Query 029114
Match_columns 199
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 12:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029114.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029114hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 44.6 8.2 0.0006 27.5 3.2 29 83-111 62-90 (109)
2 d2vv5a3 f.34.1.1 (A:27-112) Me 28.0 57 0.0042 20.6 5.1 25 90-114 7-31 (86)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 24.5 61 0.0044 26.4 5.9 31 127-157 26-56 (472)
4 d1otsa_ f.20.1.1 (A:) Clc chlo 12.3 3.2E+02 0.024 21.6 7.5 69 80-166 56-124 (444)
5 d1yova1 c.111.1.2 (A:6-534) Am 12.1 86 0.0062 26.5 3.9 34 146-190 483-517 (529)
6 d1vyia_ d.293.1.1 (A:) Phospho 11.4 28 0.002 25.3 0.4 38 123-160 46-83 (111)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 10.7 1.9E+02 0.014 18.0 5.2 36 86-121 5-40 (158)
8 d1ml8a_ d.227.1.2 (A:) Hypothe 9.1 1.5E+02 0.011 19.4 3.7 23 146-168 32-54 (134)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 9.0 1.3E+02 0.0092 17.7 2.7 19 86-104 8-26 (34)
10 d1unaa_ d.85.1.1 (A:) GA coat 8.1 52 0.0038 24.1 0.8 20 65-84 70-102 (129)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=44.57 E-value=8.2 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029114 83 SSLQVATSVLLTGAISVFLFRALRRRAKR 111 (199)
Q Consensus 83 spLQ~a~sVllTgai~vflfRslrRRakr 111 (199)
+.+|.+..++.++++.+|++-.--.|.||
T Consensus 62 ~fi~a~InFlIiA~vv~F~vvk~~n~~~~ 90 (109)
T d2oara1 62 VLLSAAINFFLIAFAVYFLVVLPYNTLRK 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999988776665333344444
No 2
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=27.99 E-value=57 Score=20.62 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 029114 90 SVLLTGAISVFLFRALRRRAKRAKE 114 (199)
Q Consensus 90 sVllTgai~vflfRslrRRakrAKe 114 (199)
..++..+++|++.|.++|..+|.-+
T Consensus 7 ~~l~il~i~~~i~~~i~~~~~~~~~ 31 (86)
T d2vv5a3 7 AALAIIIVGLIIARMISNAVNRLMI 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567889999999988887655
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.54 E-value=61 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=26.2
Q ss_pred cHHHHHHHhhcCCCCcCCCCCCChHHHHHHH
Q 029114 127 KDEALDNLKALGSSSIDAKGPPSPVQALLGG 157 (199)
Q Consensus 127 ~Eea~e~lka~~~~~i~~~~ppSPlq~l~Ga 157 (199)
++|+.+.++.-|.+..+++++.|.++-|+..
T Consensus 26 ~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~ 56 (472)
T d1wpga4 26 PDQVKRHLEKYGHNELPAEEGKSLWELVIEQ 56 (472)
T ss_dssp HHHHHHHHHHSCCSSCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHH
Confidence 4677888899999999999999999888765
No 4
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=12.28 E-value=3.2e+02 Score=21.63 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=39.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCccHHHHHHHhhcCCCCcCCCCCCChHHHHHHHHH
Q 029114 80 DEPSSLQVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSGAKKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLT 159 (199)
Q Consensus 80 d~~spLQ~a~sVllTgai~vflfRslrRRakrAKe~r~rssg~~ksl~Eea~e~lka~~~~~i~~~~ppSPlq~l~Gavi 159 (199)
.+..|++....+++.+.++.+....+||.++.++ ++| . .|-.+.+. +..++-+++.+..-++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~-----GsG----i-pev~~~l~--------~~~~~~~~r~~~~k~~ 117 (444)
T d1otsa_ 56 ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAG-----GSG----I-PEIEGALE--------DQRPVRWWRVLPVKFF 117 (444)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGS-----SCS----H-HHHHHHHT--------TCSCCCHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHhhCCccC-----CCC----H-HHHHHHHh--------CCCCCccHHHHHHHHH
Confidence 4456788887777777666666666666544332 233 1 22222222 2245667888877777
Q ss_pred HHHHHHH
Q 029114 160 AGVIAII 166 (199)
Q Consensus 160 AG~IA~~ 166 (199)
+..+++.
T Consensus 118 ~~~~sl~ 124 (444)
T d1otsa_ 118 GGLGTLG 124 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666553
No 5
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.09 E-value=86 Score=26.49 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcceeE
Q 029114 146 GPPSPVQALLGGLTAGVIAIILYKFTTTIEAALNRQTIS-DNFSVR 190 (199)
Q Consensus 146 ~ppSPlq~l~GaviAG~IA~~LY~fTtaIaaSFa~qpls-DN~tar 190 (199)
....|+.|++||+.| +=|-...-+|=+| ||..+.
T Consensus 483 ~el~~vaA~~GGiaa-----------QEviK~iT~qy~Pi~n~~i~ 517 (529)
T d1yova1 483 AEPHTIAAFLGGAAA-----------QEVIKIITKQFVIFNNTYIY 517 (529)
T ss_dssp CCCHHHHHHHHHHHH-----------HHHHHHHHTCSBCCSSEEEE
T ss_pred CcccHHHHHHHHHHH-----------HHHHHHHhcCeeccCCcEEE
Confidence 567899999988875 3444445566677 665544
No 6
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=11.37 E-value=28 Score=25.27 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCccHHHHHHHhhcCCCCcCCCCCCChHHHHHHHHHH
Q 029114 123 KKSLKDEALDNLKALGSSSIDAKGPPSPVQALLGGLTA 160 (199)
Q Consensus 123 ~ksl~Eea~e~lka~~~~~i~~~~ppSPlq~l~GaviA 160 (199)
|-++++--++.-.-+|-.++....---|+||.+|.|..
T Consensus 46 KmNLDdIVk~ak~vPgv~r~a~~G~kLPLRCiLG~Va~ 83 (111)
T d1vyia_ 46 KMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGWVAL 83 (111)
T ss_dssp CCCHHHHHHHHTTSTTHHHHHHTTCCCCHHHHHHHHHH
T ss_pred hccHHHHHHHhccCCcHHHHHhhcCccchhhheehhcc
Confidence 33555544443333333455556667799999998753
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.73 E-value=1.9e+02 Score=18.04 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhccC
Q 029114 86 QVATSVLLTGAISVFLFRALRRRAKRAKELKFRSSG 121 (199)
Q Consensus 86 Q~a~sVllTgai~vflfRslrRRakrAKe~r~rssg 121 (199)
-...-|+.+|.++.+.+..+++-.+|+|..+..+..
T Consensus 5 ELlVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l 40 (158)
T d2pila_ 5 ELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLA 40 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888887775554433
No 8
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=9.10 E-value=1.5e+02 Score=19.42 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q 029114 146 GPPSPVQALLGGLTAGVIAIILY 168 (199)
Q Consensus 146 ~ppSPlq~l~GaviAG~IA~~LY 168 (199)
.-|||.+-|++|+.+-....+.+
T Consensus 32 ~gp~P~elllaal~~C~~~~~~~ 54 (134)
T d1ml8a_ 32 KAPSPMEMVLMAAGGCSAIDVVS 54 (134)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHH
Confidence 56899999999987765544443
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.99 E-value=1.3e+02 Score=17.67 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029114 86 QVATSVLLTGAISVFLFRA 104 (199)
Q Consensus 86 Q~a~sVllTgai~vflfRs 104 (199)
-+++|.+.++.+++||.-+
T Consensus 8 ~tv~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 8 ATVAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eehhhhhhHhheeeeeeee
Confidence 3567888888999998743
No 10
>d1unaa_ d.85.1.1 (A:) GA coat protein {Bacteriophage GA [TaxId: 12018]}
Probab=8.12 E-value=52 Score=24.14 Aligned_cols=20 Identities=45% Similarity=0.579 Sum_probs=11.3
Q ss_pred CCCccccC-------------CccccCCCCCCh
Q 029114 65 EEGPVELP-------------QSIFATTDEPSS 84 (199)
Q Consensus 65 ~~gpiel~-------------~~~~~~~d~~sp 84 (199)
.-|-|||| --||+++||-+-
T Consensus 70 ~v~gvelpvaawrsy~~meltipifat~dd~~l 102 (129)
T d1unaa_ 70 VVNGVELPVSAWKAYASIDLTIPIFAATDDVTV 102 (129)
T ss_dssp -----CCSSCCCEEEEEEEEEEECCCTTCCCHH
T ss_pred eeCCEEccHHHHHhhhcceEeeeEEecCCCeee
Confidence 45678888 139999999753
Done!