Query 029116
Match_columns 199
No_of_seqs 139 out of 1055
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00140 rpl6 ribosomal protei 100.0 2.8E-69 6E-74 442.2 24.4 178 20-197 1-178 (178)
2 PRK05498 rplF 50S ribosomal pr 100.0 2.8E-67 6E-72 430.4 25.0 178 20-197 1-178 (178)
3 TIGR03654 L6_bact ribosomal pr 100.0 1.7E-66 3.6E-71 424.8 24.5 175 21-195 1-175 (175)
4 COG0097 RplF Ribosomal protein 100.0 3E-65 6.6E-70 415.2 22.3 177 20-197 1-178 (178)
5 KOG3254 Mitochondrial/chloropl 100.0 2.7E-55 5.9E-60 354.3 15.0 191 7-197 18-211 (211)
6 PRK05518 rpl6p 50S ribosomal p 100.0 7.5E-49 1.6E-53 321.6 20.4 149 24-173 6-159 (180)
7 TIGR03653 arch_L6P archaeal ri 100.0 1.2E-48 2.6E-53 318.0 21.4 157 26-183 2-167 (170)
8 PTZ00179 60S ribosomal protein 100.0 1.6E-47 3.5E-52 316.0 20.4 151 23-173 4-165 (189)
9 PTZ00027 60S ribosomal protein 100.0 2.3E-47 4.9E-52 315.3 20.7 150 25-174 7-167 (190)
10 KOG3255 60S ribosomal protein 99.8 6.6E-20 1.4E-24 149.8 1.8 151 20-171 1-164 (179)
11 PF00347 Ribosomal_L6: Ribosom 99.8 2.4E-18 5.2E-23 121.9 8.3 72 30-101 1-77 (77)
12 PF00347 Ribosomal_L6: Ribosom 98.6 1.2E-08 2.7E-13 71.9 0.6 71 110-183 2-76 (77)
13 cd06479 ACD_HspB7_like Alpha c 74.0 9.6 0.00021 27.2 5.1 42 31-72 21-78 (81)
14 cd06481 ACD_HspB9_like Alpha c 64.9 13 0.00029 26.6 4.2 19 31-49 20-38 (87)
15 cd00298 ACD_sHsps_p23-like Thi 64.5 27 0.00058 22.5 5.5 42 31-72 19-77 (80)
16 cd02393 PNPase_KH Polynucleoti 61.8 20 0.00044 23.8 4.4 30 138-167 31-60 (61)
17 cd06470 ACD_IbpA-B_like Alpha- 61.0 21 0.00046 25.4 4.7 18 31-48 24-41 (90)
18 PF00011 HSP20: Hsp20/alpha cr 60.6 32 0.00068 24.6 5.6 45 31-75 20-87 (102)
19 cd06471 ACD_LpsHSP_like Group 55.9 40 0.00088 23.8 5.5 18 32-49 24-41 (93)
20 PTZ00027 60S ribosomal protein 55.7 12 0.00027 31.0 3.1 53 39-96 107-165 (190)
21 CHL00140 rpl6 ribosomal protei 55.5 12 0.00027 30.6 3.0 55 34-93 94-150 (178)
22 PF12970 DUF3858: Domain of Un 54.1 70 0.0015 24.6 6.7 43 26-74 41-83 (116)
23 COG0097 RplF Ribosomal protein 50.3 17 0.00037 30.0 3.0 24 28-51 115-139 (178)
24 TIGR03654 L6_bact ribosomal pr 50.1 17 0.00037 29.6 3.0 54 35-93 94-149 (175)
25 TIGR03653 arch_L6P archaeal ri 48.3 1.5E+02 0.0032 24.1 9.3 57 35-96 93-152 (170)
26 cd06469 p23_DYX1C1_like p23_li 46.0 90 0.0019 20.9 6.6 44 31-74 19-67 (78)
27 PRK05498 rplF 50S ribosomal pr 45.6 22 0.00047 29.0 3.0 54 35-93 95-150 (178)
28 cd06472 ACD_ScHsp26_like Alpha 43.7 98 0.0021 21.8 5.9 18 31-48 22-40 (92)
29 PRK14420 acylphosphatase; Prov 43.7 3.8 8.3E-05 29.7 -1.6 24 148-173 42-65 (91)
30 COG1072 CoaA Panthothenate kin 43.2 16 0.00036 32.3 2.0 31 126-157 167-197 (283)
31 cd06477 ACD_HspB3_Like Alpha c 42.6 17 0.00037 26.0 1.7 19 31-49 20-38 (83)
32 cd06464 ACD_sHsps-like Alpha-c 41.1 1E+02 0.0023 20.7 5.6 20 31-50 20-39 (88)
33 cd06480 ACD_HspB8_like Alpha-c 41.1 18 0.0004 26.4 1.7 20 31-50 28-47 (91)
34 COG0071 IbpA Molecular chapero 40.7 78 0.0017 24.6 5.3 45 31-75 63-132 (146)
35 cd06498 ACD_alphaB-crystallin_ 39.7 20 0.00043 25.5 1.7 18 31-48 20-37 (84)
36 cd06478 ACD_HspB4-5-6 Alpha-cr 39.7 24 0.00052 24.9 2.1 18 31-48 20-37 (83)
37 cd06476 ACD_HspB2_like Alpha c 38.7 21 0.00046 25.4 1.7 19 31-49 20-38 (83)
38 cd06497 ACD_alphaA-crystallin_ 37.1 23 0.0005 25.3 1.7 18 31-48 23-40 (86)
39 PF11280 DUF3081: Protein of u 35.8 32 0.0007 24.7 2.2 40 97-136 18-62 (79)
40 PRK14434 acylphosphatase; Prov 34.9 9.4 0.0002 27.9 -0.7 25 148-172 43-67 (92)
41 smart00099 btg1 tob/btg1 famil 33.6 50 0.0011 25.1 3.0 29 155-183 22-59 (108)
42 cd06526 metazoan_ACD Alpha-cry 33.4 29 0.00064 24.2 1.7 19 31-49 20-38 (83)
43 cd06482 ACD_HspB10 Alpha cryst 33.3 29 0.00063 25.0 1.7 18 31-48 21-38 (87)
44 cd01231 PH_Lnk LNK-family Plec 32.9 86 0.0019 23.8 4.1 38 132-169 66-106 (107)
45 PRK14446 acylphosphatase; Prov 31.6 17 0.00037 26.4 0.2 19 149-168 43-61 (88)
46 PTZ00179 60S ribosomal protein 31.3 3E+02 0.0066 22.7 7.8 57 35-96 100-164 (189)
47 PF12646 DUF3783: Domain of un 30.5 63 0.0014 21.4 2.8 30 149-178 3-32 (58)
48 cd06475 ACD_HspB1_like Alpha c 30.3 38 0.00081 24.2 1.8 18 31-48 23-40 (86)
49 PRK05518 rpl6p 50S ribosomal p 28.8 3.3E+02 0.0071 22.3 9.7 72 35-111 99-173 (180)
50 PF00013 KH_1: KH domain syndr 28.7 1.4E+02 0.003 19.0 4.3 28 139-167 30-60 (60)
51 PF09840 DUF2067: Uncharacteri 26.8 2E+02 0.0043 23.9 5.8 89 59-169 26-127 (190)
52 PF14250 AbrB-like: AbrB-like 26.6 96 0.0021 21.9 3.2 13 120-132 57-69 (71)
53 PF00712 DNA_pol3_beta: DNA po 25.8 2.8E+02 0.006 20.5 6.4 48 25-72 24-71 (120)
54 cd02394 vigilin_like_KH K homo 24.7 1.5E+02 0.0033 19.0 3.9 20 147-167 42-61 (62)
55 cd06463 p23_like Proteins cont 22.0 2.4E+02 0.0052 18.4 6.5 44 31-74 19-72 (84)
56 PRK10743 heat shock protein Ib 21.1 63 0.0014 25.3 1.7 17 32-48 59-75 (137)
57 PRK11597 heat shock chaperone 20.8 64 0.0014 25.5 1.7 17 32-48 57-73 (142)
58 PF09288 UBA_3: Fungal ubiquit 20.7 42 0.00092 22.5 0.5 17 149-165 2-18 (55)
59 PF01330 RuvA_N: RuvA N termin 20.3 86 0.0019 20.7 2.0 16 103-118 16-31 (61)
60 PF14324 PINIT: PINIT domain; 20.0 59 0.0013 25.4 1.3 33 18-50 67-101 (144)
No 1
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=2.8e-69 Score=442.21 Aligned_cols=178 Identities=57% Similarity=0.971 Sum_probs=175.2
Q ss_pred ccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccc
Q 029116 20 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 99 (199)
Q Consensus 20 ~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt 99 (199)
|||||+.||.||+||+|+++++.|+|+||+|+|+++|++.++++.+++.+.+..|+++++++|+|||+||||+|||+|||
T Consensus 1 msrig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt 80 (178)
T CHL00140 1 MSRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPDLITIEIQDNSLFVSKKDESKKARALHGLYRTLINNMVIGVS 80 (178)
T ss_pred CCcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCCCeEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 029116 100 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 179 (199)
Q Consensus 100 ~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykgk 179 (199)
+||+++|+++|+||||.++++.|.|+|||||++.++||+||+|+|+++|+|+|+|+|+|+|+||||+||++|+|||||||
T Consensus 81 ~Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (178)
T CHL00140 81 EGFEKKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKELVGQFAAKIRSVRPPEPYKGK 160 (178)
T ss_pred cCceEEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccC
Q 029116 180 GVKYVDEVIRRKEGKAGK 197 (199)
Q Consensus 180 Gi~~~~e~i~~K~gKk~k 197 (199)
||+|.||+|++|+||+++
T Consensus 161 GI~y~~e~i~~K~gK~~~ 178 (178)
T CHL00140 161 GIRYKGEVIRRKAGKAGK 178 (178)
T ss_pred cEeECCEEEEEecccCCC
Confidence 999999999999999954
No 2
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=2.8e-67 Score=430.44 Aligned_cols=178 Identities=54% Similarity=0.917 Sum_probs=174.7
Q ss_pred ccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccc
Q 029116 20 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 99 (199)
Q Consensus 20 ~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt 99 (199)
|||||+.+|.||++|+|+++++.|+|+||+|+|+++|++.++++.+++.|.++.|+++++++|+|||++|||+|||+||+
T Consensus 1 ms~ig~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~GVt 80 (178)
T PRK05498 1 MSRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNPDVTVKVEDNEITVTRPDDSKKARALHGTTRALINNMVVGVT 80 (178)
T ss_pred CCcccccceecCCCCEEEEECCEEEEECCCEEEEEEcCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 029116 100 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 179 (199)
Q Consensus 100 ~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykgk 179 (199)
.||+++|+++|+||+|.++++.|.++|||||++.++||+||+|+++++|+|+|+|+|+|+|+||||+||++|+|||||||
T Consensus 81 ~Gf~~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dke~Vg~~AA~Ir~~r~pe~Ykgk 160 (178)
T PRK05498 81 EGFEKKLEIVGVGYRAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAEIRSYRPPEPYKGK 160 (178)
T ss_pred CCeEEEEEEEeEEEEEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccC
Q 029116 180 GVKYVDEVIRRKEGKAGK 197 (199)
Q Consensus 180 Gi~~~~e~i~~K~gKk~k 197 (199)
||+|.||+|++|+|||++
T Consensus 161 Gi~~~~e~i~~K~gKk~~ 178 (178)
T PRK05498 161 GIRYAGEVVRRKEGKKKK 178 (178)
T ss_pred cEeECCEEEEEecccCCC
Confidence 999999999999999864
No 3
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=1.7e-66 Score=424.79 Aligned_cols=175 Identities=55% Similarity=0.914 Sum_probs=172.4
Q ss_pred cccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhccccccc
Q 029116 21 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 100 (199)
Q Consensus 21 Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~ 100 (199)
||||+.+|.||++|+|+++++.|+|+||+|+|+++|++.+.++.++|.+.++.|+++++++|+|||++|||+|||+|||+
T Consensus 1 s~ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~~~i~i~~~~~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~ 80 (175)
T TIGR03654 1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHPGVTVKVEDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSE 80 (175)
T ss_pred CcccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcCCCeEEEEECCEEEEEecCCCHHHHHHHHHHHHHHHHHhheecc
Confidence 89999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCc
Q 029116 101 GFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 180 (199)
Q Consensus 101 Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~YkgkG 180 (199)
||+++|+++|+||||.++++.|.++|||||++.++||+||+|+++++|+|+|+|+|+|+|+||||+||++|+||||||||
T Consensus 81 Gf~~~L~lvGvgyrv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKgkG 160 (175)
T TIGR03654 81 GFEKKLEIVGVGYRAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQLVGQVAAEIRAFRKPEPYKGKG 160 (175)
T ss_pred CcEEEEEEEEEEEEEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCHHHHHHHHHHHhccCCCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEeccCcc
Q 029116 181 VKYVDEVIRRKEGKA 195 (199)
Q Consensus 181 i~~~~e~i~~K~gKk 195 (199)
|+|.||+|+||+|||
T Consensus 161 i~~~~e~I~~K~gKk 175 (175)
T TIGR03654 161 IRYAGEVVRRKEGKK 175 (175)
T ss_pred EeECCEEEEEeCcCC
Confidence 999999999999996
No 4
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-65 Score=415.19 Aligned_cols=177 Identities=55% Similarity=0.881 Sum_probs=170.1
Q ss_pred ccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCe-EEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhccccc
Q 029116 20 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREV-KVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGV 98 (199)
Q Consensus 20 ~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i-~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GV 98 (199)
|||||+.||.+|+||+|+++++.++|+||+|+|+++|++.+ .++.+++.+.+..++. ++.+|+|||+||||+||++||
T Consensus 1 Msri~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~~~~~~~vv~~~~~-k~~~a~~Gt~rali~Nmv~GV 79 (178)
T COG0097 1 MSRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVEVEDNILVVRPVDG-KRKRALHGTVRALINNMVKGV 79 (178)
T ss_pred CCceeeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEEecCCEEEEeeccc-chhHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999866 8888888888887777 666699999999999999999
Q ss_pred ccceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCcccc
Q 029116 99 SKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKG 178 (199)
Q Consensus 99 t~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykg 178 (199)
|+||+|+|+++|+||||.++++.|.++||||||+.++||+|++++++++|+|+|+|+|||+||||||+||++|+||||||
T Consensus 80 teGf~~kL~ivgvgyra~v~g~~l~l~LG~shp~~~~ip~gi~v~v~~~t~I~v~GidKe~VGQ~AA~Ir~~r~pepykg 159 (178)
T COG0097 80 TEGFEKKLEIVGVGYRAQVVGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKELVGQVAANIRAARKPEPYKG 159 (178)
T ss_pred ccceEEEEEEEEecceeEEeccEEEEeecccCCeEEECCCCeEEEecCCCEEEEEcCCHHHHhHHHHHHHhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCeEEEeccCcccC
Q 029116 179 KGVKYVDEVIRRKEGKAGK 197 (199)
Q Consensus 179 kGi~~~~e~i~~K~gKk~k 197 (199)
|||||.||+|++|+||++|
T Consensus 160 Kgi~ydge~I~~K~gK~~k 178 (178)
T COG0097 160 KGIRYDGEYIRRKEGKTGK 178 (178)
T ss_pred cceEEcCEEEEEeccccCC
Confidence 9999999999999999864
No 5
>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-55 Score=354.31 Aligned_cols=191 Identities=41% Similarity=0.674 Sum_probs=176.7
Q ss_pred cccccccccccccccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEe---CCEEEEEeccchhhhhhH
Q 029116 7 NRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDRE---DSFLRVRKTVETRRANQM 83 (199)
Q Consensus 7 ~~~~~~~~~~~~~~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~---~~~i~i~~~~~~k~~~a~ 83 (199)
-|.|++=++.++..+.+|++.|..|++..-++++..++|+||+|+|..++|++++++.+ .+.+......++|++++|
T Consensus 18 ~r~~~~~~~~p~aqv~~~~k~i~~~e~k~~~lege~l~vkGP~gel~l~~P~~l~L~~dkk~~g~~~~~k~~etkkqr~m 97 (211)
T KOG3254|consen 18 ARLGMNFTTCPAAQVYVGKKEIIVKENKQRDLEGEQLQVKGPHGELNLRFPNYLNLSNDKKKSGMDANIKKQETKKQRAM 97 (211)
T ss_pred eccceeeeecchHheeecceeEEeehhhccccccCceEeeCCcceeeccCCccccccchhhhcceeeeecchhhHHHHHH
Confidence 46677777777779999999999999999999999999999999999999998888543 234444445678999999
Q ss_pred HHHHHHHHhhcccccccceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHH
Q 029116 84 HGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQF 163 (199)
Q Consensus 84 ~gT~~sli~Nmi~GVt~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~ 163 (199)
|||+|||+.||+.|||.||...|+|||+||||.++|..|+++|||||++.+.||++|.|+++.||.|+++|+|+|.|+||
T Consensus 98 wgt~R~l~~N~v~GVt~g~~k~l~lVGvGYRa~legk~l~lklG~S~~v~l~iP~~v~Vk~p~ptsl~~~G~dKq~V~qF 177 (211)
T KOG3254|consen 98 WGTFRALLANNVKGVTMGFLKILKLVGVGYRASLEGKFLHLKLGYSHDVLLSIPTDVQVKNPTPTSLVLRGIDKQKVTQF 177 (211)
T ss_pred HHHHHHHHhccchhhhhhhhheeeEEeeeeEEEecCceEEEEeccccceeecCCCceEEecCCCCEEEEecccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCccccCceeecCeEEEeccCcccC
Q 029116 164 AASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGK 197 (199)
Q Consensus 164 AA~Ir~~r~pe~YkgkGi~~~~e~i~~K~gKk~k 197 (199)
||.+|+|+||||||||||+|.||++++|+||+.|
T Consensus 178 AAkvRsfkpPEPYKGKGIyv~dE~vklK~kK~~k 211 (211)
T KOG3254|consen 178 AAKVRSFKPPEPYKGKGIYVDDEKVKLKAKKSIK 211 (211)
T ss_pred HHHHhccCCCCCcCCCceEeccceeeecccccCC
Confidence 9999999999999999999999999999999764
No 6
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=100.00 E-value=7.5e-49 Score=321.59 Aligned_cols=149 Identities=33% Similarity=0.522 Sum_probs=144.0
Q ss_pred ccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccce
Q 029116 24 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGF 102 (199)
Q Consensus 24 gk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~Gf 102 (199)
-++||.||++|+|+++++.|+|+||+|+|+++|++ .++++.++|.+.+..|+++++++|+|||+||||+|||+|||+||
T Consensus 6 ~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~kk~ra~~gt~rslI~NmI~GVt~Gf 85 (180)
T PRK05518 6 IREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVEDGKVVIETEFARKKTKAMVGTFASHIKNMIKGVTEGF 85 (180)
T ss_pred ccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHhhheecccce
Confidence 46799999999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeee--EEEEeCCeEEE--EcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCC
Q 029116 103 EKKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPP 173 (199)
Q Consensus 103 ~~~L~lvGvGy--rv~~~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~p 173 (199)
+++|+++|+|| ||.++|+.|.+ +||||||+.++||+||++++++ |+|+|+|+|||+||||||+||+.++.
T Consensus 86 ~~~LelvGvGypira~~~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~-t~I~i~GiDKq~Vgq~AA~Ir~~~~~ 159 (180)
T PRK05518 86 EYKLKIVYSHFPMQVKVQGNEVVIENFLGEKSPRRAKILGGVKVKVKG-EDVIVEGIDKEDVGQTAANIEQATKI 159 (180)
T ss_pred EEEEEEEecCccEEEEEcCCEEEEEeccccceeEEEeCCCCeEEEecC-CEEEEEeCCHHHHHHHHHHHHHhhcc
Confidence 99999999999 89999999999 8999999999999999999999 99999999999999999999999864
No 7
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=1.2e-48 Score=317.96 Aligned_cols=157 Identities=32% Similarity=0.559 Sum_probs=146.2
Q ss_pred CCeeeCCCcEEEEeCCEEEEEeCCeEEEEEc-CCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccceEE
Q 029116 26 QPIEVPSNVTITLGGQDLKVKGPLGELSLVY-PREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEK 104 (199)
Q Consensus 26 ~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~-~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~Gf~~ 104 (199)
.||.||++|+|+++++.|+|+||+|+|+++| ++.++++.+++.+.++.|+++++++|+|||+||||+|||+|||+||++
T Consensus 2 ~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf~~ 81 (170)
T TIGR03653 2 EEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYPGIEISVEDGKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTEGFEY 81 (170)
T ss_pred ceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCCcEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHHHhheeecccCeEE
Confidence 6899999999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeee--EEEEeCCeEEE--EcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCC---Cccc
Q 029116 105 KLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPP---EPYK 177 (199)
Q Consensus 105 ~L~lvGvGy--rv~~~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~p---e~Yk 177 (199)
+|+++|+|| ||.++++.|.+ +|||||++.++||+||+++++++ +|+|+|+|||+||||||+||+.++. |+++
T Consensus 82 ~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~-~I~i~G~DKq~Vgq~AA~Ir~~~~~~~~d~r~ 160 (170)
T TIGR03653 82 KMKVVYSHFPMQVKVEGNKVVIENFLGEKAPRRAKIPGGVKVKVKGE-EVIVTGIDKEDVGQTAANIEQATRIKGRDPRV 160 (170)
T ss_pred EEEEEeccccEEEEEcCCeEEEeeccccceeEEEECCCCeEEEecCC-EEEEEeCCHHHHHHHHHHHHHhhcccCCCccE
Confidence 999999999 89999999999 89999999999999999999985 9999999999999999999998764 4444
Q ss_pred -cCceee
Q 029116 178 -GKGVKY 183 (199)
Q Consensus 178 -gkGi~~ 183 (199)
=.||++
T Consensus 161 f~dgiy~ 167 (170)
T TIGR03653 161 FQDGIYI 167 (170)
T ss_pred eecCEEE
Confidence 335554
No 8
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=100.00 E-value=1.6e-47 Score=315.95 Aligned_cols=151 Identities=21% Similarity=0.332 Sum_probs=143.9
Q ss_pred cccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC---CeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccc
Q 029116 23 IGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR---EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 99 (199)
Q Consensus 23 igk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~---~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt 99 (199)
.-..||.||+||+|+++++.|+|+||+|+|+++|++ .+.++.+++.|.++.|+++++.+|+|||+||||+|||+|||
T Consensus 4 ~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~~~~~I~v~~~~~~kk~~al~Gt~rslI~NMI~GVt 83 (189)
T PTZ00179 4 KSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKNRTFTAVRWFGSKIPNSTINTALSHVRNMITGVT 83 (189)
T ss_pred cccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEecCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 346799999999999999999999999999999998 58888888999999999999999999999999999999999
Q ss_pred cceEEEEEEEeeee--EEEEeCCeEEE--EcceeeeEEEECCCCeEEEEccC----CeEEEEeccHHHHHHHHHHhhccC
Q 029116 100 KGFEKKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN----TRITVSGYDKSAIGQFAASIRKWR 171 (199)
Q Consensus 100 ~Gf~~~L~lvGvGy--rv~~~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~----t~Iil~GiDke~Vgq~AA~Ir~~r 171 (199)
+||+++|+++|+|| ||.++|+.|.+ +||||||+.++||+||++++++| |+|+|+|+|||+||||||+|++.+
T Consensus 84 ~GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~Vgq~AA~i~~~~ 163 (189)
T PTZ00179 84 KGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSREAAVMHQLC 163 (189)
T ss_pred CCEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHHHHHHHHHHHHhh
Confidence 99999999999999 99999999999 89999999999999999999988 899999999999999999999988
Q ss_pred CC
Q 029116 172 PP 173 (199)
Q Consensus 172 ~p 173 (199)
..
T Consensus 164 ~~ 165 (189)
T PTZ00179 164 LV 165 (189)
T ss_pred cc
Confidence 43
No 9
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=100.00 E-value=2.3e-47 Score=315.32 Aligned_cols=150 Identities=23% Similarity=0.374 Sum_probs=141.2
Q ss_pred cCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC---CeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccc
Q 029116 25 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR---EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKG 101 (199)
Q Consensus 25 k~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~---~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~G 101 (199)
..||.||+||+|+++++.|+|+||+|+|+++|++ .+.++.+++.|.++.|+++++.+|+|||+||||+||++|||+|
T Consensus 7 ~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~~~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~GVt~G 86 (190)
T PTZ00027 7 SEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKK 86 (190)
T ss_pred CCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 5699999999999999999999999999999997 5777778999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeeeEEE--E--eCCeEEE--EcceeeeEEEECCCCeEEEEccC--CeEEEEeccHHHHHHHHHHhhccCCC
Q 029116 102 FEKKLQMVGVGYRAA--L--EGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWRPP 173 (199)
Q Consensus 102 f~~~L~lvGvGyrv~--~--~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~--t~Iil~GiDke~Vgq~AA~Ir~~r~p 173 (199)
|+++|+++|+||||. + +|+.|.| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||+||+.++.
T Consensus 87 f~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~AA~I~~~~~~ 166 (190)
T PTZ00027 87 FQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLV 166 (190)
T ss_pred EEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999 6 6788999 89999999999999999999975 89999999999999999999998854
Q ss_pred C
Q 029116 174 E 174 (199)
Q Consensus 174 e 174 (199)
.
T Consensus 167 ~ 167 (190)
T PTZ00027 167 R 167 (190)
T ss_pred c
Confidence 3
No 10
>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=6.6e-20 Score=149.84 Aligned_cols=151 Identities=25% Similarity=0.311 Sum_probs=128.4
Q ss_pred cccc-ccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEEeCC---EEEEEeccchhhhhhHHHHHHHHHhhc
Q 029116 20 ESRI-GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDS---FLRVRKTVETRRANQMHGLFRTLTDNM 94 (199)
Q Consensus 20 ~Sri-gk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~i~i~~~~~---~i~i~~~~~~k~~~a~~gT~~sli~Nm 94 (199)
|+.| .+..+.||++|++++++..++|+||.|+|+++|.| .+.+...++ .+.+..|+..|+..|..-|..++++||
T Consensus 1 mk~Ilsn~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~~~~~ik~~~~~~~Rk~va~l~t~~s~ien~ 80 (179)
T KOG3255|consen 1 MKTILSNQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGKKKKRLKIDKWWGTRKGVACLRTVVSHIENC 80 (179)
T ss_pred CceEEeceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcchhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 3444 56789999999999999999999999999999995 444444343 488899999999999999999999999
Q ss_pred ccccccceEEEEEEEeeeeEE--EEeCC----eEEEEcceeeeEEEECCCCeEEEEcc--CCeEEEEeccHHHHHHHHHH
Q 029116 95 VVGVSKGFEKKLQMVGVGYRA--ALEGQ----VLVLSLGFSHPVRMTIPDGIKVNVEE--NTRITVSGYDKSAIGQFAAS 166 (199)
Q Consensus 95 i~GVt~Gf~~~L~lvGvGyrv--~~~~~----~L~l~LG~Sh~i~~~IP~~Vkv~~~~--~t~Iil~GiDke~Vgq~AA~ 166 (199)
++||+.||.|+|..++.||.+ ...++ .+..+||++.+..++..+|+...... +++++++|.|.+.|+|.||.
T Consensus 81 i~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~~~~~~vs~~~a~ 160 (179)
T KOG3255|consen 81 IKGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEGNDLELVSQSAAL 160 (179)
T ss_pred HhcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecccchhhhhhHhHh
Confidence 999999999999999999964 34444 24568999999999999999887643 78999999999999998887
Q ss_pred hhccC
Q 029116 167 IRKWR 171 (199)
Q Consensus 167 Ir~~r 171 (199)
++.+
T Consensus 161 -~~~~ 164 (179)
T KOG3255|consen 161 -QQIC 164 (179)
T ss_pred -hccc
Confidence 4433
No 11
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=99.76 E-value=2.4e-18 Score=121.94 Aligned_cols=72 Identities=39% Similarity=0.657 Sum_probs=68.5
Q ss_pred eCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEE--EeCCEEEEEeccchhhhhh---HHHHHHHHHhhcccccccc
Q 029116 30 VPSNVTITLGGQDLKVKGPLGELSLVYPREVKVD--REDSFLRVRKTVETRRANQ---MHGLFRTLTDNMVVGVSKG 101 (199)
Q Consensus 30 IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~--~~~~~i~i~~~~~~k~~~a---~~gT~~sli~Nmi~GVt~G 101 (199)
||+||+|+++++.++|+||+|+++++|++.+.++ .+++.+.+..+.+++++++ +|||+|||++||++||++|
T Consensus 1 IP~gV~v~~~~~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~~G 77 (77)
T PF00347_consen 1 IPEGVKVTIKGNIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVTEG 77 (77)
T ss_dssp SSTTCEEEEETTEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred CCCcEEEEEeCcEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhhhHHhhccccccccCceeEECCC
Confidence 7999999999999999999999999999998888 6699999999999999998 9999999999999999987
No 12
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.58 E-value=1.2e-08 Score=71.90 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=62.4
Q ss_pred eeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEc--c--CCeEEEEeccHHHHHHHHHHhhccCCCCccccCceee
Q 029116 110 GVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVE--E--NTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKY 183 (199)
Q Consensus 110 GvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~--~--~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~YkgkGi~~ 183 (199)
+.|++|.+++ .+....|++|...+++|++|.+++. + .+...+.+.|++.. +||.++.+|.+.+|.++|+.+
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~~ 76 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVTE 76 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeC-cEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEECC
Confidence 5688999999 8888899999999999999999965 3 34557899999999 999999999999999999854
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=74.02 E-value=9.6 Score=27.16 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCCcEEEEeCCEEEEEeCC--------eEEEEEcC--CC-----eEEEE-eCCEEEEE
Q 029116 31 PSNVTITLGGQDLKVKGPL--------GELSLVYP--RE-----VKVDR-EDSFLRVR 72 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~--------G~l~~~~~--~~-----i~i~~-~~~~i~i~ 72 (199)
|++++|++.++.|+|+|-. |+.++.|. .. +.-.+ +++.|.|.
T Consensus 21 pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~ 78 (81)
T cd06479 21 PEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIK 78 (81)
T ss_pred HHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEE
Confidence 5789999999999999854 67766654 22 44454 67777665
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=64.94 E-value=13 Score=26.59 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=16.8
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 029116 31 PSNVTITLGGQDLKVKGPL 49 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~ 49 (199)
|++++|++.++.|+|+|-.
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 20 PEDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 6899999999999999864
No 15
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=64.46 E-value=27 Score=22.54 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCEEEEEeCCe------------EEEEEcCCC-----eEEEEeCCEEEEE
Q 029116 31 PSNVTITLGGQDLKVKGPLG------------ELSLVYPRE-----VKVDREDSFLRVR 72 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G------------~l~~~~~~~-----i~i~~~~~~i~i~ 72 (199)
|+++.|.++++.+.|+|... .+...|++. +...+.++.|.+.
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~ 77 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEIT 77 (80)
T ss_pred HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEE
Confidence 57899999999999998764 334445543 3444556666654
No 16
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=61.79 E-value=20 Score=23.83 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=23.2
Q ss_pred CCeEEEEccCCeEEEEeccHHHHHHHHHHh
Q 029116 138 DGIKVNVEENTRITVSGYDKSAIGQFAASI 167 (199)
Q Consensus 138 ~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~I 167 (199)
.|+++.+++...+.++|.|.+.|....+.|
T Consensus 31 tg~~I~i~~~g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 31 TGVKIDIEDDGTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred HCCEEEeCCCCEEEEEeCCHHHHHHHHHHh
Confidence 356666666678999999999988776665
No 17
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=61.02 E-value=21 Score=25.45 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.8
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 029116 31 PSNVTITLGGQDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp 48 (199)
|++++|.++++.++|+|.
T Consensus 24 kedi~v~~~~~~L~I~g~ 41 (90)
T cd06470 24 EDDLEIEVENNQLTVTGK 41 (90)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 468899999999999985
No 18
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=60.64 E-value=32 Score=24.59 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCCcEEEEeCCEEEEEeCCe------------------EEEEEcCC-----CeEEEEeCCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKGPLG------------------ELSLVYPR-----EVKVDREDSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G------------------~l~~~~~~-----~i~i~~~~~~i~i~~~~ 75 (199)
|++++|++.++.|+++|-.. .-++.||. .++..++++.|.|....
T Consensus 20 ~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk 87 (102)
T PF00011_consen 20 KEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGVLTITIPK 87 (102)
T ss_dssp GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEEB
T ss_pred hHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCEEEEEEEc
Confidence 46899999999999999877 22344553 25666788888887553
No 19
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=55.93 E-value=40 Score=23.81 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCcEEEEeCCEEEEEeCC
Q 029116 32 SNVTITLGGQDLKVKGPL 49 (199)
Q Consensus 32 ~~V~v~i~~~~v~vkGp~ 49 (199)
++++|++.++.++|+|-.
T Consensus 24 edi~v~~~~~~L~I~g~~ 41 (93)
T cd06471 24 EDIKLDYKDGYLTISAKR 41 (93)
T ss_pred HHeEEEEECCEEEEEEEE
Confidence 788999999999998844
No 20
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=55.68 E-value=12 Score=30.99 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=37.7
Q ss_pred eCCEEEEEeCCe---EEEEEcCCCeEEEEeC---CEEEEEeccchhhhhhHHHHHHHHHhhccc
Q 029116 39 GGQDLKVKGPLG---ELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMVV 96 (199)
Q Consensus 39 ~~~~v~vkGp~G---~l~~~~~~~i~i~~~~---~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~ 96 (199)
+++.|.++.-+| ....++|..+.++..+ +.|.++-.+ +...|.++|.|++...
T Consensus 107 ~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~D-----Kq~Vgq~AA~I~~~~~ 165 (190)
T PTZ00027 107 NGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGAD-----LELVSRSAALIHQSTL 165 (190)
T ss_pred CCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCC-----HHHHHHHHHHHHHHhc
Confidence 777888864444 5667888888888764 467666443 4668889999998654
No 21
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=55.54 E-value=12 Score=30.57 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=36.6
Q ss_pred cEEEEeCCEEE-EEeCCeEEEEEcCCCeEEEEeCC-EEEEEeccchhhhhhHHHHHHHHHhh
Q 029116 34 VTITLGGQDLK-VKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 93 (199)
Q Consensus 34 V~v~i~~~~v~-vkGp~G~l~~~~~~~i~i~~~~~-~i~i~~~~~~k~~~a~~gT~~sli~N 93 (199)
..+.++++.|. .=|=.-.....+|..+.++..+. .|.++-.+ +...|.++|.|++
T Consensus 94 yr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~d-----ke~Vgq~AA~Ir~ 150 (178)
T CHL00140 94 YRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGID-----KELVGQFAAKIRS 150 (178)
T ss_pred EEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECC-----HHHHHHHHHHHhc
Confidence 45566665444 45777788888888888877665 56665443 3457777777765
No 22
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=54.11 E-value=70 Score=24.65 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=27.4
Q ss_pred CCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEec
Q 029116 26 QPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKT 74 (199)
Q Consensus 26 ~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~ 74 (199)
..|.+|+|-++.--...-.++-|-|+++..+ ..+++.+.|...
T Consensus 41 yti~~pegm~l~t~~~~K~I~N~~Gk~~isv------~~~~~~~~V~rs 83 (116)
T PF12970_consen 41 YTIELPEGMKLVTPPMEKKIDNPVGKVSISV------KPEGNKIKVTRS 83 (116)
T ss_dssp EEEEE-TT-EE-S--S-EEEEETTEEEEEEE------EEETTEEEEEEE
T ss_pred EEEEcCCCCeeecCccceeccCCcceEEEEE------EecCCeEEEEEE
Confidence 4568888888777777788999999987655 566777766544
No 23
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=50.34 E-value=17 Score=30.04 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=16.3
Q ss_pred eeeCCCcEEEEeC-CEEEEEeCCeE
Q 029116 28 IEVPSNVTITLGG-QDLKVKGPLGE 51 (199)
Q Consensus 28 I~IP~~V~v~i~~-~~v~vkGp~G~ 51 (199)
++||+||+|++.+ ..|+++|+.=+
T Consensus 115 ~~ip~gi~v~v~~~t~I~v~GidKe 139 (178)
T COG0097 115 IEIPEGITVEVPGPTEIVVEGIDKE 139 (178)
T ss_pred EECCCCeEEEecCCCEEEEEcCCHH
Confidence 3777777777766 55777776543
No 24
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=50.08 E-value=17 Score=29.63 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=35.4
Q ss_pred EEEEeCCEEE-EEeCCeEEEEEcCCCeEEEEeCC-EEEEEeccchhhhhhHHHHHHHHHhh
Q 029116 35 TITLGGQDLK-VKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 93 (199)
Q Consensus 35 ~v~i~~~~v~-vkGp~G~l~~~~~~~i~i~~~~~-~i~i~~~~~~k~~~a~~gT~~sli~N 93 (199)
.+.++++.|. .=|=.-....++|..+.+...++ .|.++-.+ +...|.++|.|+.
T Consensus 94 rv~~~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~d-----ke~Vgq~AA~Ir~ 149 (175)
T TIGR03654 94 RAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGID-----KQLVGQVAAEIRA 149 (175)
T ss_pred EEEEeCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECC-----HHHHHHHHHHHhc
Confidence 5555665544 44777788888888888877665 56665443 3456677777765
No 25
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=48.32 E-value=1.5e+02 Score=24.11 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=37.4
Q ss_pred EEEEeCCEEEEEeCCe---EEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhccc
Q 029116 35 TITLGGQDLKVKGPLG---ELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVV 96 (199)
Q Consensus 35 ~v~i~~~~v~vkGp~G---~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~ 96 (199)
.+.++++.+.++.-+| ....++|..+.++..++.|.++-.+ +...|.++|.|++...
T Consensus 93 ra~~~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~~I~i~G~D-----Kq~Vgq~AA~Ir~~~~ 152 (170)
T TIGR03653 93 QVKVEGNKVVIENFLGEKAPRRAKIPGGVKVKVKGEEVIVTGID-----KEDVGQTAANIEQATR 152 (170)
T ss_pred EEEEcCCeEEEeeccccceeEEEECCCCeEEEecCCEEEEEeCC-----HHHHHHHHHHHHHhhc
Confidence 4445666677744444 4556677778887766666665443 4668888999988654
No 26
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=46.04 E-value=90 Score=20.94 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCEEEEEeCCeEEEEEcCCCe-----EEEEeCCEEEEEec
Q 029116 31 PSNVTITLGGQDLKVKGPLGELSLVYPREV-----KVDREDSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G~l~~~~~~~i-----~i~~~~~~i~i~~~ 74 (199)
|++++|+++++.+.+.++.=.+..+|++.+ ...+.++.+.+...
T Consensus 19 ~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~ 67 (78)
T cd06469 19 TSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLV 67 (78)
T ss_pred cccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeCCEEEEEEE
Confidence 678899999999999985545566676543 34456777777644
No 27
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=45.62 E-value=22 Score=29.05 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=36.0
Q ss_pred EEEEeCCEEE-EEeCCeEEEEEcCCCeEEEEeCC-EEEEEeccchhhhhhHHHHHHHHHhh
Q 029116 35 TITLGGQDLK-VKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 93 (199)
Q Consensus 35 ~v~i~~~~v~-vkGp~G~l~~~~~~~i~i~~~~~-~i~i~~~~~~k~~~a~~gT~~sli~N 93 (199)
.+.++++.|. .=|=.-.....+|..+.+...++ .|.++-.+ +...+.++|.|++
T Consensus 95 rv~~~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~d-----ke~Vg~~AA~Ir~ 150 (178)
T PRK05498 95 RAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGID-----KQLVGQVAAEIRS 150 (178)
T ss_pred EEEEeCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECC-----HHHHHHHHHHHhc
Confidence 5555665544 45777788888888888887665 57666443 3456777777766
No 28
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=43.74 E-value=98 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.446 Sum_probs=14.7
Q ss_pred CCCcEEEEeC-CEEEEEeC
Q 029116 31 PSNVTITLGG-QDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~-~~v~vkGp 48 (199)
|++++|.+.+ +.++|+|-
T Consensus 22 ~edi~i~v~~~~~L~I~g~ 40 (92)
T cd06472 22 KEDVKVEVEDGRVLRISGE 40 (92)
T ss_pred hHhEEEEEeCCCEEEEEEE
Confidence 4889999986 58999985
No 29
>PRK14420 acylphosphatase; Provisional
Probab=43.72 E-value=3.8 Score=29.67 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.2
Q ss_pred CeEEEEeccHHHHHHHHHHhhccCCC
Q 029116 148 TRITVSGYDKSAIGQFAASIRKWRPP 173 (199)
Q Consensus 148 t~Iil~GiDke~Vgq~AA~Ir~~r~p 173 (199)
-+|.++|.+ +.|.+|...|++- ||
T Consensus 42 Vei~~qG~~-~~i~~f~~~l~~~-p~ 65 (91)
T PRK14420 42 VEIEAEGPE-EALQLFLDAIEKG-SP 65 (91)
T ss_pred EEEEEEECH-HHHHHHHHHHHhC-CC
Confidence 378889965 8899999999975 44
No 30
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=43.23 E-value=16 Score=32.26 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=26.5
Q ss_pred cceeeeEEEECCCCeEEEEccCCeEEEEeccH
Q 029116 126 LGFSHPVRMTIPDGIKVNVEENTRITVSGYDK 157 (199)
Q Consensus 126 LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDk 157 (199)
=.|||.+.-.+|.+..| ++.++.++++|++.
T Consensus 167 Pvysh~~yD~vpd~~~v-~~~pdIlI~EG~nv 197 (283)
T COG1072 167 PVYSHLIYDPVPDAFQV-VPQPDILIVEGNNV 197 (283)
T ss_pred ccccccccccCCCceee-cCCCCEEEEechhh
Confidence 46999999999998887 56678999999974
No 31
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=42.59 E-value=17 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.0
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 029116 31 PSNVTITLGGQDLKVKGPL 49 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~ 49 (199)
|++++|++.++.++|+|-.
T Consensus 20 ~edI~V~v~~~~L~I~ge~ 38 (83)
T cd06477 20 PEDIIIQVFEGWLLIKGQH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5677788888888887753
No 32
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=41.15 E-value=1e+02 Score=20.66 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=16.4
Q ss_pred CCCcEEEEeCCEEEEEeCCe
Q 029116 31 PSNVTITLGGQDLKVKGPLG 50 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G 50 (199)
|++++|++.++.|.|+|..-
T Consensus 20 ~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 20 KEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 37889999999999997653
No 33
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=41.13 E-value=18 Score=26.42 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCCcEEEEeCCEEEEEeCCe
Q 029116 31 PSNVTITLGGQDLKVKGPLG 50 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G 50 (199)
|+.++|++.++.|+|+|...
T Consensus 28 pEDL~Vkv~~~~L~V~Gkh~ 47 (91)
T cd06480 28 PEELTVKTKDGFVEVSGKHE 47 (91)
T ss_pred HHHcEEEEECCEEEEEEEEC
Confidence 77888888888888887643
No 34
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=40.75 E-value=78 Score=24.57 Aligned_cols=45 Identities=24% Similarity=0.535 Sum_probs=31.3
Q ss_pred CCCcEEEEeCCEEEEEeCC------------------eEEEEEc--CCC-----eEEEEeCCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKGPL------------------GELSLVY--PRE-----VKVDREDSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~------------------G~l~~~~--~~~-----i~i~~~~~~i~i~~~~ 75 (199)
|++++|++.++.|+|+|-. |...+.| |.+ +...++++-|.|....
T Consensus 63 kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk 132 (146)
T COG0071 63 KEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPK 132 (146)
T ss_pred hHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeCcEEEEEEec
Confidence 4789999999999999877 4454544 332 4445678888886543
No 35
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=39.71 E-value=20 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=15.0
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 029116 31 PSNVTITLGGQDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp 48 (199)
|++++|++.++.++|+|-
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 20 PEELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 678888888889988884
No 36
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=39.70 E-value=24 Score=24.95 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=14.2
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 029116 31 PSNVTITLGGQDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp 48 (199)
|++++|++.++.++|+|.
T Consensus 20 ~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 20 PEELSVKVLGDFVEIHGK 37 (83)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 567888888888888873
No 37
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=38.75 E-value=21 Score=25.39 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=14.2
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 029116 31 PSNVTITLGGQDLKVKGPL 49 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~ 49 (199)
|++++|++.++.++|+|-.
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 20 PDEITVRTVDNLLEVSARH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5677888888888887753
No 38
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=37.11 E-value=23 Score=25.26 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 029116 31 PSNVTITLGGQDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp 48 (199)
|++++|++.++.++|+|-
T Consensus 23 ~edi~V~v~~~~L~I~g~ 40 (86)
T cd06497 23 PEDLTVKVLDDYVEIHGK 40 (86)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 567888888888888875
No 39
>PF11280 DUF3081: Protein of unknown function (DUF3081); InterPro: IPR021432 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.77 E-value=32 Score=24.69 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=27.2
Q ss_pred ccccceEEEEEEEee-----eeEEEEeCCeEEEEcceeeeEEEEC
Q 029116 97 GVSKGFEKKLQMVGV-----GYRAALEGQVLVLSLGFSHPVRMTI 136 (199)
Q Consensus 97 GVt~Gf~~~L~lvGv-----Gyrv~~~~~~L~l~LG~Sh~i~~~I 136 (199)
|-.....+.|.=+.+ ||.+.+.++.+.+.|||=..-.++-
T Consensus 18 Ge~~~~~y~l~GI~A~~D~DGYtv~L~~~~VtLtl~FHnty~~dy 62 (79)
T PF11280_consen 18 GEKTEGGYELEGITAFSDFDGYTVYLEDNGVTLTLGFHNTYHLDY 62 (79)
T ss_pred CccCCCcEEEccEEEEecCCCcEEEEeCCCEEEEEEeccceecCC
Confidence 444445555554433 7899999999999999966544443
No 40
>PRK14434 acylphosphatase; Provisional
Probab=34.90 E-value=9.4 Score=27.88 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.7
Q ss_pred CeEEEEeccHHHHHHHHHHhhccCC
Q 029116 148 TRITVSGYDKSAIGQFAASIRKWRP 172 (199)
Q Consensus 148 t~Iil~GiDke~Vgq~AA~Ir~~r~ 172 (199)
-+|.++|.+.+.|.+|.+.|++-.|
T Consensus 43 Vei~~qG~~~~~l~~f~~~l~~g~p 67 (92)
T PRK14434 43 VEILAQSDDSAKLAKFIQEIRKGPS 67 (92)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCC
Confidence 3678888777789999999987443
No 41
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=33.59 E-value=50 Score=25.09 Aligned_cols=29 Identities=34% Similarity=0.839 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHhhc---------cCCCCccccCceee
Q 029116 155 YDKSAIGQFAASIRK---------WRPPEPYKGKGVKY 183 (199)
Q Consensus 155 iDke~Vgq~AA~Ir~---------~r~pe~YkgkGi~~ 183 (199)
.+.+.|..||+.+.. +-|.+|.||-|-|-
T Consensus 22 l~~~~v~~F~~~L~~~L~~~y~~HWyP~~P~kGqayRC 59 (108)
T smart00099 22 LSKRRVEIFAEKLTRLLKEKYKNHWYPEKPYKGSGFRC 59 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcceEE
Confidence 678999999998875 88999999999653
No 42
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=33.37 E-value=29 Score=24.18 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=15.2
Q ss_pred CCCcEEEEeCCEEEEEeCC
Q 029116 31 PSNVTITLGGQDLKVKGPL 49 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~ 49 (199)
|++++|.+.++.|+|+|..
T Consensus 20 ~edI~v~v~~~~L~I~g~~ 38 (83)
T cd06526 20 PEELKVKVSDNKLVVEGKH 38 (83)
T ss_pred HHHcEEEEECCEEEEEEEE
Confidence 4678888888888888864
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=33.28 E-value=29 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=12.3
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 029116 31 PSNVTITLGGQDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp 48 (199)
|++|+|++.++.|+|+|-
T Consensus 21 kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 356677777777777764
No 44
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=32.88 E-value=86 Score=23.77 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=30.2
Q ss_pred EEEECCCCeEEEE---ccCCeEEEEeccHHHHHHHHHHhhc
Q 029116 132 VRMTIPDGIKVNV---EENTRITVSGYDKSAIGQFAASIRK 169 (199)
Q Consensus 132 i~~~IP~~Vkv~~---~~~t~Iil~GiDke~Vgq~AA~Ir~ 169 (199)
..+++|+....++ .++++++++-.|-|.+.+--|.||.
T Consensus 66 t~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 66 TRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred ccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3467777655544 5578999999999999999999984
No 45
>PRK14446 acylphosphatase; Provisional
Probab=31.56 E-value=17 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.5
Q ss_pred eEEEEeccHHHHHHHHHHhh
Q 029116 149 RITVSGYDKSAIGQFAASIR 168 (199)
Q Consensus 149 ~Iil~GiDke~Vgq~AA~Ir 168 (199)
+|.++| |.+.+.+|.+.++
T Consensus 43 ei~~qG-~~~~l~~f~~~l~ 61 (88)
T PRK14446 43 EVVAAG-SAAALEALEAWLW 61 (88)
T ss_pred EEEEEe-CHHHHHHHHHHHh
Confidence 677788 5578999999998
No 46
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=31.26 E-value=3e+02 Score=22.71 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.7
Q ss_pred EEEEeCCEEEEEeCCe---EEEEEcCCCeEEEEeC-----CEEEEEeccchhhhhhHHHHHHHHHhhccc
Q 029116 35 TITLGGQDLKVKGPLG---ELSLVYPREVKVDRED-----SFLRVRKTVETRRANQMHGLFRTLTDNMVV 96 (199)
Q Consensus 35 ~v~i~~~~v~vkGp~G---~l~~~~~~~i~i~~~~-----~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~ 96 (199)
++.++++.|.++.-+| ....++|..+.++..+ +.|.++-.+ +...|.++|.|++...
T Consensus 100 ra~v~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~D-----Kq~Vgq~AA~i~~~~~ 164 (189)
T PTZ00179 100 SVSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGND-----LEQVSREAAVMHQLCL 164 (189)
T ss_pred EEEEcCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCC-----HHHHHHHHHHHHHhhc
Confidence 5566778888864444 4566777778887754 356665443 4668899999998654
No 47
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.45 E-value=63 Score=21.38 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.7
Q ss_pred eEEEEeccHHHHHHHHHHhhccCCCCcccc
Q 029116 149 RITVSGYDKSAIGQFAASIRKWRPPEPYKG 178 (199)
Q Consensus 149 ~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykg 178 (199)
-+++.|.+-+.+.++-..+|+..-|.|||.
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~kA 32 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPLKA 32 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcceEE
Confidence 468999999999999999999988888874
No 48
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=30.30 E-value=38 Score=24.16 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=12.9
Q ss_pred CCCcEEEEeCCEEEEEeC
Q 029116 31 PSNVTITLGGQDLKVKGP 48 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp 48 (199)
|++++|++.++.++|+|-
T Consensus 23 ~edi~V~v~~~~L~I~g~ 40 (86)
T cd06475 23 PEELVVKTKDGVVEITGK 40 (86)
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 456777777777777774
No 49
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=28.79 E-value=3.3e+02 Score=22.34 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=44.2
Q ss_pred EEEEeCCEEEEEeCCe---EEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccceEEEEEEEee
Q 029116 35 TITLGGQDLKVKGPLG---ELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGV 111 (199)
Q Consensus 35 ~v~i~~~~v~vkGp~G---~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~Gf~~~L~lvGv 111 (199)
++.++++.+.++.-+| .....+|..+.++..+..|.++-.+ +...|.++|.|+|...-=....+.-|.=+|+
T Consensus 99 ra~~~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~t~I~i~GiD-----Kq~Vgq~AA~Ir~~~~~~~kd~r~f~dgiyv 173 (180)
T PRK05518 99 QVKVQGNEVVIENFLGEKSPRRAKILGGVKVKVKGEDVIVEGID-----KEDVGQTAANIEQATKIKGFDRRVFQDGIYI 173 (180)
T ss_pred EEEEcCCEEEEEeccccceeEEEeCCCCeEEEecCCEEEEEeCC-----HHHHHHHHHHHHHhhcccCCCCCEeecCEEE
Confidence 3445566666654444 4455666677777666456665443 4568899999999766555555554444443
No 50
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=28.72 E-value=1.4e+02 Score=19.04 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=19.0
Q ss_pred CeEEEEcc---CCeEEEEeccHHHHHHHHHHh
Q 029116 139 GIKVNVEE---NTRITVSGYDKSAIGQFAASI 167 (199)
Q Consensus 139 ~Vkv~~~~---~t~Iil~GiDke~Vgq~AA~I 167 (199)
|+.+.+++ ...+.|+| +.+.|.+..+.|
T Consensus 30 ~~~I~i~~~~~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 30 GVKIQIPDDDERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp TSEEEEESTTEEEEEEEEE-SHHHHHHHHHHH
T ss_pred CeEEEEcCCCCcEEEEEEe-CHHHHHHHHhhC
Confidence 34444443 35789999 999888776654
No 51
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=26.81 E-value=2e+02 Score=23.86 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=56.4
Q ss_pred CeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccc---cccceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEE
Q 029116 59 EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVG---VSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMT 135 (199)
Q Consensus 59 ~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~G---Vt~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~ 135 (199)
++.++..+|.+.|....+.+..+..|..+++++.. +.+ -.-.|+|.+..+ ++-.- .+
T Consensus 26 ~~~v~~k~n~l~I~i~G~~~eike~~~~Ik~~~~~-vr~k~~~~g~~~y~l~~i------------------~r~a~-~~ 85 (190)
T PF09840_consen 26 YIYVEVKGNSLKIEIQGYEKEIKEAIRRIKELVRR-VRSKYNKRGLYRYSLDDI------------------FREAG-YP 85 (190)
T ss_pred EEEEEEeCCEEEEEEecChHHHHHHHHHHHHHHHH-HHHHhccCCceEEcHHHH------------------HHHcC-CC
Confidence 56677788999998887666666666666664433 222 333444444433 11111 56
Q ss_pred CCC----------CeEEEEccCCeEEEEeccHHHHHHHHHHhhc
Q 029116 136 IPD----------GIKVNVEENTRITVSGYDKSAIGQFAASIRK 169 (199)
Q Consensus 136 IP~----------~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~ 169 (199)
+|+ |.++...+. .+.+.++.+.|-++|-.|..
T Consensus 86 vp~d~L~~~L~~~G~~ae~~~~--~i~T~a~~eev~~l~~~Lse 127 (190)
T PF09840_consen 86 VPPDLLVDALKLLGYKAEYRED--VIKTDAPLEEVVELAERLSE 127 (190)
T ss_pred CCHHHHHHHHHhCCCeeEEeCC--eEEecCCHHHHHHHHHHHHH
Confidence 664 667777765 67799999999999977653
No 52
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=26.55 E-value=96 Score=21.85 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=8.7
Q ss_pred CeEEEEcceeeeE
Q 029116 120 QVLVLSLGFSHPV 132 (199)
Q Consensus 120 ~~L~l~LG~Sh~i 132 (199)
+...++||++|..
T Consensus 57 dEFeI~LgrKhI~ 69 (71)
T PF14250_consen 57 DEFEIKLGRKHIH 69 (71)
T ss_pred CEEEEEeCcceEE
Confidence 3456778888854
No 53
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=25.80 E-value=2.8e+02 Score=20.48 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=35.0
Q ss_pred cCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEE
Q 029116 25 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVR 72 (199)
Q Consensus 25 k~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~ 72 (199)
+..++|-+||-++.+++.+++.+-..++.....-......+++.+.+.
T Consensus 24 k~~~piL~~ili~a~~~~l~l~atD~e~~i~~~i~~~~~~~~G~~~v~ 71 (120)
T PF00712_consen 24 KSTIPILSNILIEAKDNKLTLTATDLEISIRTTIPAEIEEEEGSILVP 71 (120)
T ss_dssp SSSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEETEEEEE-EEEEEE
T ss_pred CCChHHhccEEEEEeCCEEEEEEEcCeEEEEEEEeceeecCCeEEEEE
Confidence 455677799999999999999999998887765334444567777764
No 54
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=24.70 E-value=1.5e+02 Score=19.03 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=14.5
Q ss_pred CCeEEEEeccHHHHHHHHHHh
Q 029116 147 NTRITVSGYDKSAIGQFAASI 167 (199)
Q Consensus 147 ~t~Iil~GiDke~Vgq~AA~I 167 (199)
.+.+.|.|. .+.|....+.|
T Consensus 42 ~~~v~I~G~-~~~v~~A~~~i 61 (62)
T cd02394 42 SDTITITGP-KENVEKAKEEI 61 (62)
T ss_pred CCEEEEEcC-HHHHHHHHHHh
Confidence 568999999 56776655554
No 55
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=22.04 E-value=2.4e+02 Score=18.42 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=29.5
Q ss_pred CCCcEEEEeCCEEEEEeCC---e--EEEEEcCCC-----eEEEEeCCEEEEEec
Q 029116 31 PSNVTITLGGQDLKVKGPL---G--ELSLVYPRE-----VKVDREDSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~---G--~l~~~~~~~-----i~i~~~~~~i~i~~~ 74 (199)
++++.|.++++.++++... + .+..+|.+. ....+.++.+.|...
T Consensus 19 ~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~ 72 (84)
T cd06463 19 KKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLK 72 (84)
T ss_pred ccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEE
Confidence 6788999999988888754 2 455555543 344556777777544
No 56
>PRK10743 heat shock protein IbpA; Provisional
Probab=21.09 E-value=63 Score=25.27 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=11.9
Q ss_pred CCcEEEEeCCEEEEEeC
Q 029116 32 SNVTITLGGQDLKVKGP 48 (199)
Q Consensus 32 ~~V~v~i~~~~v~vkGp 48 (199)
++|+|+++++.++++|-
T Consensus 59 edi~V~v~~~~LtI~ge 75 (137)
T PRK10743 59 SELEITAQDNLLVVKGA 75 (137)
T ss_pred HHeEEEEECCEEEEEEE
Confidence 45677777777777774
No 57
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=20.81 E-value=64 Score=25.49 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=13.1
Q ss_pred CCcEEEEeCCEEEEEeC
Q 029116 32 SNVTITLGGQDLKVKGP 48 (199)
Q Consensus 32 ~~V~v~i~~~~v~vkGp 48 (199)
++|+|+++++.++++|-
T Consensus 57 edi~V~v~~~~LtI~ge 73 (142)
T PRK11597 57 EDLDIQLEGTRLTVKGT 73 (142)
T ss_pred HHeEEEEECCEEEEEEE
Confidence 56778888888888874
No 58
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=20.74 E-value=42 Score=22.48 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=10.3
Q ss_pred eEEEEeccHHHHHHHHH
Q 029116 149 RITVSGYDKSAIGQFAA 165 (199)
Q Consensus 149 ~Iil~GiDke~Vgq~AA 165 (199)
+.-+.|+|++.|.||.+
T Consensus 2 e~~~~Gi~~~lVd~F~~ 18 (55)
T PF09288_consen 2 EAALYGIDKDLVDQFEN 18 (55)
T ss_dssp -SS----SHHHHHHHHH
T ss_pred hHHHcCCCHHHHHHHHH
Confidence 34578999999999986
No 59
>PF01330 RuvA_N: RuvA N terminal domain; InterPro: IPR013849 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. This entry represents domain I of RuvA, which has an OB-fold structure. This domain forms the RuvA tetramer contacts [].; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJP_A 1D8L_B 1CUK_A 1C7Y_A 1IXR_B 2ZTC_A 2ZTD_B 2H5X_A 2ZTE_A 1BVS_E ....
Probab=20.34 E-value=86 Score=20.67 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=11.3
Q ss_pred EEEEEEEeeeeEEEEe
Q 029116 103 EKKLQMVGVGYRAALE 118 (199)
Q Consensus 103 ~~~L~lvGvGyrv~~~ 118 (199)
..-++..|+||.+.+.
T Consensus 16 ~vvi~~~GvGy~v~v~ 31 (61)
T PF01330_consen 16 YVVIDVNGVGYEVFVP 31 (61)
T ss_dssp EEEEEETTEEEEEEE-
T ss_pred EEEEEECCEEEEEEeC
Confidence 3567778888888774
No 60
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A.
Probab=20.02 E-value=59 Score=25.45 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=17.9
Q ss_pred ccccccccCCeeeCCCcEEEEeCCEEE--EEeCCe
Q 029116 18 CKESRIGKQPIEVPSNVTITLGGQDLK--VKGPLG 50 (199)
Q Consensus 18 ~~~Srigk~~I~IP~~V~v~i~~~~v~--vkGp~G 50 (199)
|.+...+.++|+.|..++|.+++..+. +.||++
T Consensus 67 ~~~~~~~~q~i~FP~~~evkvN~~~v~~~~~glkn 101 (144)
T PF14324_consen 67 CLSESSGNQPIEFPPPCEVKVNGKQVKLNNRGLKN 101 (144)
T ss_dssp S-SS-GGGB-----SSEEEEETTEE--S--SS-TT
T ss_pred ccCCCCCccccccCCCeEEEEeCEEcccCccCCCC
Confidence 446778999999999999999998776 455543
Done!