Query 029111
Match_columns 199
No_of_seqs 117 out of 1115
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 1.4E-59 4.8E-64 380.8 22.6 195 2-197 1-204 (243)
2 1iru_B 20S proteasome; cell cy 100.0 5.6E-59 1.9E-63 375.1 24.8 196 1-198 2-198 (233)
3 1iru_D 20S proteasome; cell cy 100.0 3.7E-59 1.2E-63 379.4 23.7 196 1-198 1-199 (248)
4 3h4p_A Proteasome subunit alph 100.0 1.5E-59 5.1E-64 384.6 21.2 196 1-198 9-205 (264)
5 1yar_A Proteasome alpha subuni 100.0 1.6E-58 5.6E-63 372.3 24.9 194 3-198 7-201 (233)
6 1ryp_C 20S proteasome; multica 100.0 2.9E-58 1E-62 373.2 25.1 196 2-198 3-200 (244)
7 1iru_G 20S proteasome; cell cy 100.0 2.1E-58 7.3E-63 376.1 23.7 195 2-197 5-200 (254)
8 1ryp_D 20S proteasome; multica 100.0 4.9E-58 1.7E-62 371.3 24.7 194 3-197 1-200 (241)
9 3nzj_F Proteasome component C1 100.0 6.4E-58 2.2E-62 378.4 25.1 195 2-198 6-204 (288)
10 1ryp_B 20S proteasome; multica 100.0 9E-58 3.1E-62 371.6 25.4 196 1-197 2-199 (250)
11 1iru_A 20S proteasome; cell cy 100.0 6.9E-58 2.4E-62 371.4 24.6 196 2-198 7-206 (246)
12 1ryp_G 20S proteasome; multica 100.0 9.9E-58 3.4E-62 370.1 25.3 194 2-197 2-199 (244)
13 1iru_C 20S proteasome; cell cy 100.0 7.2E-58 2.4E-62 374.3 24.6 196 2-198 3-201 (261)
14 1j2p_A Alpha-ring, proteasome 100.0 1.6E-57 5.5E-62 369.3 25.6 192 3-197 7-199 (246)
15 1ryp_F 20S proteasome; multica 100.0 1E-57 3.4E-62 367.8 22.5 193 2-198 3-200 (233)
16 1iru_E 20S proteasome; cell cy 100.0 1.2E-57 4.2E-62 368.9 23.1 194 3-198 7-206 (241)
17 1iru_F 20S proteasome; cell cy 100.0 7.7E-57 2.6E-61 368.5 23.9 193 2-198 4-199 (263)
18 1ryp_E 20S proteasome; multica 100.0 4.8E-57 1.7E-61 365.6 22.2 193 5-198 1-200 (242)
19 1q5q_A Proteasome alpha-type s 100.0 4.2E-47 1.4E-51 310.1 20.7 182 8-198 4-192 (259)
20 3mi0_A Proteasome subunit alph 100.0 3.7E-45 1.3E-49 296.5 23.0 171 19-198 16-192 (248)
21 1yar_H Proteasome beta subunit 100.0 9.1E-43 3.1E-47 277.7 20.9 166 25-197 3-170 (217)
22 2jay_A Proteasome; hydrolase; 100.0 3E-43 1E-47 291.2 18.6 194 2-198 23-232 (291)
23 3h4p_a Proteasome subunit beta 100.0 7.3E-43 2.5E-47 278.6 19.3 164 30-198 1-167 (219)
24 1ryp_H 20S proteasome; multica 100.0 7.2E-43 2.4E-47 276.0 18.9 167 24-197 3-171 (205)
25 1iru_N 20S proteasome; cell cy 100.0 2.4E-43 8.2E-48 281.3 16.1 169 25-197 3-176 (219)
26 1iru_M 20S proteasome; cell cy 100.0 1.9E-42 6.5E-47 275.0 20.8 166 27-197 6-182 (213)
27 3nzj_K Proteasome component PR 100.0 1E-42 3.5E-47 287.4 19.7 181 12-197 51-239 (287)
28 1q5r_H Proteasome beta-type su 100.0 6.1E-43 2.1E-47 289.6 18.2 173 23-197 58-239 (294)
29 1ryp_K 20S proteasome; multica 100.0 2.1E-42 7.3E-47 271.7 20.1 166 30-197 1-168 (198)
30 1ryp_N 20S proteasome; multica 100.0 3.3E-43 1.1E-47 283.0 15.1 170 25-197 3-184 (233)
31 1j2q_H Proteasome beta subunit 100.0 6E-42 2.1E-46 270.0 21.2 161 31-197 1-164 (202)
32 3nzj_H Proteasome component PU 100.0 6.5E-42 2.2E-46 279.4 21.0 168 23-197 22-191 (261)
33 1iru_H 20S proteasome; cell cy 100.0 8.8E-42 3E-46 269.7 20.0 161 31-197 1-163 (205)
34 1ryp_L 20S proteasome; multica 100.0 1.3E-41 4.3E-46 270.1 20.0 162 31-197 1-164 (212)
35 1ryp_M 20S proteasome; multica 100.0 1.4E-41 4.9E-46 271.6 20.3 166 27-197 6-191 (222)
36 1q5q_H Proteasome beta-type su 100.0 9.5E-42 3.3E-46 274.8 19.2 165 31-197 1-174 (235)
37 1iru_J 20S proteasome; cell cy 100.0 1.7E-41 6E-46 267.9 20.1 168 27-198 5-175 (205)
38 1g0u_M Proteasome component PR 100.0 1.6E-42 5.6E-47 284.0 13.6 175 20-197 31-217 (266)
39 1iru_K 20S proteasome; cell cy 100.0 2.8E-41 9.7E-46 266.0 19.5 165 30-197 1-167 (201)
40 1ryp_J 20S proteasome; multica 100.0 4.3E-41 1.5E-45 265.5 20.5 166 27-197 5-173 (204)
41 1iru_L 20S proteasome; cell cy 100.0 3.7E-41 1.3E-45 265.9 19.4 161 31-197 1-163 (204)
42 3unf_H Proteasome subunit beta 100.0 9E-41 3.1E-45 268.9 20.4 160 31-197 1-162 (234)
43 1ryp_I 20S proteasome; multica 100.0 1.9E-40 6.7E-45 265.1 20.7 160 31-197 1-162 (222)
44 1iru_I 20S proteasome; cell cy 100.0 1.7E-39 5.8E-44 261.5 20.2 160 31-197 1-162 (234)
45 3unf_N Proteasome subunit beta 100.0 4.6E-39 1.6E-43 252.9 17.3 159 31-197 1-162 (199)
46 2z3b_A ATP-dependent protease 100.0 1.3E-34 4.4E-39 224.4 16.4 152 28-197 3-163 (180)
47 1m4y_A ATP-dependent protease 100.0 8.7E-34 3E-38 218.0 17.6 150 31-197 1-155 (171)
48 1g3k_A ATP-dependent protease 100.0 2.9E-33 9.9E-38 215.6 16.8 149 31-197 1-156 (174)
49 3jx9_A Putative phosphoheptose 40.6 19 0.00064 26.6 2.8 31 8-38 81-112 (170)
50 2fgy_A Carboxysome shell polyp 34.8 29 0.001 30.0 3.4 59 128-197 314-375 (542)
51 2yxo_A Histidinol phosphatase; 34.0 35 0.0012 26.1 3.6 32 9-40 8-39 (267)
52 2kxe_A DNA polymerase II small 24.4 75 0.0025 19.6 3.0 25 168-192 20-46 (75)
53 4gof_A Small glutamine-rich te 23.8 88 0.003 18.2 3.2 29 170-198 9-41 (52)
54 2yb1_A Amidohydrolase; HET: AM 21.5 71 0.0024 25.2 3.3 39 1-40 1-40 (292)
55 1u84_A Hypothetical protein; s 20.6 1.2E+02 0.0042 19.7 3.8 28 168-195 52-80 (90)
56 3hvz_A Uncharacterized protein 20.3 18 0.00062 23.0 -0.3 45 4-49 4-56 (78)
57 3rj2_X ORF158L protein, putati 20.3 21 0.00073 24.8 -0.0 16 3-18 54-69 (138)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.4e-59 Score=380.77 Aligned_cols=195 Identities=35% Similarity=0.550 Sum_probs=189.7
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~-g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
++||+.+|+|||||||+|+|||.||+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 5899999999999999999999999999 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.+++.++.+++.|++.++++++++.+++++++++|.|++++++|||++++||+|||+ ++||+||++||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999996 58999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccC-------CCc-HHHHHHHHHHHhhc
Q 029111 161 NATGRNSNSIREFLEKNYKE-------TSG-QETVKLAIRALLEV 197 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~-------~~s-~ea~~l~~~~l~~~ 197 (199)
+++|+|++.++++||+.|++ +|| +||++++++||.++
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~ 204 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDA 204 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999 99999999999876
No 2
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=5.6e-59 Score=375.07 Aligned_cols=196 Identities=43% Similarity=0.695 Sum_probs=190.1
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
+++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 47899999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+||| ++||+||.+||+|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe--CCCCeEEEECCCCCEEEeeE
Confidence 9999999999999999999999999999999999999999998899999999999999 57899999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+++|+|+++++++||+.|+++|| +||++++++||+++.
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 198 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESF 198 (233)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTC
T ss_pred EEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999998763
No 3
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.7e-59 Score=379.39 Aligned_cols=196 Identities=73% Similarity=1.142 Sum_probs=189.4
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
|+ ||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|+.+|
T Consensus 1 ~~-yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD 79 (248)
T 1iru_D 1 MS-YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTAD 79 (248)
T ss_dssp -C-CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHH
T ss_pred CC-ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHH
Confidence 55 99999999999999999999999999999999999999999999999988888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.++++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+|||+ +++|+||.+||+|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 158 (248)
T 1iru_D 80 ARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKA 158 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEEEeeE
Confidence 99999999999999999999999999999999999999999988999999999999996 67999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCCC--c-HHHHHHHHHHHhhcc
Q 029111 161 NATGRNSNSIREFLEKNYKETS--G-QETVKLAIRALLEVS 198 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~~--s-~ea~~l~~~~l~~~~ 198 (199)
+++|+|++.++++||+.|+++| | +||++++++||+.+.
T Consensus 159 ~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~ 199 (248)
T 1iru_D 159 NAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVV 199 (248)
T ss_dssp EEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTS
T ss_pred EEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9 999999999998763
No 4
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-59 Score=384.57 Aligned_cols=196 Identities=47% Similarity=0.772 Sum_probs=184.2
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
+++||+.+|+|||||||||+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++||+|+++|+.+|
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHH
Confidence 36799999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.|+++++.+++.|++.++++++++.++++|++++|.|++++++|||++++|||||| ++||+||++||+|++.++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D--~~gp~Ly~iDp~G~~~~~~~ 166 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKA 166 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE--TTEEEEEEECTTCCCEEESE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe--CCcCEEEEECCCceEEecCe
Confidence 9999999999999999999999999999999999999999998999999999999999 47899999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+++|+|+.+++++||+.|+++|| +||++++++||..+.
T Consensus 167 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~ 205 (264)
T 3h4p_A 167 TAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKAN 205 (264)
T ss_dssp EEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHS
T ss_pred EEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999998763
No 5
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.6e-58 Score=372.32 Aligned_cols=194 Identities=44% Similarity=0.688 Sum_probs=183.0
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 82 (199)
+||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86 (233)
T ss_dssp ------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHH
T ss_pred cCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHH
Confidence 79999999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEE
Q 029111 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a 162 (199)
.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||+|||+ ++|+||.+||+|++.++++++
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~a 164 (233)
T 1yar_A 87 VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTINEYKATA 164 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEEeeeEEE
Confidence 999999999999999999999999999999999999999989999999999999994 789999999999999999999
Q ss_pred EcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+|+|+++++++||+.|+++|| +||++++++||+++.
T Consensus 165 iG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~ 201 (233)
T 1yar_A 165 IGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSL 201 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTS
T ss_pred EcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 999999999998763
No 6
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.9e-58 Score=373.20 Aligned_cols=196 Identities=38% Similarity=0.696 Sum_probs=189.1
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++++++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 3799999999999999999999999999999999999999999999999987766 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.++++++.+++.|++.++++++++.+++++++++|.|+++.++|||++++||+|||+ +++|+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKA 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEEeeeE
Confidence 99999999999999999999999999999999999999999889999999999999996 58999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+++|+|+++++++||+.|+++|+ +||++++++||+.+.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 200 (244)
T 1ryp_C 162 ISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTT 200 (244)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 999999999998753
No 7
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.1e-58 Score=376.08 Aligned_cols=195 Identities=33% Similarity=0.494 Sum_probs=188.6
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++||+|+++|..+|+
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 84 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADA 84 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHH
Confidence 57999999999999999999999999999999999999999999999999876666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.|+++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+|||+ +++|+||++||+|++.+++++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~ 163 (254)
T 1iru_G 85 RSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGC 163 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEEeeeeE
Confidence 9999999999999999999999999999999999999999988999999999999996 688999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
++|+|+++++++||+.|+++|+ +||++++++||+.+
T Consensus 164 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~ 200 (254)
T 1iru_G 164 AIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIV 200 (254)
T ss_dssp EESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999865
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4.9e-58 Score=371.31 Aligned_cols=194 Identities=63% Similarity=1.097 Sum_probs=186.8
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccc-cccceEEecCCEEEEEeecHhhH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSR-MVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~-~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
+||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++..+ +.+||++|++|++++++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 69999999999999999999999999999999999999999999999998666554 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCC-CCceEEEECCCCCeeeeeE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT-GVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~-~~p~Ly~vd~~G~~~~~~~ 160 (199)
+.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+|||+ + ++|+||.+||+|++.++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP-RDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCT-TCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcC-CCCCeeEEEECCCCCEEEeee
Confidence 9999999999999999999999999999999999999999888999999999999995 4 8999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhc---cCCCc-HHHHHHHHHHHhhc
Q 029111 161 NATGRNSNSIREFLEKNY---KETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~---~~~~s-~ea~~l~~~~l~~~ 197 (199)
+++|+|+++++++||+.| +++|| +||++++++||+.+
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~ 200 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEV 200 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999 99999999999875
No 9
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=6.4e-58 Score=378.44 Aligned_cols=195 Identities=37% Similarity=0.523 Sum_probs=188.0
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
++||+.+|+|||||||||+|||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++||+|+++|+.+|+
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~ 85 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 85 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHH
Confidence 57999999999999999999999999999999999999999999999999877666678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.|+++++.+++.|++.++++++++.+++++++++|.|++++++|||++++||+|||+ +||+||++||+|++.+++++
T Consensus 86 ~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~ 163 (288)
T 3nzj_F 86 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYWGYKGA 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEEEcCEE
Confidence 9999999999999999999999999999999999999999989999999999999994 78999999999999999999
Q ss_pred EEcCCcHhHHHHHHhh---ccCCCc-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKN---YKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~---~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
++|+|++.++++||+. |+++|| +||++++++||..+.
T Consensus 164 aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~ 204 (288)
T 3nzj_F 164 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAH 204 (288)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHG
T ss_pred EEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999 999999999998753
No 10
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9e-58 Score=371.59 Aligned_cols=196 Identities=37% Similarity=0.595 Sum_probs=189.4
Q ss_pred CCCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 1 ~~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
|++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++++++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 34799999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee
Q 029111 81 ARVLVNRARIECQS-HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (199)
Q Consensus 81 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~ 159 (199)
++.++++++.+++. |+..++.+++++.+++.+++++|.++++.++|||++++||+|||+ +++|+||.+||+|++.+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~ 160 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWK 160 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcC-CCCcEEEEECCCCCEEeec
Confidence 99999999999999 999999999999999999999999999888999999999999996 5799999999999999999
Q ss_pred EEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 160 ANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 160 ~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
++++|+|+++++++||+.|+++|| +||++++++||+.+
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~ 199 (250)
T 1ryp_B 161 ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKES 199 (250)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred eeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999876
No 11
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=6.9e-58 Score=371.45 Aligned_cols=196 Identities=37% Similarity=0.609 Sum_probs=189.6
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~-g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
++||+.+|+|||||||+|+|||.+|+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++++++|..+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 4799999999999999999999999999 999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.|.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++||+|||+ ++||+||.+||+|++.++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 165 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKA 165 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEEEeeE
Confidence 99999999999999999999999999999999999999999888999999999999996 58999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccC--CCc-HHHHHHHHHHHhhcc
Q 029111 161 NATGRNSNSIREFLEKNYKE--TSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~--~~s-~ea~~l~~~~l~~~~ 198 (199)
+++|+|+++++++||+.|++ +|+ +||++++++||+++.
T Consensus 166 ~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~ 206 (246)
T 1iru_A 166 TAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVL 206 (246)
T ss_dssp EEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 999 999999999998763
No 12
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=9.9e-58 Score=370.12 Aligned_cols=194 Identities=37% Similarity=0.527 Sum_probs=186.9
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++++++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 68999999999999999999999999999999999999999999999999876666667999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.++++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe--CCcCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999988899999999999999 478999999999999999999
Q ss_pred EEcCCcHhHHHHHHhh---ccCCCc-HHHHHHHHHHHhhc
Q 029111 162 ATGRNSNSIREFLEKN---YKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~---~~~~~s-~ea~~l~~~~l~~~ 197 (199)
++|+|+++++++||+. |+++|| +||++++++||+++
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~ 199 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 199 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999997 999999 99999999999875
No 13
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=7.2e-58 Score=374.31 Aligned_cols=196 Identities=38% Similarity=0.652 Sum_probs=187.6
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCccccccc-ccccceEEecCCEEEEEeecHhh
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDS-RMVRKIVSLDNHIALACAGLKAD 80 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~-~~~~ki~~i~~~i~~~~sG~~~D 80 (199)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++++... ++.+||++|++|++++++|+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 47999999999999999999999999999999999999999999999999865544 45899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeE
Q 029111 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~ 160 (199)
++.|+++++.+++.|+++++++++++.+++++++++|.|+++.++|||++++||+|||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWKA 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEEeeee
Confidence 99999999999999999999999999999999999999999888999999999999996 68999999999999999999
Q ss_pred EEEcCCcHhHHHHHHhhccC-CCc-HHHHHHHHHHHhhcc
Q 029111 161 NATGRNSNSIREFLEKNYKE-TSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 161 ~a~G~g~~~~~~~Le~~~~~-~~s-~ea~~l~~~~l~~~~ 198 (199)
+++|+|+.+++++||+.|++ +|| +||++++++||..+.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~ 201 (261)
T 1iru_C 162 TCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201 (261)
T ss_dssp EEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSS
T ss_pred EEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999 999999999998763
No 14
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.6e-57 Score=369.32 Aligned_cols=192 Identities=48% Similarity=0.780 Sum_probs=187.2
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 82 (199)
+||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 86 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADAR 86 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHH
Confidence 69999999999999999999999999999999999999999999999998887788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEE
Q 029111 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (199)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a 162 (199)
.++++++.+++.|++.++++++++.+++++++++|.|+++.+.|||++++||+||| ++|+||.+||+|++.++++++
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 87 VLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEEeeeEEE
Confidence 99999999999999999999999999999999999999998899999999999998 689999999999999999999
Q ss_pred EcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 163 ~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+|+|+++++++||+.|+++|| +||++++++||..+
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~ 199 (246)
T 1j2p_A 164 IGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLS 199 (246)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999875
No 15
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1e-57 Score=367.78 Aligned_cols=193 Identities=36% Similarity=0.569 Sum_probs=185.8
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++.+. ++.+||++|++|++++++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 369999999999999999999999999999999999999999999999988765 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|||||| ++||+||++||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYD--KSGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEe--CCcCEEEEECCCCCeeeeeEE
Confidence 999999999999999999999999999999999999999998999999999999999 478999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccC--CC--c-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKNYKE--TS--G-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~--~~--s-~ea~~l~~~~l~~~~ 198 (199)
++|+|++.++++||+.|++ +| | +||++++++||.++.
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~ 200 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL 200 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99 9 999999999998764
No 16
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.2e-57 Score=368.93 Aligned_cols=194 Identities=38% Similarity=0.654 Sum_probs=186.8
Q ss_pred CCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHH
Q 029111 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~ 82 (199)
+||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAK 86 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHH
T ss_pred CCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHH
Confidence 79999999999999999999999999999999999999999999999998776688899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCC-----CcccccceeeeeeeCCCCCceEEEECCCCCeee
Q 029111 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA 157 (199)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~-----~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~ 157 (199)
.++++++.+++.|+.+++++++++.+++++++++|.|+++.+ .|||++++||+||| +++|+||.+||+|++.+
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~ 164 (241)
T 1iru_E 87 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQ 164 (241)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe--CCCCEEEEECCCCcEEe
Confidence 999999999999999999999999999999999999998877 89999999999999 58999999999999999
Q ss_pred eeEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 158 WKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 158 ~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
++++++|+|+++++++||+.|+++|| +||++++++||.++.
T Consensus 165 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 206 (241)
T 1iru_E 165 CDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVM 206 (241)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHC
T ss_pred cceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 999999999998753
No 17
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=7.7e-57 Score=368.49 Aligned_cols=193 Identities=39% Similarity=0.624 Sum_probs=185.9
Q ss_pred CCCCCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhH
Q 029111 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~ 81 (199)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++||+|+++|+.+|+
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~ 81 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADA 81 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHH
Confidence 479999999999999999999999999999999999999999999999988764 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEE
Q 029111 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (199)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~ 161 (199)
+.|+++++.+++.|++.++++++++.+++++++++|.|+++.+.|||++++||+||| ++||+||++||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 82 RLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD--DMGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEc--CCCCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999988899999999999999 478999999999999999999
Q ss_pred EEcCCcHhHHHHHHhhccC--CCc-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKNYKE--TSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~--~~s-~ea~~l~~~~l~~~~ 198 (199)
++|+|+++++++||+.|++ +|| +||++++++||+++.
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~ 199 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 999 999999999998763
No 18
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=4.8e-57 Score=365.64 Aligned_cols=193 Identities=37% Similarity=0.639 Sum_probs=186.1
Q ss_pred CCCccccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHHH
Q 029111 5 DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVL 84 (199)
Q Consensus 5 d~~~~~f~peG~i~q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l 84 (199)
|+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|+|.+++++.+++.+||++|++|++++++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78899999999999999999999999999999999999999999999877668889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCC------CcccccceeeeeeeCCCCCceEEEECCCCCeeee
Q 029111 85 VNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~------~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~ 158 (199)
+++++.+++.|+++++++++++.+++++++++|.|+++++ .|||++++||+|||+ +++|+||.+||+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEecc
Confidence 9999999999999999999999999999999999999887 899999999999996 688999999999999999
Q ss_pred eEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 159 KANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 159 ~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+++++|+|+++++++||+.|+++|| +||++++++||..+.
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 200 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVM 200 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 999999999998763
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=4.2e-47 Score=310.13 Aligned_cols=182 Identities=17% Similarity=0.234 Sum_probs=165.4
Q ss_pred ccccCCCCcch-hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHHHHH
Q 029111 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVN 86 (199)
Q Consensus 8 ~~~f~peG~i~-q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~ 86 (199)
|.-|||||++. |+|||.+++++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..+|++.|++
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 45689999995 9999999999999999999999999999998 257899999999999999999999999999
Q ss_pred HHHHHHHHhhhhcC-CCCCHHHHHHHHHH-HHHHhcccCCCcccccceeeeeee--CCCCCceEEEECCCCCee-eeeEE
Q 029111 87 RARIECQSHRLTVE-DPVTVEYITRYIAG-LQQKYTQSGGVRPFGLSTLIVGFD--PYTGVPSLYQTDPSGTFS-AWKAN 161 (199)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~~~~la~~ls~-~~~~~~~~~~~rp~~~~~iv~G~d--~~~~~p~Ly~vd~~G~~~-~~~~~ 161 (199)
+++.+++.|++.++ ++++++.+++++++ +.|.|+. +.|||++++||+||| +.++||+||++||+|++. +++++
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ 154 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFV 154 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEE
Confidence 99999999998888 59999999999999 6677773 689999999999999 224789999999999999 88999
Q ss_pred EEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 162 a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
++|+|++.++++||+.|+++|+ +||++++++||..+.
T Consensus 155 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~ 192 (259)
T 1q5q_A 155 VMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGG 192 (259)
T ss_dssp EESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC
T ss_pred EECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999998763
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.7e-45 Score=296.49 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=160.6
Q ss_pred hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhh
Q 029111 19 QVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLT 98 (199)
Q Consensus 19 q~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 98 (199)
+.|||.||+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|..+|++.|.+.++.+++.|++.
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~ 88 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYA 88 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999 347899999999999999999999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHH-HHHHHhcccCCCcccccceeeeeeeC--CCCCceEEEECCCCCeee-eeEEEEcCCcHhHHHH
Q 029111 99 VE-DPVTVEYITRYIA-GLQQKYTQSGGVRPFGLSTLIVGFDP--YTGVPSLYQTDPSGTFSA-WKANATGRNSNSIREF 173 (199)
Q Consensus 99 ~~-~~~~~~~la~~ls-~~~~~~~~~~~~rp~~~~~iv~G~d~--~~~~p~Ly~vd~~G~~~~-~~~~a~G~g~~~~~~~ 173 (199)
++ ++++++.|+++++ .+.|.|++ ++|||+|++||+|||+ +.+||+||++||+|++.+ ++++|+|+|++.++++
T Consensus 89 ~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~ 166 (248)
T 3mi0_A 89 YDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANA 166 (248)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHH
Confidence 99 8999999999999 77888887 6899999999999994 138999999999999995 9999999999999999
Q ss_pred HHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 174 LEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 174 Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
||+.|+++|+ +||++++++||+++.
T Consensus 167 Le~~y~~~mt~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 167 LKESYAENASLTDALRIAVAALRAGS 192 (248)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999998763
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=9.1e-43 Score=277.71 Aligned_cols=166 Identities=24% Similarity=0.384 Sum_probs=153.7
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCC
Q 029111 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPV 103 (199)
Q Consensus 25 ~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 103 (199)
+++++|+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++++++|..+|++.++++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999987 688888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc
Q 029111 104 TVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG 183 (199)
Q Consensus 104 ~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 183 (199)
+++.+++++++.+|.+ +.|||++++||+||| +||+||.+||+|++.+++++++|+|+++++++||+.|+++||
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID---TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES---SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC---CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCC
Confidence 9999999999999764 378999999999998 579999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHhhc
Q 029111 184 -QETVKLAIRALLEV 197 (199)
Q Consensus 184 -~ea~~l~~~~l~~~ 197 (199)
+||++++++||+.+
T Consensus 156 ~eea~~la~~al~~~ 170 (217)
T 1yar_H 156 VDEGVDLVIRAISAA 170 (217)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 99999999999875
No 22
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3e-43 Score=291.22 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=150.8
Q ss_pred CCCCCCccccCCCCcc-----hh--hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEE
Q 029111 2 ARYDRAITVFSPDGHL-----FQ--VEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALA 73 (199)
Q Consensus 2 ~~yd~~~~~f~peG~i-----~q--~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~ 73 (199)
++|+..+....||.-- ++ .|||.+ +++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 3566667777777432 23 589999 99999999999999999999999987 477788899999999999999
Q ss_pred EeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCC-----ceEEE
Q 029111 74 CAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQ 148 (199)
Q Consensus 74 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~-----p~Ly~ 148 (199)
++|..+|++.++++++.+++.|++.++++++++.+++++++++|.+++ ..+|||++++||||||+ +++ |+||+
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDI-HASDPQSAGRIVS 179 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECT-TCSCSTTCEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeC-CCCcCCCCCEEEE
Confidence 999999999999999999999999999999999999999999998865 35789999999999996 555 99999
Q ss_pred ECCCCCee--eeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhcc
Q 029111 149 TDPSGTFS--AWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVS 198 (199)
Q Consensus 149 vd~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~~ 198 (199)
+||+|++. +++++++|+|+++++++||+.|+++|| +||++++++||+.+.
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~ 232 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAA 232 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC-
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999998 889999999999999999999999999 999999999998753
No 23
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.3e-43 Score=278.63 Aligned_cols=164 Identities=24% Similarity=0.345 Sum_probs=155.4
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
|+|+|||+++||||||+|+|.++ .++.+++.+||++|++||+|+++|..+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999987 56778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee-EEEEcCCcHhHHHHHHhhccCCCc-HHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKNYKETSG-QET 186 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s-~ea 186 (199)
++++++++|.+ +.|||++++||+|||+ ++||+||++||+|++.+++ ++++|+|+++++++||+.|+++|| +||
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea 155 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDL-LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG 155 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEET-TTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeC-CCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999876 3689999999999996 5899999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHhhcc
Q 029111 187 VKLAIRALLEVS 198 (199)
Q Consensus 187 ~~l~~~~l~~~~ 198 (199)
++++++||..+.
T Consensus 156 ~~la~~al~~~~ 167 (219)
T 3h4p_a 156 IKLALNALKSAM 167 (219)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 24
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=7.2e-43 Score=275.95 Aligned_cols=167 Identities=17% Similarity=0.262 Sum_probs=158.8
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeccCccc-ccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCC
Q 029111 24 LEAVRKGNAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDP 102 (199)
Q Consensus 24 ~~av~~g~t~vgi~~~dgVvla~d~~~~~~-l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 102 (199)
.+++++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 478899999999999999999999999885 777888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCC
Q 029111 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETS 182 (199)
Q Consensus 103 ~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 182 (199)
++++.+++++++.+|.|+++ |++++||+|||+ +++|+||.+||+|++.+++++++|+|+++++++||+.|+++|
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEec-CCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 99999999999999988652 999999999996 578999999999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHhhc
Q 029111 183 G-QETVKLAIRALLEV 197 (199)
Q Consensus 183 s-~ea~~l~~~~l~~~ 197 (199)
| +||++++++||+.+
T Consensus 156 s~eea~~l~~~al~~a 171 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQA 171 (205)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9 99999999999875
No 25
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.4e-43 Score=281.32 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=159.9
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhh-hcCCC
Q 029111 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRL-TVEDP 102 (199)
Q Consensus 25 ~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~ 102 (199)
+|+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.|.++++.+++.|++ .++++
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999999999999987 777788999999999999999999999999999999999999998 89999
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccC--
Q 029111 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-- 180 (199)
Q Consensus 103 ~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-- 180 (199)
++++.+++++++.++ +++.++|||++++||+|||+ ++|+||.+||+|++.+++++++|+|+++++++||+.|++
T Consensus 83 ~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 83 YSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCHHHHHHHHHHHHH--HhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999995 45556899999999999994 699999999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHhhc
Q 029111 181 TSG-QETVKLAIRALLEV 197 (199)
Q Consensus 181 ~~s-~ea~~l~~~~l~~~ 197 (199)
+|| +||++++++||+.+
T Consensus 159 ~mt~eea~~l~~~al~~~ 176 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVL 176 (219)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999 99999999999865
No 26
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.9e-42 Score=274.98 Aligned_cols=166 Identities=17% Similarity=0.341 Sum_probs=155.9
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccc-cccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~~l-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (199)
+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|..+|++.|+++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 5789999999999999999999998854 455789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhh--------
Q 029111 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKN-------- 177 (199)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~-------- 177 (199)
+.+++++++.+ |+++ .|||++++||+|||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcC-CCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 99999999999 5554 799999999999996 5679999999999999999999999999999999999
Q ss_pred -ccCCCc-HHHHHHHHHHHhhc
Q 029111 178 -YKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 178 -~~~~~s-~ea~~l~~~~l~~~ 197 (199)
|+++|| +||++++++||..+
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~ 182 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISA 182 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 889999 99999999999875
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1e-42 Score=287.42 Aligned_cols=181 Identities=19% Similarity=0.322 Sum_probs=155.7
Q ss_pred CCCCcchhh------hhHHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHH
Q 029111 12 SPDGHLFQV------EYALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVL 84 (199)
Q Consensus 12 ~peG~i~q~------eya~~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l 84 (199)
+|+..+.+. .++..++++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.+
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 455555443 36788999999999999999999999999987 77788899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEc
Q 029111 85 VNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATG 164 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G 164 (199)
.++++.+++.|+++++++++++.+++++++++|.+++ +||++++||+|||+ ++||+||++||+|++.+++++++|
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~~~~~~AiG 205 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVG 205 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEET-TTEEEEEEEETTCCEEECSEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCCEEEEECCCceEEEcCeEEEe
Confidence 9999999999999999999999999999999988765 49999999999997 689999999999999999999999
Q ss_pred CCcHhHHHHHHhhccCCCc-HHHHHHHHHHHhhc
Q 029111 165 RNSNSIREFLEKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 165 ~g~~~~~~~Le~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
+|+++++++||+.|+++|| +||++++++||..+
T Consensus 206 sgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a 239 (287)
T 3nzj_K 206 SGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 239 (287)
T ss_dssp TTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999875
No 28
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=6.1e-43 Score=289.63 Aligned_cols=173 Identities=20% Similarity=0.203 Sum_probs=163.4
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCC
Q 029111 23 ALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVED 101 (199)
Q Consensus 23 a~~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (199)
|.+|+++|+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.|+++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 889999999999999999999999999987 7888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCC-----ceEEEECCCCCeeee--eEEEEcCCcHhHHHHH
Q 029111 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSIREFL 174 (199)
Q Consensus 102 ~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~-----p~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~L 174 (199)
+++++.++++|++++|.++++. +|||++++||+|||+ +++ |+||++||+|++.++ +++++|+|+++++++|
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 9999999999999999988754 899999999999996 546 999999999999999 9999999999999999
Q ss_pred HhhccCCCc-HHHHHHHHHHHhhc
Q 029111 175 EKNYKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 175 e~~~~~~~s-~ea~~l~~~~l~~~ 197 (199)
|+.|+++|+ +||++++++||+.+
T Consensus 216 e~~y~~~ms~eEAi~la~~aL~~a 239 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIESLYDA 239 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHH
Confidence 999999999 99999999999865
No 29
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.1e-42 Score=271.75 Aligned_cols=166 Identities=21% Similarity=0.256 Sum_probs=154.6
Q ss_pred CCcEEEEEeCCEEEEEEeccCccc-ccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~~-l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
++|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 589999999999999999999874 4446789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
++++++.++.+++. .+||++++||+|||+++++|+||.+||+|++.+++++++|+|+++++++||+.|+++|| +||+
T Consensus 81 a~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 81 SSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999888742 35999999999999423789999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhc
Q 029111 188 KLAIRALLEV 197 (199)
Q Consensus 188 ~l~~~~l~~~ 197 (199)
+++++||+++
T Consensus 159 ~l~~~al~~~ 168 (198)
T 1ryp_K 159 DLLKLCVQEL 168 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 30
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.3e-43 Score=283.01 Aligned_cols=170 Identities=14% Similarity=0.210 Sum_probs=160.5
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhh-----h
Q 029111 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRL-----T 98 (199)
Q Consensus 25 ~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 98 (199)
+|+++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++++++|..+|++.|.++++.+++.|++ +
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 5788999999999999999999999986 677788999999999999999999999999999999999999999 8
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhc
Q 029111 99 VEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY 178 (199)
Q Consensus 99 ~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 178 (199)
++++++++.+++++++.++ +++.++|||++++||+|||+ +++|+||.+||+|++.+++++++|+|+++++++||+.|
T Consensus 83 ~~~~~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 83 AEEALEPSYIFEYLATVMY--QRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTSCCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred cCCCCCHHHHHHHHHHHHH--HhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 9999999999999999994 45566899999999999996 56999999999999999999999999999999999999
Q ss_pred cC-----CCc-HHHHHHHHHHHhhc
Q 029111 179 KE-----TSG-QETVKLAIRALLEV 197 (199)
Q Consensus 179 ~~-----~~s-~ea~~l~~~~l~~~ 197 (199)
++ +|| +||++++++||+.+
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~ 184 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVL 184 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHH
Confidence 99 999 99999999999875
No 31
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=6e-42 Score=270.02 Aligned_cols=161 Identities=30% Similarity=0.410 Sum_probs=153.9
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999987 678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee-EEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
+++++.+|.+ +.|||++++||+|||+ +||+||.+||+|++.+++ ++++|+|+++++++||+.|+++|| +||+
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS--EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET--TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC--CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence 9999999764 3789999999999994 789999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHhhc
Q 029111 188 KLAIRALLEV 197 (199)
Q Consensus 188 ~l~~~~l~~~ 197 (199)
+++++||+.+
T Consensus 155 ~la~~al~~~ 164 (202)
T 1j2q_H 155 ELAVRAIYSA 164 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 32
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.5e-42 Score=279.36 Aligned_cols=168 Identities=21% Similarity=0.247 Sum_probs=152.4
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCC
Q 029111 23 ALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVED 101 (199)
Q Consensus 23 a~~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (199)
..||+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.+.++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 368999999999999999999999999987 6677889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCC
Q 029111 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKET 181 (199)
Q Consensus 102 ~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 181 (199)
+++++.+++++++.++.| .+||++++||+|||+ +||+||++||+|++.+++++++|+|++.++++||+.|+++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 174 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 174 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC--CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccC
Confidence 999999999999988654 369999999999995 6899999999999999999999999999999999999999
Q ss_pred Cc-HHHHHHHHHHHhhc
Q 029111 182 SG-QETVKLAIRALLEV 197 (199)
Q Consensus 182 ~s-~ea~~l~~~~l~~~ 197 (199)
|| |||++++++||..+
T Consensus 175 ms~eEA~~la~~al~~a 191 (261)
T 3nzj_H 175 LTKEEAIKLASDAIQAG 191 (261)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99 99999999999865
No 33
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=8.8e-42 Score=269.65 Aligned_cols=161 Identities=18% Similarity=0.312 Sum_probs=154.4
Q ss_pred CcEEEEEeCCEEEEEEeccCccc-ccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~-l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999885 77888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.+|.|++ ||++++||+|||+ +++|+||.+||+|++.+++++++|+|+++++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~ 154 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQ 154 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeC-CCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999998764 9999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+++
T Consensus 155 l~~~al~~~ 163 (205)
T 1iru_H 155 FTANALALA 163 (205)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 34
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.3e-41 Score=270.09 Aligned_cols=162 Identities=19% Similarity=0.342 Sum_probs=155.3
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999987 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.+|.|+++ ||++++||+|||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 155 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 155 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeC-CCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHH
Confidence 9999999988763 8999999999996 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 156 la~~al~~~ 164 (212)
T 1ryp_L 156 LGKRSILAA 164 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
No 35
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.4e-41 Score=271.62 Aligned_cols=166 Identities=23% Similarity=0.399 Sum_probs=155.7
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccc-cccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcC-CCCC
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVE-DPVT 104 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~~l-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~ 104 (199)
+++|+|+|||+++||||||+|+|.++.+ +.+++.+||++|++|++++++|..+|++.|+++++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5799999999999999999999998854 4677899999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhh-------
Q 029111 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKN------- 177 (199)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~------- 177 (199)
++.+++++++.+ |.+ +.+||++++||+|||+ +++|+||.+||.|++.+++++++|+|+.+++++||+.
T Consensus 86 v~~la~~l~~~l--y~~--r~~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 86 INSAARNIQHLL--YGK--RFFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp HHHHHHHHHHHH--HTT--TTSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred HHHHHHHHHHHH--Hhc--CCCCceEEEEEEEEcC-CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 999999999998 444 3689999999999996 6779999999999999999999999999999999998
Q ss_pred ----------ccCCCc-HHHHHHHHHHHhhc
Q 029111 178 ----------YKETSG-QETVKLAIRALLEV 197 (199)
Q Consensus 178 ----------~~~~~s-~ea~~l~~~~l~~~ 197 (199)
|+++|| +||++++++||..+
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a 191 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSA 191 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 889999 99999999999865
No 36
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=9.5e-42 Score=274.84 Aligned_cols=165 Identities=21% Similarity=0.211 Sum_probs=157.1
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++++++|..+|++.|+++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999987 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCC-----ceEEEECCCCCeeee--eEEEEcCCcHhHHHHHHhhccCCC
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYKETS 182 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~-----p~Ly~vd~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~ 182 (199)
++|++++|.++++. +|||++++||+|||+ +++ |+||++||+|++.++ +++++|+|+++++++||+.|+++|
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 158 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS 158 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence 99999999888764 899999999999996 546 999999999999999 999999999999999999999999
Q ss_pred c-HHHHHHHHHHHhhc
Q 029111 183 G-QETVKLAIRALLEV 197 (199)
Q Consensus 183 s-~ea~~l~~~~l~~~ 197 (199)
| +||++++++||..+
T Consensus 159 s~eeA~~la~~al~~a 174 (235)
T 1q5q_H 159 DEETALRAAIESLYDA 174 (235)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9 99999999999865
No 37
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.7e-41 Score=267.94 Aligned_cols=168 Identities=17% Similarity=0.284 Sum_probs=154.0
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (199)
+.+|+|+|||+++||||||+|+|.++++.. +++.+||++|++|++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 368999999999999999999999885544 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee-eEEEEcCCcHhHHHHHHhhccCCCc-
Q 029111 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG- 183 (199)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s- 183 (199)
+.+++++++.+ |+++ ..||++++||+|||+++++|+||.+||+|++.++ +++++|+|+++++++||+.|+++||
T Consensus 85 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp HHHHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 99999999999 6665 3499999999999942478999999999999555 7799999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 029111 184 QETVKLAIRALLEVS 198 (199)
Q Consensus 184 ~ea~~l~~~~l~~~~ 198 (199)
+||++++++||+++.
T Consensus 161 eea~~l~~~al~~~~ 175 (205)
T 1iru_J 161 DHLFETISQAMLNAV 175 (205)
T ss_dssp HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 38
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.6e-42 Score=283.97 Aligned_cols=175 Identities=14% Similarity=0.217 Sum_probs=162.3
Q ss_pred hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhh-
Q 029111 20 VEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRL- 97 (199)
Q Consensus 20 ~eya~~av~~g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 97 (199)
.+.+.+++++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|+++|..+|++.|+++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 455678889999999999999999999999986 677788999999999999999999999999999999999999998
Q ss_pred ----hcCCCCCHHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHH
Q 029111 98 ----TVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREF 173 (199)
Q Consensus 98 ----~~~~~~~~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~ 173 (199)
.++++++++.+++++++.+ |+++.++|||++++||+|||+ +++|+||.+||+|++.+++++++|+|+++++++
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 187 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPL 187 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHTHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEeCCEEEEccCHHHHHHH
Confidence 8999999999999999998 455556899999999999996 569999999999999999999999999999999
Q ss_pred HHhhccC-----CCc-HHHHHHHHHHHhhc
Q 029111 174 LEKNYKE-----TSG-QETVKLAIRALLEV 197 (199)
Q Consensus 174 Le~~~~~-----~~s-~ea~~l~~~~l~~~ 197 (199)
||+.|++ +|| +||++++++||+.+
T Consensus 188 Le~~~~~~~~~~~ms~eeA~~la~~al~~a 217 (266)
T 1g0u_M 188 LRKVVDRESDIPKTTVQVAEEAIVNAMRVL 217 (266)
T ss_dssp HTTTCSSGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 999 99999999999875
No 39
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.8e-41 Score=265.97 Aligned_cols=165 Identities=18% Similarity=0.273 Sum_probs=153.4
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 30 g~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
++|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 58999999999999999999987 68888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
++++++.+..+.+ ..|||++++||+|||+ +++|+||.+||+|++.+++++++|+|+++++++||+.|+++|| +||+
T Consensus 81 a~~~~~~l~~~~~--~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 157 (201)
T 1iru_K 81 ANFTRRNLADCLR--SRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHHHHT--SSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCccEEEEEEEEeC-CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHH
Confidence 9999887632222 2379999999999996 5799999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhc
Q 029111 188 KLAIRALLEV 197 (199)
Q Consensus 188 ~l~~~~l~~~ 197 (199)
+++++||+.+
T Consensus 158 ~l~~~al~~a 167 (201)
T 1iru_K 158 ELLRKCLEEL 167 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 40
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=4.3e-41 Score=265.49 Aligned_cols=166 Identities=20% Similarity=0.288 Sum_probs=153.0
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccccc-cccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCH
Q 029111 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (199)
Q Consensus 27 v~~g~t~vgi~~~dgVvla~d~~~~~~l~~-~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (199)
+.+|+|+|||+++||||||+|+|.++++.. +++.+||++|+ |++++++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 468999999999999999999999885544 45899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee-eEEEEcCCcHhHHHHHHhhccCCCc-
Q 029111 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG- 183 (199)
Q Consensus 106 ~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s- 183 (199)
+.+++++++.+ |+++. .||++++||+|||+++++|+||.+||+|++.++ +++++|+|+++++++||+.|+++||
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 67653 399999999999942478999999999999555 7799999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029111 184 QETVKLAIRALLEV 197 (199)
Q Consensus 184 ~ea~~l~~~~l~~~ 197 (199)
+||++++++||+.+
T Consensus 160 eea~~l~~~al~~~ 173 (204)
T 1ryp_J 160 EDLFETISQALLNA 173 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 41
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.7e-41 Score=265.91 Aligned_cols=161 Identities=18% Similarity=0.301 Sum_probs=153.7
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999987 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.+|.+++ +||++++||+||| ++||+||.+||+|++.+++++|+|+|+++++++||+.|+++|| +||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWD--KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEEC--SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEe--CCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHH
Confidence 999999987753 4899999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 155 l~~~al~~~ 163 (204)
T 1iru_L 155 LARRAIYQA 163 (204)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
No 42
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=9e-41 Score=268.85 Aligned_cols=160 Identities=22% Similarity=0.313 Sum_probs=151.3
Q ss_pred CcEEEEEeCCEEEEEEeccCcccc-cccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~l-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++|+++|..+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999998854 5567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.++.| .+||++++||||||+ +||+||++||+|++.+++++++|+|++.++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL--NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC--CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHH
Confidence 9999999765 359999999999994 789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 154 la~~al~~~ 162 (234)
T 3unf_H 154 LLVEAITAG 162 (234)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 43
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.9e-40 Score=265.08 Aligned_cols=160 Identities=21% Similarity=0.243 Sum_probs=151.3
Q ss_pred CcEEEEEeCCEEEEEEeccCccc-ccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~-l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++. ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999874 45667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.++.| .|||++++||||+|+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+++|| +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC--CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHH
Confidence 9999998765 369999999999994 789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+++
T Consensus 154 la~~al~~~ 162 (222)
T 1ryp_I 154 LASDAIQAG 162 (222)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.7e-39 Score=261.54 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=150.6
Q ss_pred CcEEEEEeCCEEEEEEeccCcccc-cccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~l-~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
+|+|||+++||||||+|+|.++++ +.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999998854 4557899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccCCCc-HHHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~~ 188 (199)
+++++.++.|. +||++++||||||+ +||+||.+||+|++.+++++++|+|++.++++||+.|+++|| +||++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D~--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVDV--TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEECS--SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHT
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEcC--CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHH
Confidence 99999987653 59999999999994 789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 029111 189 LAIRALLEV 197 (199)
Q Consensus 189 l~~~~l~~~ 197 (199)
++++||+.+
T Consensus 154 la~~al~~a 162 (234)
T 1iru_I 154 LVSEAIAAG 162 (234)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=4.6e-39 Score=252.91 Aligned_cols=159 Identities=20% Similarity=0.277 Sum_probs=148.2
Q ss_pred CcEEEEEeCCEEEEEEeccCccc-ccccccccceEEecCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~~-l~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 109 (199)
||+|||+++||||||+|+|.+++ ++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999874 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeee-eEEEEcCCcHhHHHHHHhhccCCCc-HHHH
Q 029111 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG-QETV 187 (199)
Q Consensus 110 ~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s-~ea~ 187 (199)
++++++++.+ .|||++++||+|||+ +++|+||+ |+|++.++ +++++|+|+++++++||+.|+++|| +||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~ 152 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence 9999999754 359999999999996 58899999 99997555 5666799999999999999999999 9999
Q ss_pred HHHHHHHhhc
Q 029111 188 KLAIRALLEV 197 (199)
Q Consensus 188 ~l~~~~l~~~ 197 (199)
+++++||+.+
T Consensus 153 ~la~~al~~~ 162 (199)
T 3unf_N 153 RFTTNAITLA 162 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.3e-34 Score=224.39 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=132.5
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCcc-cc-cccccccceEEe-cCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCC
Q 029111 28 RKGNAAVGVRGTDIVVLGVEKKSAV-KL-QDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (199)
Q Consensus 28 ~~g~t~vgi~~~dgVvla~d~~~~~-~l-~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 104 (199)
.+|+|+|||+++||||||+|+|.++ .+ +.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+ |
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 5799999999999999999999987 57 888999999999 999999999999999999999999999998 3
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeee--eeEEEEcCCcHhHHHHHHhhccC--
Q 029111 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA--WKANATGRNSNSIREFLEKNYKE-- 180 (199)
Q Consensus 105 ~~~la~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~-- 180 (199)
.+.+.++++.+.+++...+|||++++||+ | +|+||.+||+|++.+ ++++|+|+|+++++++||+.|++
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ 147 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG 147 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC
Confidence 23344445555566667789999999999 5 599999999999988 49999999999999999999998
Q ss_pred -CCc-HHHHHHHHHHHhhc
Q 029111 181 -TSG-QETVKLAIRALLEV 197 (199)
Q Consensus 181 -~~s-~ea~~l~~~~l~~~ 197 (199)
+|| ||+ +++||+.+
T Consensus 148 ~~mt~eel---~~~al~~a 163 (180)
T 2z3b_A 148 ESMSASEI---ARAALETA 163 (180)
T ss_dssp GGCCHHHH---HHHHHHHH
T ss_pred CCCCHHHH---HHHHHHHH
Confidence 999 885 45666543
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=8.7e-34 Score=217.97 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=128.2
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEe-cCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999987 67888899999999 99999999999999999999999999998854 14444
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee--EEEEcCCcHhHHHHHHhhcc-CCCcHH
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK--ANATGRNSNSIREFLEKNYK-ETSGQE 185 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s~e 185 (199)
++. .+.+.++...|||++++|++ | +|+||.+||+|++.+++ +.++|+|+++++++||+.|+ ++||
T Consensus 76 ~~l----~~~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms-- 143 (171)
T 1m4y_A 76 VEL----AKDWRTDRVLRRLEALLLVA--D----KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLS-- 143 (171)
T ss_dssp HHH----HHHHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCC--
T ss_pred HHH----HHHHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCC--
Confidence 443 33344455578899988888 5 69999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHhhc
Q 029111 186 TVKLAIRALLEV 197 (199)
Q Consensus 186 a~~l~~~~l~~~ 197 (199)
+++++++||+.+
T Consensus 144 ~~~l~~~al~~a 155 (171)
T 1m4y_A 144 AREIVEKAMTIA 155 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 244566666654
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.9e-33 Score=215.64 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=127.8
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccccccceEEe-cCCEEEEEeecHhhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 029111 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (199)
Q Consensus 31 ~t~vgi~~~dgVvla~d~~~~~-~l~~~~~~~ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 108 (199)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+. +.
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~--- 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL--- 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---
Confidence 6899999999999999999987 47788899999999 9999999999999999999999999999985 23
Q ss_pred HHHHHHHHHHhcccCCCcccccceeeeeeeCCCCCceEEEECCCCCeeeee---EEEEcCCcHhHHHHHHhhcc-CCCc-
Q 029111 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK---ANATGRNSNSIREFLEKNYK-ETSG- 183 (199)
Q Consensus 109 a~~ls~~~~~~~~~~~~rp~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~s- 183 (199)
.+.++.+.+.++++...||+ +.+++|+| +|+||++||+|++.+++ ++|+|+|+++++++||+.|+ ++||
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d----~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD----EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC----SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC----CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH
Confidence 33444444555556567776 46888886 69999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHhhc
Q 029111 184 QETVKLAIRALLEV 197 (199)
Q Consensus 184 ~ea~~l~~~~l~~~ 197 (199)
+ +++++||+.+
T Consensus 146 ~---~l~~~al~~a 156 (174)
T 1g3k_A 146 H---EIVEKSLRIA 156 (174)
T ss_dssp H---HHHHHHHHHH
T ss_pred H---HHHHHHHHHH
Confidence 6 5666666654
No 49
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=40.62 E-value=19 Score=26.58 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=27.7
Q ss_pred ccccCCCCcch-hhhhHHHHHhcCCcEEEEEe
Q 029111 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRG 38 (199)
Q Consensus 8 ~~~f~peG~i~-q~eya~~av~~g~t~vgi~~ 38 (199)
+-+||+.|+-- -+|.|+++.++|-++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 55799999855 88999999999999999998
No 50
>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus}
Probab=34.78 E-value=29 Score=30.01 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=42.8
Q ss_pred cccceeeeeeeCCCCCceEEEECCCCCeeeeeEEEEcCCcHhHHHHHHhhccC--CCc-HHHHHHHHHHHhhc
Q 029111 128 FGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE--TSG-QETVKLAIRALLEV 197 (199)
Q Consensus 128 ~~~~~iv~G~d~~~~~p~Ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s-~ea~~l~~~~l~~~ 197 (199)
=.+.++|.|+|.+.+--.+..-|..|...-..+..+. +.|+. .|+ ++|...+..++.++
T Consensus 314 ASVd~LLIGvDTDtDAirVHvPd~~g~~~l~r~vd~~-----------~lY~~T~~l~~~~Ar~~I~~aI~~a 375 (542)
T 2fgy_A 314 ASIDILLIGVDTDTDAIRVHIPDSKGFLNPYRYVDNT-----------VTYAQTLHLAPDEARVIIHEAILNA 375 (542)
T ss_dssp CCEEEEEEEEETTTTEEEEECCCTTSCCCTTCEEEHH-----------HHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cccceeEEeeccCcccEEEecCCcCCcccHHHhhhHH-----------HHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3678999999975666677777999999887777664 44553 566 77777666666543
No 51
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=33.97 E-value=35 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=27.9
Q ss_pred cccCCCCcchhhhhHHHHHhcCCcEEEEEeCC
Q 029111 9 TVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (199)
Q Consensus 9 ~~f~peG~i~q~eya~~av~~g~t~vgi~~~d 40 (199)
|.||++|..---|++..|.+.|-..||++-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 46888999888899999999999999997654
No 52
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=24.45 E-value=75 Score=19.61 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=20.8
Q ss_pred HhHHHHHHhhccC-CCc-HHHHHHHHH
Q 029111 168 NSIREFLEKNYKE-TSG-QETVKLAIR 192 (199)
Q Consensus 168 ~~~~~~Le~~~~~-~~s-~ea~~l~~~ 192 (199)
..|.-+|...|++ +.| .|.++.|+.
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAks 46 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHHh
Confidence 5677889999998 899 999988763
No 53
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=23.76 E-value=88 Score=18.24 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=19.4
Q ss_pred HHHHHHhhcc-CCCc---HHHHHHHHHHHhhcc
Q 029111 170 IREFLEKNYK-ETSG---QETVKLAIRALLEVS 198 (199)
Q Consensus 170 ~~~~Le~~~~-~~~s---~ea~~l~~~~l~~~~ 198 (199)
+..+|...-. ..++ .|-+++|++|+.++.
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF 41 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAF 41 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHc
Confidence 3445555433 4455 677999999998863
No 54
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=21.51 E-value=71 Score=25.19 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCCCCCccc-cCCCCcchhhhhHHHHHhcCCcEEEEEeCC
Q 029111 1 MARYDRAITV-FSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (199)
Q Consensus 1 ~~~yd~~~~~-f~peG~i~q~eya~~av~~g~t~vgi~~~d 40 (199)
|+-.|.+..+ || +|..---|.+..|.+.|-..|||+-.+
T Consensus 1 M~~~DLH~Ht~~S-Dg~~~~~elv~~A~~~Gl~~iaiTDH~ 40 (292)
T 2yb1_A 1 MANIDLHFHSRTS-DGALTPTEVIDRAAARAPALLALTDHD 40 (292)
T ss_dssp -CCEECCBCCTTT-TCSSCHHHHHHHHHTTCCSEEEECCBT
T ss_pred CCccccccCCCcc-CCCCCHHHHHHHHHHCCCCEEEEecCC
Confidence 5667777755 55 999999999999999999999998665
No 55
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=20.58 E-value=1.2e+02 Score=19.74 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=22.3
Q ss_pred HhHHHHHHhhccCCCc-HHHHHHHHHHHh
Q 029111 168 NSIREFLEKNYKETSG-QETVKLAIRALL 195 (199)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~ea~~l~~~~l~ 195 (199)
..++.+.+..+.+.++ ++.+++|.+.|.
T Consensus 52 ~~Iq~If~~SFee~~p~e~c~~iA~kLL~ 80 (90)
T 1u84_A 52 ARIQSIYEFAFDEPIPFPHCLKLARRLLE 80 (90)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence 5566677777777889 999999988876
No 56
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=20.32 E-value=18 Score=22.98 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=27.1
Q ss_pred CCCCccccCCCCcchhhhhH---HH---HH--hcCCcEEEEEeCCEEEEEEecc
Q 029111 4 YDRAITVFSPDGHLFQVEYA---LE---AV--RKGNAAVGVRGTDIVVLGVEKK 49 (199)
Q Consensus 4 yd~~~~~f~peG~i~q~eya---~~---av--~~g~t~vgi~~~dgVvla~d~~ 49 (199)
|...+.+|+|+|.++.++-- .+ ++ ..|..++|.+. ||-++..++.
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-NG~~v~L~~~ 56 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-DGRIVPIDYK 56 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-TTEEECTTCB
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE-CCEEcCCCcc
Confidence 55678899999998876431 22 22 23567888877 4455444443
No 57
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=20.31 E-value=21 Score=24.75 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=12.3
Q ss_pred CCCCCccccCCCCcch
Q 029111 3 RYDRAITVFSPDGHLF 18 (199)
Q Consensus 3 ~yd~~~~~f~peG~i~ 18 (199)
+=|+.+|.|+|.||+.
T Consensus 54 gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 54 FMRHRVTFFNATGRYI 69 (138)
T ss_dssp TCEEEEEEECTTSCEE
T ss_pred cceeEEEEEcCCCcEE
Confidence 3467789999999764
Done!