BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029114
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q043U2|KCY_LACGA Cytidylate kinase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM
           20243) GN=cmk PE=3 SV=1
          Length = 230

 Score = 32.0 bits (71), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 53  EPTTNITAPTTSEEGPVELPQSIFATTDE-PSSLQVATSVLLTGAISVFLFRALRRRAKR 111
           E  + ++A  +  E  VEL + +    D       + T+VL    + +FL  ++  RAKR
Sbjct: 102 ENVSQVSALKSIREKMVELQREMAGKHDVIMDGRDIGTTVLPDAEVKIFLIASVASRAKR 161

Query: 112 AKELKFRSSGAKKSLKD 128
            + L F+  G  + LKD
Sbjct: 162 -RFLDFQEKGIHQDLKD 177


>sp|Q74JL8|KCY_LACJO Cytidylate kinase OS=Lactobacillus johnsonii (strain CNCM I-12250 /
           La1 / NCC 533) GN=cmk PE=3 SV=1
          Length = 230

 Score = 32.0 bits (71), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 53  EPTTNITAPTTSEEGPVELPQSIFATTDE-PSSLQVATSVLLTGAISVFLFRALRRRAKR 111
           E  + ++A  +  E  VEL + +    D       + T+VL    + +FL  ++  RAKR
Sbjct: 102 ENVSQVSALRSIREKMVELQREMAGKHDVIMDGRDIGTTVLPDAEVKIFLIASVASRAKR 161

Query: 112 AKELKFRSSGAKKSLKD 128
            + L F+  G  + LKD
Sbjct: 162 -RFLDFQEKGIHQDLKD 177


>sp|Q4WNV0|CTSD_ASPFU Aspartic-type endopeptidase ctsD OS=Neosartorya fumigata (strain
           ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ctsD
           PE=1 SV=1
          Length = 474

 Score = 31.6 bits (70), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 30  TISLSAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSSLQVAT 89
           T+ L  FP RR     Y +  A EPTT  TA   ++EG   L  S FAT    S  Q   
Sbjct: 67  TLDLKKFPVRRD--NKYKVVLADEPTTPNTA-ALNQEG---LDYSYFATVRVGSQGQQMW 120

Query: 90  SVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLK 127
            VL TG  + ++F +        +   F  + A KSLK
Sbjct: 121 LVLDTGGPNTWVFGSDCTTVACQRHETFGEA-ASKSLK 157


>sp|Q28983|ZAN_PIG Zonadhesin OS=Sus scrofa GN=ZAN PE=1 SV=1
          Length = 2476

 Score = 31.2 bits (69), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 27  QKPTISL--SAFPRRRPLIEPYCLAQAQEPTTNITAPTTSEEGPVELPQSIFATTDEPSS 84
           +KPTI    S  P ++P +        + PT     PTT  EGP   P+     T+ P+S
Sbjct: 363 EKPTIPTEKSTVPTKKPTVFKEPTLPPEGPTVPAERPTTPPEGPAVPPKGPTVLTEWPTS 422


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,328,785
Number of Sequences: 539616
Number of extensions: 2305438
Number of successful extensions: 7732
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7719
Number of HSP's gapped (non-prelim): 25
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)