Query 029117
Match_columns 198
No_of_seqs 163 out of 510
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 97.8 1.1E-05 3.6E-10 58.4 2.8 77 2-78 4-92 (101)
2 2ffw_A Midline-1; B-BOX, ring 86.3 0.38 1.3E-05 34.0 2.3 40 3-42 32-75 (78)
3 1fre_A Nuclear factor XNF7; zi 85.6 0.46 1.6E-05 29.1 2.2 30 3-32 5-35 (42)
4 2did_A Tripartite motif protei 85.0 0.78 2.7E-05 29.5 3.2 39 3-47 10-49 (53)
5 2yrg_A Tripartite motif-contai 84.4 0.77 2.6E-05 30.6 3.0 39 3-47 16-55 (59)
6 2egm_A Tripartite motif-contai 80.1 0.65 2.2E-05 30.8 1.3 30 3-32 20-50 (57)
7 3ddt_A E3 ubiquitin-protein li 79.9 1.3 4.4E-05 27.9 2.7 31 3-33 8-40 (48)
8 2yvr_A Transcription intermedi 73.3 2.4 8.2E-05 26.7 2.6 38 3-46 8-46 (50)
9 2jun_A Midline-1; B-BOX, TRIM, 73.0 2.3 7.9E-05 30.0 2.7 30 3-32 61-92 (101)
10 2d8u_A Ubiquitin ligase TRIM63 72.5 3.7 0.00013 26.9 3.5 44 2-51 9-54 (64)
11 4hc9_A Trans-acting T-cell-spe 70.5 2.4 8.2E-05 32.5 2.4 69 2-74 6-88 (115)
12 2csv_A Tripartite motif protei 70.5 2.7 9.2E-05 28.5 2.5 42 3-50 20-61 (72)
13 2dja_A Midline-2; tripartite m 69.0 3.7 0.00013 28.3 3.0 43 3-51 20-64 (84)
14 2d8v_A Zinc finger FYVE domain 48.7 13 0.00044 26.7 2.9 44 2-46 9-53 (67)
15 1f62_A Transcription factor WS 46.2 18 0.0006 22.9 3.0 45 3-51 2-49 (51)
16 2ffw_A Midline-1; B-BOX, ring 41.6 7.1 0.00024 27.3 0.6 36 43-78 30-65 (78)
17 2yqq_A Zinc finger HIT domain- 39.7 17 0.00058 24.9 2.2 26 1-26 12-38 (56)
18 2d8v_A Zinc finger FYVE domain 39.0 19 0.00065 25.8 2.5 31 43-77 8-39 (67)
19 2lri_C Autoimmune regulator; Z 38.1 20 0.00067 24.6 2.4 42 3-51 14-58 (66)
20 1nvp_C Transcription initiatio 37.6 10 0.00034 27.7 0.9 9 116-124 28-36 (76)
21 1z60_A TFIIH basal transcripti 36.8 13 0.00045 25.6 1.3 31 3-33 17-51 (59)
22 2e6s_A E3 ubiquitin-protein li 31.0 29 0.00098 24.5 2.4 39 2-51 11-49 (77)
23 2csz_A Synaptotagmin-like prot 30.5 16 0.00054 26.6 0.9 42 2-52 26-73 (76)
24 1zbd_B Rabphilin-3A; G protein 29.6 26 0.00087 27.3 2.1 45 2-51 56-106 (134)
25 2zet_C Melanophilin; complex, 29.3 25 0.00084 28.0 1.9 42 2-51 69-116 (153)
26 1weo_A Cellulose synthase, cat 28.2 42 0.0014 25.4 2.9 36 38-73 11-50 (93)
27 1v6g_A Actin binding LIM prote 27.2 22 0.00074 23.8 1.1 63 12-78 3-75 (81)
28 1mm2_A MI2-beta; PHD, zinc fin 26.1 74 0.0025 21.0 3.6 23 3-32 11-33 (61)
29 2yql_A PHD finger protein 21A; 25.5 39 0.0013 21.9 2.1 23 3-32 11-33 (56)
30 2e6r_A Jumonji/ARID domain-con 24.0 44 0.0015 24.0 2.3 26 3-32 18-43 (92)
31 2yt5_A Metal-response element- 23.9 34 0.0012 22.5 1.6 27 3-32 8-35 (66)
32 2ctu_A Zinc finger protein 483 23.8 46 0.0016 20.2 2.1 24 18-42 37-60 (73)
33 2egq_A FHL1 protein; LIM domai 22.8 20 0.00069 23.6 0.3 58 13-73 4-74 (77)
34 3shb_A E3 ubiquitin-protein li 22.8 47 0.0016 23.4 2.2 38 3-51 12-49 (77)
35 2lvu_A Zinc finger and BTB dom 28.3 18 0.00062 17.9 0.0 22 21-43 3-24 (26)
36 2co8_A NEDD9 interacting prote 22.1 64 0.0022 21.8 2.8 58 17-77 12-76 (82)
37 2lvr_A Zinc finger and BTB dom 27.1 20 0.00067 18.0 0.0 23 21-44 4-26 (30)
38 2ehe_A Four and A half LIM dom 20.5 55 0.0019 21.7 2.1 62 13-76 4-74 (82)
39 3asl_A E3 ubiquitin-protein li 20.5 51 0.0017 22.6 2.0 22 3-27 4-25 (70)
40 1x63_A Skeletal muscle LIM-pro 20.1 27 0.00094 23.2 0.5 59 13-74 4-72 (82)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.79 E-value=1.1e-05 Score=58.44 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=59.4
Q ss_pred CCCCCCC----CCceEEeccCccccCchhccccccCCccCCCccee-eec------ccccCCCCCcCCCCCCCCccccCc
Q 029117 2 KKCELCG----SPAKMFCESDQASLCWDCDAKVHGANFLVANHSRT-LLC------HVCQSLTPWNGSGPKLGPTISVCN 70 (198)
Q Consensus 2 ~~Cd~C~----apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~Rv-pLC------~~C~s~~A~~~sG~C~~d~asLC~ 70 (198)
..|.+|. .+|+++|....+.||..|...+|..++.+++|..+ ++- ..|..++.....-.|..+...+|.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~ 83 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA 83 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence 3699997 37999999999999999999999888888899876 332 246655321112249999999999
Q ss_pred cccc-CCCC
Q 029117 71 VCVG-NGSG 78 (198)
Q Consensus 71 sCd~-~~h~ 78 (198)
.|.. ..|.
T Consensus 84 ~C~~~~~H~ 92 (101)
T 2jun_A 84 LCKLVGRHR 92 (101)
T ss_dssp HHHHHTTTS
T ss_pred hcCCCCCcC
Confidence 9986 6775
No 2
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=86.34 E-value=0.38 Score=34.03 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=33.9
Q ss_pred CCCCCC----CCceEEeccCccccCchhccccccCCccCCCcce
Q 029117 3 KCELCG----SPAKMFCESDQASLCWDCDAKVHGANFLVANHSR 42 (198)
Q Consensus 3 ~Cd~C~----apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~R 42 (198)
.|++|. .+|+..|....+.||..|=...|...+.+++|.=
T Consensus 32 ~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 32 LCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp BCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred cCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 799996 3689999999999999998877977777788863
No 3
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=85.57 E-value=0.46 Score=29.11 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=23.6
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-cccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHG 32 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHs 32 (198)
+|..-+.+-.|||..|.+.+|..|-. .-|.
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCCC
Confidence 45555567789999999999999976 4553
No 4
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=85.00 E-value=0.78 Score=29.47 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=29.0
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-ccccCCccCCCcceeeecc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCH 47 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~ 47 (198)
+|..-+.+-.|||..|...+|..|-. .-| +.|..++|-.
T Consensus 10 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 49 (53)
T 2did_A 10 LCPQHHEALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG 49 (53)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred cChhhCCeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence 45555567789999999999999986 556 3466666654
No 5
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.36 E-value=0.77 Score=30.56 Aligned_cols=39 Identities=26% Similarity=0.672 Sum_probs=28.7
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-ccccCCccCCCcceeeecc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCH 47 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~ 47 (198)
+|..-+.+-.|||..|...+|..|-. .-|. .|..++|-.
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~e 55 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSG 55 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCS
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHH
Confidence 45555567789999999999999976 4553 366666543
No 6
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.06 E-value=0.65 Score=30.82 Aligned_cols=30 Identities=30% Similarity=0.722 Sum_probs=23.6
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-cccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHG 32 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHs 32 (198)
+|..-+.+-.|||..|.+.+|..|-. .-|.
T Consensus 20 ~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 20 ICPKHQEALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp BCTTTCCBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cChhhCceeeEEcCCCCcEEecccCCCCCCC
Confidence 45555567889999999999999976 4553
No 7
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=79.86 E-value=1.3 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCCCCC-CCceEEeccCccccCchhc-cccccC
Q 029117 3 KCELCG-SPAKMFCESDQASLCWDCD-AKVHGA 33 (198)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CD-a~VHsA 33 (198)
+|..=. .+-.|||..|...+|..|- ..-|..
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 344444 4578999999999999996 445643
No 8
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=73.29 E-value=2.4 Score=26.71 Aligned_cols=38 Identities=32% Similarity=0.680 Sum_probs=28.6
Q ss_pred CCCCC-CCCceEEeccCccccCchhccccccCCccCCCcceeeec
Q 029117 3 KCELC-GSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLC 46 (198)
Q Consensus 3 ~Cd~C-~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC 46 (198)
.|..- +.+-.|||..|...+|..|-..-|. .|.-++|-
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred cCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 56666 3677899999999999999775553 46666654
No 9
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=73.01 E-value=2.3 Score=30.02 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=25.2
Q ss_pred CCCCCC-CCceEEeccCccccCchhcc-cccc
Q 029117 3 KCELCG-SPAKMFCESDQASLCWDCDA-KVHG 32 (198)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHs 32 (198)
.|.... .+..+||..|...+|..|.. .-|.
T Consensus 61 ~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~ 92 (101)
T 2jun_A 61 MCLEHEDEKVNMYCVTDDQLICALCKLVGRHR 92 (101)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHHTTTS
T ss_pred cCcCcCCCcceEECCCCCCccchhcCCCCCcC
Confidence 577775 77899999999999999986 5664
No 10
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=72.50 E-value=3.7 Score=26.85 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCCCCC-CCCceEEeccCccccCchhcc-ccccCCccCCCcceeeecccccC
Q 029117 2 KKCELC-GSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 2 ~~Cd~C-~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~s 51 (198)
..|..- +.+-.|||..|...+|..|-. .-|. .|.-++|-.+.+.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 357677 367889999999999999975 4663 4777777766554
No 11
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=70.48 E-value=2.4 Score=32.48 Aligned_cols=69 Identities=28% Similarity=0.568 Sum_probs=41.9
Q ss_pred CCCCCCC-CCceEEeccC-ccccCchhc--cccccCCccCCCcce--------eeecccccC-C-CCCcCCCCCCCCccc
Q 029117 2 KKCELCG-SPAKMFCESD-QASLCWDCD--AKVHGANFLVANHSR--------TLLCHVCQS-L-TPWNGSGPKLGPTIS 67 (198)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD-~A~LC~~CD--a~VHsAN~La~rH~R--------vpLC~~C~s-~-~A~~~sG~C~~d~as 67 (198)
+.|..|+ ....+|=+.+ ...||..|. .+.|..|..+.+..+ ...|..|.. . |.|.- ......
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr----~~~g~~ 81 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRR----NANGDP 81 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEE----CTTSCE
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEE----CCCCCC
Confidence 5799999 3333333344 347999999 566776664432221 235888985 3 34552 234468
Q ss_pred cCccccc
Q 029117 68 VCNVCVG 74 (198)
Q Consensus 68 LC~sCd~ 74 (198)
||..|-.
T Consensus 82 lCNaCgl 88 (115)
T 4hc9_A 82 VCNACGL 88 (115)
T ss_dssp ECHHHHH
T ss_pred cchHHHH
Confidence 9999943
No 12
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=70.47 E-value=2.7 Score=28.49 Aligned_cols=42 Identities=31% Similarity=0.687 Sum_probs=30.9
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccCCccCCCcceeeeccccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQ 50 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~ 50 (198)
.|..-+.+-.+||..|...+|..|-..-|. .|.-++|-...+
T Consensus 20 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~~ 61 (72)
T 2csv_A 20 KCPVHGKTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAKA 61 (72)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHHH
T ss_pred cCcccCCceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHHH
Confidence 455555677899999999999999765553 477777765544
No 13
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=69.01 E-value=3.7 Score=28.26 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCCCC-CCceEEeccCccccCchhcc-ccccCCccCCCcceeeecccccC
Q 029117 3 KCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~s 51 (198)
.|..-. .+-.+||..|...+|..|-. .-|. .|.-++|-.+.+.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~ 64 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK 64 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHH
Confidence 566664 67889999999999999987 5563 4776777665543
No 14
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=48.66 E-value=13 Score=26.66 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=36.9
Q ss_pred CCCCCCCCCceEEeccC-ccccCchhccccccCCccCCCcceeeec
Q 029117 2 KKCELCGSPAKMFCESD-QASLCWDCDAKVHGANFLVANHSRTLLC 46 (198)
Q Consensus 2 ~~Cd~C~apA~vyC~aD-~A~LC~~CDa~VHsAN~La~rH~RvpLC 46 (198)
+.|-+|..-|+|.|... .-..|..|=+..|. .+-.+.|+.++.-
T Consensus 9 pWC~ICneDAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 9 PWCCICNEDATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYH 53 (67)
T ss_dssp SSCTTTCSCCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCC
T ss_pred CeeEEeCCCCeEEecCCCCceehHHHHHHHcc-chhhhccceeecc
Confidence 57999997799999988 56789999999994 5667889988863
No 15
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.23 E-value=18 Score=22.89 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=24.3
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccC--C-ccCCCcceeeecccccC
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGA--N-FLVANHSRTLLCHVCQS 51 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsA--N-~La~rH~RvpLC~~C~s 51 (198)
.|.+|+... ..+...+|..|+...|.. + +|...=...|+|..|..
T Consensus 2 ~C~vC~~~~----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887322 134567788898888842 2 22222223455555543
No 16
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=41.64 E-value=7.1 Score=27.32 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=25.7
Q ss_pred eeecccccCCCCCcCCCCCCCCccccCcccccCCCC
Q 029117 43 TLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNGSG 78 (198)
Q Consensus 43 vpLC~~C~s~~A~~~sG~C~~d~asLC~sCd~~~h~ 78 (198)
..+|+.|...++..+...|+.+.++||..|....|.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcC
Confidence 367999985322223346999999999999886564
No 17
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.66 E-value=17 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.550 Sum_probs=22.4
Q ss_pred CCCCCCCCCCceEEeccCccccCc-hh
Q 029117 1 MKKCELCGSPAKMFCESDQASLCW-DC 26 (198)
Q Consensus 1 m~~Cd~C~apA~vyC~aD~A~LC~-~C 26 (198)
|.+|.+|+.++.+-|....+..|. .|
T Consensus 12 ~~~C~vC~~~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCCCTTTCSCCSEECTTTCCEESSHHH
T ss_pred CCccCcCcCCCeeeCCCCCCCeeCHHH
Confidence 457999999999999999999887 66
No 18
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.99 E-value=19 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=20.3
Q ss_pred eeecccccCCCCCcCCCCCCCC-ccccCcccccCCC
Q 029117 43 TLLCHVCQSLTPWNGSGPKLGP-TISVCNVCVGNGS 77 (198)
Q Consensus 43 vpLC~~C~s~~A~~~sG~C~~d-~asLC~sCd~~~h 77 (198)
.|-|-+|..-+.+. |+++ .-..|..|-...|
T Consensus 8 ~pWC~ICneDAtlr----C~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDATLR----CAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCCEE----ETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCeEE----ecCCCCceehHHHHHHHc
Confidence 45677777654333 6654 5678888877777
No 19
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=38.08 E-value=20 Score=24.64 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc--CC-ccCCCcceeeecccccC
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG--AN-FLVANHSRTLLCHVCQS 51 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs--AN-~La~rH~RvpLC~~C~s 51 (198)
.|.+|+.. +...+|..|++..|. .+ +|...=...|+|..|..
T Consensus 14 ~C~vC~~~-------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGDG-------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSCC-------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCCCC-------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 58888832 235667788888884 22 23333345577877764
No 20
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=37.55 E-value=10 Score=27.73 Aligned_cols=9 Identities=56% Similarity=0.350 Sum_probs=3.8
Q ss_pred CCCCCCcee
Q 029117 116 DEDEENQVV 124 (198)
Q Consensus 116 ~~~~~nqvv 124 (198)
..+.+|-||
T Consensus 28 ~~~~~n~vl 36 (76)
T 1nvp_C 28 LFDTENVVV 36 (76)
T ss_dssp --CCCCEEE
T ss_pred ccCCCcEEE
Confidence 334556554
No 21
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=36.77 E-value=13 Score=25.57 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=24.2
Q ss_pred CCCCCC-C--Cc-eEEeccCccccCchhccccccC
Q 029117 3 KCELCG-S--PA-KMFCESDQASLCWDCDAKVHGA 33 (198)
Q Consensus 3 ~Cd~C~-a--pA-~vyC~aD~A~LC~~CDa~VHsA 33 (198)
.|-.|. . .. ++.|......+|..||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 477888 3 22 4669999999999999999943
No 22
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.03 E-value=29 Score=24.48 Aligned_cols=39 Identities=33% Similarity=0.777 Sum_probs=22.8
Q ss_pred CCCCCCCCCceEEeccCccccCchhccccccCCccCCCcceeeecccccC
Q 029117 2 KKCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 2 ~~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (198)
+.|..|.....++|... .|..|...-+ -..+++|+.|..
T Consensus 11 ~~c~~C~~~~~w~C~~c---~C~vC~~~~~--------~~~ll~CD~C~~ 49 (77)
T 2e6s_A 11 TECDLCGGDPEKKCHSC---SCRVCGGKHE--------PNMQLLCDECNV 49 (77)
T ss_dssp CCCTTTCSCSSSCCSSS---SCSSSCCCCC--------STTEEECSSSCC
T ss_pred ccChhhcCCCCeECCCC---CCcCcCCcCC--------CCCEEEcCCCCc
Confidence 46777774446777554 5666654322 134566777753
No 23
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.50 E-value=16 Score=26.57 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=23.8
Q ss_pred CCCCCCC-CCc-----eEEeccCccccCchhccccccCCccCCCcceeeecccccCC
Q 029117 2 KKCELCG-SPA-----KMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQSL 52 (198)
Q Consensus 2 ~~Cd~C~-apA-----~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s~ 52 (198)
+.|-.|+ .-. ...|.......|..|.... .+ ..|+|-+|...
T Consensus 26 r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--------~~-~~W~C~VC~k~ 73 (76)
T 2csz_A 26 RTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--------SN-GTWRCKVCSGP 73 (76)
T ss_dssp CBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--------ST-TCEEEHHHHSS
T ss_pred cchhhhCccccccccCCCcCcccChhhcccccccC--------CC-CCEEEeeCchh
Confidence 4677777 322 3345555555565554432 12 57888887653
No 24
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.65 E-value=26 Score=27.26 Aligned_cols=45 Identities=27% Similarity=0.746 Sum_probs=35.3
Q ss_pred CCCCCCC-CC-----ceEEeccCccccCchhccccccCCccCCCcceeeecccccC
Q 029117 2 KKCELCG-SP-----AKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 2 ~~Cd~C~-ap-----A~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (198)
..|..|. .- ....|....-..|..|...+.. ++....|+|.+|..
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-----~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-----NRPHPVWLCKICLE 106 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-----SSSSCCEEEHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCC-----CCCccceechhhHH
Confidence 4688898 22 3578999999999999888753 25678899999974
No 25
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.27 E-value=25 Score=27.99 Aligned_cols=42 Identities=19% Similarity=0.485 Sum_probs=32.1
Q ss_pred CCCCCCCC------CceEEeccCccccCchhccccccCCccCCCcceeeecccccC
Q 029117 2 KKCELCGS------PAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 2 ~~Cd~C~a------pA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (198)
+.|-.|.. .....|.......|..|...+ +....|+|.+|..
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~--------~~~~~W~C~vC~k 116 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH--------PEEQGWLCDPCHL 116 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC--------SSSSSCEEHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccccccc--------CCCCcEeeHHHHH
Confidence 36888884 357889999999999998422 2457899999974
No 26
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.25 E-value=42 Score=25.38 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCcceeeecccccCCCCCcC----CCCCCCCccccCcccc
Q 029117 38 ANHSRTLLCHVCQSLTPWNG----SGPKLGPTISVCNVCV 73 (198)
Q Consensus 38 ~rH~RvpLC~~C~s~~A~~~----sG~C~~d~asLC~sCd 73 (198)
.+|.-.++|.+|...-.+.. --+|..++..||..|.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCy 50 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCY 50 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHH
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHH
Confidence 45666788999985321111 1258888888888884
No 27
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.19 E-value=22 Score=23.83 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=38.6
Q ss_pred eEEeccC----ccccCchhccccccCCccC----CCcceeeecccccCCCC--CcCCCCCCCCccccCcccccCCCC
Q 029117 12 KMFCESD----QASLCWDCDAKVHGANFLV----ANHSRTLLCHVCQSLTP--WNGSGPKLGPTISVCNVCVGNGSG 78 (198)
Q Consensus 12 ~vyC~aD----~A~LC~~CDa~VHsAN~La----~rH~RvpLC~~C~s~~A--~~~sG~C~~d~asLC~sCd~~~h~ 78 (198)
.+||..| -+..|..|...|.. ..+. ..|..-..|..|..+-. ..+ -+.....+|..|...+..
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~---~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRV---TFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCE---EEETTEEEEHHHHSCCSS
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEE---EeCCCCEEChhhhcccCC
Confidence 4678887 35689999998873 3322 13655567888876421 111 123344689999877654
No 28
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=26.05 E-value=74 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=15.2
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (198)
.|.+|+. .....+|..|+...|.
T Consensus 11 ~C~vC~~-------~g~ll~Cd~C~~~fH~ 33 (61)
T 1mm2_A 11 FCRVCKD-------GGELLCCDTCPSSYHI 33 (61)
T ss_dssp SCTTTCC-------CSSCBCCSSSCCCBCS
T ss_pred cCCCCCC-------CCCEEEcCCCCHHHcc
Confidence 5677763 1345677788888774
No 29
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.47 E-value=39 Score=21.86 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=14.6
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (198)
.|.+|+.. ....+|..|+...|.
T Consensus 11 ~C~vC~~~-------g~ll~Cd~C~~~~H~ 33 (56)
T 2yql_A 11 FCSVCRKS-------GQLLMCDTCSRVYHL 33 (56)
T ss_dssp SCSSSCCS-------SCCEECSSSSCEECS
T ss_pred CCccCCCC-------CeEEEcCCCCcceEC
Confidence 57777732 245667778777774
No 30
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.98 E-value=44 Score=24.03 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=15.7
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (198)
.|.+|+... ..+...+|..|+...|.
T Consensus 18 ~C~vC~~~~----~~~~ll~CD~C~~~~H~ 43 (92)
T 2e6r_A 18 ICQVCSRGD----EDDKLLFCDGCDDNYHI 43 (92)
T ss_dssp CCSSSCCSG----GGGGCEECTTTCCEECS
T ss_pred CCccCCCcC----CCCCEEEcCCCCchhcc
Confidence 577777321 12345677778877774
No 31
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.93 E-value=34 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.635 Sum_probs=15.9
Q ss_pred CCCCCCCC-ceEEeccCccccCchhcccccc
Q 029117 3 KCELCGSP-AKMFCESDQASLCWDCDAKVHG 32 (198)
Q Consensus 3 ~Cd~C~ap-A~vyC~aD~A~LC~~CDa~VHs 32 (198)
.|.+|+.. .. ......+|..|+...|.
T Consensus 8 ~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~ 35 (66)
T 2yt5_A 8 VCTICQEEYSE---APNEMVICDKCGQGYHQ 35 (66)
T ss_dssp CBSSSCCCCCB---TTBCEEECSSSCCEEET
T ss_pred CCCCCCCCCCC---CCCCEEECCCCChHHHh
Confidence 57777722 10 12345677788888884
No 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.82 E-value=46 Score=20.25 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=11.3
Q ss_pred CccccCchhccccccCCccCCCcce
Q 029117 18 DQASLCWDCDAKVHGANFLVANHSR 42 (198)
Q Consensus 18 D~A~LC~~CDa~VHsAN~La~rH~R 42 (198)
...+.|..|+...-... .+.+|+|
T Consensus 37 ~~~~~C~~C~~~f~~~~-~l~~H~~ 60 (73)
T 2ctu_A 37 RKTPMCEKCRKDSCQEA-ALNKDEG 60 (73)
T ss_dssp SSSCCCHHHHHTCSCCC-SSCCCSS
T ss_pred CCCCCCCCCChhhcCHH-HHHHHHH
Confidence 34455555555544332 2345544
No 33
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.80 E-value=20 Score=23.61 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=33.6
Q ss_pred EEeccCc----cccCchhcccccc----CCccC----CCcceeeecccccCCCC-CcCCCCCCCCccccCcccc
Q 029117 13 MFCESDQ----ASLCWDCDAKVHG----ANFLV----ANHSRTLLCHVCQSLTP-WNGSGPKLGPTISVCNVCV 73 (198)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHs----AN~La----~rH~RvpLC~~C~s~~A-~~~sG~C~~d~asLC~sCd 73 (198)
+||..|- +..|..|...|.. +..+. ..|..-..|..|..+-. ..+ -..+...+|..|.
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f---~~~~~~~yC~~cy 74 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF---VFHQEQVYCPDCA 74 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCC---CEETTEECCHHHH
T ss_pred eEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCcc---EeECCEEEChHHh
Confidence 4666662 5679999999984 22221 23655566777775421 111 1345667777664
No 34
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=22.77 E-value=47 Score=23.43 Aligned_cols=38 Identities=21% Similarity=0.694 Sum_probs=21.1
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccCCccCCCcceeeecccccC
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~s 51 (198)
.|..|+....++|... .|..|...-. -..+++|+.|..
T Consensus 12 ~c~~c~~~~~W~C~~C---~C~vC~~~~d--------~~~ll~CD~C~~ 49 (77)
T 3shb_A 12 SCKHCKDDVNRLCRVC---ACHLCGGRQD--------PDKQLMCDECDM 49 (77)
T ss_dssp SCTTTTTCTTSCCTTT---SBTTTCCCSC--------GGGEEECTTTCC
T ss_pred cccccCCCCCCCCCCC---cCCccCCCCC--------CcceeEeCCCCC
Confidence 4666664455666665 3555543322 235677777764
No 35
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.29 E-value=18 Score=17.90 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=14.1
Q ss_pred ccCchhccccccCCccCCCccee
Q 029117 21 SLCWDCDAKVHGANFLVANHSRT 43 (198)
Q Consensus 21 ~LC~~CDa~VHsAN~La~rH~Rv 43 (198)
+.|..|+...-.... +.+|+|+
T Consensus 3 ~~C~~C~k~f~~~~~-l~~H~~~ 24 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQ-LANHIRH 24 (26)
Confidence 457778877664433 4677764
No 36
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.07 E-value=64 Score=21.80 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=37.4
Q ss_pred cCccccCchhccccccCCccC----CCcceeeecccccCCC-CCcCCCCC--CCCccccCcccccCCC
Q 029117 17 SDQASLCWDCDAKVHGANFLV----ANHSRTLLCHVCQSLT-PWNGSGPK--LGPTISVCNVCVGNGS 77 (198)
Q Consensus 17 aD~A~LC~~CDa~VHsAN~La----~rH~RvpLC~~C~s~~-A~~~sG~C--~~d~asLC~sCd~~~h 77 (198)
.-.+..|..|...|.....|. ..|..-..|..|..+- ...+ + ..+...+|..|.....
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~---~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY---EQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSE---ECCTTTCCCEETTTCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCce---eEeCcCCEEEChHHHHhhh
Confidence 345788999999997554443 2577777888887532 2211 2 2467788888875543
No 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.10 E-value=20 Score=18.01 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=14.8
Q ss_pred ccCchhccccccCCccCCCcceee
Q 029117 21 SLCWDCDAKVHGANFLVANHSRTL 44 (198)
Q Consensus 21 ~LC~~CDa~VHsAN~La~rH~Rvp 44 (198)
+.|..|+...-.... +.+|+|+.
T Consensus 4 ~~C~~C~k~f~~~~~-l~~H~~~h 26 (30)
T 2lvr_A 4 YVCIHCQRQFADPGA-LQRHVRIH 26 (30)
Confidence 567788877664433 56787753
No 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.50 E-value=55 Score=21.74 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=37.5
Q ss_pred EEeccCc----cccCchhccccccCCccC-----CCcceeeecccccCCCCCcCCCCCCCCccccCcccccCC
Q 029117 13 MFCESDQ----ASLCWDCDAKVHGANFLV-----ANHSRTLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNG 76 (198)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La-----~rH~RvpLC~~C~s~~A~~~sG~C~~d~asLC~sCd~~~ 76 (198)
+||..|- +..|..|...|.....++ ..|..-..|..|..+-... ..-..+...+|..|....
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADE--PFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSC--CEEEETTEEEETTTSSCC
T ss_pred eechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCC--ccEeeCCEEECHHHHhhh
Confidence 5677762 457999999998322222 2577667788887642210 011346678888886543
No 39
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.48 E-value=51 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.714 Sum_probs=11.5
Q ss_pred CCCCCCCCceEEeccCccccCchhc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCD 27 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CD 27 (198)
-|..|...-.++|... .|..|.
T Consensus 4 ~c~~c~~~~~w~C~~C---~C~~C~ 25 (70)
T 3asl_A 4 SCKHCKDDVNRLCRVC---ACHLCG 25 (70)
T ss_dssp SCTTTTTCTTSCCTTT---SBTTTC
T ss_pred ccccccCCCCeECCCC---CCcCCC
Confidence 4666664345666544 344443
No 40
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.14 E-value=27 Score=23.21 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=34.9
Q ss_pred EEeccCc----cccCchhccccccCCccCC-----CcceeeecccccCCCC-CcCCCCCCCCccccCccccc
Q 029117 13 MFCESDQ----ASLCWDCDAKVHGANFLVA-----NHSRTLLCHVCQSLTP-WNGSGPKLGPTISVCNVCVG 74 (198)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La~-----rH~RvpLC~~C~s~~A-~~~sG~C~~d~asLC~sCd~ 74 (198)
+||..|- +..|..|...|..+..++. .|..-..|..|..+-. ..+ -..+...+|..|..
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~---~~~~~~~yC~~cy~ 72 (82)
T 1x63_A 4 GSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSF---FPKGEDFYCVTCHE 72 (82)
T ss_dssp CCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCE---EEETTEEEEHHHHH
T ss_pred cCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCcc---EeeCCEEECHHHHH
Confidence 5666662 5689999999985443222 3655566777775321 111 12456677877753
Done!