Query 029110
Match_columns 199
No_of_seqs 117 out of 618
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 12:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o66a_ c.1.12.8 (A:) Ketopant 29.1 25 0.0018 27.8 4.1 60 138-197 7-88 (260)
2 d2dlqa2 g.37.1.1 (A:35-62) GLI 11.6 14 0.001 21.3 -0.9 8 170-177 19-26 (28)
3 d1ewqa1 a.113.1.1 (A:267-541) 10.5 58 0.0042 22.9 1.9 21 123-143 7-27 (275)
4 d1hd6a_ a.10.1.1 (A:) ER-22 {E 8.6 33 0.0024 20.7 -0.1 12 4-15 26-37 (37)
5 d2i3da1 c.69.1.36 (A:2-219) Hy 8.4 44 0.0032 23.3 0.5 24 159-182 188-211 (218)
6 d1wb9a1 a.113.1.1 (A:270-566) 8.2 80 0.0059 22.2 1.9 23 121-143 21-43 (297)
7 d3bzka5 c.55.3.13 (A:325-473) 7.6 1E+02 0.0074 21.9 2.2 24 144-173 3-26 (149)
8 d1cdza_ c.15.1.1 (A:) DNA-repa 7.0 67 0.0049 19.5 0.9 13 160-172 4-16 (96)
9 d1joca1 g.50.1.1 (A:1348-1411) 6.9 53 0.0038 20.2 0.3 12 187-198 11-22 (64)
10 d1m3ua_ c.1.12.8 (A:) Ketopant 6.9 1.4E+02 0.01 23.3 2.9 60 137-197 6-88 (262)
No 1
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}
Probab=29.13 E-value=25 Score=27.83 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=34.1
Q ss_pred HHHHHhcCCceEeeccccccccccc--CCcceeeehhh--------------------hHHHHHHhhhcceeeeeccccc
Q 029110 138 LKRRRAKGRDQVVEISTFQLRNHLF--NGCNIAVINEA--------------------RNCLLRRIAKQETFMVCDRPFH 195 (199)
Q Consensus 138 L~RRR~KGRk~Ls~ss~~r~~~~~~--~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 195 (199)
|...+.+|+|-.....-.-.--.+. -||+|.++-.. .-+-.-|=+...+|+++|-||.
T Consensus 7 L~~~K~~g~ki~~lTayd~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~ 86 (260)
T d1o66a_ 7 LQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFG 86 (260)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTT
T ss_pred HHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhh
Confidence 5566677777644433222222333 37888887221 1122223355679999999997
Q ss_pred cc
Q 029110 196 LF 197 (199)
Q Consensus 196 ~~ 197 (199)
-|
T Consensus 87 sy 88 (260)
T d1o66a_ 87 AY 88 (260)
T ss_dssp SS
T ss_pred hh
Confidence 55
No 2
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.56 E-value=14 Score=21.26 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=5.8
Q ss_pred ehhhhHHH
Q 029110 170 INEARNCL 177 (199)
Q Consensus 170 ~~~~~~~~ 177 (199)
-.|||||+
T Consensus 19 ehearncm 26 (28)
T d2dlqa2 19 EHEARNCM 26 (28)
T ss_dssp HHHHHCCC
T ss_pred HHHHHhhh
Confidence 35888885
No 3
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]}
Probab=10.50 E-value=58 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.6
Q ss_pred hhhhhhcCChhhHHHHHHHHh
Q 029110 123 HGFRRRMRTTSGRAILKRRRA 143 (199)
Q Consensus 123 HGFraRM~Tk~GRkVL~RRR~ 143 (199)
.+++.|-.|+.|++.|+++-.
T Consensus 7 ~~~ln~t~T~~GkRlLr~wl~ 27 (275)
T d1ewqa1 7 FSVLDETRTAPGRRLLQSWLR 27 (275)
T ss_dssp HHHHCCCSSHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHh
Confidence 478889999999999987654
No 4
>d1hd6a_ a.10.1.1 (A:) ER-22 {Euplotes raikovi [TaxId: 5938]}
Probab=8.61 E-value=33 Score=20.69 Aligned_cols=12 Identities=50% Similarity=1.198 Sum_probs=10.0
Q ss_pred ccccccCCCCCC
Q 029110 4 LSITTSIPPPWL 15 (199)
Q Consensus 4 ~~~~~~~~~~w~ 15 (199)
|++.+|-+|||.
T Consensus 26 l~v~gsc~pp~s 37 (37)
T d1hd6a_ 26 LAVKGSCPPPWS 37 (37)
T ss_dssp HHHHHHSCSSCC
T ss_pred eeeeccCCCCCC
Confidence 678899999993
No 5
>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.35 E-value=44 Score=23.27 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=19.2
Q ss_pred ccccCCcceeeehhhhHHHHHHhh
Q 029110 159 NHLFNGCNIAVINEARNCLLRRIA 182 (199)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~ 182 (199)
+|+|+|....+..++.+-|-+++.
T Consensus 188 dHfF~g~~~~l~~~v~~~l~~~l~ 211 (218)
T d2i3da1 188 NHFFNGKVDELMGECEDYLDRRLN 211 (218)
T ss_dssp CTTCTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcC
Confidence 699999988888887777766654
No 6
>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
Probab=8.18 E-value=80 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=19.5
Q ss_pred hhhhhhhhcCChhhHHHHHHHHh
Q 029110 121 RTHGFRRRMRTTSGRAILKRRRA 143 (199)
Q Consensus 121 RkHGFraRM~Tk~GRkVL~RRR~ 143 (199)
--.|.+.+-.|+.|++.|+++-.
T Consensus 21 SL~~~ln~c~T~~GkRlLr~wLl 43 (297)
T d1wb9a1 21 TLASVLDCTVTPMGSRMLKRWLH 43 (297)
T ss_dssp SHHHHHCCCSSHHHHHHHHHHHH
T ss_pred cHHHHHcCCCCcHHHHHHHHHHh
Confidence 45789999999999999987654
No 7
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.57 E-value=1e+02 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=13.8
Q ss_pred cCCceEeecccccccccccCCcceeeehhh
Q 029110 144 KGRDQVVEISTFQLRNHLFNGCNIAVINEA 173 (199)
Q Consensus 144 KGRk~Ls~ss~~r~~~~~~~~~~~~~~~~~ 173 (199)
+|+..|...-.+| +||-+|+++|-
T Consensus 3 ~~~~vlg~DPg~r------~gck~AvlD~~ 26 (149)
T d3bzka5 3 GPRATLGLDPGLR------TGVKVAVVDAT 26 (149)
T ss_dssp CSCCEEEEECCST------TCEEEEEECTT
T ss_pred CCceEEEECCCcc------cccEEEEECCC
Confidence 4555555533222 68888887753
No 8
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.04 E-value=67 Score=19.48 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.9
Q ss_pred cccCCcceeeehh
Q 029110 160 HLFNGCNIAVINE 172 (199)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (199)
-+|.||.+.|.++
T Consensus 4 d~F~g~~f~v~g~ 16 (96)
T d1cdza_ 4 DFFQGKHFFLYGE 16 (96)
T ss_dssp CTTTTCEEEECSC
T ss_pred cccCCcEEEEeCC
Confidence 3899999999864
No 9
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.90 E-value=53 Score=20.21 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=9.4
Q ss_pred eeeecccccccc
Q 029110 187 FMVCDRPFHLFF 198 (199)
Q Consensus 187 ~~~~~~~~~~~~ 198 (199)
=|.|+.+|.+|.
T Consensus 11 C~~C~~~F~~~~ 22 (64)
T d1joca1 11 CMACGKGFSVTV 22 (64)
T ss_dssp CTTTCCBCCSSS
T ss_pred CcCcCCcccCCc
Confidence 367999998875
No 10
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}
Probab=6.86 E-value=1.4e+02 Score=23.34 Aligned_cols=60 Identities=17% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHHHHHhcCCceEeeccccccccccc--CCcceeeehh-------------------hhH-H-HHHHhhhcceeeeeccc
Q 029110 137 ILKRRRAKGRDQVVEISTFQLRNHLF--NGCNIAVINE-------------------ARN-C-LLRRIAKQETFMVCDRP 193 (199)
Q Consensus 137 VL~RRR~KGRk~Ls~ss~~r~~~~~~--~~~~~~~~~~-------------------~~~-~-~~~~~~~~~~~~~~~~~ 193 (199)
-|++.+.+|+|-.....-...--.+. -||+|.++-. .-+ + -.+| +..-+|+|+|-|
T Consensus 6 ~L~~~K~~g~ki~~lTayD~~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~r-ga~~~~vv~DmP 84 (262)
T d1m3ua_ 6 LLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRR-GAPNCLLLADLP 84 (262)
T ss_dssp HHHHHHHHTCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHH-HCTTSEEEEECC
T ss_pred HHHHHHhCCCcEEEEEcCCHHHHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHh-ccccceeEeccc
Confidence 35666777877644433333333344 2778777632 111 1 1223 346689999999
Q ss_pred cccc
Q 029110 194 FHLF 197 (199)
Q Consensus 194 ~~~~ 197 (199)
|.-|
T Consensus 85 f~sy 88 (262)
T d1m3ua_ 85 FMAY 88 (262)
T ss_dssp TTSS
T ss_pred cccc
Confidence 9654
Done!