Query 029116
Match_columns 199
No_of_seqs 139 out of 1055
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkw_E 50S ribosomal protein L 100.0 5.5E-73 1.9E-77 472.1 23.9 183 16-198 24-206 (212)
2 3v2d_H 50S ribosomal protein L 100.0 2.9E-73 9.8E-78 465.0 19.9 180 20-199 1-180 (180)
3 3bbo_I Ribosomal protein L6; l 100.0 1.3E-74 4.3E-79 485.4 11.7 194 6-199 29-223 (223)
4 1rl6_A Protein (ribosomal prot 100.0 4.3E-72 1.5E-76 456.8 19.8 176 21-196 1-176 (177)
5 3r8s_G 50S ribosomal protein L 100.0 6.7E-72 2.3E-76 455.5 15.7 176 21-196 1-176 (176)
6 2zjr_E 50S ribosomal protein L 100.0 2.3E-73 7.9E-78 466.9 1.1 179 20-198 1-179 (185)
7 1vq8_E 50S ribosomal protein L 100.0 1E-55 3.6E-60 360.1 19.9 164 25-192 3-173 (178)
8 3j21_F 50S ribosomal protein L 100.0 9.6E-53 3.3E-57 344.5 18.3 166 25-194 8-180 (184)
9 2zkr_e 60S ribosomal protein L 100.0 6.1E-52 2.1E-56 341.8 16.4 158 24-184 6-175 (192)
10 3iz5_F 60S ribosomal protein L 100.0 8.7E-51 3E-55 334.4 18.4 158 24-184 6-174 (190)
11 4a17_E RPL9, 60S ribosomal pro 100.0 9.4E-51 3.2E-55 333.7 15.4 158 24-184 6-173 (188)
12 3u5e_H L8, RP24, YL11, 60S rib 100.0 9.4E-50 3.2E-54 328.5 19.0 158 24-184 6-175 (191)
13 2cql_A OK/SW-CL.103, 60S ribos 99.9 4.2E-28 1.4E-32 180.8 8.1 88 18-105 6-98 (100)
14 1vq8_E 50S ribosomal protein L 77.1 2.1 7.2E-05 34.1 3.7 55 35-94 95-152 (178)
15 4fei_A Heat shock protein-rela 74.5 6.4 0.00022 27.7 5.5 44 31-74 29-92 (102)
16 3gla_A Low molecular weight he 74.0 10 0.00034 26.3 6.4 44 31-74 27-95 (100)
17 3q9p_A Heat shock protein beta 70.5 8.7 0.0003 26.2 5.2 44 31-74 20-82 (85)
18 2cql_A OK/SW-CL.103, 60S ribos 67.6 4.3 0.00015 29.2 3.2 25 132-157 15-39 (100)
19 2zkr_e 60S ribosomal protein L 66.0 4.8 0.00016 32.3 3.5 51 39-94 108-164 (192)
20 4eld_A MJ16.5-P1, small heat s 65.0 13 0.00044 28.3 5.7 45 31-75 79-149 (161)
21 3u5e_H L8, RP24, YL11, 60S rib 63.4 6 0.0002 31.8 3.6 52 39-95 108-165 (191)
22 4a17_E RPL9, 60S ribosomal pro 56.4 7 0.00024 31.3 2.8 60 31-95 98-163 (188)
23 2y1y_A Alpha-crystallin B chai 55.4 30 0.001 23.5 5.8 44 31-74 19-81 (90)
24 2wj5_A Heat shock protein beta 54.4 30 0.001 24.1 5.8 45 31-75 24-87 (101)
25 3j21_F 50S ribosomal protein L 53.8 80 0.0027 24.9 8.7 57 35-96 100-159 (184)
26 3l1e_A Alpha-crystallin A chai 52.2 26 0.0009 24.7 5.2 45 31-75 25-88 (106)
27 2zjr_E 50S ribosomal protein L 49.6 12 0.00041 29.8 3.2 22 28-49 115-137 (185)
28 1rl6_A Protein (ribosomal prot 49.6 11 0.00039 29.7 3.0 54 35-93 94-149 (177)
29 3r8s_G 50S ribosomal protein L 47.3 14 0.00047 29.2 3.2 59 31-94 90-150 (176)
30 1nkw_E 50S ribosomal protein L 46.3 15 0.0005 30.0 3.3 51 38-93 125-177 (212)
31 3aab_A Putative uncharacterize 42.0 64 0.0022 23.0 6.0 44 31-74 47-113 (123)
32 3v2d_H 50S ribosomal protein L 41.8 20 0.00069 28.3 3.3 21 134-155 9-29 (180)
33 2bol_A TSP36, small heat shock 39.9 51 0.0018 28.1 5.9 45 31-75 125-187 (314)
34 2klr_A Alpha-crystallin B chai 38.2 53 0.0018 25.5 5.3 45 31-75 86-149 (175)
35 1gme_A Heat shock protein 16.9 35.8 52 0.0018 24.7 4.8 44 32-75 67-136 (151)
36 3bbo_I Ribosomal protein L6; l 35.6 15 0.00052 30.2 1.7 53 36-93 139-193 (223)
37 1x4m_A FAR upstream element bi 32.7 63 0.0021 22.1 4.5 30 149-179 63-93 (94)
38 3iz5_F 60S ribosomal protein L 31.9 1.4E+02 0.0049 23.5 7.0 61 30-95 98-164 (190)
39 2bol_A TSP36, small heat shock 27.7 69 0.0024 27.3 4.7 43 31-73 247-310 (314)
40 2opv_A KHSRP protein; KH domai 27.6 84 0.0029 20.9 4.3 20 150-170 63-82 (85)
41 4fqn_A Malcavernin; helical do 26.0 23 0.0008 25.4 1.1 17 156-172 30-46 (98)
42 4gb3_3 Coat protein 3; capsid 23.5 69 0.0024 26.2 3.7 57 82-138 94-170 (238)
43 2gjh_A Designed protein; oblig 23.1 49 0.0017 20.9 2.1 18 32-49 33-50 (62)
44 1qys_A TOP7; alpha-beta, novel 22.2 54 0.0019 22.8 2.4 22 32-53 77-100 (106)
45 1m11_3 Coat protein VP3; decay 21.6 1.2E+02 0.004 24.7 4.8 56 83-138 95-170 (238)
46 3lyw_A YBBR family protein; st 21.1 1E+02 0.0036 21.4 3.8 25 129-153 58-82 (90)
No 1
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=5.5e-73 Score=472.05 Aligned_cols=183 Identities=47% Similarity=0.762 Sum_probs=179.3
Q ss_pred ccccccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcc
Q 029116 16 IECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMV 95 (199)
Q Consensus 16 ~~~~~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi 95 (199)
..|+|||||+.||.||+||+|+++++.|+|+||+|+|+++|++.+++..+++.|.++.|+++++++|+|||+||||+|||
T Consensus 24 ~~~~MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI 103 (212)
T 1nkw_E 24 KEDNMSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAV 103 (212)
T ss_pred cccccccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHhhCEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCc
Q 029116 96 VGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEP 175 (199)
Q Consensus 96 ~GVt~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~ 175 (199)
+|||+||+++|+++|+||||.++|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|+|+||||||+||+||+|||
T Consensus 104 ~GVt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~VGq~AA~IR~~R~PEP 183 (212)
T 1nkw_E 104 KGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDA 183 (212)
T ss_pred EeeccCeEEEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeecCeEEEeccCcccCC
Q 029116 176 YKGKGVKYVDEVIRRKEGKAGKK 198 (199)
Q Consensus 176 YkgkGi~~~~e~i~~K~gKk~k~ 198 (199)
||||||+|.||+|++|+||++|+
T Consensus 184 YKGKGIry~~E~I~rK~gK~~k~ 206 (212)
T 1nkw_E 184 YHGKGVRFVGEQIALKAGKAGAT 206 (212)
T ss_pred cCCCcEeECCeEEEEcCccccCC
Confidence 99999999999999999998765
No 2
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=2.9e-73 Score=465.00 Aligned_cols=180 Identities=48% Similarity=0.779 Sum_probs=172.8
Q ss_pred ccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccc
Q 029116 20 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 99 (199)
Q Consensus 20 ~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt 99 (199)
|||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.++++++.|.++.|+++++++|+|||+||||+|||+|||
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 80 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCTTSEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCCCEEEEEECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 029116 100 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 179 (199)
Q Consensus 100 ~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykgk 179 (199)
+||+++|+++|+||||.++|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|+|+||||||+||++|+|||||||
T Consensus 81 ~Gf~~kL~lvgvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGK 160 (180)
T 3v2d_H 81 EGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK 160 (180)
T ss_dssp TCEEEEEEEESTTCEEEEETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHHHHHHHHHHHHHHTCCCSSSSC
T ss_pred CCcEEEEEEEEEeeEEEECCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHhcccCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccCCC
Q 029116 180 GVKYVDEVIRRKEGKAGKKK 199 (199)
Q Consensus 180 Gi~~~~e~i~~K~gKk~k~~ 199 (199)
||+|.||+|++|+||++|||
T Consensus 161 GIry~~e~I~~K~gK~~~k~ 180 (180)
T 3v2d_H 161 GIYYAGEPVRLKPGKAGAKK 180 (180)
T ss_dssp EEEETTCCCCCCCCC-----
T ss_pred cccCCCEEEEEeCccccCCC
Confidence 99999999999999998765
No 3
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.3e-74 Score=485.42 Aligned_cols=194 Identities=81% Similarity=1.282 Sum_probs=178.1
Q ss_pred ccccccccccccccccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEE-EEeCCEEEEEeccchhhhhhHH
Q 029116 6 VNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKV-DREDSFLRVRKTVETRRANQMH 84 (199)
Q Consensus 6 ~~~~~~~~~~~~~~~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i-~~~~~~i~i~~~~~~k~~~a~~ 84 (199)
.-+.|+.|.+..|+|||||++||.||+||+|+++++.|+|+||+|+|+++|++.+++ +.+++.|.++.|+++++++|+|
T Consensus 29 ~~~~~~~~~~~~~~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~ 108 (223)
T 3bbo_I 29 FAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMH 108 (223)
T ss_dssp -------------CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHH
T ss_pred cccccchhhhcccccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEecCCEEEEEcCCCcHHHHHHH
Confidence 445677777778999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHhhcccccccceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHH
Q 029116 85 GLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFA 164 (199)
Q Consensus 85 gT~~sli~Nmi~GVt~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~A 164 (199)
||+||||+|||+|||+||+++|+++|+||||.++|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||+|||||
T Consensus 109 Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiDKq~Vgq~A 188 (223)
T 3bbo_I 109 GLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFA 188 (223)
T ss_dssp HHHTTTTTHHHHHTTTCEEECEECCSTTCCEEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHH
T ss_pred HHHHHHhhcEEEeeccCcEEEEEEeeeceEEEecCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCccccCceeecCeEEEeccCcccCCC
Q 029116 165 ASIRKWRPPEPYKGKGVKYVDEVIRRKEGKAGKKK 199 (199)
Q Consensus 165 A~Ir~~r~pe~YkgkGi~~~~e~i~~K~gKk~k~~ 199 (199)
|+||++|||||||||||+|.||+|++|+||++|||
T Consensus 189 A~IR~~R~PEPYKGKGI~y~~E~I~rK~gK~~kkk 223 (223)
T 3bbo_I 189 ATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223 (223)
T ss_dssp HHTTSSSCCCTTTCCSCEETTCCCCCCCCCCSCCC
T ss_pred HHHhccCCCCCcCCCcEeECCeEEEEeccccccCC
Confidence 99999999999999999999999999999998775
No 4
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=4.3e-72 Score=456.84 Aligned_cols=176 Identities=48% Similarity=0.880 Sum_probs=162.6
Q ss_pred cccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhccccccc
Q 029116 21 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 100 (199)
Q Consensus 21 Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~ 100 (199)
||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.+..+++.+.++.|+++++++|+|||+||||+|||+|||+
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~ 80 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCc
Q 029116 101 GFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 180 (199)
Q Consensus 101 Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~YkgkG 180 (199)
||+++|+++|+||||+++|+.|.|+||||||+.++||+||+++++++|+|+|+|+|+|+||||||+||++||||||||||
T Consensus 81 Gf~~~L~lvGvGyra~~~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~Vgq~AA~Ir~~R~PepYKGKG 160 (177)
T 1rl6_A 81 GYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKG 160 (177)
T ss_dssp CEEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCE
T ss_pred CcEEEEEEEeeceEEEecCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEeccCccc
Q 029116 181 VKYVDEVIRRKEGKAG 196 (199)
Q Consensus 181 i~~~~e~i~~K~gKk~ 196 (199)
|+|.||+|+||+||++
T Consensus 161 I~y~~E~i~~K~gK~~ 176 (177)
T 1rl6_A 161 IRYEGELVRLKEGKTG 176 (177)
T ss_dssp EEETTCCCCC------
T ss_pred EeECCeEEEEcCccCC
Confidence 9999999999999986
No 5
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=6.7e-72 Score=455.47 Aligned_cols=176 Identities=47% Similarity=0.765 Sum_probs=173.7
Q ss_pred cccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhccccccc
Q 029116 21 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 100 (199)
Q Consensus 21 Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~ 100 (199)
||||++||.||+||+|+++++.|+|+||+|+|+++|++.+.++++++.+.++.|+++++++|+|||+||||+|||+|||+
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 80 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCSSCEEEEETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCCCEEEEEeCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccCc
Q 029116 101 GFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKG 180 (199)
Q Consensus 101 Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~YkgkG 180 (199)
||+++|+++|+||||+++|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|+|+||||||+||++||||||||||
T Consensus 81 Gf~~kL~lvgvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGKG 160 (176)
T 3r8s_G 81 GFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKG 160 (176)
T ss_dssp CEEECEEEESTTCEEECSSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHHHHHHHHHHHHHTTCCCSSSCCE
T ss_pred CeEEEEEEeeeeeEEEeCCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHhhccCCCCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEeccCccc
Q 029116 181 VKYVDEVIRRKEGKAG 196 (199)
Q Consensus 181 i~~~~e~i~~K~gKk~ 196 (199)
|+|.||+|+||+|||+
T Consensus 161 I~y~~E~i~~K~gKkk 176 (176)
T 3r8s_G 161 VRYADEVVRTKEAKKK 176 (176)
T ss_dssp EEESSCCCCCCCCCCC
T ss_pred eeECCeEEEeccccCC
Confidence 9999999999999974
No 6
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=2.3e-73 Score=466.88 Aligned_cols=179 Identities=47% Similarity=0.780 Sum_probs=169.0
Q ss_pred ccccccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccc
Q 029116 20 ESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVS 99 (199)
Q Consensus 20 ~Srigk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt 99 (199)
|||||+.||.||+||+|+++++.|+|+||+|+|+++|++.++++.+++.+.++.|+++++++|+|||+||||+|||+|||
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt 80 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 80 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeec
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeeeeEEEEeCCeEEEEcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 029116 100 KGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 179 (199)
Q Consensus 100 ~Gf~~~L~lvGvGyrv~~~~~~L~l~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykgk 179 (199)
+||+++|+++|+||||+++|+.|.|+||||||+.++||+||+++++++|+|+|+|+|+|+||||||+||++|||||||||
T Consensus 81 ~Gf~kkL~lvGvGYra~~~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~Vgq~AA~Ir~~R~PepYKGK 160 (185)
T 2zjr_E 81 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK 160 (185)
T ss_dssp HCEEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred cCcEEEEEEeeeccEEEEcCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHHHHHHHHHHhccCCCCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCeEEEeccCcccCC
Q 029116 180 GVKYVDEVIRRKEGKAGKK 198 (199)
Q Consensus 180 Gi~~~~e~i~~K~gKk~k~ 198 (199)
||+|.||+|+||+||++|+
T Consensus 161 GI~y~~E~i~~K~gK~~k~ 179 (185)
T 2zjr_E 161 GVRFVGEQIALKAGKAGAT 179 (185)
T ss_dssp BCCCSSCCCCCCCCC----
T ss_pred cEeECCeEEEEcCccccCC
Confidence 9999999999999998765
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=1e-55 Score=360.12 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=157.5
Q ss_pred cCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEc-CCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccceE
Q 029116 25 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVY-PREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFE 103 (199)
Q Consensus 25 k~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~-~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~Gf~ 103 (199)
+.||.||+||+|+++++.|+|+||+|+|+++| ++.+.+..+++.+.++.|+++++++|+|||+||||+||++|||+||+
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~ 82 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWE 82 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccCeE
Confidence 36999999999999999999999999999999 66899999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeee--EEEEeCCeEEE--EcceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 029116 104 KKLQMVGVGY--RAALEGQVLVL--SLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 179 (199)
Q Consensus 104 ~~L~lvGvGy--rv~~~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykgk 179 (199)
++|+++|+|| ||+++|+.|.| +||||||+.+++|+||++++++ |+|+|+|+|||+||||||+||++|+| |||
T Consensus 83 ~~L~ivGvGypira~~~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G~Dkq~Vgq~AA~Ir~~r~p---KGK 158 (178)
T 1vq8_E 83 YGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTRI---NDK 158 (178)
T ss_dssp EEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHHHHHHHHTTCC---SSS
T ss_pred EEEEEEeeCCceEEEEcCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEECCHHHHHHHHHHHhccCCC---CCC
Confidence 9999999999 99999999999 8999999999999999999998 89999999999999999999999999 999
Q ss_pred ce--eecCeEEEecc
Q 029116 180 GV--KYVDEVIRRKE 192 (199)
Q Consensus 180 Gi--~~~~e~i~~K~ 192 (199)
|| |..+++|.-|.
T Consensus 159 GIr~F~DGiyi~~k~ 173 (178)
T 1vq8_E 159 DVRVFQDGVYITRKP 173 (178)
T ss_dssp CTTTCCCEEEEEECC
T ss_pred ceeEEECCEEEEecc
Confidence 99 67788887763
No 8
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.6e-53 Score=344.48 Aligned_cols=166 Identities=30% Similarity=0.471 Sum_probs=156.0
Q ss_pred cCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcC-CCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccceE
Q 029116 25 KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYP-REVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFE 103 (199)
Q Consensus 25 k~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~-~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~Gf~ 103 (199)
+.||.||+||+|+++++.|+|+||+|+|+++|+ +.+.++++++.+.++.|+++|+++|+|||+||||+|||+|||+||+
T Consensus 8 ~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~ 87 (184)
T 3j21_F 8 REEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGFT 87 (184)
T ss_dssp EEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred eEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCeE
Confidence 579999999999999999999999999999996 4899999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeee--EEEEeCCeEEEE--cceeeeEEEECCCCeEEEEccCCeEEEEeccHHHHHHHHHHhhccCCCCccccC
Q 029116 104 KKLQMVGVGY--RAALEGQVLVLS--LGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGK 179 (199)
Q Consensus 104 ~~L~lvGvGy--rv~~~~~~L~l~--LG~Sh~i~~~IP~~Vkv~~~~~t~Iil~GiDke~Vgq~AA~Ir~~r~pe~Ykgk 179 (199)
++|+++|+|| +|.++|+.|.+. ||||||+.++||+||+|+++++ +|+|+|+|+|+|||+||+||++++ ||||
T Consensus 88 ~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~Dke~Vgq~AA~Ir~~~~---vK~K 163 (184)
T 3j21_F 88 YKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGIDKEAVGQTAANIEQATR---ITKW 163 (184)
T ss_dssp EEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESCHHHHHHHHHHHHHHHC---CCSS
T ss_pred EEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECCHHHHHHHHHHHhhccc---cCCC
Confidence 9999999999 999999999884 9999999999999999999986 999999999999999999999996 9999
Q ss_pred ceeec--CeEEEeccCc
Q 029116 180 GVKYV--DEVIRRKEGK 194 (199)
Q Consensus 180 Gi~~~--~e~i~~K~gK 194 (199)
+||++ +-+|.-|.||
T Consensus 164 DiR~F~DGiyv~ek~~~ 180 (184)
T 3j21_F 164 DRRIFQDGIYIVEKAGK 180 (184)
T ss_dssp CSSSCCCEEEESCSSSC
T ss_pred cccEeeCCEEEEecCcc
Confidence 99986 5566656555
No 9
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.1e-52 Score=341.84 Aligned_cols=158 Identities=26% Similarity=0.383 Sum_probs=147.2
Q ss_pred ccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEEeCCE---EEEEeccchhhhhhHHHHHHHHHhhcccccc
Q 029116 24 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDREDSF---LRVRKTVETRRANQMHGLFRTLTDNMVVGVS 99 (199)
Q Consensus 24 gk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~i~i~~~~~~---i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt 99 (199)
.+.||.||+||+|+++++.|+|+||+|+|+++|++ .+.++.+++. +.++.|+++++++|+|||+||||+|||+|||
T Consensus 6 ~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~GVt 85 (192)
T 2zkr_e 6 SNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVT 85 (192)
T ss_dssp ----CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeec
Confidence 57899999999999999999999999999999998 7999999999 9999999999999999999999999999999
Q ss_pred cceEEEEEEEeeeeEEE--E--eCCeEEE--EcceeeeEEEECCCCeEEEEccC--CeEEEEeccHHHHHHHHHHhhccC
Q 029116 100 KGFEKKLQMVGVGYRAA--L--EGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWR 171 (199)
Q Consensus 100 ~Gf~~~L~lvGvGyrv~--~--~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~--t~Iil~GiDke~Vgq~AA~Ir~~r 171 (199)
+||+++|+++|+||||. + +|+.|.| +||||||+.++||+||+++++++ |+|+|+|+|||+||||||+||++|
T Consensus 86 ~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA~IR~~~ 165 (192)
T 2zkr_e 86 LGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQAT 165 (192)
T ss_dssp TCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHHHHHHHHHhhC
Confidence 99999999999999977 7 5778999 89999999999999999999987 999999999999999999999999
Q ss_pred CCCccccCceeec
Q 029116 172 PPEPYKGKGVKYV 184 (199)
Q Consensus 172 ~pe~YkgkGi~~~ 184 (199)
++ |+|.+|-+
T Consensus 166 ~v---k~kD~R~F 175 (192)
T 2zkr_e 166 TV---KNKDIRKF 175 (192)
T ss_dssp CC---SSSCTTTC
T ss_pred cC---CCCCccEe
Confidence 87 88887754
No 10
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=8.7e-51 Score=334.38 Aligned_cols=158 Identities=20% Similarity=0.343 Sum_probs=149.0
Q ss_pred ccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEE--eCCEEEEEeccchhhhhhHHHHHHHHHhhccccccc
Q 029116 24 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDR--EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSK 100 (199)
Q Consensus 24 gk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~i~i~~--~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~ 100 (199)
.++||.||+||+|+++++.|+|+||+|+|+++|+| .+.+.+ +++.+.++.|+++|+++|+|||+||||+|||+|||+
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~ 85 (190)
T 3iz5_F 6 ASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTK 85 (190)
T ss_dssp CCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhheeeecc
Confidence 67899999999999999999999999999999975 699998 899999999999999999999999999999999999
Q ss_pred ceEEEEEEEeeeeEEEE----eCCeEEEE--cceeeeEEEECCCCeEEEEccC--CeEEEEeccHHHHHHHHHHhhccCC
Q 029116 101 GFEKKLQMVGVGYRAAL----EGQVLVLS--LGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWRP 172 (199)
Q Consensus 101 Gf~~~L~lvGvGyrv~~----~~~~L~l~--LG~Sh~i~~~IP~~Vkv~~~~~--t~Iil~GiDke~Vgq~AA~Ir~~r~ 172 (199)
||+|+|+++|+||||.+ +|+.|.|. ||||||+.++||+||+|+++++ |+|+|+|+|+|+|||+||+||+.+
T Consensus 86 Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq~~- 164 (190)
T 3iz5_F 86 GYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKC- 164 (190)
T ss_dssp CEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHHHHHHHHHT-
T ss_pred CEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHhhc-
Confidence 99999999999999654 68899996 9999999999999999999987 799999999999999999999999
Q ss_pred CCccccCceeec
Q 029116 173 PEPYKGKGVKYV 184 (199)
Q Consensus 173 pe~YkgkGi~~~ 184 (199)
.+|+|.||-+
T Consensus 165 --~vk~kD~R~F 174 (190)
T 3iz5_F 165 --HVKNKDIRKF 174 (190)
T ss_dssp --CCCSSCTTTC
T ss_pred --cccCCcccEe
Confidence 4899988755
No 11
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=9.4e-51 Score=333.68 Aligned_cols=158 Identities=21% Similarity=0.373 Sum_probs=148.5
Q ss_pred ccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEEE-eCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccc
Q 029116 24 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKG 101 (199)
Q Consensus 24 gk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~i~i~~-~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~G 101 (199)
.++||.||+||+|+++++.|+|+||+|+|+++|++ .+.+.+ +++.+.++.|+++|+++|+|||+||||+|||+|||+|
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (188)
T 4a17_E 6 TEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEG 85 (188)
T ss_dssp EEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccC
Confidence 57899999999999999999999999999999987 689988 8999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeeeEEE--E--eCCeEEE--EcceeeeEEEECCCCeEEEEccC--CeEEEEeccHHHHHHHHHHhhccCCC
Q 029116 102 FEKKLQMVGVGYRAA--L--EGQVLVL--SLGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWRPP 173 (199)
Q Consensus 102 f~~~L~lvGvGyrv~--~--~~~~L~l--~LG~Sh~i~~~IP~~Vkv~~~~~--t~Iil~GiDke~Vgq~AA~Ir~~r~p 173 (199)
|+|+|+++|+||||. + +|+.|.| +||||||+.++||+||+|+++++ |+|+|+|+|+|+|||+||+||+.+
T Consensus 86 f~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~-- 163 (188)
T 4a17_E 86 YKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSC-- 163 (188)
T ss_dssp EEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHT--
T ss_pred eEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhc--
Confidence 999999999999954 4 5778999 49999999999999999999998 899999999999999999999999
Q ss_pred CccccCceeec
Q 029116 174 EPYKGKGVKYV 184 (199)
Q Consensus 174 e~YkgkGi~~~ 184 (199)
.+|+|.||-+
T Consensus 164 -~vk~kD~R~F 173 (188)
T 4a17_E 164 -LVKEKDIRQF 173 (188)
T ss_dssp -CCCSSCHHHH
T ss_pred -ccCCCcccEe
Confidence 6899988754
No 12
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=9.4e-50 Score=328.47 Aligned_cols=158 Identities=24% Similarity=0.412 Sum_probs=148.2
Q ss_pred ccCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcCC-CeEEE-EeCCEEEEEeccchhhhhhHHHHHHHHHhhcccccccc
Q 029116 24 GKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR-EVKVD-REDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKG 101 (199)
Q Consensus 24 gk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~i~i~-~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~GVt~G 101 (199)
.+.||.||+||+|+++++.|+|+||+|+|+++|++ .+.++ .+++.+.++.|+++|+++|+|||+||||+|||+|||+|
T Consensus 6 ~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 85 (191)
T 3u5e_H 6 TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKG 85 (191)
T ss_dssp EEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccC
Confidence 56899999999999999999999999999999987 57777 67999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeeeE--EEE----eCCeEEEE--cceeeeEEEECCCCeEEEEccC--CeEEEEeccHHHHHHHHHHhhccC
Q 029116 102 FEKKLQMVGVGYR--AAL----EGQVLVLS--LGFSHPVRMTIPDGIKVNVEEN--TRITVSGYDKSAIGQFAASIRKWR 171 (199)
Q Consensus 102 f~~~L~lvGvGyr--v~~----~~~~L~l~--LG~Sh~i~~~IP~~Vkv~~~~~--t~Iil~GiDke~Vgq~AA~Ir~~r 171 (199)
|+|+|+++|+||| |.+ +|+.|.+. ||||||+.+++|+||+|+++++ |+|+|+|+|+|+|||+||+||+.+
T Consensus 86 f~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~ 165 (191)
T 3u5e_H 86 YKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQIC 165 (191)
T ss_dssp EEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhc
Confidence 9999999999998 677 78889995 9999999999999999999985 999999999999999999999998
Q ss_pred CCCccccCceeec
Q 029116 172 PPEPYKGKGVKYV 184 (199)
Q Consensus 172 ~pe~YkgkGi~~~ 184 (199)
-.|+|.||-+
T Consensus 166 ---~vk~kD~R~F 175 (191)
T 3u5e_H 166 ---RVRNKDIRKF 175 (191)
T ss_dssp ---CCCSSCTTTC
T ss_pred ---ccCCCcccEe
Confidence 5788888744
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.95 E-value=4.2e-28 Score=180.76 Aligned_cols=88 Identities=30% Similarity=0.362 Sum_probs=83.3
Q ss_pred ccccccc-cCCeeeCCCcEEEEeCCEEEEEeCCeEEEEEcC-CCeEEEEeCCE---EEEEeccchhhhhhHHHHHHHHHh
Q 029116 18 CKESRIG-KQPIEVPSNVTITLGGQDLKVKGPLGELSLVYP-REVKVDREDSF---LRVRKTVETRRANQMHGLFRTLTD 92 (199)
Q Consensus 18 ~~~Srig-k~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~-~~i~i~~~~~~---i~i~~~~~~k~~~a~~gT~~sli~ 92 (199)
+.|+||+ ++||.||+||+|+++++.|+|+||+|+|+++|+ +.+.++++++. |.++.|+++|+++|+|||+||||+
T Consensus 6 ~~Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~~~~~i~v~~~~~~k~~ra~~Gt~RslI~ 85 (100)
T 2cql_A 6 SGMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQ 85 (100)
T ss_dssp SSCCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHH
T ss_pred cccccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCCceeEEEEEccCCCHHHHHHHHHHHHHHH
Confidence 5699999 999999999999999999999999999999999 68999998777 999999999999999999999999
Q ss_pred hcccccccceEEE
Q 029116 93 NMVVGVSKGFEKK 105 (199)
Q Consensus 93 Nmi~GVt~Gf~~~ 105 (199)
|||+|||+||+|.
T Consensus 86 NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 86 NMIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHHTSCCSC
T ss_pred hhhEeecCCEEEc
Confidence 9999999999874
No 14
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=77.06 E-value=2.1 Score=34.13 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=37.1
Q ss_pred EEEEeCCEEEEEeCCe---EEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhc
Q 029116 35 TITLGGQDLKVKGPLG---ELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNM 94 (199)
Q Consensus 35 ~v~i~~~~v~vkGp~G---~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nm 94 (199)
.+.++++.|.++.-+| ....++|..+.++..++.|.++-.+ +...|.++|.|+..
T Consensus 95 ra~~~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~~~I~v~G~D-----kq~Vgq~AA~Ir~~ 152 (178)
T 1vq8_E 95 QVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPD-----IEAVGQTAADIEQL 152 (178)
T ss_dssp EEEEETTEEEEESGGGCSSCEEEECCTTCEEEEETTEEEEEESC-----HHHHHHHHHHHHHT
T ss_pred EEEEcCCEEEEEccccccccEEEeCCCCeEEEEeCCEEEEEECC-----HHHHHHHHHHHhcc
Confidence 5666777777754444 4477777778777777777776443 35677777777764
No 15
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=74.55 E-value=6.4 Score=27.71 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCCcEEEEeCCEEEEEeC-------------CeEEEEEc--CC-----CeEEEEeCCEEEEEec
Q 029116 31 PSNVTITLGGQDLKVKGP-------------LGELSLVY--PR-----EVKVDREDSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp-------------~G~l~~~~--~~-----~i~i~~~~~~i~i~~~ 74 (199)
|++++|+++++.|+|+|- .|...+.| |. .+...++++.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEEEEEEE
Confidence 468999999999999984 46776654 42 3566778898888755
No 16
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=74.01 E-value=10 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCEEEEEeC------------------CeEEEEEc--CC-----CeEEEEeCCEEEEEec
Q 029116 31 PSNVTITLGGQDLKVKGP------------------LGELSLVY--PR-----EVKVDREDSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp------------------~G~l~~~~--~~-----~i~i~~~~~~i~i~~~ 74 (199)
|++|+|+++++.|+|+|- .|...+.| |. .+...++++.|.|...
T Consensus 27 ~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 95 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRNGVLEIRIP 95 (100)
T ss_dssp GGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEETTEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeCCEEEEEEe
Confidence 478999999999999983 35666554 42 3666778898888754
No 17
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=70.48 E-value=8.7 Score=26.16 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCCcEEEEeCCEEEEEeCC-----------eEEEEEc--CCC-----eEEEEe-CCEEEEEec
Q 029116 31 PSNVTITLGGQDLKVKGPL-----------GELSLVY--PRE-----VKVDRE-DSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~-----------G~l~~~~--~~~-----i~i~~~-~~~i~i~~~ 74 (199)
|++++|++.++.|+|+|-. |+..+.| |.. +.-.+. ++.|.|...
T Consensus 20 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP 82 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP 82 (85)
T ss_dssp CSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence 5889999999999999963 5566654 322 555666 788877654
No 18
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=67.64 E-value=4.3 Score=29.16 Aligned_cols=25 Identities=16% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEECCCCeEEEEccCCeEEEEeccH
Q 029116 132 VRMTIPDGIKVNVEENTRITVSGYDK 157 (199)
Q Consensus 132 i~~~IP~~Vkv~~~~~t~Iil~GiDk 157 (199)
..+.||+||+|++.+. .|.++|.-=
T Consensus 15 ~pI~IP~gV~V~i~~~-~VtVKGPkG 39 (100)
T 2cql_A 15 QTVDIPENVDITLKGR-TVIVKGPRG 39 (100)
T ss_dssp EEECCCSSCEEEEETT-EEEEEETTE
T ss_pred CcEEcCCCCEEEEeCC-EEEEECCCc
Confidence 3568999999999764 788888753
No 19
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=65.98 E-value=4.8 Score=32.35 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=26.5
Q ss_pred eCCEEEEEeCCe---EEEEEcCCCeEEEEeC---CEEEEEeccchhhhhhHHHHHHHHHhhc
Q 029116 39 GGQDLKVKGPLG---ELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNM 94 (199)
Q Consensus 39 ~~~~v~vkGp~G---~l~~~~~~~i~i~~~~---~~i~i~~~~~~k~~~a~~gT~~sli~Nm 94 (199)
+++.+.++--+| ....++|..+.++..+ ..|.++-.+ +...|.++|.|+..
T Consensus 108 ~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiD-----Kq~Vgq~AA~IR~~ 164 (192)
T 2zkr_e 108 NGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGND-----IELVSNSAALIQQA 164 (192)
T ss_dssp TCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESC-----HHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCC-----HHHHHHHHHHHHhh
Confidence 345555532332 3455666666666543 355554333 34566666666654
No 20
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=65.03 E-value=13 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCCcEEEEeCCEEEEEe-------------------CCeEEEEEc--CC-----CeEEEEeCCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKG-------------------PLGELSLVY--PR-----EVKVDREDSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkG-------------------p~G~l~~~~--~~-----~i~i~~~~~~i~i~~~~ 75 (199)
|++|+|+++++.|+|+| ..|...+.| |. .+...++++.|.|....
T Consensus 79 ~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lpK 149 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK 149 (161)
T ss_dssp GGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEETTEEEEEEEB
T ss_pred hHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEEECCEEEEEEEc
Confidence 37899999999999998 345666654 42 25666789999887653
No 21
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=63.44 E-value=6 Score=31.75 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=36.3
Q ss_pred eCCEEEEE---eCCeEEEEEcCCCeEEEEeC---CEEEEEeccchhhhhhHHHHHHHHHhhcc
Q 029116 39 GGQDLKVK---GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMV 95 (199)
Q Consensus 39 ~~~~v~vk---Gp~G~l~~~~~~~i~i~~~~---~~i~i~~~~~~k~~~a~~gT~~sli~Nmi 95 (199)
+++.|.++ |=.--...++|..+.++..+ ..|.++-.+ +...|.++|.|++..
T Consensus 108 ~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~D-----ke~Vgq~AA~Irq~~ 165 (191)
T 3u5e_H 108 GAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNS-----VEDVSQNAADLQQIC 165 (191)
T ss_dssp SCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESC-----HHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECC-----HHHHHHHHHHHHhhc
Confidence 56777775 55556777788788888765 577776444 456777888888754
No 22
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=56.40 E-value=7 Score=31.27 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeC---CEEEEEeccchhhhhhHHHHHHHHHhhcc
Q 029116 31 PSNVTITLGGQDLKVK---GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMV 95 (199)
Q Consensus 31 P~~V~v~i~~~~v~vk---Gp~G~l~~~~~~~i~i~~~~---~~i~i~~~~~~k~~~a~~gT~~sli~Nmi 95 (199)
|..+.+.-+++.|.++ |=.--...++|..+.++..+ ..|.++-.+ +...|.++|.|++.-
T Consensus 98 r~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~D-----ke~Vgq~AA~Ir~~~ 163 (188)
T 4a17_E 98 PIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGID-----LNNVSQTCALIHQSC 163 (188)
T ss_dssp CCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESC-----HHHHHHHHHHHHHHT
T ss_pred cceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcC-----HHHHHHHHHHHHhhc
Confidence 3333343367778886 65666777888888888765 567776544 466778888888754
No 23
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=55.35 E-value=30 Score=23.51 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCCcEEEEeCCEEEEEeCCeE-----------EEE--EcCCC-----eEEEE-eCCEEEEEec
Q 029116 31 PSNVTITLGGQDLKVKGPLGE-----------LSL--VYPRE-----VKVDR-EDSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G~-----------l~~--~~~~~-----i~i~~-~~~~i~i~~~ 74 (199)
|++++|++.++.|+|+|..-. ..+ .||.. +...+ +++.|.|...
T Consensus 19 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~p 81 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGP 81 (90)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEEC
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence 468899999999999997532 222 34432 56667 6888887654
No 24
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=54.42 E-value=30 Score=24.12 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCCcEEEEeCCEEEEEeCCeE-----------E--EEEcCC-----CeEEEE-eCCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKGPLGE-----------L--SLVYPR-----EVKVDR-EDSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G~-----------l--~~~~~~-----~i~i~~-~~~~i~i~~~~ 75 (199)
|++++|++.++.|+|+|-... . ++.||. .+.-.+ +++.|.|....
T Consensus 24 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I~lPK 87 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATP 87 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEEEECB
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEEEEEC
Confidence 478999999999999997643 2 234443 256678 68888887553
No 25
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.75 E-value=80 Score=24.89 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=41.7
Q ss_pred EEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeCCEEEEEeccchhhhhhHHHHHHHHHhhccc
Q 029116 35 TITLGGQDLKVK---GPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVV 96 (199)
Q Consensus 35 ~v~i~~~~v~vk---Gp~G~l~~~~~~~i~i~~~~~~i~i~~~~~~k~~~a~~gT~~sli~Nmi~ 96 (199)
.+.++++.+.++ |=.--...++|..+.++..++.|.++-.+ +...|.++|.|++.-.
T Consensus 100 ra~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~~Iil~G~D-----ke~Vgq~AA~Ir~~~~ 159 (184)
T 3j21_F 100 SVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQEIIVEGID-----KEAVGQTAANIEQATR 159 (184)
T ss_dssp EEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETTEEEEEESC-----HHHHHHHHHHHHHHHC
T ss_pred eEEEcCCEEEEEecCCccccEEEECCCCeEEEecCCEEEEEECC-----HHHHHHHHHHHhhccc
Confidence 455678888886 55556777888888888888877776554 4667788888887643
No 26
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=52.23 E-value=26 Score=24.73 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCCcEEEEeCCEEEEEeCCe-------E----EEE--EcCC-----CeEEEE-eCCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKGPLG-------E----LSL--VYPR-----EVKVDR-EDSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G-------~----l~~--~~~~-----~i~i~~-~~~~i~i~~~~ 75 (199)
|++|+|++.++.|+|+|... . ..+ .||. .+...+ +++.|.|....
T Consensus 25 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~~PK 88 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 88 (106)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEEEEB
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence 57899999999999999542 2 222 3332 366677 68888887553
No 27
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=49.61 E-value=12 Score=29.85 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=15.5
Q ss_pred eeeCCCcEEEEeCC-EEEEEeCC
Q 029116 28 IEVPSNVTITLGGQ-DLKVKGPL 49 (199)
Q Consensus 28 I~IP~~V~v~i~~~-~v~vkGp~ 49 (199)
++||+||+|++.++ .|+++|..
T Consensus 115 ~~iP~gI~v~v~~~t~I~l~G~D 137 (185)
T 2zjr_E 115 IEPPAGVTFAVPEPTRIDVSGID 137 (185)
T ss_dssp CCCCTTEEEECSSTTEEEEEESS
T ss_pred EECCCCeEEEECCCCEEEEEecC
Confidence 47888888887654 67766653
No 28
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=49.60 E-value=11 Score=29.70 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=32.6
Q ss_pred EEEEeCCEEEEE-eCCeEEEEEcCCCeEEEEeCC-EEEEEeccchhhhhhHHHHHHHHHhh
Q 029116 35 TITLGGQDLKVK-GPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 93 (199)
Q Consensus 35 ~v~i~~~~v~vk-Gp~G~l~~~~~~~i~i~~~~~-~i~i~~~~~~k~~~a~~gT~~sli~N 93 (199)
.+.++++.|.+. |=.-....++|..++++..++ .|.++-.+ +...|.++|.|+.
T Consensus 94 ra~~~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~D-----kq~Vgq~AA~Ir~ 149 (177)
T 1rl6_A 94 RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGAD-----KQRVGELAANIRA 149 (177)
T ss_dssp EEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESC-----HHHHHHHHHHHHT
T ss_pred EEEecCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCC-----HHHHHHHHHHHhc
Confidence 445556655544 666667777777777766543 66665443 3556666776664
No 29
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=47.30 E-value=14 Score=29.17 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCEEEEE-eCCeEEEEEcCCCeEEEEeC-CEEEEEeccchhhhhhHHHHHHHHHhhc
Q 029116 31 PSNVTITLGGQDLKVK-GPLGELSLVYPREVKVDRED-SFLRVRKTVETRRANQMHGLFRTLTDNM 94 (199)
Q Consensus 31 P~~V~v~i~~~~v~vk-Gp~G~l~~~~~~~i~i~~~~-~~i~i~~~~~~k~~~a~~gT~~sli~Nm 94 (199)
+.|..+.++++.|.+. |=.-....++|..+.++..+ ..|.++-.+ +...|.++|.|+..
T Consensus 90 gvgyra~~~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~D-----ke~Vgq~AA~Ir~~ 150 (176)
T 3r8s_G 90 GVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGAD-----KQVIGQVAADLRAY 150 (176)
T ss_dssp STTCEEECSSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESC-----HHHHHHHHHHHHHT
T ss_pred eeeeEEEeCCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECc-----HHHHHHHHHHhhcc
Confidence 4555666667666543 55566777777777777644 567666443 35566777777653
No 30
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=46.33 E-value=15 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=26.0
Q ss_pred EeCCEEEEE-eCCeEEEEEcCCCeEEEEeCC-EEEEEeccchhhhhhHHHHHHHHHhh
Q 029116 38 LGGQDLKVK-GPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 93 (199)
Q Consensus 38 i~~~~v~vk-Gp~G~l~~~~~~~i~i~~~~~-~i~i~~~~~~k~~~a~~gT~~sli~N 93 (199)
++++.|.+. |=.-.+..++|..++++..++ .|.++-.+ +..+|.++|.|++
T Consensus 125 ~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiD-----Kq~VGq~AA~IR~ 177 (212)
T 1nkw_E 125 LTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGID-----KQLVGQVAANVRK 177 (212)
T ss_pred cCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCC-----HHHHHHHHHHHhc
Confidence 344443332 555556666666666655443 45554332 3445556666554
No 31
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=42.01 E-value=64 Score=23.04 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCCcEEEEeC-CEEEEEeCCe--------------EEEE--EcCC-----Ce-EEEEeCCEEEEEec
Q 029116 31 PSNVTITLGG-QDLKVKGPLG--------------ELSL--VYPR-----EV-KVDREDSFLRVRKT 74 (199)
Q Consensus 31 P~~V~v~i~~-~~v~vkGp~G--------------~l~~--~~~~-----~i-~i~~~~~~i~i~~~ 74 (199)
|++++|++.+ +.|+|+|..- ...+ .||. .+ ...++++.|.|...
T Consensus 47 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~GvL~I~lP 113 (123)
T 3aab_A 47 KEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113 (123)
T ss_dssp GGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEETTEEEEEEE
T ss_pred HHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcCCEEEEEEE
Confidence 4688999999 9999999842 2333 4442 36 66778888888755
No 32
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=41.78 E-value=20 Score=28.31 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=13.0
Q ss_pred EECCCCeEEEEccCCeEEEEec
Q 029116 134 MTIPDGIKVNVEENTRITVSGY 155 (199)
Q Consensus 134 ~~IP~~Vkv~~~~~t~Iil~Gi 155 (199)
+.||+||+|++.+. .++++|.
T Consensus 9 I~IP~gV~v~i~~~-~v~VkGp 29 (180)
T 3v2d_H 9 IPVPKGVSVEVAPG-RVKVKGP 29 (180)
T ss_dssp EECCTTCEEEEETT-EEEEECS
T ss_pred eeCCCCcEEEEeCC-EEEEEeC
Confidence 56788888877432 4455544
No 33
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=39.90 E-value=51 Score=28.12 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCcEEEEeCCEEEEEeCC----------eEEEEEc--CCC-----eEEEEe-CCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKGPL----------GELSLVY--PRE-----VKVDRE-DSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~----------G~l~~~~--~~~-----i~i~~~-~~~i~i~~~~ 75 (199)
|++|+|+++++.|+|+|-. |+..+.| |.. +...++ ++.|.|....
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK 187 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPV 187 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEB
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEec
Confidence 4799999999999999976 5666654 432 566788 9999887654
No 34
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=38.22 E-value=53 Score=25.52 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCCcEEEEeCCEEEEEeCCeE-----------EEE--EcCC-----CeEEEE-eCCEEEEEecc
Q 029116 31 PSNVTITLGGQDLKVKGPLGE-----------LSL--VYPR-----EVKVDR-EDSFLRVRKTV 75 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~G~-----------l~~--~~~~-----~i~i~~-~~~~i~i~~~~ 75 (199)
|++|+|++.++.|+|+|.... .++ .||. .+.-.+ +++.|.|....
T Consensus 86 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lPK 149 (175)
T 2klr_A 86 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 149 (175)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEEC
T ss_pred hHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEEC
Confidence 478999999999999997643 222 3443 266677 68888887553
No 35
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=35.84 E-value=52 Score=24.68 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCcEEEE-eCCEEEEEeCC------------------eEEEEE--cCC-----CeEEEEeCCEEEEEecc
Q 029116 32 SNVTITL-GGQDLKVKGPL------------------GELSLV--YPR-----EVKVDREDSFLRVRKTV 75 (199)
Q Consensus 32 ~~V~v~i-~~~~v~vkGp~------------------G~l~~~--~~~-----~i~i~~~~~~i~i~~~~ 75 (199)
++|+|++ +++.|+|+|-. |...+. ||. .+...++++.|.|....
T Consensus 67 edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK 136 (151)
T 1gme_A 67 EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 136 (151)
T ss_dssp GGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEEC
T ss_pred HHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEECCEEEEEEEc
Confidence 6789999 57899999853 445444 443 25666789988887553
No 36
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.62 E-value=15 Score=30.16 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=26.5
Q ss_pred EEEeCCEEEEE-eCCeEEEEEcCCCeEEEEeCC-EEEEEeccchhhhhhHHHHHHHHHhh
Q 029116 36 ITLGGQDLKVK-GPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDN 93 (199)
Q Consensus 36 v~i~~~~v~vk-Gp~G~l~~~~~~~i~i~~~~~-~i~i~~~~~~k~~~a~~gT~~sli~N 93 (199)
+.++++.|.+. |=.-....++|..+.++..++ .|.++-.+ +..+|.++|.|++
T Consensus 139 a~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiD-----Kq~Vgq~AA~IR~ 193 (223)
T 3bbo_I 139 ATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYD-----KSEIGQFAATVRK 193 (223)
T ss_dssp EEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESS-----SHHHHHHHHHTTS
T ss_pred EEecCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCC-----HHHHHHHHHHHhc
Confidence 33444444433 555555566665666655443 45554333 2445555555543
No 37
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=32.75 E-value=63 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=22.4
Q ss_pred eEEEEeccHHHHHHHHHHhhc-cCCCCccccC
Q 029116 149 RITVSGYDKSAIGQFAASIRK-WRPPEPYKGK 179 (199)
Q Consensus 149 ~Iil~GiDke~Vgq~AA~Ir~-~r~pe~Ykgk 179 (199)
.+.|+| |.+.|......|+. ++.++.|-+-
T Consensus 63 ~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~~ 93 (94)
T 1x4m_A 63 PLRITG-DPYKVQQAKEMVLELIRDQGSGPSS 93 (94)
T ss_dssp EEEEEE-CTTTHHHHHHHHHHHHCCCSSCSSC
T ss_pred EEEEEe-CHHHHHHHHHHHHHHHhccCCCCCC
Confidence 388999 88999888888776 5666666543
No 38
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=31.92 E-value=1.4e+02 Score=23.51 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=42.7
Q ss_pred eCCCcEEEEeCCEEEEE---eCCeEEEEEcCCCeEEEEeC---CEEEEEeccchhhhhhHHHHHHHHHhhcc
Q 029116 30 VPSNVTITLGGQDLKVK---GPLGELSLVYPREVKVDRED---SFLRVRKTVETRRANQMHGLFRTLTDNMV 95 (199)
Q Consensus 30 IP~~V~v~i~~~~v~vk---Gp~G~l~~~~~~~i~i~~~~---~~i~i~~~~~~k~~~a~~gT~~sli~Nmi 95 (199)
.|..+.+..+++.|.++ |=.--...++|..+.++..+ ..|.++-.+ +...|.++|.|++.-
T Consensus 98 yr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~D-----ke~Vgq~AA~Irq~~ 164 (190)
T 3iz5_F 98 FPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGND-----IELVSRSAALINQKC 164 (190)
T ss_dssp SCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESC-----HHHHHHHHHHHHHHT
T ss_pred ccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECC-----HHHHHHHHHHHHhhc
Confidence 44455555567888886 55556777888888888765 468776554 466788888888864
No 39
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=27.68 E-value=69 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred CCCcEEEEeCCEEEEEeCC--------------eEEEEEcC--C-----CeEEEEeCCEEEEEe
Q 029116 31 PSNVTITLGGQDLKVKGPL--------------GELSLVYP--R-----EVKVDREDSFLRVRK 73 (199)
Q Consensus 31 P~~V~v~i~~~~v~vkGp~--------------G~l~~~~~--~-----~i~i~~~~~~i~i~~ 73 (199)
|++|+|+++++.|+|+|-. |+..+.|. . .+...++++.|.|..
T Consensus 247 ~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~ 310 (314)
T 2bol_A 247 PKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA 310 (314)
T ss_dssp GGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred hHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence 4788899999999998864 44444433 1 244455677776654
No 40
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=27.56 E-value=84 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=16.5
Q ss_pred EEEEeccHHHHHHHHHHhhcc
Q 029116 150 ITVSGYDKSAIGQFAASIRKW 170 (199)
Q Consensus 150 Iil~GiDke~Vgq~AA~Ir~~ 170 (199)
+.|.| |.+.+......|+.+
T Consensus 63 v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 63 LRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEe-CHHHHHHHHHHHHHH
Confidence 89999 999998877777653
No 41
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=26.02 E-value=23 Score=25.40 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHhhccCC
Q 029116 156 DKSAIGQFAASIRKWRP 172 (199)
Q Consensus 156 Dke~Vgq~AA~Ir~~r~ 172 (199)
+.+.+.||||.||+||-
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 57889999999999986
No 42
>4gb3_3 Coat protein 3; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 1cov_3* 1jew_3 1oop_C* 1mqt_C* 1ev1_3* 1h8t_C* 1upn_C 2c8i_C 1d4m_3* 2x5i_C* 3iyp_B*
Probab=23.54 E-value=69 Score=26.25 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhcccccccceEEEEEEEeeee---EEE--Ee--C-------------CeEEEEcceeeeEEEECCC
Q 029116 82 QMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY---RAA--LE--G-------------QVLVLSLGFSHPVRMTIPD 138 (199)
Q Consensus 82 a~~gT~~sli~Nmi~GVt~Gf~~~L~lvGvGy---rv~--~~--~-------------~~L~l~LG~Sh~i~~~IP~ 138 (199)
.+..|+-+++.+|..+=+=+.++++.++|.+| |+. .. | -.+++.+|...++.+.||-
T Consensus 94 ~~~~T~L~~ls~~f~~WrGSi~~~f~~~gs~~~~GKlliay~PPG~~~p~t~~~a~~~~hvi~D~g~~ss~~f~VP~ 170 (238)
T 4gb3_3 94 VFSRTLLGEILNYYTHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTKRVDAMLGTHVVWDVGLQSSCVLCIPW 170 (238)
T ss_dssp TTTTSHHHHHHTTEEEEESCEEEEEEECSCTTCCCEEEEEEECSSSCCCCSHHHHTTSEEEEEECSSSCEEEEEECC
T ss_pred cccccHHHHHHHHHhhccccEEEEEEEecCCccceEEEEEEECCCCCCCCChHHHhcCeEEEEEcCCCCcEEEEecC
Confidence 46678999999999999999999999999999 432 22 1 1477889988888888883
No 43
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=23.13 E-value=49 Score=20.94 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=15.8
Q ss_pred CCcEEEEeCCEEEEEeCC
Q 029116 32 SNVTITLGGQDLKVKGPL 49 (199)
Q Consensus 32 ~~V~v~i~~~~v~vkGp~ 49 (199)
.++.|+-++.+++|+|.+
T Consensus 33 ndinvtwdgdtvtvegql 50 (62)
T 2gjh_A 33 NDINVTWDGDTVTVEGQL 50 (62)
T ss_dssp CSCEEEECSSCEEEEEEC
T ss_pred ccceeEEcCCEEEEEeEE
Confidence 578899999999999976
No 44
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.23 E-value=54 Score=22.76 Aligned_cols=22 Identities=32% Similarity=0.755 Sum_probs=16.1
Q ss_pred CCcEEEEeCCEEEEEeCC--eEEE
Q 029116 32 SNVTITLGGQDLKVKGPL--GELS 53 (199)
Q Consensus 32 ~~V~v~i~~~~v~vkGp~--G~l~ 53 (199)
.++.|++++.+++|+|.+ |+|.
T Consensus 77 ndinvtfdgdtvtvegqleggsle 100 (106)
T 1qys_A 77 NDINVTFDGDTVTVEGQLEGGSLE 100 (106)
T ss_dssp CEEEEEEETTEEEEEEEC------
T ss_pred cceeEEEcCCeEEEEeEEcCCccc
Confidence 568899999999999987 4443
No 45
>1m11_3 Coat protein VP3; decay-accelerating factor, SCR, icosahedral virus, virus/receptor complex; 16.00A {Human echovirus 7} SCOP: i.6.1.1
Probab=21.58 E-value=1.2e+02 Score=24.72 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcccccccceEEEEEEEeeee---EE--EEe--C-------------CeEEEEcceeeeEEEECCC
Q 029116 83 MHGLFRTLTDNMVVGVSKGFEKKLQMVGVGY---RA--ALE--G-------------QVLVLSLGFSHPVRMTIPD 138 (199)
Q Consensus 83 ~~gT~~sli~Nmi~GVt~Gf~~~L~lvGvGy---rv--~~~--~-------------~~L~l~LG~Sh~i~~~IP~ 138 (199)
+.+|+-+++.+|..+-+=+.++++.++|..| |+ ... | -.+++.+|....+.+.||-
T Consensus 95 ~~~T~L~~ls~~f~~WrGsl~~~f~~~gs~~~~Gklliay~Ppg~~~p~t~~~a~~~~hvi~D~g~~ss~tf~VPy 170 (238)
T 1m11_3 95 FKRTLMGEILNYYAHWSGSIKLTFTFCGSAMATGKLLLAYSPPGADVPATRKQAMLGTHMIWDIGLQSSCVLCIPW 170 (238)
T ss_pred ccccHHHHHHHhhhheeeeEEEEEEEecCCCCcEEEEEEEECCCCCCCCChhhhhcCeEEEEecCCCCcEEEEeec
Confidence 5678999999999999999999999999999 42 221 1 1366778888888888873
No 46
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=21.08 E-value=1e+02 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=19.4
Q ss_pred eeeEEEECCCCeEEEEccCCeEEEE
Q 029116 129 SHPVRMTIPDGIKVNVEENTRITVS 153 (199)
Q Consensus 129 Sh~i~~~IP~~Vkv~~~~~t~Iil~ 153 (199)
+-++.+.+|+|+++.--.|+.|.+.
T Consensus 58 ~~~V~v~~P~G~~lv~vsP~~V~~~ 82 (90)
T 3lyw_A 58 DYEVKVEPIPNIKIVEISPRVVTLQ 82 (90)
T ss_dssp EEECEECCCTTEEEEEEESSEEEEE
T ss_pred eEEEEEECCCCCEEEEEccceEEEE
Confidence 4477899999999977777776653
Done!