Query 029114
Match_columns 199
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 12:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 67.5 9.4 0.00032 27.4 4.9 22 86-107 16-37 (79)
2 2rdd_B UPF0092 membrane protei 54.6 13 0.00045 23.0 3.3 16 99-114 18-33 (37)
3 2rdd_B UPF0092 membrane protei 46.8 23 0.00078 21.9 3.5 24 93-116 9-32 (37)
4 1rh5_B Preprotein translocase 45.1 71 0.0024 22.9 6.4 29 153-181 41-69 (74)
5 2ks1_B Epidermal growth factor 44.9 8.6 0.00029 25.3 1.3 23 89-111 19-41 (44)
6 2k9j_B Integrin beta-3; transm 43.6 32 0.0011 22.2 3.9 29 147-175 5-38 (43)
7 3mp7_B Preprotein translocase 38.8 80 0.0027 21.8 5.6 22 153-174 37-58 (61)
8 2knc_B Integrin beta-3; transm 37.4 39 0.0013 24.2 4.0 25 150-174 9-38 (79)
9 2l2t_A Receptor tyrosine-prote 32.9 16 0.00054 24.2 1.1 10 102-111 31-40 (44)
10 2k1k_A Ephrin type-A receptor 31.2 28 0.00097 22.0 2.1 14 89-102 22-35 (38)
11 2oar_A Large-conductance mecha 26.2 30 0.001 28.7 1.9 25 83-107 94-119 (174)
12 3h1n_A Probable glutathione S- 21.4 25 0.00086 27.5 0.6 34 23-56 14-49 (252)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=67.51 E-value=9.4 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 029114 86 QVATSVLLTGAISVFLFRALRR 107 (199)
Q Consensus 86 Q~a~sVllTgai~vflfRslrR 107 (199)
=+..|+++.|++.+++.|.+..
T Consensus 16 gvi~gilliGllllliwk~~~~ 37 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLIT 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999987743
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=54.56 E-value=13 Score=23.02 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 029114 99 VFLFRALRRRAKRAKE 114 (199)
Q Consensus 99 vflfRslrRRakrAKe 114 (199)
+|+.|-=|||.|+.+|
T Consensus 18 Fl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 18 FMILRPQQKRTKEHKK 33 (37)
T ss_dssp HHTHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3445666666666665
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=46.78 E-value=23 Score=21.91 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 029114 93 LTGAISVFLFRALRRRAKRAKELK 116 (199)
Q Consensus 93 lTgai~vflfRslrRRakrAKe~r 116 (199)
+...+++|.|=..|-.-||+||.+
T Consensus 9 ~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 9 LVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444557788999999999999943
No 4
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=45.14 E-value=71 Score=22.87 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029114 153 ALLGGLTAGVIAIILYKFTTTIEAALNRQ 181 (199)
Q Consensus 153 ~l~GaviAG~IA~~LY~fTtaIaaSFa~q 181 (199)
+.+|-++-|.|+|+.|...+-|-.-...+
T Consensus 41 ~~iG~~imG~IGfiIkli~ipIn~ii~~~ 69 (74)
T 1rh5_B 41 TALGISLLGIIGYIIHVPATYIKGILKPP 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 68999999999999999988777665543
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.86 E-value=8.6 Score=25.33 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029114 89 TSVLLTGAISVFLFRALRRRAKR 111 (199)
Q Consensus 89 ~sVllTgai~vflfRslrRRakr 111 (199)
.||++..++...++=.+|||-++
T Consensus 19 gGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 19 GALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhhHhh
Confidence 34444444444444455665544
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=43.57 E-value=32 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 029114 147 PPSPVQALLGGLTAGVI-----AIILYKFTTTIE 175 (199)
Q Consensus 147 ppSPlq~l~GaviAG~I-----A~~LY~fTtaIa 175 (199)
++-+..+..|++++|++ .+.+|++-+.|.
T Consensus 5 ~~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~ 38 (43)
T 2k9j_B 5 KGPDILVVLLSVMGAILLIGLAALLIWKLLITIH 38 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEeehHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 34466677777777654 445577766653
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=38.82 E-value=80 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029114 153 ALLGGLTAGVIAIILYKFTTTI 174 (199)
Q Consensus 153 ~l~GaviAG~IA~~LY~fTtaI 174 (199)
+.+|-++-|.|+|+.|...+-+
T Consensus 37 ~~iG~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 37 TGLGIILIGLIGMLIRIVGILI 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999876543
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.36 E-value=39 Score=24.16 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 029114 150 PVQALLGGLTAGVI-----AIILYKFTTTI 174 (199)
Q Consensus 150 Plq~l~GaviAG~I-----A~~LY~fTtaI 174 (199)
..-+.+|++++|++ .+.+|++-+.|
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666554 44557777776
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=32.90 E-value=16 Score=24.18 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 029114 102 FRALRRRAKR 111 (199)
Q Consensus 102 fRslrRRakr 111 (199)
+=.+|||-++
T Consensus 31 ~~~~RRRr~~ 40 (44)
T 2l2t_A 31 AVYVRRKSIK 40 (44)
T ss_dssp HHHHHTTCSS
T ss_pred HHHhhhhhhh
Confidence 3344555433
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=31.18 E-value=28 Score=21.98 Aligned_cols=14 Identities=29% Similarity=0.100 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 029114 89 TSVLLTGAISVFLF 102 (199)
Q Consensus 89 ~sVllTgai~vflf 102 (199)
.+|+++.++.+|++
T Consensus 22 ~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 22 LGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHe
Confidence 34555555555553
No 11
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=26.22 E-value=30 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHHHH-HHHHHHHHH
Q 029114 83 SSLQVATSVLLTGAIS-VFLFRALRR 107 (199)
Q Consensus 83 spLQ~a~sVllTgai~-vflfRslrR 107 (199)
..||++..+++++++. +++.+.+.|
T Consensus 94 ~Fi~avInFlIIA~vIYFliVk~iNk 119 (174)
T 2oar_A 94 VLLSAAINFFLIAFAVYFLVVLPYNT 119 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999998 445555544
No 12
>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}
Probab=21.44 E-value=25 Score=27.46 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=25.1
Q ss_pred CCCCCCCcceeeecc--CCCCCcchhhhhhccCCCc
Q 029114 23 LNFLQKPTISLSAFP--RRRPLIEPYCLAQAQEPTT 56 (199)
Q Consensus 23 ~~~~~~p~~~~sa~~--~~~~~~~~~~~~~aq~~~~ 56 (199)
-+..+.+++++.-+| +.+-....|+|....++=.
T Consensus 14 ~~~~~~m~~~L~y~~g~~~~a~~vr~~L~~~gi~ye 49 (252)
T 3h1n_A 14 NLYFQGMAYDLWYWDGIPGRGEFVRLALEAGKIPYR 49 (252)
T ss_dssp CCGGGGGCEEEECCSSSCTTHHHHHHHHHHHTCCEE
T ss_pred ceeecCCceEEEeCCCCCcchHHHHHHHHhCCCCce
Confidence 356778888888888 5555566799988888743
Done!