BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029115
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 125 LADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLA 184
LADQ A A +DR G A + L + GC DP + YDP A
Sbjct: 410 LADQYMSSAALGDA----NKDAIDRGTFFGKAAQQ----VSLPVAQGCTDPEAKNYDPTA 461
Query: 185 NVDDGSC 191
DDGSC
Sbjct: 462 RSDDGSC 468
>sp|Q2KJC3|MPEG1_BOVIN Macrophage-expressed gene 1 protein OS=Bos taurus GN=MPEG1 PE=2
SV=2
Length = 717
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 166 LNLVPGCMDPSSPLYDPLANVDDGSC 191
+N PGC D SSP ++ AN DDGSC
Sbjct: 344 VNTYPGCTDLSSPNFNFQANTDDGSC 369
>sp|Q2M385|MPEG1_HUMAN Macrophage-expressed gene 1 protein OS=Homo sapiens GN=MPEG1 PE=2
SV=1
Length = 716
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 166 LNLVPGCMDPSSPLYDPLANVDDGSC 191
N PGC D +SP ++ AN DDGSC
Sbjct: 344 FNTYPGCTDLNSPNFNFQANTDDGSC 369
>sp|Q5RBP9|MPEG1_PONAB Macrophage-expressed gene 1 protein OS=Pongo abelii GN=MPEG1 PE=2
SV=1
Length = 716
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 166 LNLVPGCMDPSSPLYDPLANVDDGSC 191
N PGC D +SP ++ AN DDGSC
Sbjct: 344 FNTYPGCTDLNSPNFNFQANTDDGSC 369
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 128 QLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVD 187
QL+ E A+ + + R G AA+ ++ + GC DP + YDP A D
Sbjct: 411 QLADKYMSEAALGDANNDAIKRGTFYGGQAAQ--QVGNVPVPEGCTDPQATNYDPTARSD 468
Query: 188 DGSC 191
DGSC
Sbjct: 469 DGSC 472
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 154 GNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSC 191
G +G + +L + GC DP + +DP A DDG+C
Sbjct: 433 GTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTC 470
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 154 GNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSC 191
G+ +G + L + GC D ++ YDP A DDGSC
Sbjct: 423 GSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSC 460
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 128 QLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVD 187
QL++ E A+ + G A + G+ L + GC DP + +DP A D
Sbjct: 402 QLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGN---LPVPEGCTDPVAKNFDPTARSD 458
Query: 188 DGSC 191
DGSC
Sbjct: 459 DGSC 462
>sp|P23671|AMY_CLOAB Alpha-amylase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=amyA PE=3
SV=2
Length = 760
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 20 MSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQ 79
+SG I+YN N G NG N + AM++ + G F+
Sbjct: 583 VSGNNFTIYYNGNLANS-SNVSLHWGVNGWSNMQNL------AMVKDSNG-----FWEAT 630
Query: 80 ICVPKHAINLIFSFTNGVEWD 100
I +P + L F FTNG WD
Sbjct: 631 IAIPASSNTLNFCFTNGSSWD 651
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.143 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,676,390
Number of Sequences: 539616
Number of extensions: 4016387
Number of successful extensions: 5343
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5334
Number of HSP's gapped (non-prelim): 11
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)