BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029110
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LP37|RK34_ARATH 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana
GN=RPL34 PE=2 SV=1
Length = 157
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 94/129 (72%), Gaps = 8/129 (6%)
Query: 26 IPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSGLSLGLDFN 85
+PSASL LRTG + + +S + LLHCSF+SS + + S FSGLS+ D +
Sbjct: 28 VPSASLSLRTG----CRRSSSSLTSSASSQLLHCSFLSSPV---SLASPFSGLSIAFDLS 80
Query: 86 SN-AGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAK 144
S +G+ ++R+GLVVRAGKAALCQTKR+RSRKSLARTHGFRRRMRTTSGRA +KRRRAK
Sbjct: 81 SQTSGLNGQRRRGLVVRAGKAALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAK 140
Query: 145 GRDQVVEIS 153
GR + S
Sbjct: 141 GRWNLCPKS 149
>sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea
GN=RPL34 PE=1 SV=1
Length = 152
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 97/146 (66%), Gaps = 11/146 (7%)
Query: 1 MASLSITTSIPPPWLTSKSTHHSRRIPSASLILRTGRSSVSVNVAGNNSSPSRPGLLHCS 60
MA+LS+ ++ +T+ R PSASL TG + + V+ N S +R G LHCS
Sbjct: 1 MATLSLLSTGVGAAITN-------RTPSASLTFITGSRTTNKRVSFNGGS-ARSGSLHCS 52
Query: 61 FVSSSLCSSAFHSAFSGLSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLA 120
F++ S S+ S LSLGLD SN GV ++ + VVRAGKAALC TKR+RSRKSLA
Sbjct: 53 FLAPSSSLSSNFSG---LSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLA 109
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGR 146
RTHGFR RM TTSGRA+LKRRRAKGR
Sbjct: 110 RTHGFRLRMSTTSGRALLKRRRAKGR 135
>sp|Q9RSH2|RL34_DEIRA 50S ribosomal protein L34 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=rpmH PE=1 SV=1
Length = 47
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Query: 113 NRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
NR R A+THGFR RM+T SGR IL RRRAKGR Q+
Sbjct: 9 NRKR---AKTHGFRARMKTKSGRNILARRRAKGRHQLT 43
>sp|C1CZV9|RL34_DEIDV 50S ribosomal protein L34 OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=rpmH PE=3 SV=1
Length = 47
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
A+THGFR RM+T SGR IL RRRAKGR Q+
Sbjct: 13 AKTHGFRARMKTKSGRNILARRRAKGRHQLT 43
>sp|Q7X5L3|RL34_THEFI 50S ribosomal protein L34 OS=Thermus filiformis GN=rpmH PE=3 SV=1
Length = 44
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
+R+ A+THGFR RM+T SGR +LKRRR KGR ++
Sbjct: 8 NRRKRAKTHGFRARMKTKSGRKVLKRRRQKGRHRLT 43
>sp|Q3J6L6|RL34_NITOC 50S ribosomal protein L34 OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
RTHGFR RMRT GRAI+ RRRAKGR ++
Sbjct: 14 RTHGFRARMRTQGGRAIINRRRAKGRKRLT 43
>sp|Q7X5K9|RL34_THESC 50S ribosomal protein L34 OS=Thermus scotoductus GN=rpmH PE=3 SV=1
Length = 48
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
+R+ A+THGFR RMRT GR +LKRRR KGR
Sbjct: 8 NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGR 39
>sp|P0A162|RL34_PSEPU 50S ribosomal protein L34 OS=Pseudomonas putida GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|P0A161|RL34_PSEPK 50S ribosomal protein L34 OS=Pseudomonas putida (strain KT2440)
GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|B0KEU8|RL34_PSEPG 50S ribosomal protein L34 OS=Pseudomonas putida (strain GB-1)
GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q1I2H1|RL34_PSEE4 50S ribosomal protein L34 OS=Pseudomonas entomophila (strain L48)
GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q4ZL08|RL34_PSEU2 50S ribosomal protein L34 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q87TR8|RL34_PSESM 50S ribosomal protein L34 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|Q48BE9|RL34_PSE14 50S ribosomal protein L34 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLA 43
>sp|A4Y1A3|RL34_PSEMY 50S ribosomal protein L34 OS=Pseudomonas mendocina (strain ymp)
GN=rpmH PE=3 SV=1
Length = 44
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRLT 43
>sp|P80340|RL34_THET8 50S ribosomal protein L34 OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=rpmH PE=1 SV=3
Length = 49
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
+R+ A+THGFR RMRT GR +LKRRR KGR
Sbjct: 8 NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGR 39
>sp|Q7X5L1|RL34_THEOS 50S ribosomal protein L34 OS=Thermus oshimai GN=rpmH PE=3 SV=1
Length = 48
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
+R+ A+THGFR RMRT GR +LKRRR KGR
Sbjct: 8 NRRKRAKTHGFRARMRTPGGRKVLKRRRQKGR 39
>sp|Q6ABV3|RL34_LEIXX 50S ribosomal protein L34 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpmH PE=3 SV=1
Length = 45
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
A+THGFR RMRT +GRAIL RRAKGR ++
Sbjct: 14 AKTHGFRLRMRTRAGRAILSARRAKGRQKL 43
>sp|B5EJJ2|RL34_ACIF5 50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
RTHGFR RM T SGR +LKRRRAKGR ++
Sbjct: 14 RTHGFRARMATKSGRLVLKRRRAKGRQRL 42
>sp|B7J3D6|RL34_ACIF2 50S ribosomal protein L34 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
RTHGFR RM T SGR +LKRRRAKGR ++
Sbjct: 14 RTHGFRARMATKSGRLVLKRRRAKGRQRL 42
>sp|C3K1G4|RL34_PSEFS 50S ribosomal protein L34 OS=Pseudomonas fluorescens (strain SBW25)
GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRARLA 43
>sp|Q4K394|RL34_PSEF5 50S ribosomal protein L34 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=rpmH PE=3 SV=1
Length = 44
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRARLA 43
>sp|Q7X5L7|RL34_THEBO 50S ribosomal protein L34 OS=Thermus brockianus GN=rpmH PE=3 SV=1
Length = 48
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGR 146
+R+ A+THGFR RM+T GR +LKRRR KGR
Sbjct: 8 NRRKRAKTHGFRARMKTPGGRKVLKRRRQKGR 39
>sp|A8L8W3|RL34_FRASN 50S ribosomal protein L34 OS=Frankia sp. (strain EAN1pec) GN=rpmH
PE=3 SV=1
Length = 45
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RMRT +GR+IL RR+KGR Q+
Sbjct: 14 ARTHGFRLRMRTRAGRSILSARRSKGRSQL 43
>sp|A8EY60|RL34_RICCK 50S ribosomal protein L34 OS=Rickettsia canadensis (strain McKiel)
GN=rpmH PE=3 SV=1
Length = 44
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
R HGFR RM T SGRAIL+RRRAKGR ++
Sbjct: 14 RRHGFRARMATPSGRAILRRRRAKGRHKL 42
>sp|Q0C551|RL34_HYPNA 50S ribosomal protein L34 OS=Hyphomonas neptunium (strain ATCC
15444) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GR +L RRRAKGR +
Sbjct: 13 ARTHGFRERMSTKNGRKVLARRRAKGRKTLT 43
>sp|P25820|RL34_STRBI 50S ribosomal protein L34 OS=Streptomyces bikiniensis GN=rpmH PE=3
SV=1
Length = 45
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGR 146
A+THGFR RMRT +GRAIL RRAKGR
Sbjct: 14 AKTHGFRLRMRTRAGRAILANRRAKGR 40
>sp|Q7VQV0|RL34_BLOFL 50S ribosomal protein L34 OS=Blochmannia floridanus GN=rpmH PE=3
SV=1
Length = 46
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
RTHGFR RM T +GR IL RRRAKGR +++
Sbjct: 14 RTHGFRLRMSTQNGRQILSRRRAKGRIRLI 43
>sp|Q68WC9|RL34_RICTY 50S ribosomal protein L34 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
R HGFR RM T +GRAILK+RRAKGR ++
Sbjct: 14 RRHGFRSRMITVTGRAILKKRRAKGRHKL 42
>sp|A8GP90|RL34_RICAH 50S ribosomal protein L34 OS=Rickettsia akari (strain Hartford)
GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
R HGFR RM T +GRAILK+RRAKGR ++
Sbjct: 14 RRHGFRARMATPTGRAILKKRRAKGRHKL 42
>sp|C1DNG0|RL34_AZOVD 50S ribosomal protein L34 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GR +L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRQVLSRRRAKGRKRLT 43
>sp|Q04CX6|RL34_OENOB 50S ribosomal protein L34 OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRD 147
++ L R HGFR+RM T +GR +L RRRAKGR
Sbjct: 8 KKRHLQRVHGFRKRMSTANGRKVLARRRAKGRK 40
>sp|Q1IY21|RL34_DEIGD 50S ribosomal protein L34 OS=Deinococcus geothermalis (strain DSM
11300) GN=rpmH PE=3 SV=1
Length = 47
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
A+THGFR RM+T +GR +L RRRAKGR ++
Sbjct: 13 AKTHGFRARMKTKAGRNVLARRRAKGRHRLT 43
>sp|A4VS85|RL34_PSEU5 50S ribosomal protein L34 OS=Pseudomonas stutzeri (strain A1501)
GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
ARTHGFR RM T +GR +L RRRAKGR ++
Sbjct: 13 ARTHGFRARMATKNGRQVLSRRRAKGRKRLT 43
>sp|B8F7T1|RL34_HAEPS 50S ribosomal protein L34 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RM T +GR +L RRRAKGR +
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|Q7VN33|RL34_HAEDU 50S ribosomal protein L34 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RM T +GR +L RRRAKGR +
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|Q2J498|RL34_FRASC 50S ribosomal protein L34 OS=Frankia sp. (strain CcI3) GN=rpmH PE=3
SV=1
Length = 45
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RMRT +GRAIL RR KGR ++
Sbjct: 14 ARTHGFRLRMRTRAGRAILSARRRKGRSEL 43
>sp|B0BTL8|RL34_ACTPJ 50S ribosomal protein L34 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RM T +GR +L RRRAKGR +
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|B3H308|RL34_ACTP7 50S ribosomal protein L34 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RM T +GR +L RRRAKGR +
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|A3N3N0|RL34_ACTP2 50S ribosomal protein L34 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
ARTHGFR RM T +GR +L RRRAKGR +
Sbjct: 13 ARTHGFRARMATKNGRQVLARRRAKGRKSL 42
>sp|A4T0N5|RL34_POLSQ 50S ribosomal protein L34 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
RTHGFR RM+T SGRA+L RRAKGR ++
Sbjct: 14 RTHGFRIRMKTKSGRAVLNARRAKGRKRL 42
>sp|B1XSP0|RL34_POLNS 50S ribosomal protein L34 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
RTHGFR RM+T SGRA+L RRAKGR ++
Sbjct: 14 RTHGFRIRMKTKSGRAVLNARRAKGRKRL 42
>sp|Q9ZCU9|RL34_RICPR 50S ribosomal protein L34 OS=Rickettsia prowazekii (strain Madrid
E) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
R HGFR RM T +GRAILK+RRAKGR ++
Sbjct: 14 RRHGFRARMITATGRAILKKRRAKGRHKL 42
>sp|Q0A4L3|RL34_ALHEH 50S ribosomal protein L34 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
RTHGFR RM T +GRA+L RRRAKGR ++
Sbjct: 14 RTHGFRARMATKNGRAVLARRRAKGRHRL 42
>sp|A8GSZ9|RL34_RICRS 50S ribosomal protein L34 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
R HGFR RM T +GRAIL++RRAKGR+++
Sbjct: 14 RRHGFRSRMATPTGRAILRKRRAKGRNKL 42
>sp|B0BUJ1|RL34_RICRO 50S ribosomal protein L34 OS=Rickettsia rickettsii (strain Iowa)
GN=rpmH PE=3 SV=1
Length = 44
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
R HGFR RM T +GRAIL++RRAKGR+++
Sbjct: 14 RRHGFRSRMATPTGRAILRKRRAKGRNKL 42
>sp|B3PIU4|RL34_CELJU 50S ribosomal protein L34 OS=Cellvibrio japonicus (strain Ueda107)
GN=rpmH PE=3 SV=1
Length = 45
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 121 RTHGFRRRMRTTSGRAILKRRRAKGRDQVVEI 152
R HGFR RM T +GR +L RRRAKGR Q+ +
Sbjct: 14 RNHGFRARMATKNGRLVLARRRAKGRKQLTRV 45
>sp|A6WGN3|RL34_KINRD 50S ribosomal protein L34 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rpmH PE=3 SV=1
Length = 45
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149
A+ HGFR RMRT +GRAIL RR KGR Q+
Sbjct: 14 AKVHGFRLRMRTRAGRAILSARRTKGRAQI 43
>sp|A8LYF8|RL34_SALAI 50S ribosomal protein L34 OS=Salinispora arenicola (strain CNS-205)
GN=rpmH PE=3 SV=1
Length = 45
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 120 ARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
A+THGFR RMRT +GRAI+ RRAKGR ++
Sbjct: 14 AKTHGFRLRMRTRAGRAIISTRRAKGRTRLA 44
>sp|P45647|RL34_COXBU 50S ribosomal protein L34 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpmH PE=3 SV=1
Length = 44
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 115 SRKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQVV 150
S++ RTHGFR RM T +GR +L RRRAKGR ++
Sbjct: 8 SKQKRNRTHGFRARMATKNGRQVLNRRRAKGRKRLT 43
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,028,848
Number of Sequences: 539616
Number of extensions: 2337529
Number of successful extensions: 8999
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8257
Number of HSP's gapped (non-prelim): 748
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)