Query 029115
Match_columns 199
No_of_seqs 48 out of 50
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 12:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c3v_A Alpha-amylase G-6; carb 93.9 0.06 2.1E-06 40.5 4.2 71 19-102 6-77 (102)
2 2laa_A Beta/alpha-amylase; SBD 91.6 0.18 6.1E-06 37.9 4.0 67 21-102 3-72 (104)
3 2e9g_A AP-1 complex subunit ga 31.9 68 0.0023 23.9 4.7 29 87-115 40-69 (131)
4 3d6x_A (3R)-hydroxymyristoyl-[ 29.4 8.6 0.0003 27.5 -0.6 20 35-57 37-57 (146)
5 3mnm_A ADP-ribosylation factor 29.0 82 0.0028 23.4 4.7 30 85-114 31-61 (123)
6 2rp4_A Transcription factor P5 27.1 27 0.00094 25.7 1.7 13 100-112 19-31 (76)
7 1gyu_A Adapter-related protein 26.5 58 0.002 24.8 3.5 29 87-115 49-78 (140)
8 1iu1_A Gamma1-adaptin; coated 25.3 1.1E+02 0.0037 23.4 4.9 29 87-115 55-84 (146)
9 3zy7_A AP-1 complex subunit ga 23.4 1.4E+02 0.0048 21.9 5.0 29 86-114 30-59 (122)
10 1klf_A FIMC chaperone, chapero 23.1 45 0.0016 26.5 2.4 30 6-35 79-121 (205)
No 1
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*
Probab=93.91 E-value=0.06 Score=40.45 Aligned_cols=71 Identities=17% Similarity=0.359 Sum_probs=44.9
Q ss_pred CCCCCceEEEEcccccCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC-
Q 029115 19 PMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV- 97 (199)
Q Consensus 19 P~sGe~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGGePR~M~~k~RG~ad~piyti~I~vPkHa~~L~FSFTnG~- 97 (199)
|..|+.++|||+.. -=.++-.||.+- |.+.+.= | -.|.+. .|.=-++..|.+|. +..|+|-|+||.
T Consensus 6 p~~g~~vTvyY~sg--~~~~ylHy~~~~-g~Wt~vp---g--v~M~~~----~~~Gw~~~TI~~~~-~~~l~~~F~dG~~ 72 (102)
T 2c3v_A 6 SGDATDITIYYKTG--WTHPHIHYSLNQ-GAWTTLP---G--VPLTKS----EXEGXVKVTIEAEE-GSQLRAAFNNGSG 72 (102)
T ss_dssp --CCCSEEEEEECC--CSSCEEEEEETT-CCBCCTT---C--EECEEC----SSTTEEEEEECCCT-TCEEEEEEECSSS
T ss_pred CCCCCEEEEEEcCC--CCcEEEEEeCCC-CCcccCC---C--cCcccc----ccCCceEEEEecCC-CceEEEEEeCCCc
Confidence 44499999999933 344556666332 3455531 1 124332 24445688888884 689999999999
Q ss_pred CCCCc
Q 029115 98 EWDGP 102 (199)
Q Consensus 98 ~WDGp 102 (199)
.||-.
T Consensus 73 ~WDNN 77 (102)
T 2c3v_A 73 QWDNN 77 (102)
T ss_dssp CEECG
T ss_pred ccccC
Confidence 79954
No 2
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A
Probab=91.60 E-value=0.18 Score=37.91 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCCceEEEEcccccCCCCCCceeeeecCCCCCccccCCchh-hhhhhhhCCCCCCce-EEEeeeccceeeEEEEeecCC-
Q 029115 21 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR-AMLRKNRGQNDSPFY-TIQICVPKHAINLIFSFTNGV- 97 (199)
Q Consensus 21 sGe~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGGePR-~M~~k~RG~ad~piy-ti~I~vPkHa~~L~FSFTnG~- 97 (199)
+|+.++|||++.+++. .-.||.+- |..+.+ |- .|.+. .-|-| +..|.||. +..|+|-|+||.
T Consensus 3 ~g~~vtiyY~~g~~~v--ylHyg~~~-g~Wt~~------~~v~M~~~-----~~~gw~~~TI~l~~-g~~~~~~F~dG~~ 67 (104)
T 2laa_A 3 TGNKVTIYYKKGFNSP--YIHYRPAG-GSWTAA------PGVKMQDA-----EISGYAKITVDIGS-ASQLEAAFNDGNN 67 (104)
T ss_dssp CCCEEEEEEECSSSSC--EEEEEETT-SCCCSS------SCEECEEE-----TTTTEEEEEEECTT-CSCEEEEEECSSS
T ss_pred CCCEEEEEEcCCCCcE--EEEEcCCC-CCCCcC------Cccccccc-----cCCCeEEEEEECCC-CCEEEEEEeCCCC
Confidence 5899999999755543 34555222 456653 21 23221 11567 69999996 789999999998
Q ss_pred CCCCc
Q 029115 98 EWDGP 102 (199)
Q Consensus 98 ~WDGp 102 (199)
.||-.
T Consensus 68 ~WDNn 72 (104)
T 2laa_A 68 NWDSN 72 (104)
T ss_dssp CEEST
T ss_pred cCcCC
Confidence 79965
No 3
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.92 E-value=68 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 029115 87 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 115 (199)
Q Consensus 87 ~~L~FSFTnG~~W-DGpY~l~f~vp~~~~n 115 (199)
+.+..+|+|-..- =--+.+|+.|||.|+=
T Consensus 40 ~~i~~~~~N~s~~~it~f~fQaAVPK~~kL 69 (131)
T 2e9g_A 40 LLITITATNFSEGDVTHFICQAAVPKSLQL 69 (131)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCC
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 6677788875442 2347899999998864
No 4
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=29.42 E-value=8.6 Score=27.47 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=16.8
Q ss_pred CCCCCCceeeeecCCC-CCccccC
Q 029115 35 KLLPNEDFGIGFNGGF-NQPFMCG 57 (199)
Q Consensus 35 ~l~pn~~fGiaFNGgF-NQPiMCG 57 (199)
.+++|+.| |.|.| +||||=|
T Consensus 37 ~v~~~~~~---f~ghFp~~Pi~PG 57 (146)
T 3d6x_A 37 NISISDHV---FMGHFPGHPIYPG 57 (146)
T ss_dssp ECCTTBTH---HHHSCTTSCCCCH
T ss_pred EcCCCCCe---ecCCCCCCCcCch
Confidence 47788877 99999 7999977
No 5
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=28.98 E-value=82 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=21.9
Q ss_pred ceeeEEEEeecCCCC-CCceeEEEecCcccc
Q 029115 85 HAINLIFSFTNGVEW-DGPYRIKFLVPRAWR 114 (199)
Q Consensus 85 Ha~~L~FSFTnG~~W-DGpY~l~f~vp~~~~ 114 (199)
..+.+..+|+|-... =--+.+|..|||.|+
T Consensus 31 ~~~~i~~~fsN~s~~~it~f~fqaAVPKs~k 61 (123)
T 3mnm_A 31 SVIRIXSFFTNLSSSPISNLVFLLAVPKSMS 61 (123)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEEEECCTTSE
T ss_pred CeEEEEEEEecCCCCccccEEEEEecCcccE
Confidence 457788888886543 234789999999865
No 6
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=27.05 E-value=27 Score=25.71 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=12.2
Q ss_pred CCceeEEEecCcc
Q 029115 100 DGPYRIKFLVPRA 112 (199)
Q Consensus 100 DGpY~l~f~vp~~ 112 (199)
||.|||.+.+|++
T Consensus 19 dGdYrL~itcpkK 31 (76)
T 2rp4_A 19 DGDYRLAITCPNK 31 (76)
T ss_dssp TTBEEEEEEESCH
T ss_pred CCceEEEEEeCcH
Confidence 8999999999986
No 7
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=26.47 E-value=58 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 029115 87 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 115 (199)
Q Consensus 87 ~~L~FSFTnG~~W-DGpY~l~f~vp~~~~n 115 (199)
+.+..+|+|-..- =--+.+|+.|||.|+=
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kL 78 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQL 78 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEE
Confidence 5667788875432 2347899999998863
No 8
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=25.35 E-value=1.1e+02 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.7
Q ss_pred eeEEEEeecCCCC-CCceeEEEecCccccc
Q 029115 87 INLIFSFTNGVEW-DGPYRIKFLVPRAWRN 115 (199)
Q Consensus 87 ~~L~FSFTnG~~W-DGpY~l~f~vp~~~~n 115 (199)
+.+..+|+|-..- =--+.+|+.|||.|+=
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kL 84 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQL 84 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEE
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEE
Confidence 6677788885432 2347899999998864
No 9
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=23.41 E-value=1.4e+02 Score=21.93 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=21.4
Q ss_pred eeeEEEEeecCCCC-CCceeEEEecCcccc
Q 029115 86 AINLIFSFTNGVEW-DGPYRIKFLVPRAWR 114 (199)
Q Consensus 86 a~~L~FSFTnG~~W-DGpY~l~f~vp~~~~ 114 (199)
.+.+..+|+|-..- =--+.+|..|||.|+
T Consensus 30 ~~~i~~~~~N~s~~~it~f~fqaAVPKs~k 59 (122)
T 3zy7_A 30 VTVITIQASNSTELDMTDFVFQAAVPKTFQ 59 (122)
T ss_dssp EEEEEEEEEECSSSCBEEEEEEEECCTTSE
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccE
Confidence 36788888886543 234789999999875
No 10
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=23.14 E-value=45 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.757 Sum_probs=24.1
Q ss_pred CcceEeEecCCCCCCCCC-------------ceEEEEcccccC
Q 029115 6 KAPVYWKTMNGLPPMSGE-------------KLKIFYNPYAKK 35 (199)
Q Consensus 6 ~apVyWkt~nGlpP~sGe-------------~L~lfyNp~a~~ 35 (199)
|-.+||=....+||.+.. ++||||-|++-+
T Consensus 79 rEslf~lnv~eIPp~~~~~~~~n~lqia~r~riKlFyRP~~l~ 121 (205)
T 1klf_A 79 RESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLA 121 (205)
T ss_dssp SCEEEEEEEEEECCCCTTSTTSCEEEEEEEEEEEEEEECTTCS
T ss_pred ceEEEEEEeEecCCCCccccCCceEEEEeeeeeeEEEcccccC
Confidence 456999999999997532 589999999764
Done!