 25.1 2.3 32 150-181 11-46 (84)
112 3v43_A Histone acetyltransfera 39.7 43 0.0015 23.8 4.7 31 151-181 3-42 (112)
113 2yt5_A Metal-response element- 39.6 12 0.00041 24.1 1.4 46 151-196 4-61 (66)
114 2o35_A Hypothetical protein DU 39.6 10 0.00035 27.4 1.2 12 174-185 42-53 (105)
115 3fyb_A Protein of unknown func 39.4 10 0.00036 27.4 1.2 12 174-185 41-52 (104)
116 3ask_A E3 ubiquitin-protein li 38.0 9.2 0.00031 31.5 0.8 42 154-195 175-224 (226)
117 1wfk_A Zinc finger, FYVE domai 37.0 21 0.00071 24.7 2.4 32 151-182 7-42 (88)
118 4gne_A Histone-lysine N-methyl 36.6 19 0.00064 26.1 2.2 44 148-194 10-60 (107)
119 3zyq_A Hepatocyte growth facto 34.2 17 0.0006 29.3 1.9 30 153-182 164-197 (226)
120 1we9_A PHD finger family prote 33.3 13 0.00043 23.8 0.7 46 151-196 4-58 (64)
121 2ku3_A Bromodomain-containing 32.8 37 0.0013 22.4 3.1 46 150-195 13-65 (71)
122 4fo9_A E3 SUMO-protein ligase 32.7 39 0.0013 29.6 4.0 45 153-197 215-264 (360)
123 1dvp_A HRS, hepatocyte growth 32.0 18 0.00063 28.8 1.7 30 153-182 161-194 (220)
124 2l43_A N-teminal domain from h 31.8 34 0.0012 23.5 2.9 47 150-196 22-75 (88)
125 3t7l_A Zinc finger FYVE domain 31.3 24 0.00083 24.3 2.0 32 152-183 19-54 (90)
126 3i2d_A E3 SUMO-protein ligase 30.8 39 0.0013 29.7 3.7 44 154-197 250-298 (371)
127 2vnf_A ING 4, P29ING4, inhibit 30.5 11 0.00039 24.1 0.1 41 152-195 9-58 (60)
128 2jrp_A Putative cytoplasmic pr 30.1 3.2 0.00011 28.9 -2.8 39 154-198 3-42 (81)
129 2fiy_A Protein FDHE homolog; F 29.8 5.5 0.00019 34.2 -2.0 46 151-196 180-231 (309)
130 3c6w_A P28ING5, inhibitor of g 26.5 16 0.00053 23.4 0.3 42 151-195 7-57 (59)
131 2jne_A Hypothetical protein YF 26.3 4.2 0.00014 29.3 -2.7 40 153-198 32-72 (101)
132 2lcq_A Putative toxin VAPC6; P 25.9 14 0.00048 28.1 -0.1 25 169-199 136-160 (165)
133 1y02_A CARP2, FYVE-ring finger 24.8 9.4 0.00032 28.3 -1.2 42 152-193 18-63 (120)
134 2kwj_A Zinc finger protein DPF 24.0 46 0.0016 23.8 2.5 29 154-182 2-40 (114)
135 1m3v_A FLIN4, fusion of the LI 23.0 56 0.0019 23.2 2.8 44 155-198 34-80 (122)
136 3mpx_A FYVE, rhogef and PH dom 22.9 18 0.00061 31.4 0.0 48 151-198 373-431 (434)
137 3shb_A E3 ubiquitin-protein li 22.9 17 0.00059 24.6 -0.1 41 155-195 28-76 (77)
138 3mjh_B Early endosome antigen 21.3 25 0.00085 20.3 0.4 7 154-160 6-12 (34)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.9e-14 Score=93.83 Aligned_cols=48 Identities=25% Similarity=0.689 Sum_probs=40.9
Q ss_pred CCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++.+|+||++.... .++|+|||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 567899999976554 556679999999999999999999999999863
No 2
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.48 E-value=9.8e-14 Score=107.28 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=43.1
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++..|+||++...+++..+|||.||..||..|+..+.+||+||.+++
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 446789999999888887779999999999999999999999999875
No 3
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.7e-14 Score=96.71 Aligned_cols=51 Identities=24% Similarity=0.596 Sum_probs=43.0
Q ss_pred CCCCCCccccccccCcCc-------eecCCCCcccHhhHHHHhhcCCCCcCcccCccC
Q 029109 149 DLDRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~-------vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
..+++.+|+||++...++ ++.+|||.||..||..|+..+.+||+||.++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999876553 566699999999999999999999999999864
No 4
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.45 E-value=2.8e-14 Score=97.38 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=42.3
Q ss_pred CCCCCccccccccCcCc-------eecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 150 LDRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~-------vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+++.+|+||++...++ +..+|||.||..|+.+|+..+.+||.||.++.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 45678999999876554 66669999999999999999999999999875
No 5
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.5e-14 Score=96.20 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCCCCCccccccccCcCcee-cCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++++.+|+||++...+++. ++|||.||..||.+|+..+..||.||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 44667899999988876654 479999999999999988899999999875
No 6
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=97.41 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=44.1
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+++.+|+||++...++++.+|||.||..|+.+|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999998888877789999999999999998899999999864
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.3e-14 Score=95.71 Aligned_cols=49 Identities=22% Similarity=0.504 Sum_probs=43.1
Q ss_pred CCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..++.+|+||++...+++..+|||.||..||.+|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3566799999988887776669999999999999998899999999875
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=93.29 Aligned_cols=51 Identities=18% Similarity=0.425 Sum_probs=43.3
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhh-cCCCCcCcccCccC
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA-RSQSCLFAVAAYRE 199 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~-~s~~CP~CR~~lkr 199 (199)
..+++.+|+||++...+++..+|||.||..|+.+|+. ....||.||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3466789999998888777777999999999999995 46799999998863
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=93.81 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=43.4
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhh---cCCCCcCcccCccC
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---RSQSCLFAVAAYRE 199 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~---~s~~CP~CR~~lkr 199 (199)
+++++.+|+||++...+++..+|||.||..|+.+|+. ....||+||.++.+
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567789999999888877767999999999999996 35689999998863
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.8e-13 Score=88.94 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=40.4
Q ss_pred CCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.++.+|+||++...+ +++.+|||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356799999976533 555669999999999999998999999999874
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=8.4e-14 Score=92.90 Aligned_cols=47 Identities=26% Similarity=0.643 Sum_probs=40.2
Q ss_pred CCCccccccccCcCc-------eecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~-------vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++.+|+||++...++ ++.+|||.||..|+.+|+..+.+||.||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 457999999876543 55669999999999999999999999999875
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=94.64 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=43.1
Q ss_pred cCCCCCCccccccccCcCceecC-CCCcccHhhHHHHhhcC--CCCcCcccCcc
Q 029109 148 KDLDRNDECGICMENCTKMVLPN-CGHSLCVNCFHDWNARS--QSCLFAVAAYR 198 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~-CgH~FC~~Ci~~W~~~s--~~CP~CR~~lk 198 (199)
.+++++..|+||++...+++..+ |||.||..||.+|+..+ ..||.||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34567789999999888877766 99999999999999865 69999999753
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.39 E-value=1.9e-13 Score=95.20 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=44.2
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
++.++..|+||++...+++..+|||.||..||.+|+.. +.+||.||.++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45678899999999888877779999999999999987 779999999874
No 14
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=96.57 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=39.0
Q ss_pred CCCccccccccCc---------------CceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCT---------------KMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~---------------~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++.+|+||++... ..++|+|+|.||..||.+|+..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4567888886553 2467789999999999999999999999999864
No 15
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=91.95 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=40.0
Q ss_pred CCCCCccccccccCc---CceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 150 LDRNDECGICMENCT---KMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~~~---~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+.+.+|+||++... .++..+|||.||..|+.+|+..+.+||+||.++.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 355679999987542 3444459999999999999999999999999875
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.37 E-value=2.8e-13 Score=91.85 Aligned_cols=48 Identities=21% Similarity=0.627 Sum_probs=41.1
Q ss_pred CCCCccccccccCcC-ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTK-MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~-~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+.+|+||++...+ ++..+|||.||..|+.+|+..+.+||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 346799999987766 355669999999999999998999999999875
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=94.87 Aligned_cols=51 Identities=37% Similarity=0.699 Sum_probs=42.8
Q ss_pred cCCCCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcC---CCCcCcccCcc
Q 029109 148 KDLDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARS---QSCLFAVAAYR 198 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s---~~CP~CR~~lk 198 (199)
..++++.+|+||++...+ +++.+|||.||..|+.+|+..+ ..||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345677899999987766 6666699999999999999875 79999999864
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=93.90 Aligned_cols=49 Identities=33% Similarity=0.922 Sum_probs=42.1
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+++.+|+||++...+.++| |||.||..|+.+|+..+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCSEEET-TTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccCcccC-CCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 345678999999887775545 9999999999999998899999998875
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=5.3e-13 Score=93.48 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=43.2
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhc------CCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR------SQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~------s~~CP~CR~~lk 198 (199)
+++++.+|+||++...+++..+|||.||..|+..|+.. ...||.||.++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34667899999998887777779999999999999987 669999999875
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=94.91 Aligned_cols=50 Identities=32% Similarity=0.651 Sum_probs=42.9
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhc-------CCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-------SQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~-------s~~CP~CR~~lk 198 (199)
+++++.+|+||++...+++..+|||.||..|+.+|+.. ...||.||.++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45678899999988877766679999999999999876 568999999875
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=4.6e-13 Score=93.23 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=40.4
Q ss_pred CCCCCCccccccccCcC---ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTK---MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~---~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..+.+.+|+||++.... .+..+|+|.||..||.+|+..+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 34567899999976543 233349999999999999998899999999875
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-13 Score=95.67 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=42.9
Q ss_pred cCCCCCCccccccccCcCceecC-CCCcccHhhHHHHhhcC--CCCcCcccCc
Q 029109 148 KDLDRNDECGICMENCTKMVLPN-CGHSLCVNCFHDWNARS--QSCLFAVAAY 197 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~-CgH~FC~~Ci~~W~~~s--~~CP~CR~~l 197 (199)
.+++++..|+||++...+++..+ |||+||..||..|+..+ ..||.||.++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34577889999999888877777 99999999999998754 5999999986
No 23
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-13 Score=92.51 Aligned_cols=49 Identities=20% Similarity=0.623 Sum_probs=40.3
Q ss_pred CCCCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+.+.+|+||++.... .++| |+|.||..||.+|+..+.+||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 34567899999976543 2335 9999999999999998889999999875
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=2.8e-13 Score=99.32 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=42.8
Q ss_pred CCCCccccccccCcCcee-cCCCCcccHhhHHHHhhcC-CCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~s-~~CP~CR~~lk 198 (199)
+++..|+||++...+++. ++|||.||..||..|+..+ ..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 445799999999988888 8899999999999999887 69999999874
No 25
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5.1e-13 Score=92.57 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=40.0
Q ss_pred CCCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 150 LDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+++.+|+||++.... .++| |+|.||..||.+|+..+.+||+||.++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 3456799999966543 4455 9999999999999999999999999875
No 26
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=5.3e-13 Score=96.24 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=40.0
Q ss_pred CCCCCccccccccCcC----ceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 150 LDRNDECGICMENCTK----MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+++.+|+||++.... .++| |||.||..||..|+..+.+||+||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3567799999965543 3456 9999999999999999999999999874
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9e-13 Score=92.30 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=43.0
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhc------CCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR------SQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~------s~~CP~CR~~lk 198 (199)
+++++.+|+||++...+++..+|||.||..|+..|+.. ...||.||.++.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 44667899999988877666679999999999999876 679999999875
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=7.6e-13 Score=89.24 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=38.3
Q ss_pred CCCccccccc-cCcCc----eecCCCCcccHhhHHHHhhc-CCCCcCcccCccC
Q 029109 152 RNDECGICME-NCTKM----VLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYRE 199 (199)
Q Consensus 152 ~e~eC~IClE-~~~~~----vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lkr 199 (199)
++.+|+||++ ...++ ++.+|||.||..|+.+|+.+ +..||.||.++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999998 55444 44569999999999999654 5689999998863
No 29
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1e-12 Score=97.78 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=37.9
Q ss_pred CCCCccccccccCcCc------------------eecCCCCcccHhhHHHHhh-----cCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKM------------------VLPNCGHSLCVNCFHDWNA-----RSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~------------------vlp~CgH~FC~~Ci~~W~~-----~s~~CP~CR~~lk 198 (199)
..+.+|+||++....+ ++++|+|.||..||..|+. .+.+||+||..+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3457999999775432 1556999999999999994 4679999998864
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=86.87 Aligned_cols=45 Identities=27% Similarity=0.655 Sum_probs=38.7
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhh---cCCCCcCc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---RSQSCLFA 193 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~---~s~~CP~C 193 (199)
+++++.+|+||++...+++..+|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567889999999888877777999999999999997 35689998
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=8.2e-13 Score=97.73 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=42.5
Q ss_pred CCCCccccccccCcCceec-CCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++..|+||++...+++.. +|||.||..||..|+..+..||.||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 5678999999988877764 79999999999999998899999998874
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=94.95 Aligned_cols=47 Identities=21% Similarity=0.546 Sum_probs=41.0
Q ss_pred CCCccccccccCcCceec-CCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++.+|+||++...+++.. +|||.||..|+..|+..+..||.||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 457999999888777554 79999999999999998899999999875
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=98.79 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=41.6
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcC-CCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s-~~CP~CR~~lk 198 (199)
+++..|+||++...+++..+|||.||..||..|+... ..||.||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 4457999999998888877799999999999999754 49999999874
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=83.61 Aligned_cols=45 Identities=29% Similarity=0.823 Sum_probs=37.8
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhh---cCCCCcCc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---RSQSCLFA 193 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~---~s~~CP~C 193 (199)
+++++.+|+||++...+++..+|||.||..||.+|+. ....||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999998887777777999999999999954 46799998
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.24 E-value=5.1e-12 Score=90.32 Aligned_cols=50 Identities=12% Similarity=-0.087 Sum_probs=44.8
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++.++..|+||++...++|..+|||+||..||..|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34678899999999999888779999999999999998889999999874
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.6e-12 Score=96.84 Aligned_cols=48 Identities=25% Similarity=0.649 Sum_probs=41.7
Q ss_pred CCCCccccccccCcCc-------eecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~-------vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.++.+|+||++...++ +.++|||.||..||.+|+..+.+||.||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4567999999877655 66679999999999999999999999999875
No 37
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.24 E-value=2.5e-12 Score=87.22 Aligned_cols=48 Identities=19% Similarity=0.462 Sum_probs=41.9
Q ss_pred CCCCccccccccCcCceec--CCCCc-ccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLP--NCGHS-LCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp--~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++.+|+||++...++++. +|||. ||..|+..|...+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4567999999988887754 59998 899999999988889999999885
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.23 E-value=3.3e-12 Score=96.04 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=43.7
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCC-CCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ-SCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~-~CP~CR~~lk 198 (199)
.++++..|+||++...+++..+|||.||..||.+|+..+. +||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 4567789999999888887777999999999999998755 9999999875
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.23 E-value=7.7e-12 Score=88.34 Aligned_cols=50 Identities=24% Similarity=0.559 Sum_probs=39.2
Q ss_pred CCCCCCccccccccCc--Cceec--CCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCT--KMVLP--NCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~--~~vlp--~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
+++++.+|+||+|... ++++. +|||.||..|+.+++.. ...||.||.++.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 4577889999998763 23333 39999999999998754 568999999875
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=3.8e-12 Score=93.98 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=39.9
Q ss_pred CCccccccccCcCceecCCCCcccHhhHHHHhhcC---CCCcCcccCcc
Q 029109 153 NDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS---QSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s---~~CP~CR~~lk 198 (199)
+.+|+||++...+++..+|||.||..|+..|+..+ ..||.||.++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 46899999988877777799999999999999865 38999999875
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.21 E-value=7.5e-12 Score=92.28 Aligned_cols=50 Identities=12% Similarity=-0.084 Sum_probs=44.8
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++.++..|+||++.+.+||..+|||+||..||..|+..+.+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 44678899999999998887779999999999999998889999999875
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.20 E-value=1.1e-11 Score=91.08 Aligned_cols=50 Identities=10% Similarity=-0.111 Sum_probs=45.2
Q ss_pred CCCCCCccccccccCcCceecCCC-CcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCG-HSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~Cg-H~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++.++..|+||++.+.+||..+|| |+||..||..|+....+||+||.++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 446788999999999998887799 99999999999988889999999875
No 43
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=8.7e-12 Score=93.01 Aligned_cols=46 Identities=22% Similarity=0.599 Sum_probs=38.1
Q ss_pred CCCccccccccCcC------------------ceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 152 RNDECGICMENCTK------------------MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 152 ~e~eC~IClE~~~~------------------~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
++..|+||++.... .++++|+|.||..||..|+..+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 45789999965442 34456999999999999999999999999985
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.19 E-value=1.9e-12 Score=96.65 Aligned_cols=48 Identities=33% Similarity=0.643 Sum_probs=41.2
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
+++..|+||++...+++..+|||.||..||..|+.. ...||.||.++.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 456799999998888776679999999999999976 568999999863
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=4.9e-12 Score=100.13 Aligned_cols=48 Identities=17% Similarity=0.423 Sum_probs=41.1
Q ss_pred CCCCccccccccCcCceec-CCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
+++..|+||++...+++.. +|||.||..||..|+.. ...||.||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4567999999888876653 79999999999999987 678999999873
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.19 E-value=7.6e-12 Score=98.39 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=42.1
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCC-CCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ-SCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~-~CP~CR~~lk 198 (199)
+++..|+||++...+++..+|||.||..||..|+.... .||.||.++.
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 45679999999988888778999999999999998754 8999999875
No 47
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.17 E-value=5.5e-12 Score=85.30 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=40.6
Q ss_pred CCCCccccccccCcCceec--CCCCc-ccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLP--NCGHS-LCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp--~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+.+|+||++...++++. +|||. ||..|+..|...+..||+||++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3456999999987775543 59998 999999999988889999999885
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.17 E-value=8.6e-12 Score=93.20 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=41.8
Q ss_pred CCCccccccccCcCceecCCCCcccHhhHHHHhhc-CCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lk 198 (199)
++..|+||++...+++..+|||.||..||.+|+.. ..+||.||.++.
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 35799999999888887789999999999999987 679999999874
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.15 E-value=1.1e-11 Score=96.56 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=43.0
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcCC-CCcCcccCc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQ-SCLFAVAAY 197 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~-~CP~CR~~l 197 (199)
.++++..|+||++...+++..+|||.||..||.+|+.... .||.||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 4577889999999998888888999999999999998654 899999864
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=1.1e-11 Score=93.35 Aligned_cols=48 Identities=25% Similarity=0.649 Sum_probs=41.4
Q ss_pred CCCCccccccccCcCc-------eecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKM-------VLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~-------vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++.+|+||++...++ +.++|||.||..|+.+|+..+.+||.||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 5667999999766553 66669999999999999999999999999875
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=1.5e-11 Score=81.10 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=37.7
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++..|+||++...+++..+|||.||..|+..| ...||.||.++.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 556799999988777776669999999998774 568999999874
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.11 E-value=1.1e-11 Score=86.12 Aligned_cols=43 Identities=26% Similarity=0.648 Sum_probs=38.1
Q ss_pred CCCccccccccCcCceecCCCCc-ccHhhHHHHhhcCCCCcCcccCcc
Q 029109 152 RNDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
++..|+||++...++++.+|||. ||..|+..| ..||+||.++.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 34699999999888887679999 999999998 78999999875
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=1.7e-11 Score=91.98 Aligned_cols=46 Identities=22% Similarity=0.469 Sum_probs=40.1
Q ss_pred CCCCccccccccCcCceec-CCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++..|+||++...+++.. +|||.||..||..|+. ..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 3467999999988887766 7999999999999987 78999998874
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.08 E-value=4.9e-11 Score=106.94 Aligned_cols=48 Identities=29% Similarity=0.788 Sum_probs=42.3
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhh-cCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA-RSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~-~s~~CP~CR~~lk 198 (199)
..+.+|+||++...++++.+|||.||..|+..|.. .+.+||+||.++.
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 34579999999888888777999999999999998 6789999999875
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=6e-11 Score=99.60 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=43.6
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcC-CCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s-~~CP~CR~~lk 198 (199)
+..++..|+||++.+.+||..+|||+||..||..|+..+ .+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 445678999999999998888899999999999999864 45999999875
No 56
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.05 E-value=2.1e-11 Score=92.62 Aligned_cols=46 Identities=22% Similarity=0.599 Sum_probs=0.9
Q ss_pred CCCccccccccCcC------------------ceecCCCCcccHhhHHHHhhcCCCCcCcccCc
Q 029109 152 RNDECGICMENCTK------------------MVLPNCGHSLCVNCFHDWNARSQSCLFAVAAY 197 (199)
Q Consensus 152 ~e~eC~IClE~~~~------------------~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~l 197 (199)
.++.|+||++.... +++++|+|.||..||.+|+..+.+||+||.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 35689999965432 23346999999999999999999999999884
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.03 E-value=9.1e-11 Score=93.12 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=43.9
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcC-CCCcCcccCcc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 198 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s-~~CP~CR~~lk 198 (199)
+++++..|+||++...+++..+|||.||..||.+|+..+ ..||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 456788999999998888888899999999999999764 49999999875
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=78.48 Aligned_cols=44 Identities=25% Similarity=0.617 Sum_probs=38.3
Q ss_pred CCCCccccccccCcCceecCCCCc-ccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++.+|.||++...++++.+|||. ||..|+.. ...||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 456799999999988888779999 99999873 479999999886
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9.3e-11 Score=81.44 Aligned_cols=43 Identities=26% Similarity=0.627 Sum_probs=36.7
Q ss_pred CCccccccccCcCceecCCCCc-ccHhhHHHHhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
+.+|+||++...++++.+|||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4589999999888888779999 99999964 3789999998753
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=83.36 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCCCCccccccccCcCceec-CCCCcccHhhHHHHhhcC------CCCcC--cccC
Q 029109 150 LDRNDECGICMENCTKMVLP-NCGHSLCVNCFHDWNARS------QSCLF--AVAA 196 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~s------~~CP~--CR~~ 196 (199)
..++..|+||++.+.+||.. .|||+||..||..|+... .+||. |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35678999999999988876 599999999999999753 48999 9855
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.94 E-value=9.8e-10 Score=89.04 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=45.1
Q ss_pred ccCCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcC-CCCcCcccCcc
Q 029109 147 DKDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS-QSCLFAVAAYR 198 (199)
Q Consensus 147 ~~~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s-~~CP~CR~~lk 198 (199)
..++.++..||||++.+.+||..+|||+||..||..|+..+ .+||+||.++.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 34567789999999999998888899999999999999764 47999999874
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.6e-10 Score=79.56 Aligned_cols=47 Identities=23% Similarity=0.631 Sum_probs=37.2
Q ss_pred CCCCccccccccC---cCceecCCC-----CcccHhhHHHHhhcC--CCCcCcccCcc
Q 029109 151 DRNDECGICMENC---TKMVLPNCG-----HSLCVNCFHDWNARS--QSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~---~~~vlp~Cg-----H~FC~~Ci~~W~~~s--~~CP~CR~~lk 198 (199)
+++.+|.||++.. ...++| |+ |.||..||.+|+..+ .+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4567999999543 335555 96 999999999999875 49999998763
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.90 E-value=2.1e-10 Score=80.85 Aligned_cols=42 Identities=26% Similarity=0.553 Sum_probs=36.7
Q ss_pred CCccccccccCcCceecCCCCc-ccHhhHHHHhhcCCCCcCcccCcc
Q 029109 153 NDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~IClE~~~~~vlp~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+.+|+||++...++++.+|||. ||..|+..| ..||+||.++.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4689999999888887779998 999999877 38999999875
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3.7e-09 Score=73.99 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=37.8
Q ss_pred CCCccccccccCcC-ceecCCCCcccHhhHHHHhhcC--CCCcCcccCcc
Q 029109 152 RNDECGICMENCTK-MVLPNCGHSLCVNCFHDWNARS--QSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~~-~vlp~CgH~FC~~Ci~~W~~~s--~~CP~CR~~lk 198 (199)
.-.+|.||.+.... ..-+.|+|.||..||.+|++.+ .+||.||.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34699999976654 2234799999999999999877 79999998753
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.72 E-value=1.7e-09 Score=95.65 Aligned_cols=44 Identities=23% Similarity=0.681 Sum_probs=38.9
Q ss_pred CCCCccccccccCcCceecCCCCc-ccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHS-LCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~-FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+++..|+||++....+++.+|||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 456799999999988887679999 999999988 68999999886
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.3e-08 Score=86.92 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=40.8
Q ss_pred CCCCccccccccCcCcee-cCCCCcccHhhHHHHhhcC--CCCcC--cccCcc
Q 029109 151 DRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARS--QSCLF--AVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~s--~~CP~--CR~~lk 198 (199)
..+..||||++.+.+||. ..|||+||..||..|+..+ ..||. ||..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 456789999999999886 4799999999999998764 47999 998763
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=1.6e-08 Score=72.82 Aligned_cols=46 Identities=15% Similarity=0.455 Sum_probs=35.3
Q ss_pred CCCCccccccccCcCce---ecCCCCcccHhhHHHHhhc--------CCCCcC--cccC
Q 029109 151 DRNDECGICMENCTKMV---LPNCGHSLCVNCFHDWNAR--------SQSCLF--AVAA 196 (199)
Q Consensus 151 e~e~eC~IClE~~~~~v---lp~CgH~FC~~Ci~~W~~~--------s~~CP~--CR~~ 196 (199)
.++.+|+||++....++ +.+|||.||..|+.+++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34678999998765533 2369999999999998753 237999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.55 E-value=2.4e-08 Score=67.07 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=40.6
Q ss_pred CccccccccCcCceec-CCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 154 DECGICMENCTKMVLP-NCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~IClE~~~~~vlp-~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..|+||++...++|.. .+||.|+.+||.+|+..+.+||+.+.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999998888775 89999999999999988888999999875
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.53 E-value=2e-08 Score=88.75 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=36.6
Q ss_pred CCCCccccccccCcC-ce-------ecCCCCcccHhhHHHHhhcC-----------CCCcCcccCcc
Q 029109 151 DRNDECGICMENCTK-MV-------LPNCGHSLCVNCFHDWNARS-----------QSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~-~v-------lp~CgH~FC~~Ci~~W~~~s-----------~~CP~CR~~lk 198 (199)
+...+|+||++...+ .. .+.|+|.||..|+.+|+... .+||.||.+|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345689999965543 22 24799999999999999652 46999999863
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.40 E-value=2.3e-07 Score=62.10 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=36.0
Q ss_pred CCCCccccccccCcC-ceecCCC--C---cccHhhHHHHhhc--CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTK-MVLPNCG--H---SLCVNCFHDWNAR--SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~-~vlp~Cg--H---~FC~~Ci~~W~~~--s~~CP~CR~~lk 198 (199)
+++..|.||++.... .++| |. | .||..|+.+|+.. ..+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 566799999954333 4555 65 4 8999999999975 568999998864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.22 E-value=6.1e-07 Score=65.90 Aligned_cols=44 Identities=18% Similarity=0.439 Sum_probs=34.3
Q ss_pred ccccccccCcC--ceecCCCCcccHhhHHHHhhc-CCCCcCcccCccC
Q 029109 155 ECGICMENCTK--MVLPNCGHSLCVNCFHDWNAR-SQSCLFAVAAYRE 199 (199)
Q Consensus 155 eC~IClE~~~~--~vlp~CgH~FC~~Ci~~W~~~-s~~CP~CR~~lkr 199 (199)
-|++|--+... .+.| |.|+||.+|+..|.++ .+.||.|++++.|
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47788644433 4456 9999999999999865 5799999999864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.46 E-value=0.00012 Score=61.42 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=36.7
Q ss_pred CCccccccccCcCcee-cCCCCcccHhhHHHHhhcC--CCCcCcccCc
Q 029109 153 NDECGICMENCTKMVL-PNCGHSLCVNCFHDWNARS--QSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~s--~~CP~CR~~l 197 (199)
-.+|.||.+....-+. ++|+|.||..|+..|++.+ ..||.|+.+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 5689999987766443 5699999999999998764 4999998764
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.13 E-value=0.0022 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=26.0
Q ss_pred CCCcccccccc-CcCcee--cCCCCcccHhhHHH-Hh
Q 029109 152 RNDECGICMEN-CTKMVL--PNCGHSLCVNCFHD-WN 184 (199)
Q Consensus 152 ~e~eC~IClE~-~~~~vl--p~CgH~FC~~Ci~~-W~ 184 (199)
++..|+||.+. ..+++. ..|+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 35789999964 555664 56999999999998 54
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.40 E-value=0.053 Score=39.18 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=36.7
Q ss_pred CCCCccccccccCcCceecCC-CCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKMVLPNC-GHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~C-gH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
-....|-.|.-.....| . | .|.+|.+|+.-.+.++..||+|..+|.
T Consensus 26 ~G~~nCKsCWf~~k~LV-~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV-E-CNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCSSEE-E-CSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccCCee-e-ecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 34568999986555444 3 6 599999999999999999999987763
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.22 E-value=0.26 Score=48.65 Aligned_cols=51 Identities=6% Similarity=-0.059 Sum_probs=44.0
Q ss_pred cCCCCCCccccccccCcCceecCCC-CcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 148 KDLDRNDECGICMENCTKMVLPNCG-HSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~Cg-H~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.+..++..|||-.+...+||..+-| |++=...|.+|+..+.+||+=|.++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 4456788999999999888876687 59999999999998889999998875
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.10 E-value=0.5 Score=33.71 Aligned_cols=47 Identities=21% Similarity=0.615 Sum_probs=33.9
Q ss_pred CCccccccccCc-----C--ceecCCCCcccHhhHH-HHhhcCCCCcCcccCccC
Q 029109 153 NDECGICMENCT-----K--MVLPNCGHSLCVNCFH-DWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 153 e~eC~IClE~~~-----~--~vlp~CgH~FC~~Ci~-~W~~~s~~CP~CR~~lkr 199 (199)
...|.||=|..- . +.--.|+-..|..|++ +..+.++.||.|++..+|
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 468999975311 1 2224577789999999 455668899999998875
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=87.73 E-value=0.46 Score=31.72 Aligned_cols=46 Identities=13% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhcC----CCCcCcccC
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS----QSCLFAVAA 196 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s----~~CP~CR~~ 196 (199)
..+..|.||.+...-..=-.|...||..|+...+... =.||.|++.
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3456899998654322224588899999998766542 279999754
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.75 E-value=0.88 Score=29.63 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=31.6
Q ss_pred cCCCCCCccccccccCcCcee-cCCCCcccHhhHHHHhhc----CCCCcCccc
Q 029109 148 KDLDRNDECGICMENCTKMVL-PNCGHSLCVNCFHDWNAR----SQSCLFAVA 195 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vl-p~CgH~FC~~Ci~~W~~~----s~~CP~CR~ 195 (199)
.+...+..|.||.+.. .+++ -.|...||..|+..-+.. .=.||.|+.
T Consensus 6 ~~~~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQGG-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCCS-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCCC-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445677999998643 3332 457789999999864322 237999975
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.56 E-value=0.78 Score=29.88 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCCCccccccccCcCceecCCCCcccHhhHHHHhhc----CCCCcCcccCc
Q 029109 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAAY 197 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~----s~~CP~CR~~l 197 (199)
...+..|.||.+...-..=-.|...||..|+..-+.. .=.||.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999864332222457789999998743322 12699997653
No 80
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.91 E-value=0.34 Score=30.99 Aligned_cols=48 Identities=13% Similarity=0.296 Sum_probs=30.9
Q ss_pred cCCCCCCccccccccCcCceecCCCCcccHhhHHHHhhcC----CCCcCccc
Q 029109 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS----QSCLFAVA 195 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s----~~CP~CR~ 195 (199)
.+.+.+..|.||.+...-..=-.|...||..|+..-+... -.||.|+.
T Consensus 4 g~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3446678899998754322224677899999987433221 25998864
No 81
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.55 E-value=1.4 Score=30.86 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=27.0
Q ss_pred CCCCccccccccCcCceecCC----CCcccHhhHHHHhhc
Q 029109 151 DRNDECGICMENCTKMVLPNC----GHSLCVNCFHDWNAR 186 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~C----gH~FC~~Ci~~W~~~ 186 (199)
.....|.+|.|...+.-+..| .|.||..|-+...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345689999987776444446 699999999887754
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=78.36 E-value=2.6 Score=32.29 Aligned_cols=47 Identities=15% Similarity=0.392 Sum_probs=32.9
Q ss_pred CCCCCCccccccccCcCceecCCCCcccHhhHHHHhh---------c--CCCCcCccc
Q 029109 149 DLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNA---------R--SQSCLFAVA 195 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~---------~--s~~CP~CR~ 195 (199)
+...+..|.||.+.-.-..=-.|..+||..|+..=+. . .=.||.|+.
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999997655333346888999999995442 1 227999974
No 83
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.57 E-value=11 Score=27.80 Aligned_cols=32 Identities=22% Similarity=0.620 Sum_probs=22.0
Q ss_pred CCCCccccccccCcCce----ecCCCCcccHhhHHH
Q 029109 151 DRNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (199)
Q Consensus 151 e~e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~~ 182 (199)
.+-..|.+|...++... =..||+.||..|...
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 33458999987665321 136999999999653
No 84
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=75.32 E-value=0.34 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.901 Sum_probs=16.5
Q ss_pred CCCCcccHhhHHHHhhcCCCCc
Q 029109 170 NCGHSLCVNCFHDWNARSQSCL 191 (199)
Q Consensus 170 ~CgH~FC~~Ci~~W~~~s~~CP 191 (199)
.|+|.||..|-..|.. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 7999999999988865 5554
No 85
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.87 E-value=1.6 Score=28.55 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.8
Q ss_pred CccccccccCcC---ceecCCCCcccHhhHHHHhhcCCCCcCc
Q 029109 154 DECGICMENCTK---MVLPNCGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 154 ~eC~IClE~~~~---~vlp~CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
..|--|.....+ ..=|.|++.||.+|=.--.+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 358888855533 2248899999999944334445689988
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.13 E-value=5.1 Score=28.21 Aligned_cols=35 Identities=14% Similarity=0.479 Sum_probs=24.5
Q ss_pred CCCCCCccccccccCcCceec--CCCCcccHhhHHHH
Q 029109 149 DLDRNDECGICMENCTKMVLP--NCGHSLCVNCFHDW 183 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vlp--~CgH~FC~~Ci~~W 183 (199)
....|..|.||-.......+| -|+-+||..|+++-
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 345778999998433333333 26789999999986
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=70.79 E-value=1.2 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCCCccccccccCc--Ccee-cCCCCcccHhhHHHHhhc----CCCCcCcccCcc
Q 029109 151 DRNDECGICMENCT--KMVL-PNCGHSLCVNCFHDWNAR----SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~--~~vl-p~CgH~FC~~Ci~~W~~~----s~~CP~CR~~lk 198 (199)
++...|+||-.... .+|. -.|.-.||..|+..-... .-.||.|+..++
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34457999985432 2333 457789999998643322 237999987654
No 88
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.09 E-value=7.1 Score=29.37 Aligned_cols=49 Identities=14% Similarity=0.379 Sum_probs=32.6
Q ss_pred cCCCCCCccccccccCcCceecCCCCcccHhhHHHHh------h----c-CCCCcCcccC
Q 029109 148 KDLDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWN------A----R-SQSCLFAVAA 196 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~------~----~-s~~CP~CR~~ 196 (199)
.+...+..|.||-+.-.-..=-.|-.+||..|+..-+ + . .=.|+.|+.+
T Consensus 52 d~Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3445677899999764422224688999999998631 1 1 1379999653
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.76 E-value=1.4 Score=29.00 Aligned_cols=45 Identities=16% Similarity=0.445 Sum_probs=29.3
Q ss_pred CCCCccccccccCcCceecCCCCcccHhhHHHHhhc----CCCCcCccc
Q 029109 151 DRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVA 195 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~----s~~CP~CR~ 195 (199)
..+..|.||.+...-..=-.|...||..|+..-+.. .=.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 457799999965432222467789999998743322 126999954
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.26 E-value=5 Score=24.64 Aligned_cols=41 Identities=17% Similarity=0.480 Sum_probs=26.0
Q ss_pred ccccccccC--cCcee-cCCCCcccHhhHHHHhhc----CCCCcCccc
Q 029109 155 ECGICMENC--TKMVL-PNCGHSLCVNCFHDWNAR----SQSCLFAVA 195 (199)
Q Consensus 155 eC~IClE~~--~~~vl-p~CgH~FC~~Ci~~W~~~----s~~CP~CR~ 195 (199)
.|.||.... ..+++ -.|...||..|+..=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588887433 23332 457889999998643222 126999975
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.18 E-value=3.9 Score=28.82 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCCCCccccccccCcCceecCCCCcccHhhHHHHhhcC----CCCcCcccC
Q 029109 150 LDRNDECGICMENCTKMVLPNCGHSLCVNCFHDWNARS----QSCLFAVAA 196 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~s----~~CP~CR~~ 196 (199)
.+.+..|.+|.+...-..=..|.-.||..|+..=+... -.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 35567999999654322224567789999986544331 269999743
No 92
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=61.00 E-value=15 Score=27.55 Aligned_cols=30 Identities=27% Similarity=0.680 Sum_probs=21.6
Q ss_pred CCCCccccccccCc-----CceecCCCCcccHhhH
Q 029109 151 DRNDECGICMENCT-----KMVLPNCGHSLCVNCF 180 (199)
Q Consensus 151 e~e~eC~IClE~~~-----~~vlp~CgH~FC~~Ci 180 (199)
..+..|.+|...+. ..+=..|.|.+|.+|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 46789999996552 1233568999999994
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=58.19 E-value=3.9 Score=29.34 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=24.9
Q ss_pred CCCCccccccccCc--Ccee-cCCCCcccHhhHHHHhh
Q 029109 151 DRNDECGICMENCT--KMVL-PNCGHSLCVNCFHDWNA 185 (199)
Q Consensus 151 e~e~eC~IClE~~~--~~vl-p~CgH~FC~~Ci~~W~~ 185 (199)
.++..|.||.+... +.+. ..|+..||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 56789999985433 2232 56899999999876543
No 94
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=57.89 E-value=11 Score=29.29 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=27.6
Q ss_pred cCCCCCCccccccccCcCcee--cCCCCcccHhhHHHHhhc
Q 029109 148 KDLDRNDECGICMENCTKMVL--PNCGHSLCVNCFHDWNAR 186 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vl--p~CgH~FC~~Ci~~W~~~ 186 (199)
.+...+..|.||-+...-..= ++|...||..||..++..
T Consensus 74 DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 444567899999876532221 368899999999988743
No 95
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.25 E-value=9.2 Score=25.52 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCCCccccccccC-cCcee-cC--CC-CcccHhhHHHHhhc----CCCCcCcccCcc
Q 029109 151 DRNDECGICMENC-TKMVL-PN--CG-HSLCVNCFHDWNAR----SQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~-~~~vl-p~--Cg-H~FC~~Ci~~W~~~----s~~CP~CR~~lk 198 (199)
.++..| ||.... ..+|. -+ |. ..||..|+. +.. .-.||.|+..-+
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 344567 898643 23442 23 65 689999986 222 237999987654
No 96
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.24 E-value=2.6 Score=30.83 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=15.1
Q ss_pred cCCCCcccHhhHHHHhhcCCCCcCcccC
Q 029109 169 PNCGHSLCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
-+||+.|. +-......||.|++.
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCC
Confidence 36999992 112345689999864
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=55.47 E-value=2.5 Score=27.16 Aligned_cols=45 Identities=13% Similarity=0.336 Sum_probs=28.8
Q ss_pred CCCccccccccCcCceecCCCCcccHhhHHHHhhc----CCCCcCcccC
Q 029109 152 RNDECGICMENCTKMVLPNCGHSLCVNCFHDWNAR----SQSCLFAVAA 196 (199)
Q Consensus 152 ~e~eC~IClE~~~~~vlp~CgH~FC~~Ci~~W~~~----s~~CP~CR~~ 196 (199)
.+..|.||.....-..=-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999865322222467889999998743322 1269988643
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.93 E-value=1.7 Score=30.72 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCCCCCccccccccCc--Ccee-cCCCCcccHhhHHHHhhc----CCCCcCccc
Q 029109 149 DLDRNDECGICMENCT--KMVL-PNCGHSLCVNCFHDWNAR----SQSCLFAVA 195 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~--~~vl-p~CgH~FC~~Ci~~W~~~----s~~CP~CR~ 195 (199)
+..++..|.||..... .+++ -.|...||..|+..=+.. .=.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3455678999985432 2332 457788999997632221 125999864
No 99
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=54.13 E-value=1.1 Score=31.05 Aligned_cols=20 Identities=30% Similarity=1.014 Sum_probs=15.7
Q ss_pred ceecCCCCcccHhhHHHHhh
Q 029109 166 MVLPNCGHSLCVNCFHDWNA 185 (199)
Q Consensus 166 ~vlp~CgH~FC~~Ci~~W~~ 185 (199)
+.=|.|+|.||..|-..|-+
T Consensus 44 v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp EECTTTCCEECSSSCSBCCT
T ss_pred eEeCCCCCccccccCCchhh
Confidence 33467999999999988833
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.68 E-value=5.2 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=26.7
Q ss_pred CCCccccccccCc-Ccee-cC--CC-CcccHhhHHHHhhc----CCCCcCcccCcc
Q 029109 152 RNDECGICMENCT-KMVL-PN--CG-HSLCVNCFHDWNAR----SQSCLFAVAAYR 198 (199)
Q Consensus 152 ~e~eC~IClE~~~-~~vl-p~--Cg-H~FC~~Ci~~W~~~----s~~CP~CR~~lk 198 (199)
++..| ||..... .+|. -+ |. ..||..|+. +.. .-.||.|+..-+
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34456 9986432 3332 23 55 589999986 222 237999987654
No 101
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.55 E-value=8.3 Score=25.82 Aligned_cols=33 Identities=30% Similarity=0.680 Sum_probs=24.5
Q ss_pred CCCCccccccccCcCceecCC-CCcccHhhHHHHh
Q 029109 151 DRNDECGICMENCTKMVLPNC-GHSLCVNCFHDWN 184 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp~C-gH~FC~~Ci~~W~ 184 (199)
++..-|.||.|-.+-.- .+| +-.||..|+.+-.
T Consensus 6 ee~pWC~ICneDAtlrC-~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDATLRC-AGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCCEEE-TTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCeEEe-cCCCCceehHHHHHHHc
Confidence 44567999998866444 458 6799999988654
No 102
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.43 E-value=24 Score=27.03 Aligned_cols=30 Identities=17% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCCCccccccccC-----cCceecCCCCcccHhhH
Q 029109 151 DRNDECGICMENC-----TKMVLPNCGHSLCVNCF 180 (199)
Q Consensus 151 e~e~eC~IClE~~-----~~~vlp~CgH~FC~~Ci 180 (199)
..+..|.+|...+ ...+=.+|.|.+|.+|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 3578999999653 22333679999999995
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.41 E-value=12 Score=25.41 Aligned_cols=32 Identities=28% Similarity=0.696 Sum_probs=22.3
Q ss_pred CCCCccccccccCcCce----ecCCCCcccHhhHHH
Q 029109 151 DRNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (199)
Q Consensus 151 e~e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~~ 182 (199)
++...|.+|...++... =..||+.||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44468999987665321 146999999999653
No 104
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.37 E-value=12 Score=25.46 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCCCCccccccccCcCce----ecCCCCcccHhhHHH
Q 029109 150 LDRNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~~ 182 (199)
..+...|.+|...++... =-.||+.||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 344568999987665321 136999999999654
No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.20 E-value=5.8 Score=27.00 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=26.1
Q ss_pred Ccccccccc--CcCcee-cCCCCcccHhhHHHHhhc-----CCCCcCccc
Q 029109 154 DECGICMEN--CTKMVL-PNCGHSLCVNCFHDWNAR-----SQSCLFAVA 195 (199)
Q Consensus 154 ~eC~IClE~--~~~~vl-p~CgH~FC~~Ci~~W~~~-----s~~CP~CR~ 195 (199)
..|.||... ....++ -.|...||..|+..=+.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 478888743 333333 457789999998732221 126999974
No 106
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=45.88 E-value=22 Score=31.46 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=32.3
Q ss_pred CCCCCCccccccccCcCcee--cCCCCcccHhhHHHHhhc---------C-CCCcCccc
Q 029109 149 DLDRNDECGICMENCTKMVL--PNCGHSLCVNCFHDWNAR---------S-QSCLFAVA 195 (199)
Q Consensus 149 ~~e~e~eC~IClE~~~~~vl--p~CgH~FC~~Ci~~W~~~---------s-~~CP~CR~ 195 (199)
+...+..|.||-+...-..= ++|...||..||...+.+ . =.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34567899999876532221 378999999999988732 1 26877753
No 107
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.36 E-value=4.4 Score=26.27 Aligned_cols=33 Identities=30% Similarity=0.765 Sum_probs=21.6
Q ss_pred CccccccccC------cCceecC--CCCcccHhhHHHHhhc
Q 029109 154 DECGICMENC------TKMVLPN--CGHSLCVNCFHDWNAR 186 (199)
Q Consensus 154 ~eC~IClE~~------~~~vlp~--CgH~FC~~Ci~~W~~~ 186 (199)
..||-|.-+. ..+.-+. |+|.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4677776322 2244344 8899999998888754
No 108
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.03 E-value=1.9 Score=30.10 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=28.9
Q ss_pred CCCccccccccC----cCcee-cCCCCcccHhhHHHHhh-----c---CCCCcCcccC
Q 029109 152 RNDECGICMENC----TKMVL-PNCGHSLCVNCFHDWNA-----R---SQSCLFAVAA 196 (199)
Q Consensus 152 ~e~eC~IClE~~----~~~vl-p~CgH~FC~~Ci~~W~~-----~---s~~CP~CR~~ 196 (199)
.+..|.||.... ...++ -.|...||..|+..=+. . .=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 456899998653 22333 45778999999874332 1 2269998654
No 109
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.89 E-value=6.6 Score=26.12 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=24.8
Q ss_pred cccccccc--CcCcee-cCCCCcccHhhHHHHhhc-----CCCCcCcccC
Q 029109 155 ECGICMEN--CTKMVL-PNCGHSLCVNCFHDWNAR-----SQSCLFAVAA 196 (199)
Q Consensus 155 eC~IClE~--~~~~vl-p~CgH~FC~~Ci~~W~~~-----s~~CP~CR~~ 196 (199)
.|.||... ...+++ -.|...||..|+..=+.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 45677632 223332 357789999998732221 1269999753
No 110
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.20 E-value=15 Score=24.32 Aligned_cols=28 Identities=25% Similarity=0.605 Sum_probs=20.3
Q ss_pred CccccccccCcCce----ecCCCCcccHhhHH
Q 029109 154 DECGICMENCTKMV----LPNCGHSLCVNCFH 181 (199)
Q Consensus 154 ~eC~IClE~~~~~v----lp~CgH~FC~~Ci~ 181 (199)
..|.+|...++... =..||+.||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 58999987665321 13699999999964
No 111
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.75 E-value=15 Score=25.05 Aligned_cols=32 Identities=25% Similarity=0.659 Sum_probs=21.9
Q ss_pred CCCCCccccccccCcCce----ecCCCCcccHhhHH
Q 029109 150 LDRNDECGICMENCTKMV----LPNCGHSLCVNCFH 181 (199)
Q Consensus 150 ~e~e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~ 181 (199)
.++-..|.+|...++... =-.||+.||..|..
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 344468999987664321 13699999999954
No 112
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.72 E-value=43 Score=23.81 Aligned_cols=31 Identities=19% Similarity=0.604 Sum_probs=20.7
Q ss_pred CCCCccccccccC--------cCcee-cCCCCcccHhhHH
Q 029109 151 DRNDECGICMENC--------TKMVL-PNCGHSLCVNCFH 181 (199)
Q Consensus 151 e~e~eC~IClE~~--------~~~vl-p~CgH~FC~~Ci~ 181 (199)
+....|.+|.... .+.+. .+|+..||..|+.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3456899998431 12222 4689999999985
No 113
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=39.61 E-value=12 Score=24.06 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=30.1
Q ss_pred CCCCccccccccC----cCcee-cCCCCcccHhhHHHHhh-------cCCCCcCcccC
Q 029109 151 DRNDECGICMENC----TKMVL-PNCGHSLCVNCFHDWNA-------RSQSCLFAVAA 196 (199)
Q Consensus 151 e~e~eC~IClE~~----~~~vl-p~CgH~FC~~Ci~~W~~-------~s~~CP~CR~~ 196 (199)
.++..|.||.... ...++ ..|.-.||..|+..=+. ..=.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 5667999998652 23333 56788999999874221 12369998653
No 114
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.59 E-value=10 Score=27.43 Aligned_cols=12 Identities=33% Similarity=1.204 Sum_probs=10.4
Q ss_pred cccHhhHHHHhh
Q 029109 174 SLCVNCFHDWNA 185 (199)
Q Consensus 174 ~FC~~Ci~~W~~ 185 (199)
-||.+|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999974
No 115
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=39.38 E-value=10 Score=27.35 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=10.4
Q ss_pred cccHhhHHHHhh
Q 029109 174 SLCVNCFHDWNA 185 (199)
Q Consensus 174 ~FC~~Ci~~W~~ 185 (199)
-||.+|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999974
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=38.00 E-value=9.2 Score=31.48 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=23.3
Q ss_pred Ccccccccc--CcCcee-cCCCCcccHhhHHHHhhc--C---CCCcCccc
Q 029109 154 DECGICMEN--CTKMVL-PNCGHSLCVNCFHDWNAR--S---QSCLFAVA 195 (199)
Q Consensus 154 ~eC~IClE~--~~~~vl-p~CgH~FC~~Ci~~W~~~--s---~~CP~CR~ 195 (199)
..|.+|... ....++ -.|...||..|+..=+.. . =.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 358888743 223332 457889999998743222 1 25999975
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.97 E-value=21 Score=24.68 Aligned_cols=32 Identities=25% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCCCccccccccCcCce----ecCCCCcccHhhHHH
Q 029109 151 DRNDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (199)
Q Consensus 151 e~e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~~ 182 (199)
++...|.+|...++... =..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34458999986655321 136899999999643
No 118
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=36.60 E-value=19 Score=26.07 Aligned_cols=44 Identities=16% Similarity=0.402 Sum_probs=27.5
Q ss_pred cCCCCCCccccccccCcCceec---CCCCcccHhhHHHHhhcC----CCCcCcc
Q 029109 148 KDLDRNDECGICMENCTKMVLP---NCGHSLCVNCFHDWNARS----QSCLFAV 194 (199)
Q Consensus 148 ~~~e~e~eC~IClE~~~~~vlp---~CgH~FC~~Ci~~W~~~s----~~CP~CR 194 (199)
.+.+.+..|.+|.+.. ++++= .|...||..|+. +... =.||.|+
T Consensus 10 ~~~~~~~~C~~C~~~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCCS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCCC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 3345677899998543 34432 477899999986 3221 2577664
No 119
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.19 E-value=17 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=21.8
Q ss_pred CCccccccccCcCce----ecCCCCcccHhhHHH
Q 029109 153 NDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (199)
Q Consensus 153 e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~~ 182 (199)
+..|.+|...++... =..||+.||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 468999986665321 246999999999654
No 120
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.30 E-value=13 Score=23.82 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=29.1
Q ss_pred CCCCccccccccC---cCcee-cCCCCcccHhhHHHHhh-----cCCCCcCcccC
Q 029109 151 DRNDECGICMENC---TKMVL-PNCGHSLCVNCFHDWNA-----RSQSCLFAVAA 196 (199)
Q Consensus 151 e~e~eC~IClE~~---~~~vl-p~CgH~FC~~Ci~~W~~-----~s~~CP~CR~~ 196 (199)
+++..|+||.... ..+|- -.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4566899998543 22332 34778899999753211 23479999764
No 121
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.77 E-value=37 Score=22.44 Aligned_cols=46 Identities=17% Similarity=0.463 Sum_probs=29.5
Q ss_pred CCCCCccccccccC----cCcee-cCCCCcccHhhHHHHhhc--CCCCcCccc
Q 029109 150 LDRNDECGICMENC----TKMVL-PNCGHSLCVNCFHDWNAR--SQSCLFAVA 195 (199)
Q Consensus 150 ~e~e~eC~IClE~~----~~~vl-p~CgH~FC~~Ci~~W~~~--s~~CP~CR~ 195 (199)
..++..|.||.+.. ...++ -.|.-.||..|+..-... .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35677999998553 23333 467789999998632211 226888864
No 122
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.67 E-value=39 Score=29.58 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=28.1
Q ss_pred CCccccccccCcCc-eecCCCCc--ccHhhHHHHhhc--CCCCcCcccCc
Q 029109 153 NDECGICMENCTKM-VLPNCGHS--LCVNCFHDWNAR--SQSCLFAVAAY 197 (199)
Q Consensus 153 e~eC~IClE~~~~~-vlp~CgH~--FC~~Ci~~W~~~--s~~CP~CR~~l 197 (199)
...|||-......| --..|.|. |-..=+.+...+ .-.||+|...+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCccc
Confidence 34799877544443 34679997 444444444443 34899998765
No 123
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.97 E-value=18 Score=28.85 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCccccccccCcCce----ecCCCCcccHhhHHH
Q 029109 153 NDECGICMENCTKMV----LPNCGHSLCVNCFHD 182 (199)
Q Consensus 153 e~eC~IClE~~~~~v----lp~CgH~FC~~Ci~~ 182 (199)
+..|.+|...++-.. =..||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 469999987665311 146999999999653
No 124
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=31.84 E-value=34 Score=23.53 Aligned_cols=47 Identities=17% Similarity=0.461 Sum_probs=29.7
Q ss_pred CCCCCccccccccC----cCcee-cCCCCcccHhhHHHHhhc--CCCCcCcccC
Q 029109 150 LDRNDECGICMENC----TKMVL-PNCGHSLCVNCFHDWNAR--SQSCLFAVAA 196 (199)
Q Consensus 150 ~e~e~eC~IClE~~----~~~vl-p~CgH~FC~~Ci~~W~~~--s~~CP~CR~~ 196 (199)
.+++..|.||.+.. ...++ -.|.-.||..|+..-... .=.||.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 35678999999653 12322 457778999998632211 2269988643
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=31.34 E-value=24 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCCccccccccCcC----ceecCCCCcccHhhHHHH
Q 029109 152 RNDECGICMENCTK----MVLPNCGHSLCVNCFHDW 183 (199)
Q Consensus 152 ~e~eC~IClE~~~~----~vlp~CgH~FC~~Ci~~W 183 (199)
+...|.+|...+.. --=..||+.||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 34579999866542 112479999999996543
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=30.76 E-value=39 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=27.2
Q ss_pred CccccccccCcC-ceecCCCCc--ccHhhHHHHhhc--CCCCcCcccCc
Q 029109 154 DECGICMENCTK-MVLPNCGHS--LCVNCFHDWNAR--SQSCLFAVAAY 197 (199)
Q Consensus 154 ~eC~IClE~~~~-~vlp~CgH~--FC~~Ci~~W~~~--s~~CP~CR~~l 197 (199)
..|||-...... .--..|.|. |-..=+.+...+ .-.||+|...+
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 579987754444 334679997 444334444433 34899998765
No 127
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=30.48 E-value=11 Score=24.10 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCCccccccccCc-Ccee-cC--CC-CcccHhhHHHHhhc----CCCCcCccc
Q 029109 152 RNDECGICMENCT-KMVL-PN--CG-HSLCVNCFHDWNAR----SQSCLFAVA 195 (199)
Q Consensus 152 ~e~eC~IClE~~~-~~vl-p~--Cg-H~FC~~Ci~~W~~~----s~~CP~CR~ 195 (199)
+..-| ||..... .+|. -+ |. ..||..|+. +.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34455 9985432 3333 23 55 579999986 222 237999964
No 128
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.15 E-value=3.2 Score=28.94 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=17.4
Q ss_pred Ccccccc-ccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 154 DECGICM-ENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 154 ~eC~ICl-E~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
..||.|. ++.++. ++..|..|-.+... ..-||-|.+++.
T Consensus 3 ~~CP~C~~~l~~~~-----~~~~C~~C~~~~~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNG-----DTAHCETCAKDFSL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECS-----SEEECTTTCCEEEE-EEECSSSCSCCC
T ss_pred CCCCCCCCccccCC-----CceECccccccCCC-cccCcchhhHHH
Confidence 4677776 322211 13335555332222 125666666553
No 129
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.75 E-value=5.5 Score=34.22 Aligned_cols=46 Identities=15% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCCCccccccccCcCceec----CCC--CcccHhhHHHHhhcCCCCcCcccC
Q 029109 151 DRNDECGICMENCTKMVLP----NCG--HSLCVNCFHDWNARSQSCLFAVAA 196 (199)
Q Consensus 151 e~e~eC~IClE~~~~~vlp----~Cg--H~FC~~Ci~~W~~~s~~CP~CR~~ 196 (199)
.....||+|=....-.++. .=| |..|.-|-.+|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5568999997544332221 123 578999999999888899999653
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=26.47 E-value=16 Score=23.41 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCCCccccccccCc-Ccee-cC--CC-CcccHhhHHHHhhc----CCCCcCccc
Q 029109 151 DRNDECGICMENCT-KMVL-PN--CG-HSLCVNCFHDWNAR----SQSCLFAVA 195 (199)
Q Consensus 151 e~e~eC~IClE~~~-~~vl-p~--Cg-H~FC~~Ci~~W~~~----s~~CP~CR~ 195 (199)
.++.-| ||..... .+|. -+ |. ..||..|+. +.. .-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 334456 9986432 3443 23 66 689999986 222 237999965
No 131
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.32 E-value=4.2 Score=29.34 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=25.7
Q ss_pred CCcccccc-ccCcCceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 153 NDECGICM-ENCTKMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 153 e~eC~ICl-E~~~~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
+..||+|. |+.+. =++.+|..|-.+. .....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~~-----g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-----NGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE-----TTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred cccCccCCCcceec-----CCEEECccccchh-hccccCcchhhHHH
Confidence 37999998 44332 1345588884332 23467999998875
No 132
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=25.94 E-value=14 Score=28.11 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=14.8
Q ss_pred cCCCCcccHhhHHHHhhcCCCCcCcccCccC
Q 029109 169 PNCGHSLCVNCFHDWNARSQSCLFAVAAYRE 199 (199)
Q Consensus 169 p~CgH~FC~~Ci~~W~~~s~~CP~CR~~lkr 199 (199)
+.|||.|=.. .....||.|-.+++|
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKVKL 160 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBEEE
T ss_pred CCCCCcccCC------CCCCcCCCCCCccee
Confidence 4577766321 223479999877654
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.79 E-value=9.4 Score=28.28 Aligned_cols=42 Identities=17% Similarity=0.521 Sum_probs=24.2
Q ss_pred CCCccccccccCcCc----eecCCCCcccHhhHHHHhhcCCCCcCc
Q 029109 152 RNDECGICMENCTKM----VLPNCGHSLCVNCFHDWNARSQSCLFA 193 (199)
Q Consensus 152 ~e~eC~IClE~~~~~----vlp~CgH~FC~~Ci~~W~~~s~~CP~C 193 (199)
....|..|-..++.. -=.+||..||..|..........|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 345899998766531 124699999999954433223445544
No 134
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.95 E-value=46 Score=23.78 Aligned_cols=29 Identities=24% Similarity=0.646 Sum_probs=18.9
Q ss_pred CccccccccC---------cCcee-cCCCCcccHhhHHH
Q 029109 154 DECGICMENC---------TKMVL-PNCGHSLCVNCFHD 182 (199)
Q Consensus 154 ~eC~IClE~~---------~~~vl-p~CgH~FC~~Ci~~ 182 (199)
..|.||.... .+.+. ..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 3688898432 12222 46889999999864
No 135
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.99 E-value=56 Score=23.23 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=29.6
Q ss_pred ccccccccCc---CceecCCCCcccHhhHHHHhhcCCCCcCcccCcc
Q 029109 155 ECGICMENCT---KMVLPNCGHSLCVNCFHDWNARSQSCLFAVAAYR 198 (199)
Q Consensus 155 eC~IClE~~~---~~vlp~CgH~FC~~Ci~~W~~~s~~CP~CR~~lk 198 (199)
.|..|-.... ......=+..+|..|+.+-+.....|-.|..+|.
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 5777765543 1122334678999999887665558999988774
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.87 E-value=18 Score=31.40 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCccccccccCcCc----eecCCCCcccHhhHHHHhh-------cCCCCcCcccCcc
Q 029109 151 DRNDECGICMENCTKM----VLPNCGHSLCVNCFHDWNA-------RSQSCLFAVAAYR 198 (199)
Q Consensus 151 e~e~eC~IClE~~~~~----vlp~CgH~FC~~Ci~~W~~-------~s~~CP~CR~~lk 198 (199)
.+...|.+|...++.. -=..||+.||..|-..... ....|-.|-..+.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 3446899998655421 1236999999999875431 1356888866554
No 137
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=22.87 E-value=17 Score=24.61 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=23.8
Q ss_pred ccccccccCcC-cee--cCCCCcccHhhHHHHhhc----C-CCCcCccc
Q 029109 155 ECGICMENCTK-MVL--PNCGHSLCVNCFHDWNAR----S-QSCLFAVA 195 (199)
Q Consensus 155 eC~IClE~~~~-~vl--p~CgH~FC~~Ci~~W~~~----s-~~CP~CR~ 195 (199)
.|.||...... .++ -.|...||..|+..-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45566543322 222 357789999998743322 1 26999975
No 138
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.30 E-value=25 Score=20.28 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=4.1
Q ss_pred Ccccccc
Q 029109 154 DECGICM 160 (199)
Q Consensus 154 ~eC~ICl 160 (199)
..|||||
T Consensus 6 FiCP~C~ 12 (34)
T 3mjh_B 6 FICPQCM 12 (34)
T ss_dssp EECTTTC
T ss_pred cCCcHHH
Confidence 4566665
Done!