Query 029110
Match_columns 199
No_of_seqs 117 out of 618
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 12:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_4 Ribosomal protein L34; 100.0 2.8E-42 9.5E-47 279.9 -0.5 141 1-155 1-144 (152)
2 3v2d_7 50S ribosomal protein L 99.8 5.6E-20 1.9E-24 126.6 1.5 48 104-156 2-49 (49)
3 3r8s_2 50S ribosomal protein L 99.7 3.4E-19 1.2E-23 121.3 1.9 44 104-152 2-45 (46)
4 2ftc_Q L34MT, MRP-L34, 39S rib 99.6 4.3E-17 1.5E-21 107.3 2.7 34 116-149 5-38 (38)
5 2coe_A Deoxynucleotidyltransfe 46.8 11 0.00039 28.6 2.5 36 157-192 16-55 (120)
6 2dun_A POL MU, DNA polymerase 30.8 21 0.0007 28.2 1.7 34 159-192 8-45 (133)
7 2guz_B Mitochondrial import in 29.6 18 0.0006 24.8 1.0 27 159-185 35-64 (65)
8 1hle_B Horse leukocyte elastas 26.0 24 0.00081 20.6 1.0 11 187-197 3-13 (31)
9 2ep8_A Pescadillo homolog 1; A 25.2 45 0.0015 24.0 2.5 24 159-182 10-33 (100)
10 2xn6_B Thyroxine-binding globu 21.0 32 0.0011 20.7 0.9 11 187-197 4-14 (35)
No 1
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.8e-42 Score=279.93 Aligned_cols=141 Identities=56% Similarity=0.772 Sum_probs=36.8
Q ss_pred CCccc--ccccCCCCCCCCCcCCCcccCCcceeeeecc-ccccceecccCCCCCCCCCceeeeecccccccccccccccc
Q 029110 1 MASLS--ITTSIPPPWLTSKSTHHSRRIPSASLILRTG-RSSVSVNVAGNNSSPSRPGLLHCSFVSSSLCSSAFHSAFSG 77 (199)
Q Consensus 1 ~~s~~--~~~~~~~~w~~~~s~~~~~~~p~asl~l~sg-r~s~~~~~~~~~~~~srs~~L~~sF~ss~~sssf~~ssFsg 77 (199)
||+++ .+++++.+ +..+|+++|+|++| |.....++... +++++|+|||||++|+.+ ++++|+|
T Consensus 1 ma~~~~~~~~~~~~~---------~~~~p~~s~s~~~~~r~~~~~~~~~~--~~a~s~~l~~sf~ss~~s---~~ssf~G 66 (152)
T 3bbo_4 1 MATLSLLSTGVGAAI---------TNRTPSASLTFITGSRTTNKRVSFNG--GSARSGSLHCSFLAPSSS---LSSNFSG 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cccccccccccccee---------eccCCCcccccccccccccccccccc--ccccCcceeeeecccccc---CCCcccc
Confidence 55444 46666665 67789999999999 76666566666 899999999999999966 7999999
Q ss_pred ceeeeeeccCcccccCCcceeEEEecCcccccccCCccccchhhhhhhhhhcCChhhHHHHHHHHhcCCceEeecccc
Q 029110 78 LSLGLDFNSNAGVRKEKRQGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQVVEISTF 155 (199)
Q Consensus 78 ~Slgldl~~~~~v~~~r~~~l~VraGKRtl~~TkR~~sr~kRkRkHGFraRM~Tk~GRkVL~RRR~KGRk~Ls~ss~~ 155 (199)
+++++|+++++++.++|++++||++||+++++|+|+++++||||+|||++||+|++||+||+|||+||||+|+++++.
T Consensus 67 ~sl~~~l~~~i~~~~~r~~gl~Vr~Gkr~~~~T~r~pS~~kRkR~HGFraRM~Tk~GRkVL~rRRaKGRk~Ls~s~~~ 144 (152)
T 3bbo_4 67 LSLGLDLTSNTGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCTKTNP 144 (152)
T ss_dssp -------------------------------------CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC----
T ss_pred cccccccccceeeccCCCcceEEEccCccccccCCCCccceeehhhcHHHHhcChhhHHHHHHHHHhCCcEEeeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>3v2d_7 50S ribosomal protein L34; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...
Probab=99.77 E-value=5.6e-20 Score=126.58 Aligned_cols=48 Identities=46% Similarity=0.675 Sum_probs=44.0
Q ss_pred CcccccccCCccccchhhhhhhhhhcCChhhHHHHHHHHhcCCceEeeccccc
Q 029110 104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQVVEISTFQ 156 (199)
Q Consensus 104 KRtl~~TkR~~sr~kRkRkHGFraRM~Tk~GRkVL~RRR~KGRk~Ls~ss~~r 156 (199)
||||+|+++ ||+|+|||++||+|++||+||++||+||||+|++++|-+
T Consensus 2 KRTyQPs~~-----kRkr~hGFraRm~T~~GRkVL~rRR~KGRk~Ls~s~~~~ 49 (49)
T 3v2d_7 2 KRTWQPNRR-----KRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRKR 49 (49)
T ss_dssp CCSCCCCHH-----HHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSCCCCC-
T ss_pred CCCCCCCce-----eechhhcHHHHccCcchhHHHHHHHHcCCcEeeeecccC
Confidence 788888766 999999999999999999999999999999999998853
No 3
>3r8s_2 50S ribosomal protein L34; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=99.74 E-value=3.4e-19 Score=121.31 Aligned_cols=44 Identities=43% Similarity=0.665 Sum_probs=41.2
Q ss_pred CcccccccCCccccchhhhhhhhhhcCChhhHHHHHHHHhcCCceEeec
Q 029110 104 KAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQVVEI 152 (199)
Q Consensus 104 KRtl~~TkR~~sr~kRkRkHGFraRM~Tk~GRkVL~RRR~KGRk~Ls~s 152 (199)
|||++|+++ ||+|+|||++||+|++||+||++||+||||+|+++
T Consensus 2 KrTyQPs~~-----kRkr~hGFraRm~T~~GRkvL~rRR~KGRk~Ls~s 45 (46)
T 3r8s_2 2 KRTFQPSVL-----KRNRSHGFRARMATKNGRQVLARRRAKGRARLTVS 45 (46)
T ss_dssp CCSCCCCHH-----HHHHHHSHHHHHTSHHHHHHHHHHHHHTCSCSSCC
T ss_pred CCCCCCCce-----eechhhcHHHHccCcchhHHHHHHHHcCCceeccc
Confidence 788888766 99999999999999999999999999999999986
No 4
>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.64 E-value=4.3e-17 Score=107.29 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=32.1
Q ss_pred ccchhhhhhhhhhcCChhhHHHHHHHHhcCCceE
Q 029110 116 RKSLARTHGFRRRMRTTSGRAILKRRRAKGRDQV 149 (199)
Q Consensus 116 r~kRkRkHGFraRM~Tk~GRkVL~RRR~KGRk~L 149 (199)
++||+|+|||++||+|++||+||++||+|||++|
T Consensus 5 ~~kRkr~hGFraRm~T~~GRkvl~rRR~KGR~~L 38 (38)
T 2ftc_Q 5 NIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL 38 (38)
T ss_pred cccchhhhcHHHHccChhhHHHHHHHHHcCcccC
Confidence 3499999999999999999999999999999986
No 5
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.83 E-value=11 Score=28.60 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=30.6
Q ss_pred ccccccCCcceee----ehhhhHHHHHHhhhcceeeeecc
Q 029110 157 LRNHLFNGCNIAV----INEARNCLLRRIAKQETFMVCDR 192 (199)
Q Consensus 157 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 192 (199)
.-.-+|.||.|-+ |+.+|-.++.+++.+--|.|+|.
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ 55 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENE 55 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSS
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeec
Confidence 3457899999987 46789999999999999999986
No 6
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=30.78 E-value=21 Score=28.18 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=29.6
Q ss_pred ccccCCcceeee----hhhhHHHHHHhhhcceeeeecc
Q 029110 159 NHLFNGCNIAVI----NEARNCLLRRIAKQETFMVCDR 192 (199)
Q Consensus 159 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 192 (199)
+-.|+||+|-++ +.+|.-+|.++|.+--|.|||.
T Consensus 8 ~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~ 45 (133)
T 2dun_A 8 STRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDA 45 (133)
T ss_dssp SCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSS
T ss_pred ccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccc
Confidence 467999999885 5689999999999999999985
No 7
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=29.60 E-value=18 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=19.8
Q ss_pred ccccCCcc---eeeehhhhHHHHHHhhhcc
Q 029110 159 NHLFNGCN---IAVINEARNCLLRRIAKQE 185 (199)
Q Consensus 159 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 185 (199)
||-=.|-. -.-||+|+.||+..+.++|
T Consensus 35 nhPDkGGS~yl~~ki~~Ake~l~~~~~~~~ 64 (65)
T 2guz_B 35 NDKEKGGSFYLQSKVYRAAERLKWELAQRE 64 (65)
T ss_dssp TCGGGTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555 5668999999999887765
No 8
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=26.05 E-value=24 Score=20.57 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=8.2
Q ss_pred eeeeccccccc
Q 029110 187 FMVCDRPFHLF 197 (199)
Q Consensus 187 ~~~~~~~~~~~ 197 (199)
.+.+||||-++
T Consensus 3 ~f~~drPFlf~ 13 (31)
T 1hle_B 3 NFNADHPFIFF 13 (31)
T ss_dssp EEECCSCEEEE
T ss_pred EEEEeCCEEEE
Confidence 46789999654
No 9
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.15 E-value=45 Score=23.99 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=18.1
Q ss_pred ccccCCcceeeehhhhHHHHHHhh
Q 029110 159 NHLFNGCNIAVINEARNCLLRRIA 182 (199)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~ 182 (199)
..||.||.+-|..|.....|+.+.
T Consensus 10 ~~LF~g~~F~i~~e~p~~~le~~I 33 (100)
T 2ep8_A 10 KKLFEGLKFFLNREVPREALAFII 33 (100)
T ss_dssp CCTTSSCEEECCSSSCHHHHHHHH
T ss_pred HHHcCCcEEEEecCCCHHHHHHHH
Confidence 569999999998887666666543
No 10
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=21.02 E-value=32 Score=20.66 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.3
Q ss_pred eeeeccccccc
Q 029110 187 FMVCDRPFHLF 197 (199)
Q Consensus 187 ~~~~~~~~~~~ 197 (199)
.+.+||||-++
T Consensus 4 ~f~~drPFlf~ 14 (35)
T 2xn6_B 4 IIQIDRSFMLL 14 (35)
T ss_dssp EEECCBCEEEE
T ss_pred EEEecCCEEEE
Confidence 36789999765
Done!