Query 029111
Match_columns 199
No_of_seqs 117 out of 1115
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03751 proteasome_alpha_type_ 100.0 7.3E-60 1.6E-64 376.2 24.4 194 2-197 2-196 (212)
2 cd03755 proteasome_alpha_type_ 100.0 1.9E-59 4.2E-64 372.7 24.1 194 4-198 1-195 (207)
3 cd03750 proteasome_alpha_type_ 100.0 7E-59 1.5E-63 374.3 24.4 193 4-198 1-194 (227)
4 cd03752 proteasome_alpha_type_ 100.0 1.1E-58 2.3E-63 370.0 24.4 195 2-197 1-197 (213)
5 cd03754 proteasome_alpha_type_ 100.0 1E-57 2.2E-62 364.6 24.1 195 3-198 1-201 (215)
6 TIGR03633 arc_protsome_A prote 100.0 1.5E-57 3.2E-62 366.0 24.4 195 2-198 1-196 (224)
7 cd03756 proteasome_alpha_arche 100.0 2.3E-57 5E-62 361.8 24.1 193 3-197 1-194 (211)
8 PTZ00246 proteasome subunit al 100.0 3.4E-57 7.3E-62 369.9 24.4 195 2-197 3-199 (253)
9 cd03749 proteasome_alpha_type_ 100.0 3.8E-57 8.2E-62 360.5 23.9 190 4-197 1-193 (211)
10 KOG0176 20S proteasome, regula 100.0 4.2E-58 9.2E-63 348.1 16.3 196 1-198 5-206 (241)
11 cd01911 proteasome_alpha prote 100.0 6.8E-57 1.5E-61 358.6 23.5 194 4-198 1-195 (209)
12 PRK03996 proteasome subunit al 100.0 1E-56 2.2E-61 364.8 23.9 195 2-198 8-203 (241)
13 cd03753 proteasome_alpha_type_ 100.0 2.3E-56 4.9E-61 356.5 23.6 192 4-197 1-198 (213)
14 COG0638 PRE1 20S proteasome, a 100.0 3.3E-54 7.2E-59 348.3 22.9 192 2-197 1-195 (236)
15 KOG0183 20S proteasome, regula 100.0 1.6E-55 3.5E-60 337.7 14.4 196 1-197 1-199 (249)
16 KOG0184 20S proteasome, regula 100.0 1.7E-53 3.7E-58 328.1 18.2 192 3-196 7-199 (254)
17 KOG0181 20S proteasome, regula 100.0 1.1E-52 2.4E-57 317.9 14.2 193 3-197 5-198 (233)
18 KOG0182 20S proteasome, regula 100.0 1.6E-50 3.4E-55 309.7 17.8 196 1-197 6-205 (246)
19 KOG0178 20S proteasome, regula 100.0 7.7E-50 1.7E-54 305.8 18.4 193 3-196 4-199 (249)
20 KOG0863 20S proteasome, regula 100.0 2.5E-45 5.5E-50 284.3 17.9 192 2-197 4-198 (264)
21 cd03758 proteasome_beta_type_2 100.0 1.1E-43 2.4E-48 279.4 19.6 165 31-198 2-168 (193)
22 cd03760 proteasome_beta_type_4 100.0 9.7E-44 2.1E-48 280.6 19.3 167 29-198 1-172 (197)
23 cd03759 proteasome_beta_type_3 100.0 1.2E-43 2.7E-48 279.5 19.3 165 29-198 2-169 (195)
24 TIGR03691 20S_bact_alpha prote 100.0 6.7E-43 1.5E-47 280.8 21.0 178 12-197 8-189 (228)
25 TIGR03690 20S_bact_beta protea 100.0 6.2E-43 1.3E-47 280.1 19.6 168 29-197 1-171 (219)
26 cd03761 proteasome_beta_type_5 100.0 1E-42 2.2E-47 272.9 19.7 162 31-198 1-164 (188)
27 TIGR03634 arc_protsome_B prote 100.0 3.5E-42 7.6E-47 269.1 20.1 163 30-198 1-165 (185)
28 cd03757 proteasome_beta_type_1 100.0 4.4E-42 9.4E-47 274.0 18.9 167 27-198 5-182 (212)
29 PF00227 Proteasome: Proteasom 100.0 8.1E-42 1.7E-46 267.5 20.0 170 27-197 1-174 (190)
30 cd03762 proteasome_beta_type_6 100.0 6.3E-41 1.4E-45 262.7 19.8 162 31-198 1-164 (188)
31 cd03764 proteasome_beta_archea 100.0 7.1E-41 1.5E-45 262.4 20.1 161 31-197 1-163 (188)
32 cd03765 proteasome_beta_bacter 100.0 5.9E-41 1.3E-45 270.1 19.9 165 31-197 1-181 (236)
33 PTZ00488 Proteasome subunit be 100.0 6.3E-41 1.4E-45 272.3 19.5 167 26-198 35-203 (247)
34 cd01906 proteasome_protease_Hs 100.0 2.1E-40 4.5E-45 257.8 21.4 164 31-197 1-166 (182)
35 cd03763 proteasome_beta_type_7 100.0 1.3E-40 2.8E-45 261.2 19.8 160 31-197 1-162 (189)
36 cd01912 proteasome_beta protea 100.0 3.6E-40 7.7E-45 258.3 19.7 162 31-197 1-164 (189)
37 KOG0177 20S proteasome, regula 100.0 3.7E-36 8.1E-41 227.1 13.7 166 30-198 1-168 (200)
38 KOG0173 20S proteasome, regula 100.0 3.8E-33 8.2E-38 219.0 13.8 165 25-196 32-198 (271)
39 KOG0185 20S proteasome, regula 100.0 3.2E-33 7E-38 217.4 12.7 188 8-198 13-212 (256)
40 KOG0175 20S proteasome, regula 100.0 4.7E-33 1E-37 219.0 12.4 165 27-197 68-234 (285)
41 cd01901 Ntn_hydrolase The Ntn 100.0 7.9E-31 1.7E-35 198.5 21.0 161 31-196 1-164 (164)
42 KOG0179 20S proteasome, regula 100.0 4.1E-31 9E-36 202.6 15.4 165 28-197 27-204 (235)
43 KOG0174 20S proteasome, regula 100.0 2.5E-31 5.3E-36 201.6 12.7 166 26-197 15-182 (224)
44 PRK05456 ATP-dependent proteas 100.0 2.2E-30 4.7E-35 199.5 16.9 152 30-198 1-157 (172)
45 KOG0180 20S proteasome, regula 100.0 1.8E-29 3.8E-34 188.3 15.6 165 28-197 6-173 (204)
46 cd01913 protease_HslV Protease 100.0 7.3E-29 1.6E-33 190.0 16.4 149 31-197 1-155 (171)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 3.6E-28 7.9E-33 186.1 16.2 151 31-198 1-156 (171)
48 PF10584 Proteasome_A_N: Prote 99.5 9.5E-15 2.1E-19 74.0 2.5 23 4-26 1-23 (23)
49 COG3484 Predicted proteasome-t 99.4 9E-13 2E-17 101.6 9.5 163 30-194 1-179 (255)
50 COG5405 HslV ATP-dependent pro 99.3 4.9E-11 1.1E-15 88.9 10.5 150 29-193 3-158 (178)
51 PF09894 DUF2121: Uncharacteri 95.3 0.51 1.1E-05 36.9 11.2 30 168-197 131-161 (194)
52 KOG3361 Iron binding protein i 82.0 3 6.6E-05 30.6 4.3 42 147-188 71-113 (157)
53 COG4079 Uncharacterized protei 81.9 27 0.00058 28.6 11.9 31 168-198 132-163 (293)
54 smart00481 POLIIIAc DNA polyme 56.9 19 0.00042 22.5 3.5 32 9-40 6-38 (67)
55 PRK00912 ribonuclease P protei 51.2 21 0.00046 28.6 3.6 38 1-39 1-38 (237)
56 PF07499 RuvA_C: RuvA, C-termi 50.9 13 0.00029 21.9 1.8 30 163-192 13-44 (47)
57 KOG3652 Uncharacterized conser 47.0 37 0.00081 31.9 4.8 115 73-199 191-306 (1215)
58 PF11211 DUF2997: Protein of u 42.7 48 0.001 19.8 3.4 32 147-178 3-34 (48)
59 PRK07328 histidinol-phosphatas 42.1 36 0.00077 27.9 3.7 39 1-39 1-40 (269)
60 COG1754 Uncharacterized C-term 41.8 19 0.00042 30.0 2.0 55 133-190 76-133 (298)
61 COG0279 GmhA Phosphoheptose is 41.5 34 0.00073 26.4 3.2 35 11-45 116-151 (176)
62 PF08958 DUF1871: Domain of un 41.0 46 0.001 22.2 3.4 32 168-199 42-77 (79)
63 PF05681 Fumerase: Fumarate hy 39.9 2.2E+02 0.0048 23.7 8.9 88 107-197 79-169 (271)
64 PF04539 Sigma70_r3: Sigma-70 37.9 59 0.0013 20.8 3.7 29 85-113 3-31 (78)
65 PF06057 VirJ: Bacterial virul 37.5 40 0.00087 26.5 3.1 33 102-138 44-76 (192)
66 KOG0330 ATP-dependent RNA heli 35.5 46 0.00099 29.3 3.4 88 67-158 99-193 (476)
67 PF02811 PHP: PHP domain; Int 31.5 56 0.0012 24.0 3.1 31 9-39 7-38 (175)
68 PF10632 He_PIG_assoc: He_PIG 30.7 74 0.0016 16.9 2.4 23 130-154 4-26 (29)
69 COG0031 CysK Cysteine synthase 30.0 3.4E+02 0.0074 22.9 8.2 174 9-195 33-256 (300)
70 KOG0088 GTPase Rab21, small G 29.4 45 0.00098 25.7 2.1 79 35-119 82-177 (218)
71 PF12481 DUF3700: Aluminium in 28.6 3.2E+02 0.0069 22.1 11.4 84 21-109 33-126 (228)
72 TIGR02701 shell_carb_anhy carb 28.5 42 0.0009 29.5 2.0 58 128-196 236-296 (450)
73 PF07104 DUF1366: Protein of u 26.3 57 0.0012 23.5 2.1 46 149-195 11-57 (116)
74 COG3140 Uncharacterized protei 25.5 1.2E+02 0.0025 18.8 3.0 29 168-196 14-43 (60)
75 PF01242 PTPS: 6-pyruvoyl tetr 25.2 1.3E+02 0.0027 21.4 3.8 46 75-120 43-98 (123)
76 PRK00810 nifW nitrogenase stab 24.9 93 0.002 22.3 3.0 20 180-199 55-75 (113)
77 COG4831 Roadblock/LC7 domain [ 24.8 31 0.00067 23.9 0.5 9 10-18 19-27 (109)
78 TIGR02261 benz_CoA_red_D benzo 24.8 1.3E+02 0.0029 24.8 4.3 51 134-193 104-158 (262)
79 PF14593 PH_3: PH domain; PDB: 24.7 68 0.0015 22.5 2.3 17 142-158 36-52 (104)
80 PRK08230 tartrate dehydratase 24.6 4.3E+02 0.0094 22.3 8.1 73 122-197 103-181 (299)
81 COG4728 Uncharacterized protei 24.5 91 0.002 22.0 2.8 31 62-92 9-39 (124)
82 PF08140 Cuticle_1: Crustacean 23.2 1.3E+02 0.0027 17.4 2.7 29 10-45 5-33 (40)
83 PF08289 Flu_M1_C: Influenza M 22.9 2.5E+02 0.0054 19.0 4.5 49 75-124 39-88 (95)
84 PF03701 UPF0181: Uncharacteri 22.1 1.6E+02 0.0036 17.8 3.2 30 168-197 14-44 (51)
85 PF08936 CsoSCA: Carboxysome S 21.4 1.7E+02 0.0038 26.0 4.5 57 128-195 235-294 (459)
86 COG1387 HIS2 Histidinol phosph 20.9 1.1E+02 0.0024 24.6 3.2 29 8-37 8-36 (237)
87 KOG3087 Serine/threonine prote 20.6 4E+02 0.0086 21.4 5.9 46 143-191 74-120 (229)
88 COG4537 ComGC Competence prote 20.3 2.1E+02 0.0045 20.2 3.8 27 82-108 50-77 (107)
No 1
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-60 Score=376.16 Aligned_cols=194 Identities=39% Similarity=0.557 Sum_probs=187.9
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
.+||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.+...++.+||++|++|++++++|+.+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 58999999999999999999999999999999999999999999999998877777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.+++++|.+++.|++.+|++++++.++++|++++|.|++++++|||++++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D--~~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYD--SDGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEe--CCcCEEEEECCCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
|+|+|+..++++||+.|+++|| +||+++++++|+++
T Consensus 160 a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~ 196 (212)
T cd03751 160 AIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIV 196 (212)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999865
No 2
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-59 Score=372.73 Aligned_cols=194 Identities=81% Similarity=1.231 Sum_probs=188.0
Q ss_pred CCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHH
Q 029111 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 83 (199)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.+..++.+++.+||++|++|+++++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEE
Q 029111 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (199)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~ 163 (199)
+.+++|.+++.|++.++++|+++.++++|++++|+|+++++.|||++++||+|||+ +++|+||.+||+|++.+++++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999997 67999999999999999999999
Q ss_pred cCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 164 GRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 164 G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
|+|+..++++||+.|+++|+ +||++++++||+++.
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~ 195 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVV 195 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 999999999999763
No 3
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-59 Score=374.30 Aligned_cols=193 Identities=45% Similarity=0.715 Sum_probs=187.7
Q ss_pred CCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHH
Q 029111 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 83 (199)
||+.+|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEE
Q 029111 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (199)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~ 163 (199)
+.+++|.+++.|++.+|++++++.++++|++++|.|+++++.|||++++||+|||+ .||+||++||+|++.+++++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999994 6899999999999999999999
Q ss_pred cCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 164 GRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 164 G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
|+|++.++++||+.|+++|| +||++++++||+++.
T Consensus 159 G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~ 194 (227)
T cd03750 159 GKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGF 194 (227)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 999999999998653
No 4
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-58 Score=370.00 Aligned_cols=195 Identities=42% Similarity=0.710 Sum_probs=187.8
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
++||+.+|+|||||||+|+|||+||+++|+|+|||+++||||||+|++.+++++. +++.+||++|++|+++++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 4799999999999999999999999999999999999999999999999886655 448999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.+.+++|.+++.|+++++++++++.+++.|+..+|.|++.++.|||++++||+|||+ +.||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 67899999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+|+|+++..++++||+.|+++|| +||++++++||+++
T Consensus 160 ~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~ 197 (213)
T cd03752 160 TAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKT 197 (213)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999876
No 5
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-57 Score=364.65 Aligned_cols=195 Identities=39% Similarity=0.630 Sum_probs=186.5
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~-g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
+||+++|+|||||||+|+|||+||+++ |+|+|||+++||||||+|+|.++.++..++.+||++|++|++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 7899999999999999999998877666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.+.+++|.++..|+++++++++++.+|+++++++|.|+++++.|||++++||+|+|+ ++||+||++||+|++.+++++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccCC--C--c-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKNYKET--S--G-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~--~--s-~ea~~l~~~~l~~~~ 198 (199)
|+|+|++.++++||+.|+++ | + +||++++++||+++.
T Consensus 160 a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~ 201 (215)
T cd03754 160 AAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVL 201 (215)
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999995 7 9 999999999999763
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.5e-57 Score=366.01 Aligned_cols=195 Identities=51% Similarity=0.846 Sum_probs=188.9
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
|+||.++|+|||||||+|+|||++|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|+++++||+.+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 68999999999999999999999999999999999999999999999998777777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.+.+.++.++..|+++++++++++.++++|++.+|.|+++++.|||++++||+|+| +++|+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d--~~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999998999999999999999 578999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
++|+|+.+++++||+.|+++|+ +||++++++||+++.
T Consensus 159 a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~ 196 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAV 196 (224)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999998753
No 7
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-57 Score=361.80 Aligned_cols=193 Identities=51% Similarity=0.868 Sum_probs=187.3
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 82 (199)
+||.++|+|||||||+|+|||.||+++|+|+|||+++||||||+|++.++.++..++.+||++|++|+++++||+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999987777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEE
Q 029111 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a 162 (199)
.+.+.++.+++.|+++++++++++.++++|++.+|.|++++++|||++++||+||| +++|+||.+||+|++.++++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D--~~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEe--CCCCEEEEECCCCCeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999 4789999999999999999999
Q ss_pred EcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+|+|++.++++||+.|+|+|+ +||++++++||+++
T Consensus 159 ~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~ 194 (211)
T cd03756 159 IGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAA 194 (211)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999865
No 8
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.4e-57 Score=369.89 Aligned_cols=195 Identities=43% Similarity=0.694 Sum_probs=187.0
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCccccccc-ccccceEEecCCEEEEEeecHhh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDS-RMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~-~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
.+||+++|+|||||||+|+|||+||+++|+|+|||+++||||||+|++.+++++.. ++.+||++|++|++++++|..+|
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 46999999999999999999999999999999999999999999999998866554 46899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.+.+.+|.+++.|++.++++++++.++++++..+|.|++++++|||++++||+|||+ +++|+||++||+|++.++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeC-CCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999999999999999999999999996 68999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+|+|.|+.+++++||+.|+++|+ +||++++++||+++
T Consensus 162 ~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~ 199 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKS 199 (253)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999875
No 9
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-57 Score=360.51 Aligned_cols=190 Identities=42% Similarity=0.690 Sum_probs=182.4
Q ss_pred CCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHH
Q 029111 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 83 (199)
||+++|+|||||||+|+|||++|+++|+|+|||+++||||||+|++.++.+. ++.+||++|++|+++++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999877653 35699999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEE
Q 029111 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (199)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~ 163 (199)
+.++++.+++.|+++++++++++.+++++++.+|.|+++.+.|||++++||+|||+ .||+||++||+|++.+++++|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEeeeeEEEE
Confidence 99999999999999999999999999999999999999989999999999999994 6899999999999999999999
Q ss_pred cCCcHhHHHHHHhhcc--CCCc-HHHHHHHHHHHhhc
Q 029111 164 GRNSNSIREFLEKNYK--ETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 164 G~g~~~~~~~Le~~~~--~~~s-~ea~~l~~~~l~~~ 197 (199)
|+|++.++++||+.|+ ++|+ +|++++++++|+++
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~ 193 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRET 193 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 5999 99999999999875
No 10
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-58 Score=348.11 Aligned_cols=196 Identities=42% Similarity=0.713 Sum_probs=188.0
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
|+.||+.+|+|||||||||+|||.+|++.|+|.|||+.++||||++++|++++|+.+++++||++|++||+|++||+.+|
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCC-----CcccccceeeeeeeCCCCCceEEEECCCCCe
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTF 155 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~-----~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~ 155 (199)
.+++++++|.++++|++.||++++++.+.+.++++...|-.... .|||||++++||+| ++||+||+.||+|++
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D--~~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHD--ETGPQLYHLDPSGTF 162 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeecc--CCCceEEEeCCCCce
Confidence 99999999999999999999999999999999999877765422 48999999999999 689999999999999
Q ss_pred eeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 156 SAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 156 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
.+|++-|+|+|+..|.+.|++.|+++|+ +||+.++++.|+.||
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVM 206 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVM 206 (241)
T ss_pred EEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999875
No 11
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=6.8e-57 Score=358.60 Aligned_cols=194 Identities=58% Similarity=0.895 Sum_probs=187.7
Q ss_pred CCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHH
Q 029111 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 83 (199)
||.++|+|||||||+|+|||++++++|+|+|||+++||||+|+|++.+.+++..++.+||++|++|++++++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999887766688999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEE
Q 029111 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (199)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~ 163 (199)
+.+.++.++..|+.++|++++++.+++++++.+|.|++++++|||++++||+|||+ +++|+||.+||.|++.+++++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999997 56999999999999999999999
Q ss_pred cCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 164 GRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 164 G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
|.|+..++++||+.|+++|+ +||++++++||+++.
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~ 195 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVL 195 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999998764
No 12
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1e-56 Score=364.76 Aligned_cols=195 Identities=52% Similarity=0.848 Sum_probs=188.7
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
++||.++|+|||||||+|+|||.+|+++|+|+|||+++||||||+|++.++.+...++.+||++|++|+++++||..+|+
T Consensus 8 ~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (241)
T PRK03996 8 MGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADA 87 (241)
T ss_pred cccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHH
Confidence 47999999999999999999999999999999999999999999999998877777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.++++++.+++.|++.++++++++.+++++++.+|.|+++++.|||++++|||||| ++||+||.+||+|++.+++++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d--~~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 88 RVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 478999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
|+|.|+..++++||+.|+++|+ +||++++++||+++.
T Consensus 166 a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~ 203 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKAN 203 (241)
T ss_pred EECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999999764
No 13
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-56 Score=356.55 Aligned_cols=192 Identities=43% Similarity=0.731 Sum_probs=184.1
Q ss_pred CCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHH
Q 029111 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~ 83 (199)
||+++|+|||||||+|+|||++++++|+|+|||+++||||||+|++.++++...++.+||++|++|++|+++|+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999877777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhccc-----CCCcccccceeeeeeeCCCCCceEEEECCCCCeeee
Q 029111 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS-----GGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (199)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~-----~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~ 158 (199)
+.+.++.+++.|++.+|++++++.++++|++.+|.|++. .+.|||++++||+||| ++||+||.+||+|++.++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D--~~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD--ENGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEc--CCCCEEEEECCCCCeecc
Confidence 999999999999999999999999999999999999874 3469999999999999 578999999999999999
Q ss_pred eEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 159 KANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 159 ~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+++++|++++.++++||+.|+++|+ +||++++++||+.+
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~ 198 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQV 198 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999875
No 14
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-54 Score=348.33 Aligned_cols=192 Identities=49% Similarity=0.802 Sum_probs=184.1
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcC-CcEEEEEeCCEEEEEEeccCccc-ccccccccceEEecCCEEEEEeecHh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKG-NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKA 79 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g-~t~vgi~~~dgVvla~d~~~~~~-l~~~~~~~ki~~i~~~i~~~~sG~~~ 79 (199)
++||+.+++|+|||+++|+|||.+++++| +|+|||+++||||||+|+|.+++ ++..++.+||++|+|||+|+++|+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999875 99999999999999999999985 55666799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee
Q 029111 80 DARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (199)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~ 159 (199)
|++.|+++++.+++.|++.+|++|+++.+++++++++|.|+++ .|||++++||+|+|+ ++|+||++||+|++.+++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~~~~ 156 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD--GGPRLYSTDPSGSYNEYK 156 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC--CCCeEEEECCCCceeecC
Confidence 9999999999999999999999999999999999999999987 899999999999994 889999999999999999
Q ss_pred EEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 160 ANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
++|+|+|++.++++||+.|+++|+ |||++++++||+++
T Consensus 157 ~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a 195 (236)
T COG0638 157 ATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAA 195 (236)
T ss_pred EEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999976
No 15
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-55 Score=337.73 Aligned_cols=196 Identities=77% Similarity=1.178 Sum_probs=191.3
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
|++||+-+|+|||||+|||+|||++|+.+|+|+||++++|+|||+.+++...+|++.++..||..+++|++|+++|+.+|
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.+++++|.+|++|+++.+.+++++.++++++.+.|.|||+.+.||||++.+|+|+|+ ++.|+||++||+|.+.+|++
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~-~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDP-DGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCC-CCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999 78999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCC--Cc-HHHHHHHHHHHhhc
Q 029111 161 NATGRNSNSIREFLEKNYKET--SG-QETVKLAIRALLEV 197 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~--~s-~ea~~l~~~~l~~~ 197 (199)
.|+|.+++.++.+|||+|.+. .+ .++++|++++|.+|
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleV 199 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEV 199 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHH
Confidence 999999999999999999976 67 99999999999876
No 16
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-53 Score=328.07 Aligned_cols=192 Identities=38% Similarity=0.563 Sum_probs=187.1
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 82 (199)
+||...++|||+||+||+|||+|||.+++|+|||||||||||++|+..+++|..+...+||+.|++||+|+++|+.+|.+
T Consensus 7 GyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~ 86 (254)
T KOG0184|consen 7 GYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGR 86 (254)
T ss_pred cccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEE
Q 029111 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a 162 (199)
.+..++|.++.+|+.+++.++|...+++++++..|.||.++..||||++.|+++|| ++||+||.+||+|..+.++++|
T Consensus 87 ~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd--~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 87 HLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYD--DEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEe--CCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred EcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhh
Q 029111 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLE 196 (199)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~ 196 (199)
+|.|.+.|++.|||.-..+|+ +|+++.+.+.+..
T Consensus 165 iGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~ 199 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYK 199 (254)
T ss_pred ccchhHHHHHHHHhcccccccHHHHHHHHHheeEe
Confidence 999999999999999889999 9999999888764
No 17
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=317.90 Aligned_cols=193 Identities=42% Similarity=0.695 Sum_probs=188.8
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 82 (199)
+|..++|+|||+||+-|+|||+.|+.+|.+.|||+-.||||||++++..+.|.+..+++|++.|.+||+|.+||..+|++
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~R 84 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYR 84 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCcee
Confidence 69999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEE
Q 029111 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a 162 (199)
.+++..|+.++.|...|+++||+..|+..++.++|+|||+++.||||++++++||| +++|.||++||+|++..|+++|
T Consensus 85 vlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~--~~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 85 VLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWD--EGGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred ehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecC--CCceeEEEECCccceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999 5899999999999999999999
Q ss_pred EcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+|.+...++.+||++|+++|. ++++..++..|++.
T Consensus 163 ~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~ 198 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKES 198 (233)
T ss_pred hccCcchHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999863
No 18
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-50 Score=309.74 Aligned_cols=196 Identities=39% Similarity=0.618 Sum_probs=190.0
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKA 79 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~-g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~ 79 (199)
|.+|||++|+|||||||+|+|||.||+++ |-|.||++++|++|+++.++.+.+|++++++..+|+|+.+|+|+++|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 56899999999999999999999999998 67999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee
Q 029111 80 DARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (199)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~ 159 (199)
|.+..+.++|.++.++++++|.+||++.||++++++.|.|+|+..+||+||.+++.|+|+ +.||.+|.+||.|-+..++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~-E~gP~vYk~DpAGyy~g~k 164 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDE-ERGPSVYKTDPAGYYYGFK 164 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEecc-ccCcceEeecCccccccce
Confidence 999999999999999999999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred EEEEcCCcHhHHHHHHhhccCC--Cc-HHHHHHHHHHHhhc
Q 029111 160 ANATGRNSNSIREFLEKNYKET--SG-QETVKLAIRALLEV 197 (199)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~~--~s-~ea~~l~~~~l~~~ 197 (199)
+++.|.....+..+|||+|+++ ++ +|++++++.||..+
T Consensus 165 AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~s 205 (246)
T KOG0182|consen 165 ATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSS 205 (246)
T ss_pred eeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 78 99999999999764
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-50 Score=305.76 Aligned_cols=193 Identities=42% Similarity=0.678 Sum_probs=184.5
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
.||.-.|+||||||++|+|||++++.+.+|+|||-.+||||||++++.+++|.+ +...+||++|+|||+|+.+|+.+|+
T Consensus 4 ~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DA 83 (249)
T KOG0178|consen 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDA 83 (249)
T ss_pred CcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccH
Confidence 489999999999999999999999999999999999999999999999997764 4578999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
..|++.+|..++.|.+.+|+++|.+.|++.|+++.|.|||+++.||||||++-+|||. ..|.+||+.||+|++..|++.
T Consensus 84 nvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~-~~gyqLy~SdPSGny~gWka~ 162 (249)
T KOG0178|consen 84 NVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDD-RYGYQLYQSDPSGNYGGWKAT 162 (249)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceec-CcceEEEecCCCCCcccccee
Confidence 9999999999999999999999999999999999999999999999999999999997 778999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccCCC-c-HHHHHHHHHHHhh
Q 029111 162 ATGRNSNSIREFLEKNYKETS-G-QETVKLAIRALLE 196 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~~-s-~ea~~l~~~~l~~ 196 (199)
++|.++..++..|+..|+++. + +||..++++.|-.
T Consensus 163 ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~k 199 (249)
T KOG0178|consen 163 CIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSK 199 (249)
T ss_pred eeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHh
Confidence 999999999999999999875 5 9999999998864
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-45 Score=284.25 Aligned_cols=192 Identities=40% Similarity=0.618 Sum_probs=182.3
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
..||.+.|+|||+||++|+|||++|++.|++.||+|.++-.||++-++..+.| ++.++|||+|++|+++.++|+++|+
T Consensus 4 nqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt~Da 81 (264)
T KOG0863|consen 4 NQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL--SSHQKKIFKIDDHIGISIAGLTADA 81 (264)
T ss_pred ccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH--HHhhheeEecccccceEEeccCcch
Confidence 35999999999999999999999999999999999999999999999887765 3467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.|.++++.+|..+++.+++++++.-+...|.+.+|..||+.+.|||||.++|+||| +.||+||++.|+|++.+++..
T Consensus 82 rvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYD--e~G~hl~e~~Psg~v~e~~g~ 159 (264)
T KOG0863|consen 82 RVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYD--ESGPHLYEFCPSGNVFECKGM 159 (264)
T ss_pred HHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeec--CCCceeEEEcCCccEEEEeee
Confidence 999999999999999999999999999999999999999999999999999999999 689999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhcc--CCCc-HHHHHHHHHHHhhc
Q 029111 162 ATGRNSNSIREFLEKNYK--ETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~--~~~s-~ea~~l~~~~l~~~ 197 (199)
++|+.++.++++||++.. ++++ ||.+..++.||++.
T Consensus 160 sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~t 198 (264)
T KOG0863|consen 160 SIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRET 198 (264)
T ss_pred ecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 999999999999999776 5889 99999999999864
No 21
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-43 Score=279.38 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=156.7
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++ .++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7999999999999999999976 667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++++|.|++. + |||++++||+|||+ +++|+||++||+|++.+++++++|+|+.+++++||+.|+++|| +||++
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~ 158 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDK-VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE 158 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcC-CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence 9999999988754 3 89999999999996 6899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhcc
Q 029111 189 LAIRALLEVS 198 (199)
Q Consensus 189 l~~~~l~~~~ 198 (199)
++.+|++++.
T Consensus 159 l~~~a~~~~~ 168 (193)
T cd03758 159 LMKKCIKELK 168 (193)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.7e-44 Score=280.57 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=157.1
Q ss_pred cCCcEEEEEeCCEEEEEEeccCc-ccccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHH-HhhhhcCCCCCHH
Q 029111 29 KGNAAVGVRGTDIVVLGVEKKSA-VKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQ-SHRLTVEDPVTVE 106 (199)
Q Consensus 29 ~g~t~vgi~~~dgVvla~d~~~~-~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 106 (199)
+|+|+|||+++||||||+|++.+ ..++.+++.+|||+|++|++++++|..+|++.+++++|.+++ .+++.++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 58999999999999999999998 478888889999999999999999999999999999999987 4667899999999
Q ss_pred HHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccC--CCc-
Q 029111 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE--TSG- 183 (199)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s- 183 (199)
.+++++++++ |++++++|||++++||||||+ +++|+||++||+|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ 157 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTE 157 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCH
Confidence 9999999986 778888999999999999995 5899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcc
Q 029111 184 QETVKLAIRALLEVS 198 (199)
Q Consensus 184 ~ea~~l~~~~l~~~~ 198 (199)
+||++++.+||+.+.
T Consensus 158 eea~~l~~~~l~~~~ 172 (197)
T cd03760 158 EEARALIEECMKVLY 172 (197)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 23
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=279.54 Aligned_cols=165 Identities=23% Similarity=0.364 Sum_probs=154.1
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 029111 29 KGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEY 107 (199)
Q Consensus 29 ~g~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (199)
+|+|+|||+++||||||+|++.+++++. .++.+|||+|++|++++++|..+|++.++++++.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887654 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee-EEEEcCCcHhHHHHHHhhccCCCc-HH
Q 029111 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKNYKETSG-QE 185 (199)
Q Consensus 108 la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s-~e 185 (199)
++++|++.+ |++ +.+||++++||+|||+ +++|+||++||+|++.+++ ++|+|+|++.++++||+.|+++|| +|
T Consensus 82 la~~l~~~l--y~~--r~~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 156 (195)
T cd03759 82 FSSLISSLL--YEK--RFGPYFVEPVVAGLDP-DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDE 156 (195)
T ss_pred HHHHHHHHH--HHh--cCCCceEEEEEEEEcC-CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHH
Confidence 999999998 444 3689999999999997 6789999999999998887 999999999999999999999999 99
Q ss_pred HHHHHHHHHhhcc
Q 029111 186 TVKLAIRALLEVS 198 (199)
Q Consensus 186 a~~l~~~~l~~~~ 198 (199)
|++++++||+++.
T Consensus 157 a~~l~~~~l~~~~ 169 (195)
T cd03759 157 LFETISQALLSAV 169 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999764
No 24
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=6.7e-43 Score=280.83 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=160.6
Q ss_pred CCCCcchh-hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHHHHHHHHH
Q 029111 12 SPDGHLFQ-VEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARI 90 (199)
Q Consensus 12 ~peG~i~q-~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 90 (199)
+||--+-| -|||++|+++|+|+|||+++||||||+|++. ++.+||++|++||+|+++|+.+|++.+++.++.
T Consensus 8 ~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~ 80 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIR 80 (228)
T ss_pred CHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHH
Confidence 44443333 4999999999999999999999999999972 357899999999999999999999999999999
Q ss_pred HHHHhhhhcC-CCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee-EEEEcCCcH
Q 029111 91 ECQSHRLTVE-DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSN 168 (199)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~-~~a~G~g~~ 168 (199)
+++.|++.++ .+++++.+++.++..++.++ +++.|||+|++||+|||+++.||+||.+||+|++.+++ ++|+|+|++
T Consensus 81 ~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~ 159 (228)
T TIGR03691 81 YADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTE 159 (228)
T ss_pred HHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChH
Confidence 9999999998 68999999998888877666 56789999999999998434789999999999999976 899999999
Q ss_pred hHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 169 SIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 169 ~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
.++++||+.|+++|| +||++++.+||+++
T Consensus 160 ~a~~~Lek~y~~~ms~eeai~la~~aL~~~ 189 (228)
T TIGR03691 160 PIATALKESYRDGLSLADALGLAVQALRAG 189 (228)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999876
No 25
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=6.2e-43 Score=280.13 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=157.8
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 029111 29 KGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEY 107 (199)
Q Consensus 29 ~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (199)
+|+|+|||+++||||||+|++.++ +++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999997 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCC-CeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HH
Q 029111 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSG-TFSAWKANATGRNSNSIREFLEKNYKETSG-QE 185 (199)
Q Consensus 108 la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~e 185 (199)
++++|++++|.++ ...+|||++++||+|||+++++|+||++||+| ++..++++++|+|++.++++||+.|+++|| +|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999998877 44689999999999999623689999999999 577779999999999999999999999999 99
Q ss_pred HHHHHHHHHhhc
Q 029111 186 TVKLAIRALLEV 197 (199)
Q Consensus 186 a~~l~~~~l~~~ 197 (199)
|++++.+||+++
T Consensus 160 ai~l~~~al~~~ 171 (219)
T TIGR03690 160 ALRVAVEALYDA 171 (219)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 26
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-42 Score=272.89 Aligned_cols=162 Identities=20% Similarity=0.311 Sum_probs=154.2
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++++++|..+|++.|++++|.+++.|++.+|++|+++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999988 677778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++++|.+++ .||++++||+||| ++||+||++||+|++.+++++++|+|+++++++||+.|+++|| +||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D--~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWD--KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEe--CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 999999998754 4899999999999 5789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhcc
Q 029111 189 LAIRALLEVS 198 (199)
Q Consensus 189 l~~~~l~~~~ 198 (199)
++.+||+++.
T Consensus 155 l~~~~l~~~~ 164 (188)
T cd03761 155 LARRAIYHAT 164 (188)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 27
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.5e-42 Score=269.09 Aligned_cols=163 Identities=29% Similarity=0.450 Sum_probs=155.1
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+..++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999985 77778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
+++|++.+|.+ ++|||++++||+|||+ +||+||.+||+|++.+++++++|.|+.+++++||+.|+++|| +||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~--~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE--EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC--CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 99999999765 5899999999999994 689999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhcc
Q 029111 188 KLAIRALLEVS 198 (199)
Q Consensus 188 ~l~~~~l~~~~ 198 (199)
+++++||+++.
T Consensus 155 ~l~~~~l~~~~ 165 (185)
T TIGR03634 155 KLAVRAIKSAI 165 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.4e-42 Score=273.99 Aligned_cols=167 Identities=20% Similarity=0.345 Sum_probs=155.4
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccc-cccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~~l-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (199)
+++|+|+|||+++||||||+|++.++++ +..++.+||++|++|++++++|..+|++.+.+.++.+++.|++++|+++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 4689999999999999999999998855 456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhcc------
Q 029111 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK------ 179 (199)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------ 179 (199)
+.++++++++++ .+ +.|||++++||||||+ +++|+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly--~~--R~~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 85 EAIAQLLSTILY--SR--RFFPYYVFNILAGIDE-EGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred HHHHHHHHHHHH--hh--cCCCeEEEEEEEEEcC-CCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc
Confidence 999999999995 33 3579999999999996 678999999999999999999999999999999999985
Q ss_pred ---CCCc-HHHHHHHHHHHhhcc
Q 029111 180 ---ETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 180 ---~~~s-~ea~~l~~~~l~~~~ 198 (199)
++|| +||++++.+||+++.
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~ 182 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAA 182 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 8999 999999999998764
No 29
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=8.1e-42 Score=267.47 Aligned_cols=170 Identities=39% Similarity=0.657 Sum_probs=160.8
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcc--cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAV--KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~--~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 104 (199)
|++|+|+|||+++||||||+|++.+. .+..+++.+||++|++|++++++|..+|++.+.++++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999983 4445555799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee-eEEEEcCCcHhHHHHHHhhccCCCc
Q 029111 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG 183 (199)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s 183 (199)
++.+++.+++.++.++++.++||+++++|++|||+ +++|+||.+||+|++.++ +++++|+|+++++++||+.|+++|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~ 159 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDE-DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLS 159 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEET-TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeecc-ccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCC
Confidence 99999999999999999989999999999999996 677999999999999999 6999999999999999999999999
Q ss_pred -HHHHHHHHHHHhhc
Q 029111 184 -QETVKLAIRALLEV 197 (199)
Q Consensus 184 -~ea~~l~~~~l~~~ 197 (199)
+||++++++||+++
T Consensus 160 ~~ea~~~~~~~l~~~ 174 (190)
T PF00227_consen 160 LEEAIELALKALKEA 174 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 99999999999975
No 30
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.3e-41 Score=262.67 Aligned_cols=162 Identities=20% Similarity=0.306 Sum_probs=153.5
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999987 677777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++++|.++ |||++++||+|+|+ +++|+||.+||.|++.+++++++|+|+.+++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~ 154 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIK 154 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcC-CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999997653 68999999999996 6789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhcc
Q 029111 189 LAIRALLEVS 198 (199)
Q Consensus 189 l~~~~l~~~~ 198 (199)
++++||+.+.
T Consensus 155 l~~~al~~~~ 164 (188)
T cd03762 155 FVKNALSLAM 164 (188)
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-41 Score=262.36 Aligned_cols=161 Identities=32% Similarity=0.446 Sum_probs=153.6
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999987 777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.+|.+ ++|||++++||||+| +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d--~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVD--EEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEe--CCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999764 479999999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 155 l~~~~l~~~ 163 (188)
T cd03764 155 LAIRAIKSA 163 (188)
T ss_pred HHHHHHHHH
Confidence 999999865
No 32
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-41 Score=270.13 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=151.1
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccccccccceEEec----CCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCC-CCCH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLD----NHIALACAGLKADARVLVNRARIECQSHRLTVED-PVTV 105 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~ 105 (199)
+.+|||+++||||||+|+|++++++..++.+||++|+ +||+|+.||..+|++.+++++|.+++.|++.+|+ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4689999999999999999988877666899999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHH-HhcccCC-----CcccccceeeeeeeCCCCCceEEEECCCCCeeee----eEEEEcCCcHhHHHHHH
Q 029111 106 EYITRYIAGLQQ-KYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW----KANATGRNSNSIREFLE 175 (199)
Q Consensus 106 ~~la~~ls~~~~-~~~~~~~-----~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~----~~~a~G~g~~~~~~~Le 175 (199)
+.+|+++++.++ .+++..+ .|||++++||+|||+ ++||+||++||+|++.++ +|+|+|. +.+++++||
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999854 4555543 489999999999996 678999999999999998 6689995 699999999
Q ss_pred hhccCCCc-HHHHHHHHHHHhhc
Q 029111 176 KNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 176 ~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+.|+++|| +||++++++||+++
T Consensus 159 k~yk~~ms~eeai~la~~al~~a 181 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDST 181 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHH
Confidence 99999999 99999999999875
No 33
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=6.3e-41 Score=272.35 Aligned_cols=167 Identities=19% Similarity=0.302 Sum_probs=154.1
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 029111 26 AVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (199)
Q Consensus 26 av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 104 (199)
.+++|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++++|++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999985 7778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-
Q 029111 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG- 183 (199)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s- 183 (199)
++.++++|++++|.+ +..|+.+++||+||| ++||+||++||+|++.+++++++|+|+..++++||+.|+++||
T Consensus 115 v~~la~~ls~~l~~~----R~~~~~v~~iiaG~D--~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~ 188 (247)
T PTZ00488 115 VAAASKILANIVWNY----KGMGLSMGTMICGWD--KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLND 188 (247)
T ss_pred HHHHHHHHHHHHHhc----CCCCeeEEEEEEEEe--CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCH
Confidence 999999999999754 112444558999999 4679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029111 184 QETVKLAIRALLEVS 198 (199)
Q Consensus 184 ~ea~~l~~~~l~~~~ 198 (199)
+||++++++||+++.
T Consensus 189 eEai~l~~kal~~~~ 203 (247)
T PTZ00488 189 EEAQDLGRRAIYHAT 203 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 34
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.1e-40 Score=257.84 Aligned_cols=164 Identities=43% Similarity=0.649 Sum_probs=156.2
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|++.++.+.. +++.+|||+|+++++++++|..+|++.+.+.++.++..|+..++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999875544 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.+|.++++ .|||++++||+|+|+ +++|+||.+||+|++.+++++++|.|+..++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 157 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIE 157 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeC-CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHH
Confidence 9999999999875 899999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 158 l~~~~l~~~ 166 (182)
T cd01906 158 LALKALKSA 166 (182)
T ss_pred HHHHHHHHH
Confidence 999999865
No 35
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-40 Score=261.17 Aligned_cols=160 Identities=24% Similarity=0.276 Sum_probs=151.5
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++ .++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999988 566777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.+|.|. .||++++|||||| ++||+||.+||.|++.+++++++|+++..++++||+.|+|+|| +||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d--~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVD--YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEc--CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999998653 2999999999999 4679999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 154 l~~~~l~~~ 162 (189)
T cd03763 154 LVCEAIEAG 162 (189)
T ss_pred HHHHHHHHH
Confidence 999999865
No 36
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-40 Score=258.35 Aligned_cols=162 Identities=27% Similarity=0.379 Sum_probs=153.5
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|++.++.+.. .++.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999886544 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.++.+++ |||++++||+|+|+ +++|+||.+||+|++.+++++++|.++++++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~ 155 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDK-GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVE 155 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcC-CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHH
Confidence 999999987664 89999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++.+||+.+
T Consensus 156 ~~~~~l~~~ 164 (189)
T cd01912 156 LVKKAIDSA 164 (189)
T ss_pred HHHHHHHHH
Confidence 999999864
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-36 Score=227.07 Aligned_cols=166 Identities=22% Similarity=0.312 Sum_probs=157.0
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
+.+++||++.|+|++|+||.... .++.+++.+|++.+++++.|+++|..+|+..+.+++.+.++.|+.++|.+++|+..
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 35899999999999999999876 56678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
|++.++.+..+.++ .+||.|+++|||+|+ +.||.||++|..|+..+.+|++.|.++.++.++|++.|+|+|| +||+
T Consensus 81 ahFtR~~La~~LRs--r~~yqV~~LvaGYd~-~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~ 157 (200)
T KOG0177|consen 81 AHFTRRELAESLRS--RTPYQVNILVAGYDP-EEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL 157 (200)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEEEeccCC-CCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence 99999999999863 579999999999999 6779999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhcc
Q 029111 188 KLAIRALLEVS 198 (199)
Q Consensus 188 ~l~~~~l~~~~ 198 (199)
++..+|+.|.+
T Consensus 158 ~lmkKCv~El~ 168 (200)
T KOG0177|consen 158 DLMKKCVLELK 168 (200)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 38
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-33 Score=219.04 Aligned_cols=165 Identities=24% Similarity=0.326 Sum_probs=154.8
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCC
Q 029111 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPV 103 (199)
Q Consensus 25 ~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 103 (199)
++.+.|+|++||.++||||+++|+|++. +++..++++||+.|.++|+|+.+|-++|...+...+..+.++|.+..++.+
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 4557899999999999999999999997 777889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc
Q 029111 104 TVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG 183 (199)
Q Consensus 104 ~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 183 (199)
++-..-++|.+.+..|.. .+++.+||+|+| ..|||||.+.|.|+....+|.++|+|+..|+++||.+|+|||+
T Consensus 112 rVv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD--~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt 184 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQG-----HIGAALILGGVD--PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLT 184 (271)
T ss_pred ceeeHHHHHHHHHHHhcC-----cccceeEEcccc--CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccC
Confidence 998888899999987764 479999999999 5899999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHhh
Q 029111 184 -QETVKLAIRALLE 196 (199)
Q Consensus 184 -~ea~~l~~~~l~~ 196 (199)
|||++|+.+|+..
T Consensus 185 ~eea~~Lv~eAi~A 198 (271)
T KOG0173|consen 185 KEEAIKLVCEAIAA 198 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 9999999999874
No 39
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-33 Score=217.40 Aligned_cols=188 Identities=19% Similarity=0.255 Sum_probs=166.8
Q ss_pred ccccCCCCcchhh------hhHHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhh
Q 029111 8 ITVFSPDGHLFQV------EYALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 8 ~~~f~peG~i~q~------eya~~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
+++|.|.|..... ..-+.+.-+|+++||+|++||||+|+|+..++ ++...++++|+++++||+.+|++|..+|
T Consensus 13 ~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD 92 (256)
T KOG0185|consen 13 PGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISD 92 (256)
T ss_pred CCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHH
Confidence 5678888653322 11234556899999999999999999999998 7888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee
Q 029111 81 ARVLVNRARIECQSHR-LTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~ 159 (199)
+|.+.+.+.+...+.+ +..|+.+.|+.++++|++++ |.+++++.|++..++|+|+|. ++.|.|..+|-.|..++.+
T Consensus 93 ~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y~~~ 169 (256)
T KOG0185|consen 93 FQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAYESP 169 (256)
T ss_pred HHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecC-CCCeeEEEEeeccccccCc
Confidence 9999999988877754 56679999999999999999 678889999999999999996 6899999999999999999
Q ss_pred EEEEcCCcHhHHHHHHhhcc---CCCc-HHHHHHHHHHHhhcc
Q 029111 160 ANATGRNSNSIREFLEKNYK---ETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~---~~~s-~ea~~l~~~~l~~~~ 198 (199)
..|+|.|..+|.++|++.|. ++++ +||.+++.+||+-.+
T Consensus 170 ~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~ 212 (256)
T KOG0185|consen 170 VVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLY 212 (256)
T ss_pred hhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 5789 999999999998543
No 40
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=218.99 Aligned_cols=165 Identities=21% Similarity=0.352 Sum_probs=156.5
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (199)
..+|+|.+|++++.|||+|+|+|++. .++.+..++||.+|+++..-.++|-++||+++-+.+.++|++|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 36899999999999999999999998 78888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-H
Q 029111 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-Q 184 (199)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ 184 (199)
...++.|++++++|... -+.+..+|+||| +.||.||+||..|+-...+-+++|+|+.+|.++|+..|++||+ |
T Consensus 148 saASKllsN~~y~YkGm----GLsmGtMi~G~D--k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGM----GLSMGTMIAGWD--KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhccCc----chhheeeEeecc--CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHH
Confidence 99999999999877632 378899999999 6999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhhc
Q 029111 185 ETVKLAIRALLEV 197 (199)
Q Consensus 185 ea~~l~~~~l~~~ 197 (199)
||.+|+++++.+|
T Consensus 222 EA~~L~rrAI~hA 234 (285)
T KOG0175|consen 222 EAYDLARRAIYHA 234 (285)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 41
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=100.00 E-value=7.9e-31 Score=198.48 Aligned_cols=161 Identities=39% Similarity=0.515 Sum_probs=152.5
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||+|+|++.+..+.. ..+.+|++.++++++++++|..+|++.+.++++.+++.|+..++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999875544 66899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee-eEEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
+.+++.++.+++ .||+++++||+|+| +++|+||.+||.|++.+. +++++|.++..+.++|++.|+++++ +|++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~--~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVD--EGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEc--CCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 999999998886 79999999999999 488999999999999999 9999999999999999999999999 9999
Q ss_pred HHHHHHHhh
Q 029111 188 KLAIRALLE 196 (199)
Q Consensus 188 ~l~~~~l~~ 196 (199)
+++.+||+.
T Consensus 156 ~~~~~~l~~ 164 (164)
T cd01901 156 ELALKALKS 164 (164)
T ss_pred HHHHHHHhC
Confidence 999999863
No 42
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-31 Score=202.55 Aligned_cols=165 Identities=19% Similarity=0.352 Sum_probs=153.0
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 029111 28 RKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (199)
Q Consensus 28 ~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (199)
.||+|+|||.+.|+.|+|+|||.++ ..+.++..+|||+++|+++++.+|.++|+..|...++.+.+.|+..+++.|++.
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~ 106 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIH 106 (235)
T ss_pred cCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHH
Confidence 6899999999999999999999987 446788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhcc-------
Q 029111 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK------- 179 (199)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~------- 179 (199)
.+|++|+..++ . .++.|+.+..||+|+|+ ++++.+|+.||.|++.+.-+.|.|+++..++|+|+....
T Consensus 107 s~A~lls~~LY--~--kRFFPYYv~~ilaGiDe-eGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 107 SAAQLLSTILY--S--KRFFPYYVFNILAGIDE-EGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHh--h--cccccceeeeeeecccc-cCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 99999999994 3 36899999999999997 899999999999999999999999999999999997442
Q ss_pred ----CCCc-HHHHHHHHHHHhhc
Q 029111 180 ----ETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 180 ----~~~s-~ea~~l~~~~l~~~ 197 (199)
+.|| |||+.|+.++|..|
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SA 204 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSA 204 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhh
Confidence 3589 99999999998754
No 43
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=201.64 Aligned_cols=166 Identities=17% Similarity=0.284 Sum_probs=154.8
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 029111 26 AVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (199)
Q Consensus 26 av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 104 (199)
.+..|+|++|+++++||||++|+|++. .++.++-.+|+.+|+|+|+|+-||.++|.|.+.+.++.....|...++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 478999999999999999999999987 6677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-
Q 029111 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG- 183 (199)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s- 183 (199)
+...|+.+++++++|.. -|...+||||||+ ..|.++|.+---|+..+-+++.-|+|+.+++++++.+|||+|+
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~-~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDE-KEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeeccc-ccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 99999999999976543 4889999999998 8899999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029111 184 QETVKLAIRALLEV 197 (199)
Q Consensus 184 ~ea~~l~~~~l~~~ 197 (199)
||++++..+|+..+
T Consensus 169 EE~~~fvk~Av~lA 182 (224)
T KOG0174|consen 169 EECVRFVKNAVSLA 182 (224)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998654
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=2.2e-30 Score=199.52 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=129.5
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEe-cCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEY 107 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (199)
|+|+|||+++||||||+|+|++. .++.+++.+||++| ++|++|+++|..+|+|.|.+.++.+++.|+.. . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~--~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN--L---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc--c---HHH
Confidence 78999999999999999999986 67788899999999 99999999999999999999999999999832 1 455
Q ss_pred HHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee--eEEEEcCCcHhHHHHHHhhcc-CCCcH
Q 029111 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYK-ETSGQ 184 (199)
Q Consensus 108 la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~ 184 (199)
.++.+..+.. ....+|+.+++||+ |+ |+||.+||.|+..+. +++++|+|+.+++++||+.|+ |+|
T Consensus 76 ~a~l~~~l~~----~~~~~~l~~~~lv~--d~----~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-- 143 (172)
T PRK05456 76 AVELAKDWRT----DRYLRRLEAMLIVA--DK----EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL-- 143 (172)
T ss_pred HHHHHHHHHh----ccCCCccEEEEEEE--cC----CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC--
Confidence 5554433321 11236888998884 52 699999999999666 899999999999999999999 999
Q ss_pred HHHHHHHHHHhhcc
Q 029111 185 ETVKLAIRALLEVS 198 (199)
Q Consensus 185 ea~~l~~~~l~~~~ 198 (199)
||++++++|+++++
T Consensus 144 eA~~la~kai~~A~ 157 (172)
T PRK05456 144 SAEEIAEKALKIAA 157 (172)
T ss_pred CHHHHHHHHHHHHH
Confidence 79999999998764
No 45
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-29 Score=188.29 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=152.9
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 029111 28 RKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (199)
Q Consensus 28 ~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (199)
-+|+++||+++||||.+|+|.|... .....++.+|||+++|+.++|.+|++.|++.+.++++...+.|+++.++.+.|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4899999999999999999999986 334567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeee-eeEEEEcCCcHhHHHHHHhhccCCCc-H
Q 029111 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA-WKANATGRNSNSIREFLEKNYKETSG-Q 184 (199)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s-~ 184 (199)
.+++++|..+++ . ++-||.+..+|||+|+ +++|.|..+|..|+... .++.+.|.+++...+.+|..|+|+|. |
T Consensus 86 ~~s~mvS~~lYe--k--RfgpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 86 TFSSMVSSLLYE--K--RFGPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred HHHHHHHHHHHH--h--hcCCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 999999999953 2 4669999999999998 89999999999999954 49999999999999999999999999 9
Q ss_pred HHHHHHHHHHhhc
Q 029111 185 ETVKLAIRALLEV 197 (199)
Q Consensus 185 ea~~l~~~~l~~~ 197 (199)
|.++.+.++|.++
T Consensus 161 ~LFetisQa~Lna 173 (204)
T KOG0180|consen 161 ELFETISQALLNA 173 (204)
T ss_pred HHHHHHHHHHHhH
Confidence 9999999998765
No 46
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=7.3e-29 Score=189.96 Aligned_cols=149 Identities=15% Similarity=0.060 Sum_probs=123.5
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecC-CEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDN-HIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
+|+|||+++||||||+|+|++. .++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999986 6778889999999999 999999999999999999999999999987764 33
Q ss_pred HHHHHHHHHHhcccCCCcccc-cceeeeeeeCCCCCceEEEECCCCCeeeee--EEEEcCCcHhHHHHHHhhccCC-CcH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFG-LSTLIVGFDPYTGVPSLYQTDPSGTFSAWK--ANATGRNSNSIREFLEKNYKET-SGQ 184 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~-~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~~~-~s~ 184 (199)
++.+..++ .| +.+|+. +.+|++++ ++||.+||.|+..+.+ +.++|+|+.+++++||..|+++ ||
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~------~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK------EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC------CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC-
Confidence 44433332 11 344554 55555533 3899999999999984 9999999999999999999995 99
Q ss_pred HHHHHHHHHHhhc
Q 029111 185 ETVKLAIRALLEV 197 (199)
Q Consensus 185 ea~~l~~~~l~~~ 197 (199)
+.+++.+|++.|
T Consensus 144 -~~~la~~Av~~A 155 (171)
T cd01913 144 -AEEIARKALKIA 155 (171)
T ss_pred -HHHHHHHHHHHH
Confidence 338888887765
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=3.6e-28 Score=186.11 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=123.4
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEe-cCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
+|+|||+++||||||+|+|++. .++.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+.+. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999986 67788899999999 599999999999999999999999999998643 3555
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee--eEEEEcCCcHhHHHHHHhhcc-CCCcHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYK-ETSGQE 185 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s~e 185 (199)
++.++.+. .+...+.+.+.+|++|+ ++||.+||.|...+. ++.++|+|+.+++++||..|+ ++|+
T Consensus 76 a~l~~~~~----~~~~~~~l~a~~iv~~~------~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s-- 143 (171)
T TIGR03692 76 VELAKDWR----TDRYLRRLEAMLIVADK------ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS-- 143 (171)
T ss_pred HHHHHHHh----hcccccccEEEEEEEcC------CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC--
Confidence 55555421 11112234466666543 389999999999996 699999999999999999995 5666
Q ss_pred HHHHHHHHHhhcc
Q 029111 186 TVKLAIRALLEVS 198 (199)
Q Consensus 186 a~~l~~~~l~~~~ 198 (199)
|++++.++++.|+
T Consensus 144 a~~la~~Av~~A~ 156 (171)
T TIGR03692 144 AEEIAREALKIAA 156 (171)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999987653
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.51 E-value=9.5e-15 Score=74.04 Aligned_cols=23 Identities=78% Similarity=1.314 Sum_probs=22.3
Q ss_pred CCCCccccCCCCcchhhhhHHHH
Q 029111 4 YDRAITVFSPDGHLFQVEYALEA 26 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya~~a 26 (199)
||+++|+|||||||+|+|||.||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999986
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9e-13 Score=101.57 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=125.3
Q ss_pred CCcEEEEEeCCEEEEEEeccCcccccccccccceEEec---C-CEEEEEeecHhhHHHHHHHHHHHHHHhhh-hcCCCCC
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLD---N-HIALACAGLKADARVLVNRARIECQSHRL-TVEDPVT 104 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~---~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 104 (199)
++.|||++.+.|.|+++|+|++-.+-..+..+|+|..+ + -++++.+|+.+-.|.+++.+.+..+...- .--.-++
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 47899999999999999999876655456778887663 2 36778999999999999999877752211 1112345
Q ss_pred HHHHHHHHHHHHHHhcccC------CCcccccceeeeeeeCCCCCceEEEECCCCCeeee----eEEEEcCCcHhHHHHH
Q 029111 105 VEYITRYIAGLQQKYTQSG------GVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW----KANATGRNSNSIREFL 174 (199)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~------~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~----~~~a~G~g~~~~~~~L 174 (199)
+-..+..+.+..++...+. ..--|.|++|++|.-. ...|.||.+.|.|++.+. +|..+|.. .+.+++|
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~-G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPil 158 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIK-GEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPIL 158 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceec-CCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhh
Confidence 6666777776655443321 1235899999999986 566899999999999876 89999976 8999999
Q ss_pred HhhccCCCc-HHHHHHHHHHH
Q 029111 175 EKNYKETSG-QETVKLAIRAL 194 (199)
Q Consensus 175 e~~~~~~~s-~ea~~l~~~~l 194 (199)
++.+..+++ +|+.+.+.-++
T Consensus 159 dR~i~~~~pLeea~kcaLvS~ 179 (255)
T COG3484 159 DRTITYDTPLEEAAKCALVSF 179 (255)
T ss_pred hhhhhccCCHHHHhhheEEec
Confidence 999999999 99998876544
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.9e-11 Score=88.92 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=109.2
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecC-CEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHH
Q 029111 29 KGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDN-HIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (199)
Q Consensus 29 ~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (199)
+++|+|+++-++=|+++.|...+- ..+...+.+|+.+|.+ ++..+++|..+|+.+|.+.++.++++|.-+
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~-------- 74 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD-------- 74 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc--------
Confidence 589999999999999999998875 4556667777766654 899999999999999999999999988621
Q ss_pred HHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee--eEEEEcCCcHhHHHHHHhhcc-CCCc
Q 029111 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYK-ETSG 183 (199)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~s 183 (199)
|.+..-+..+.+.....+|.+-.-++|+-- -.++-+.-.|.+.+. +..++|+|..+|++--...++ +++|
T Consensus 75 -L~raavelaKdwr~Dk~lr~LEAmllVad~------~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls 147 (178)
T COG5405 75 -LFRAAVELAKDWRTDKYLRKLEAMLLVADK------THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS 147 (178)
T ss_pred -HHHHHHHHHHhhhhhhHHHHHhhheeEeCC------CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC
Confidence 112222222222222335566676677633 258888888888655 599999999999999888876 4888
Q ss_pred -HHHHHHHHHH
Q 029111 184 -QETVKLAIRA 193 (199)
Q Consensus 184 -~ea~~l~~~~ 193 (199)
+|..+.++++
T Consensus 148 A~eIa~~sl~i 158 (178)
T COG5405 148 AREIAEKSLKI 158 (178)
T ss_pred HHHHHHHHHhh
Confidence 5554444443
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=95.31 E-value=0.51 Score=36.87 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=27.0
Q ss_pred HhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 168 NSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+.+...|.+.|++.|+ +++.++..++|+++
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~ 161 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEV 161 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5677789999999999 99999999999876
No 52
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=81.97 E-value=3 Score=30.65 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred EEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 147 YQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 147 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
..+|-+|.+...+|-..|.|+..|-+-+-..|-..++ ||+.+
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHh
Confidence 4678899999999999999999999999999999999 88864
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.92 E-value=27 Score=28.58 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=26.3
Q ss_pred HhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 168 NSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+.+..+|.++|.+.++ +++.++.+.+|..+.
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vs 163 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVS 163 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhh
Confidence 4566778899999999 999999999998764
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.94 E-value=19 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.7
Q ss_pred cccCC-CCcchhhhhHHHHHhcCCcEEEEEeCC
Q 029111 9 TVFSP-DGHLFQVEYALEAVRKGNAAVGVRGTD 40 (199)
Q Consensus 9 ~~f~p-eG~i~q~eya~~av~~g~t~vgi~~~d 40 (199)
|.||+ +|.+.--++...+.++|-..+||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 56888 999999999999999999999998776
No 55
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=51.19 E-value=21 Score=28.61 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=33.7
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeC
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGT 39 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~ 39 (199)
|+-||.++.+ +|+|.----|++..|++.|=..||+...
T Consensus 1 ~m~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH 38 (237)
T PRK00912 1 MKFYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNH 38 (237)
T ss_pred CCceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecC
Confidence 7889999988 4889888889999999999999999755
No 56
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=50.88 E-value=13 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.9
Q ss_pred EcCCcHhHHHHHHhhc-cCCCc-HHHHHHHHH
Q 029111 163 TGRNSNSIREFLEKNY-KETSG-QETVKLAIR 192 (199)
Q Consensus 163 ~G~g~~~~~~~Le~~~-~~~~s-~ea~~l~~~ 192 (199)
.|.....+...+.+.. .++++ ++.++.+.+
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 4778888888888877 78899 887776654
No 57
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.97 E-value=37 Score=31.87 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=68.9
Q ss_pred EEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCC
Q 029111 73 ACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPS 152 (199)
Q Consensus 73 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~ 152 (199)
.-+|.++-+..|++.+. ..+.|+++++.+|.++.+-++|-.... -|.|..+++.+= -.||-||..|--
T Consensus 191 ~eAGRAaAc~sLcRIfc------SKksgEeIl~a~LS~FY~ll~Q~Lq~k----dyvchpmLasl~--ln~p~LFccdLk 258 (1215)
T KOG3652|consen 191 VEAGRAAACASLCRIFC------SKKSGEEILNAQLSNFYALLFQCLQEK----DYVCHPMLASLF--LNGPNLFCCDLK 258 (1215)
T ss_pred hhhhHHHHHHHHHHhhh------cccCcccccHHHHHHHHHHHHHHHhhc----ccccchhheeee--ecCCceeeecCC
Confidence 34565555555555432 246789999999999988888744332 355666666655 367899999998
Q ss_pred CCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhccC
Q 029111 153 GTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVSC 199 (199)
Q Consensus 153 G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~~ 199 (199)
|--.-.++...-..-...-..+-+.++.-.+ .|....++++|..+-|
T Consensus 259 GId~llP~Fi~ALd~il~dre~~rkfkS~~n~tElRRa~in~LlSli~ 306 (1215)
T KOG3652|consen 259 GIDSLLPHFIFALDIILIDREKLRKFKSISNETELRRACINALLSLIC 306 (1215)
T ss_pred chhHhhHHHHHHHHhhhccHHHhhhccccCCHHHHHHHHHHHHHHhcc
Confidence 8655444432211111122222223332233 7788888888876665
No 58
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=42.73 E-value=48 Score=19.84 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=26.7
Q ss_pred EEECCCCCeeeeeEEEEcCCcHhHHHHHHhhc
Q 029111 147 YQTDPSGTFSAWKANATGRNSNSIREFLEKNY 178 (199)
Q Consensus 147 y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 178 (199)
|.++|+|.+...---..|.....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999987777778888888888888755
No 59
>PRK07328 histidinol-phosphatase; Provisional
Probab=42.11 E-value=36 Score=27.86 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=31.9
Q ss_pred CCCCCCCc-cccCCCCcchhhhhHHHHHhcCCcEEEEEeC
Q 029111 1 MARYDRAI-TVFSPDGHLFQVEYALEAVRKGNAAVGVRGT 39 (199)
Q Consensus 1 ~~~yd~~~-~~f~peG~i~q~eya~~av~~g~t~vgi~~~ 39 (199)
||-.|.+. |.||++|.-.--||+.+|+..|=..+|+.-.
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecC
Confidence 56666655 4688898877779999999999999999855
No 60
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=41.82 E-value=19 Score=29.99 Aligned_cols=55 Identities=25% Similarity=0.368 Sum_probs=39.5
Q ss_pred eeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCC-cHhHHHHHHhhccC-CCc-HHHHHHH
Q 029111 133 LIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRN-SNSIREFLEKNYKE-TSG-QETVKLA 190 (199)
Q Consensus 133 iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g-~~~~~~~Le~~~~~-~~s-~ea~~l~ 190 (199)
=+.|.||..+.+-....-..|-+... ..|.. -...+.-|-+.|.+ ++| |+|++|.
T Consensus 76 r~LG~DP~tG~eI~~k~GryGPYVq~---~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LL 133 (298)
T COG1754 76 RVLGIDPETGEEIYLKNGRYGPYVQE---QLGDPKPKPKRASLPKGWKPETITLEKALKLL 133 (298)
T ss_pred cccccCCCCCceeEEeccCCCceeee---ecCCCCCCcccccCCCCCChhhCcHHHHHHHH
Confidence 45678985555666677777777654 56665 56667778888884 799 9999875
No 61
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=41.53 E-value=34 Score=26.39 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=25.5
Q ss_pred cCCCCcchhhhhH-HHHHhcCCcEEEEEeCCEEEEE
Q 029111 11 FSPDGHLFQVEYA-LEAVRKGNAAVGVRGTDIVVLG 45 (199)
Q Consensus 11 f~peG~i~q~eya-~~av~~g~t~vgi~~~dgVvla 45 (199)
+||.|+=.-+--| .+|..+|-++||+.++||=-++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 6777774444444 5566899999999999986553
No 62
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=41.04 E-value=46 Score=22.18 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=21.1
Q ss_pred HhHHHHHHhhccCCCc-HHHHHHHHHHHh---hccC
Q 029111 168 NSIREFLEKNYKETSG-QETVKLAIRALL---EVSC 199 (199)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~ea~~l~~~~l~---~~~~ 199 (199)
..++.+.+..|.+.++ ++.+++|.+.|. .++|
T Consensus 42 ~~Iq~If~~SF~e~~~~e~C~~iA~klL~ik~~~sc 77 (79)
T PF08958_consen 42 KKIQSIFEFSFGEWLPIEECEEIAEKLLAIKESSSC 77 (79)
T ss_dssp HHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHhHhhcCCC
Confidence 4556677788888889 999999988886 6665
No 63
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=39.91 E-value=2.2e+02 Score=23.67 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcccCCCccccc-ceeeeeeeCCCCCceE-EEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-
Q 029111 107 YITRYIAGLQQKYTQSGGVRPFGL-STLIVGFDPYTGVPSL-YQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG- 183 (199)
Q Consensus 107 ~la~~ls~~~~~~~~~~~~rp~~~-~~iv~G~d~~~~~p~L-y~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s- 183 (199)
.+-..+.+=..+=+....+||=.| ..+ -..+.-++.|.+ +.--..|...+..+.+-|.|++..-.+ +...|.-.
T Consensus 79 ~l~~ai~~gv~~a~~~~~LR~s~V~~pl-~r~Ntgdn~P~ii~~~~v~gd~l~i~~~~KGgGsEn~s~l--~ml~p~~g~ 155 (271)
T PF05681_consen 79 DLEEAINEGVRKAYKEGPLRPSVVSDPL-TRKNTGDNTPAIIHIEIVPGDKLEITVLPKGGGSENMSAL--KMLNPSDGI 155 (271)
T ss_pred hHHHHHHHHHHHHHhcCCCCccccCCcc-ccccCCCCCCceEEEEEcCCCEEEEEEEecCCCcccHhhh--hccCccccH
Confidence 344444443333333456777777 434 666653466877 444456788999999999998876555 44456655
Q ss_pred HHHHHHHHHHHhhc
Q 029111 184 QETVKLAIRALLEV 197 (199)
Q Consensus 184 ~ea~~l~~~~l~~~ 197 (199)
+..++.+++.+.++
T Consensus 156 e~v~~fV~d~v~~a 169 (271)
T PF05681_consen 156 EGVKKFVLDTVKKA 169 (271)
T ss_pred HHHHHHHHHHHHhc
Confidence 66677777766543
No 64
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=37.95 E-value=59 Score=20.80 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q 029111 85 VNRARIECQSHRLTVEDPVTVEYITRYIA 113 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls 113 (199)
+.++++.........|+.|+.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 34555555566677899999999998765
No 65
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=37.50 E-value=40 Score=26.50 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeee
Q 029111 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFD 138 (199)
Q Consensus 102 ~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d 138 (199)
.-+|++.+.-|+++++.|.++++.+.+ +|+||.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRV----VLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeec
Confidence 447899999999999999998765543 778885
No 66
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.54 E-value=46 Score=29.34 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=61.6
Q ss_pred cCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCC-CCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeC------
Q 029111 67 DNHIALACAGLKADARVLVNRARIECQSHRLTVEDP-VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDP------ 139 (199)
Q Consensus 67 ~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~-~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~------ 139 (199)
.|-|+++-+|..--..+++-.+....++.+.-+.-- .|.++||..++.......+..+ +-+..|++|.|-
T Consensus 99 ~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~ 175 (476)
T KOG0330|consen 99 RDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQ 175 (476)
T ss_pred CcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEEecCchHHHHHHH
Confidence 455788889998888888888877666544433322 3668999999999988877665 458889999983
Q ss_pred CCCCceEEEECCCCCeeee
Q 029111 140 YTGVPSLYQTDPSGTFSAW 158 (199)
Q Consensus 140 ~~~~p~Ly~vd~~G~~~~~ 158 (199)
-...|++.. -.-|..+..
T Consensus 176 L~kkPhilV-aTPGrL~dh 193 (476)
T KOG0330|consen 176 LSKKPHILV-ATPGRLWDH 193 (476)
T ss_pred hhcCCCEEE-eCcHHHHHH
Confidence 135788844 344555433
No 67
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=31.45 E-value=56 Score=24.02 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=26.7
Q ss_pred cccC-CCCcchhhhhHHHHHhcCCcEEEEEeC
Q 029111 9 TVFS-PDGHLFQVEYALEAVRKGNAAVGVRGT 39 (199)
Q Consensus 9 ~~f~-peG~i~q~eya~~av~~g~t~vgi~~~ 39 (199)
|.|| .+|...--||...|.+.|=+.|||+-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4577 799999999999999999999999765
No 68
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=30.66 E-value=74 Score=16.93 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=17.1
Q ss_pred cceeeeeeeCCCCCceEEEECCCCC
Q 029111 130 LSTLIVGFDPYTGVPSLYQTDPSGT 154 (199)
Q Consensus 130 ~~~iv~G~d~~~~~p~Ly~vd~~G~ 154 (199)
.+..|.|.-+ +.|.||.+-.+|.
T Consensus 4 N~~~v~G~rP--g~pfl~~IpatG~ 26 (29)
T PF10632_consen 4 NSPRVFGARP--GSPFLFTIPATGE 26 (29)
T ss_pred ccCcEEcccC--CCcEEEEeeccCc
Confidence 3455677764 7899999988875
No 69
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=30.00 E-value=3.4e+02 Score=22.93 Aligned_cols=174 Identities=18% Similarity=0.244 Sum_probs=93.2
Q ss_pred cccCCCCcc------hhhhhHHHH--HhcCCcEE-EEE--------------eCCEEEEEEeccCcccccccccccceEE
Q 029111 9 TVFSPDGHL------FQVEYALEA--VRKGNAAV-GVR--------------GTDIVVLGVEKKSAVKLQDSRMVRKIVS 65 (199)
Q Consensus 9 ~~f~peG~i------~q~eya~~a--v~~g~t~v-gi~--------------~~dgVvla~d~~~~~~l~~~~~~~ki~~ 65 (199)
..|+|-|.+ +=+++|.+. ++.|+|+| +=. +-..++++-++.... ..+-|..
T Consensus 33 E~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~e------r~~~l~a 106 (300)
T COG0031 33 ESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQE------RRKLLRA 106 (300)
T ss_pred hhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH------HHHHHHH
Confidence 457888843 445666654 45677766 222 333444443332211 1112333
Q ss_pred ecCCEEEEEeecHhhHHHHHHHHHHHHHHh-----hh-hcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeC
Q 029111 66 LDNHIALACAGLKADARVLVNRARIECQSH-----RL-TVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDP 139 (199)
Q Consensus 66 i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~-----~~-~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~ 139 (199)
++-++.+.- +..+..+..++++++.+..+ .. ++..+-.++.=-+-.+..+++-+. + + +..+|+|+-.
T Consensus 107 ~GAevi~t~-~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~--g--~--~d~fVagvGT 179 (300)
T COG0031 107 LGAEVILTP-GAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTD--G--K--VDAFVAGVGT 179 (300)
T ss_pred cCCEEEEcC-CCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhC--C--C--CCEEEEeCCc
Confidence 344443332 22333455666666665544 11 455555555433445555543332 1 1 7889999863
Q ss_pred C-------------CCCceEEEECCCCCeeee----eEEEEcCCcHhHHHHHHhhccC---CCc-HHHHHHHHHHHh
Q 029111 140 Y-------------TGVPSLYQTDPSGTFSAW----KANATGRNSNSIREFLEKNYKE---TSG-QETVKLAIRALL 195 (199)
Q Consensus 140 ~-------------~~~p~Ly~vd~~G~~~~~----~~~a~G~g~~~~~~~Le~~~~~---~~s-~ea~~l~~~~l~ 195 (199)
- ...-+++-+||.|+..-. +...-|.|..++-..++...-+ ..+ +||+..+++-.+
T Consensus 180 GGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~ 256 (300)
T COG0031 180 GGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAR 256 (300)
T ss_pred chhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHH
Confidence 0 113699999999988654 5556677766665333332222 357 899988887664
No 70
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=29.40 E-value=45 Score=25.66 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=51.9
Q ss_pred EEEeCCEEEEEEeccCcccccccccccce--------EEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcC------
Q 029111 35 GVRGTDIVVLGVEKKSAVKLQDSRMVRKI--------VSLDNHIALACAGLKADARVLVNRARIECQSHRLTVE------ 100 (199)
Q Consensus 35 gi~~~dgVvla~d~~~~~~l~~~~~~~ki--------~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~------ 100 (199)
=-++.||++|.-|..-. ++.+|+ .-+++.|.+.+.|+.-|...-....+.+++.|....|
T Consensus 82 YYRgSnGalLVyDITDr------dSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eT 155 (218)
T KOG0088|consen 82 YYRGSNGALLVYDITDR------DSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMET 155 (218)
T ss_pred EEeCCCceEEEEeccch------HHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheec
Confidence 35788999998775321 122222 1258889999999999999888777888887754433
Q ss_pred ---CCCCHHHHHHHHHHHHHHh
Q 029111 101 ---DPVTVEYITRYIAGLQQKY 119 (199)
Q Consensus 101 ---~~~~~~~la~~ls~~~~~~ 119 (199)
....++.+-..|...+-+.
T Consensus 156 SAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 156 SAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred ccccccCHHHHHHHHHHHHHHH
Confidence 2244566666666655433
No 71
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=28.63 E-value=3.2e+02 Score=22.11 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=51.3
Q ss_pred hhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHHHHHH---------HHHH
Q 029111 21 EYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNR---------ARIE 91 (199)
Q Consensus 21 eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~---------~~~~ 91 (199)
|-+..-...-...+.|..-+..+||--....+. -.+|.|..-|+|+|.+.|.....-.|.+. +...
T Consensus 33 ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~-----l~pR~F~~~DdIfCiF~G~L~Nl~~L~qqYGLsK~~nEa~~v 107 (228)
T PF12481_consen 33 ELLKDFVSANPNAFSMNFGDSAALAYSHSNQSS-----LHPRLFAGVDDIFCIFLGSLENLCSLRQQYGLSKGANEAMFV 107 (228)
T ss_pred HHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCc-----cccccccccCCEEEEEecchhhHHHHHHHhCcCcCcchhhhH
Confidence 344444444457788888887777654332222 25789999999999999987776665442 2223
Q ss_pred HHHhhhhcCCCC-CHHHHH
Q 029111 92 CQSHRLTVEDPV-TVEYIT 109 (199)
Q Consensus 92 ~~~~~~~~~~~~-~~~~la 109 (199)
++.|+...++-+ |.+++.
T Consensus 108 IEAYrtLRDRgPyPadqvv 126 (228)
T PF12481_consen 108 IEAYRTLRDRGPYPADQVV 126 (228)
T ss_pred HHHHHHhhccCCCChHHHH
Confidence 445665445544 444443
No 72
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase. This model describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and for other carboxysome shell proteins.
Probab=28.50 E-value=42 Score=29.54 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=37.9
Q ss_pred cccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccC--CCc-HHHHHHHHHHHhh
Q 029111 128 FGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE--TSG-QETVKLAIRALLE 196 (199)
Q Consensus 128 ~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s-~ea~~l~~~~l~~ 196 (199)
=.+.+++.|+|.+.+.-.+..-|..|......+..+. +.|++ .|+ ++|...+..++++
T Consensus 236 ASvd~LLIGvDTDtDAirvH~Pda~g~~~l~r~v~~~-----------~lY~~T~~l~~~~Ar~~i~~ai~~ 296 (450)
T TIGR02701 236 ASVDILLIGVDTDTDAIRVHIPDADGFVNLYRYVDNT-----------VLYAETLGLTADEARQHIAEAIDA 296 (450)
T ss_pred cccceeEEeeccCccceEEecCCCCCcccHHHHhhHH-----------HHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4577899999975556677777888887655544432 34543 566 7776666666643
No 73
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=26.34 E-value=57 Score=23.47 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=22.2
Q ss_pred ECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHh
Q 029111 149 TDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALL 195 (199)
Q Consensus 149 vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~ 195 (199)
.|++|+....+..-.|...-.+--.|...+ -+.+ .|.+++|.+.++
T Consensus 11 ~~~dGsv~~T~ViL~~~dGa~ip~~L~~D~-~~ks~~ELi~~ale~iy 57 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDGAYIPVFLPGDK-IDKSNTELIELALEMIY 57 (116)
T ss_pred cCCCCCeeeeEEEEEcCCCcEEEeeCChhh-hcCCHHHHHHHHHHHHH
Confidence 356666666666555554222222222211 3455 566666655554
No 74
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.49 E-value=1.2e+02 Score=18.84 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=22.5
Q ss_pred HhHHHHHHhhccCCCc-HHHHHHHHHHHhh
Q 029111 168 NSIREFLEKNYKETSG-QETVKLAIRALLE 196 (199)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~ 196 (199)
+.|-.-+.+..-+.|| -|||.++...|++
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe 43 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRE 43 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 4455556667778999 9999999988875
No 75
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=25.21 E-value=1.3e+02 Score=21.36 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=27.9
Q ss_pred eecHhhHHHHHHHHHHHHHHh--hhhc----C---C-CCCHHHHHHHHHHHHHHhc
Q 029111 75 AGLKADARVLVNRARIECQSH--RLTV----E---D-PVTVEYITRYIAGLQQKYT 120 (199)
Q Consensus 75 sG~~~D~~~l~~~~~~~~~~~--~~~~----~---~-~~~~~~la~~ls~~~~~~~ 120 (199)
.|..-|+..+.+.++.....+ ++.+ . . .+|++.+|.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 366668888777777644432 2222 1 1 1789999999999887655
No 76
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=24.95 E-value=93 Score=22.28 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=15.3
Q ss_pred CCCc-HHHHHHHHHHHhhccC
Q 029111 180 ETSG-QETVKLAIRALLEVSC 199 (199)
Q Consensus 180 ~~~s-~ea~~l~~~~l~~~~~ 199 (199)
++++ ++....++.+|++|||
T Consensus 55 ~~~~e~~~~~~yr~aL~~AY~ 75 (113)
T PRK00810 55 AGLPEAEARARCRAVLERAYA 75 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 5667 7777888888888876
No 77
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=24.83 E-value=31 Score=23.94 Aligned_cols=9 Identities=67% Similarity=1.143 Sum_probs=6.0
Q ss_pred ccCCCCcch
Q 029111 10 VFSPDGHLF 18 (199)
Q Consensus 10 ~f~peG~i~ 18 (199)
.||||||+.
T Consensus 19 efs~DGkLv 27 (109)
T COG4831 19 EFSPDGKLV 27 (109)
T ss_pred eeCCCCceE
Confidence 477777764
No 78
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=24.80 E-value=1.3e+02 Score=24.82 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=34.5
Q ss_pred eeeeeCCCCCceEEEECCCCCeeee---eEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHH
Q 029111 134 IVGFDPYTGVPSLYQTDPSGTFSAW---KANATGRNSNSIREFLEKNYKETSG-QETVKLAIRA 193 (199)
Q Consensus 134 v~G~d~~~~~p~Ly~vd~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~ 193 (199)
|+|+|- .+..+|..|..... +-||.|.|+. ....-. +-+++ +|.-+++.++
T Consensus 104 IGGQD~-----K~I~~~~~G~v~~f~MNdkCAAGTG~F-Le~~A~---~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALHG-----RAIRMDERGKVEAYKMTSQCASGSGQF-LENIAR---YLGIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCce-----EEEEEcCCCcEeeEEecCcccccccHH-HHHHHH---HhCCCHHHHHHHHhcC
Confidence 899983 58889999998655 7889999943 222222 23566 7776666554
No 79
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=24.68 E-value=68 Score=22.53 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.0
Q ss_pred CCceEEEECCCCCeeee
Q 029111 142 GVPSLYQTDPSGTFSAW 158 (199)
Q Consensus 142 ~~p~Ly~vd~~G~~~~~ 158 (199)
++|+|+++||.+.....
T Consensus 36 d~PrL~Yvdp~~~~~KG 52 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLKG 52 (104)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred cCCEEEEEECCCCeECc
Confidence 57999999999987543
No 80
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=24.58 E-value=4.3e+02 Score=22.33 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=43.1
Q ss_pred cCCCcccccceeeeeeeCCCCCce---EEEEC--CCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHh
Q 029111 122 SGGVRPFGLSTLIVGFDPYTGVPS---LYQTD--PSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALL 195 (199)
Q Consensus 122 ~~~~rp~~~~~iv~G~d~~~~~p~---Ly~vd--~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~ 195 (199)
...+||=.|.. +-..+.-++.|. +..+| +.|...+.....-|.|++....+ +...|.-. +..++.+++.+.
T Consensus 103 ~~~LR~s~V~~-l~r~NtgdNt~~~~pvi~~~iv~~gd~l~I~~~~KGgGsEn~s~~--~mL~P~~g~egi~~fVle~V~ 179 (299)
T PRK08230 103 KAPLRHNAVET-FDEYNTGKNTGSGVPWVFWEIVPDSDDAEIEVYMAGGGCTLPGRA--KVLMPGEGYEGVVKFVFDVIT 179 (299)
T ss_pred cCCCCcccCCC-ccCcCCCCCCCCCCCEEEEEEecCCCEEEEEEEecCCCcccHhhh--eeeCCccchhHHHHHHHHHHH
Confidence 44566655554 233332122333 55555 55788888999999998876444 44455555 666666666665
Q ss_pred hc
Q 029111 196 EV 197 (199)
Q Consensus 196 ~~ 197 (199)
++
T Consensus 180 ~a 181 (299)
T PRK08230 180 SY 181 (299)
T ss_pred hh
Confidence 43
No 81
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.48 E-value=91 Score=21.97 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=27.1
Q ss_pred ceEEecCCEEEEEeecHhhHHHHHHHHHHHH
Q 029111 62 KIVSLDNHIALACAGLKADARVLVNRARIEC 92 (199)
Q Consensus 62 ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 92 (199)
-++.|-+..++.+.|..+|+..+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4789999999999999999999999887654
No 82
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=23.20 E-value=1.3e+02 Score=17.40 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=19.3
Q ss_pred ccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEE
Q 029111 10 VFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLG 45 (199)
Q Consensus 10 ~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla 45 (199)
+-.|+|+..|+.- +-.-|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~~-------~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFPH-------GVANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECCc-------ccceEEEECCceEEee
Confidence 4578999998832 2225667777777764
No 83
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=22.89 E-value=2.5e+02 Score=18.96 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=35.0
Q ss_pred eecHhhHHHHHHHHHHHHHHhhhhcCCCC-CHHHHHHHHHHHHHHhcccCC
Q 029111 75 AGLKADARVLVNRARIECQSHRLTVEDPV-TVEYITRYIAGLQQKYTQSGG 124 (199)
Q Consensus 75 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~-~~~~la~~ls~~~~~~~~~~~ 124 (199)
+--..|++.+.+.++..+.--+- -|..+ +-+-+++-|-+.++.|..+++
T Consensus 39 seq~~e~~eiAsq~r~~i~amRs-iGt~~~~~~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 39 SEQAAEAMEIASQARSMIQAMRS-IGTHPKNSEGLADDLLENLQAYQKRMG 88 (95)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH-hcCCCCCccchHHHHHHHHHHHHHHHh
Confidence 34578999999999888876553 34443 456788888888888876543
No 84
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=22.07 E-value=1.6e+02 Score=17.83 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=22.6
Q ss_pred HhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 168 NSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+.|-.-+.+.-...|| -|||.++.+-+++.
T Consensus 14 Q~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~ 44 (51)
T PF03701_consen 14 QQAVERIQELMAQGMSSGEAIAIVAQEIREE 44 (51)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3445556666778999 99999998888753
No 85
>PF08936 CsoSCA: Carboxysome Shell Carbonic Anhydrase; InterPro: IPR014074 This entry describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and other carboxysome shell proteins.; PDB: 2FGY_B.
Probab=21.42 E-value=1.7e+02 Score=25.97 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=31.0
Q ss_pred cccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhcc--CCCc-HHHHHHHHHHHh
Q 029111 128 FGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK--ETSG-QETVKLAIRALL 195 (199)
Q Consensus 128 ~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s-~ea~~l~~~~l~ 195 (199)
=.+.++|.|+|.+.+.-.+..-|..|......+...+ +.|+ -.|+ ++|..-+.+++.
T Consensus 235 asvd~LLiG~DTDtDAirvH~Pd~~g~~~l~r~vd~~-----------~lY~~T~~l~~~~Ar~~i~~~v~ 294 (459)
T PF08936_consen 235 ASVDLLLIGVDTDTDAIRVHVPDADGEMDLDRWVDAA-----------ELYRETLGLSAEQARARIYEAVA 294 (459)
T ss_dssp --EEEEEEEEETTT--EEEE---TTS---TT-EEEHH-----------HHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CccceEEEeeccCCccEEEeCCCCCCcccHHHHhhHH-----------HHHHHHcCCCHHHHHHHHHHHHH
Confidence 4678899999986666788888999988777777653 3344 2556 666666665553
No 86
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=20.93 E-value=1.1e+02 Score=24.57 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=26.1
Q ss_pred ccccCCCCcchhhhhHHHHHhcCCcEEEEE
Q 029111 8 ITVFSPDGHLFQVEYALEAVRKGNAAVGVR 37 (199)
Q Consensus 8 ~~~f~peG~i~q~eya~~av~~g~t~vgi~ 37 (199)
=|.|| +|...-.|++..|.+.|-..++++
T Consensus 8 HT~~s-dg~~~~~e~~~~A~~~g~~~~~iT 36 (237)
T COG1387 8 HTVFS-DGEATPEEMVEAAIELGLEYIAIT 36 (237)
T ss_pred Ccccc-cCCCCHHHHHHHHHHcCCeEEEEe
Confidence 36788 999999999999999999999986
No 87
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=20.58 E-value=4e+02 Score=21.41 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=28.1
Q ss_pred CceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCcHHH-HHHHH
Q 029111 143 VPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQET-VKLAI 191 (199)
Q Consensus 143 ~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ea-~~l~~ 191 (199)
-|.||.+|+.+.....-+. .|+..+..++.+.-.+.-+++. .+++.
T Consensus 74 ~P~l~~~D~~~~~i~ME~~---~g~~~vk~~i~~~~~~~~~d~~~~~~~~ 120 (229)
T KOG3087|consen 74 APRLIFIDTYGGQIYMEFI---DGASTVKDFILSTMEDESEDEGLAELAR 120 (229)
T ss_pred CceEEEEecCCCeEEEEec---cchhHHHHHHHHHccCcccchhHHHHHH
Confidence 5999999999999766555 4445555555554444333222 44443
No 88
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=20.30 E-value=2.1e+02 Score=20.15 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhcCC-CCCHHHH
Q 029111 82 RVLVNRARIECQSHRLTVED-PVTVEYI 108 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~-~~~~~~l 108 (199)
..++..++..++.|++.+++ +++.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 55777788888999998887 6666554
Done!