Query 029117
Match_columns 198
No_of_seqs 163 out of 510
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 12:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029117.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029117hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dida1 g.43.1.1 (A:8-47) Trip 77.3 0.9 6.5E-05 27.2 2.9 29 3-31 3-32 (40)
2 d1frea_ g.43.1.1 (A:) Nuclear 76.0 0.69 5E-05 27.6 2.0 28 4-31 3-31 (39)
3 d2csva1 g.43.1.1 (A:8-66) Trip 70.0 1.4 9.8E-05 28.0 2.5 37 3-45 13-49 (59)
4 d2djaa1 g.43.1.1 (A:8-78) Midl 63.4 2.4 0.00017 27.2 2.7 43 3-51 13-57 (71)
5 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 57.2 2.4 0.00017 26.1 1.7 41 2-48 2-44 (51)
6 d1f62a_ g.50.1.2 (A:) Williams 45.1 6.6 0.00048 23.4 2.4 44 3-50 2-48 (51)
7 d2djaa1 g.43.1.1 (A:8-78) Midl 42.2 5.7 0.00042 25.2 1.8 41 35-78 3-44 (71)
8 d1z60a1 g.49.1.2 (A:328-386) T 30.2 8.3 0.00061 25.3 1.1 31 3-33 17-51 (59)
9 d1y0ja1 g.39.1.1 (A:200-238) E 23.7 16 0.0012 22.0 1.5 27 2-28 3-31 (39)
10 d2fc7a1 g.44.1.6 (A:8-76) Zinc 23.7 54 0.0039 20.9 4.3 28 3-30 16-51 (69)
11 d2d8va1 g.43.1.1 (A:8-61) Zinc 22.9 32 0.0024 22.0 3.0 43 2-45 2-45 (54)
12 d1zbdb_ g.50.1.1 (B:) Effector 21.4 27 0.002 24.3 2.6 44 2-50 49-98 (124)
13 d1fp0a1 g.50.1.2 (A:19-88) Nuc 20.1 58 0.0043 20.3 3.9 12 20-31 19-30 (70)
No 1
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.26 E-value=0.9 Score=27.20 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=22.1
Q ss_pred CCCCCCCCceEEeccCccccCchhcc-ccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDA-KVH 31 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (198)
+|..-+.+-.+||..|+..+|..|-. .-|
T Consensus 3 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 32 (40)
T d2dida1 3 LCPQHHEALSLFCYEDQEAVCLICAISHTH 32 (40)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTT
T ss_pred cchhhCccceEEcccCCcEeeccCcCCCCc
Confidence 34444456789999999999999964 356
No 2
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=75.98 E-value=0.69 Score=27.65 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=21.4
Q ss_pred CCCCCCCceEEeccCccccCchhcc-ccc
Q 029117 4 CELCGSPAKMFCESDQASLCWDCDA-KVH 31 (198)
Q Consensus 4 Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (198)
|..-+.+-.|||..|...+|..|-. .-|
T Consensus 3 C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 31 (39)
T d1frea_ 3 CSEHDERLKLYCKDDGTLSCVICRDSLKH 31 (39)
T ss_dssp CCSSCSSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred CcccCcceeEEcccCCcEeeccCcCCCCc
Confidence 4444467789999999999999954 345
No 3
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.04 E-value=1.4 Score=28.04 Aligned_cols=37 Identities=35% Similarity=0.828 Sum_probs=27.7
Q ss_pred CCCCCCCCceEEeccCccccCchhccccccCCccCCCcceeee
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLL 45 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpL 45 (198)
+|..-+.+-.|||..|...+|..|-..-|. .|.-++|
T Consensus 13 ~C~~H~e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l 49 (59)
T d2csva1 13 KCPVHGKTMELFCQTDQTCICYLCMFQEHK------NHSTVTV 49 (59)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTTS------SSCEEEH
T ss_pred chhhhCCccceECCCCCceECcccCcccCC------CCCeeCH
Confidence 455555677899999999999999766663 3666655
No 4
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.37 E-value=2.4 Score=27.18 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=31.1
Q ss_pred CCCCCC-CCceEEeccCccccCchhcc-ccccCCccCCCcceeeecccccC
Q 029117 3 KCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQS 51 (198)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~s 51 (198)
.|..-. .+..+||..+...+|..|-. ..| +.|.-.+|=.+.+.
T Consensus 13 ~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a~~~ 57 (71)
T d2djaa1 13 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFEK 57 (71)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCCC
T ss_pred cCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHHHHH
Confidence 466664 67899999999999999964 356 24766666555443
No 5
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.19 E-value=2.4 Score=26.12 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCCCCC-CCceEEeccCccccCchhcc-ccccCCccCCCcceeeeccc
Q 029117 2 KKCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHV 48 (198)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~ 48 (198)
+.|..=. .+-.+||..+...+|..|-. ..| +.|.=.+|=.+
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~~a 44 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSV 44 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTC
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHHHH
Confidence 4566665 68899999999999999954 456 23655555433
No 6
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.12 E-value=6.6 Score=23.42 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=25.0
Q ss_pred CCCCCCCCceEEeccCccccCchhcccccc--CCccCCC-cceeeeccccc
Q 029117 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG--ANFLVAN-HSRTLLCHVCQ 50 (198)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs--AN~La~r-H~RvpLC~~C~ 50 (198)
+|.+|+... ..+...+|..|+...|. .++.+.+ =...|+|..|+
T Consensus 2 ~C~vC~~~~----~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~ 48 (51)
T d1f62a_ 2 RCKVCRKKG----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCcCcCCCC----CCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCc
Confidence 577777322 23556778899888884 3332222 12346666665
No 7
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.20 E-value=5.7 Score=25.20 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=27.2
Q ss_pred ccCCCcceeeecccccCCCCCcCCCCCCCCccccCcccccC-CCC
Q 029117 35 FLVANHSRTLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGN-GSG 78 (198)
Q Consensus 35 ~La~rH~RvpLC~~C~s~~A~~~sG~C~~d~asLC~sCd~~-~h~ 78 (198)
|+...+.|...|..-...+..+ .|..+...+|..|... .|.
T Consensus 3 P~~~~~~r~~~C~~H~~e~l~~---fC~~C~~~iC~~C~~~~~Hk 44 (71)
T d2djaa1 3 PVPDTHLRGITCLDHENEKVNM---YCVSDDQLICALCKLVGRHR 44 (71)
T ss_dssp CCCCCCSSCCCCSSCSSSCCCE---EETTTTEEECHHHHHTSTTT
T ss_pred CCCccccCCCcCcccCCcccee---EcCCCCceeccccccCCCCC
Confidence 4555677877776543322222 3999999999999654 565
No 8
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.21 E-value=8.3 Score=25.31 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=24.2
Q ss_pred CCCCCC---C-CceEEeccCccccCchhccccccC
Q 029117 3 KCELCG---S-PAKMFCESDQASLCWDCDAKVHGA 33 (198)
Q Consensus 3 ~Cd~C~---a-pA~vyC~aD~A~LC~~CDa~VHsA 33 (198)
.|-.|+ . ..++.|....-.+|..||.-||..
T Consensus 17 ~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T d1z60a1 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CccCCCCcCCCCceEECcCCCCccccccchhhhhh
Confidence 477787 2 334559999999999999999953
No 9
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.73 E-value=16 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=16.3
Q ss_pred CCCCCCC-C-CceEEeccCccccCchhcc
Q 029117 2 KKCELCG-S-PAKMFCESDQASLCWDCDA 28 (198)
Q Consensus 2 ~~Cd~C~-a-pA~vyC~aD~A~LC~~CDa 28 (198)
+.|..|+ . ...+.=-.+...||-+|..
T Consensus 3 r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl 31 (39)
T d1y0ja1 3 RECVNCGATATPLWRRDRTGHYLCNACGL 31 (39)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECSSHHH
T ss_pred CCCCCCCCCCCcccccCCCCCEeeHHhHH
Confidence 4688888 3 3344433444678888874
No 10
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.69 E-value=54 Score=20.91 Aligned_cols=28 Identities=29% Similarity=0.851 Sum_probs=21.3
Q ss_pred CCCCCC-CC---ceEEeccC----ccccCchhcccc
Q 029117 3 KCELCG-SP---AKMFCESD----QASLCWDCDAKV 30 (198)
Q Consensus 3 ~Cd~C~-ap---A~vyC~aD----~A~LC~~CDa~V 30 (198)
.|+.|+ .| .++.|... .--||..|=...
T Consensus 16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~ 51 (69)
T d2fc7a1 16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 51 (69)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCc
Confidence 699999 54 58889876 578999994433
No 11
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.95 E-value=32 Score=22.03 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=35.4
Q ss_pred CCCCCCCCCceEEeccCc-cccCchhccccccCCccCCCcceeee
Q 029117 2 KKCELCGSPAKMFCESDQ-ASLCWDCDAKVHGANFLVANHSRTLL 45 (198)
Q Consensus 2 ~~Cd~C~apA~vyC~aD~-A~LC~~CDa~VHsAN~La~rH~RvpL 45 (198)
|-|-+|..-|+|-|.... -..|..|=...| -++-.+.|+-++.
T Consensus 2 PWC~ICneDA~lrC~gCdgdLyC~rC~rE~H-dd~e~~~H~~~~y 45 (54)
T d2d8va1 2 PWCCICNEDATLRCAGCDGDLYCARCFREGH-DNFDLKEHQTSPY 45 (54)
T ss_dssp SSCTTTCSCCCEEETTTTSEEECSSHHHHHT-TTSSTTTCCEECC
T ss_pred CEeEEecCCCceEecCCCCceehHHHHHHhc-cccccccceeccc
Confidence 679999999999999875 466999999999 5666788887764
No 12
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.36 E-value=27 Score=24.33 Aligned_cols=44 Identities=27% Similarity=0.782 Sum_probs=29.2
Q ss_pred CCCCCCC-C-----CceEEeccCccccCchhccccccCCccCCCcceeeeccccc
Q 029117 2 KKCELCG-S-----PAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQ 50 (198)
Q Consensus 2 ~~Cd~C~-a-----pA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~ 50 (198)
..|-.|+ . .-..+|+.....+|..|...+... +=..+++|..|.
T Consensus 49 ~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~-----~~~~~w~C~~C~ 98 (124)
T d1zbdb_ 49 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-----RPHPVWLCKICL 98 (124)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-----SSSCCEEEHHHH
T ss_pred CcCcccCCcccCCCCCCCcCccCCcccccCCCCCccCC-----CCCCCEECccCc
Confidence 3588887 2 234679999999999997543311 123568888886
No 13
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.05 E-value=58 Score=20.31 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=7.7
Q ss_pred cccCchhccccc
Q 029117 20 ASLCWDCDAKVH 31 (198)
Q Consensus 20 A~LC~~CDa~VH 31 (198)
..+|..|+...|
T Consensus 19 ll~Cd~C~~~~H 30 (70)
T d1fp0a1 19 LVMCNQCEFCFH 30 (70)
T ss_dssp CEECTTSSCEEC
T ss_pred EEECCCCChhhc
Confidence 455666777776
Done!