BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029119
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54GD9|ARV1_DICDI Protein arv1 homolog OS=Dictyostelium discoideum GN=arv1 PE=3 SV=1
Length = 246
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 5 CVKCGFRIKTLFVQYSP---GNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRH 61
C++CG + ++ ++ GNIRL +C +C AD+Y+E + +I+ +DL LHK QAYRH
Sbjct: 3 CIECGRPVNDVYKEFGKAGSGNIRLTRCASCNQTADKYVEYDFIIVFLDLFLHKAQAYRH 62
Query: 62 LLYNVLNSETVNLKGILWKSTVGFLLLDAYRSLLLSRSNEGQSSSMSFSLLAWIFQKMLK 121
LL+N + K V ++ ++Y L + E S +F + W
Sbjct: 63 LLFNRQPYRDFGIPIQYIKVLVVYIFFESYIKWLRFKEYEQHPSGPAFYYIDW-----QD 117
Query: 122 DVVLGNVMFLGVFLHAS------------RILLNTSAGASSFKDFLLAVLISSYFKIFLV 169
DV F+ V A R + + + ++A+++SS+ K FLV
Sbjct: 118 DVPYDRYWFIFVTAIAEFAVYILSIILSVRFIYESRYPIIKYNYLIMAIILSSFGKGFLV 177
Query: 170 AMMVWNFPSSVIYIIDLFVLSSNTVALK 197
MM+W++P S I+++FVLSSN VA+K
Sbjct: 178 LMMIWDYPFSFGSILNIFVLSSNVVAIK 205
>sp|Q9H2C2|ARV1_HUMAN Protein ARV1 OS=Homo sapiens GN=ARV1 PE=2 SV=1
Length = 271
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 16/203 (7%)
Query: 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRH 61
+YRC++C K L+ Y+ G +++ C++C+ D+YIE + +I+LI+ IL K QAYRH
Sbjct: 31 QYRCIECNQEAKELYRDYNHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKAQAYRH 90
Query: 62 LLYNVLNSETVNLKGILWKSTVGFLLLDAY-RSLLLSRSNEGQS-SSMSFSLLAWIFQKM 119
+L+N +N+ G K + LL +AY R L SN+ + + W F +M
Sbjct: 91 ILFNT----QINIHG---KLCIFCLLCEAYLRWWQLQDSNQNTAPDDLIRYAKEWDFYRM 143
Query: 120 LKDVVLGNVM-FLGV--FLHASRILLNTSAGASSFKDFLLAVLISSYFKIFLVAMMVW-- 174
L F+G+ FL R + T+ +F L A+L+SSY K+ L+ ++W
Sbjct: 144 FAIAALEQTAYFIGIFTFLWVERPM--TAKKKPNFILLLKALLLSSYGKLLLIPAVIWEH 201
Query: 175 NFPSSVIYIIDLFVLSSNTVALK 197
++ S + +I +FVL+SN A++
Sbjct: 202 DYTSVCLKLIKVFVLTSNFQAIR 224
>sp|Q9HDX5|ARV1_SCHPO Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=arv1 PE=3 SV=3
Length = 266
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 116/202 (57%), Gaps = 16/202 (7%)
Query: 4 RCVKCGFRIKTLFVQYSPG--NIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRH 61
+CV+CG + +L+ Y G NIRL +C+NC+ AD+YIE +++++ +D+IL KPQ YRH
Sbjct: 2 KCVECGAEVDSLYTYYGRGTSNIRLAQCKNCKQFADKYIELDVVLISMDVILMKPQVYRH 61
Query: 62 LLYNVLNSETVNLKGILWKSTVGFLLLDAYRSLLLSRSN-EGQSSSMSFSLLAWIF--QK 118
LL+N L++ T +++ V F +L + ++ L S E +++ + A F Q
Sbjct: 62 LLFNSLSART-------FRNVVNFCILISLFNVFLVWSRLEKRAALFPYFTPAQAFLSQP 114
Query: 119 MLKD---VVLGNVMFLGVFLHASRILLNTSAGASSFKDFLLAVLISSYFKIFLVAMMVWN 175
+++ ++L ++ V+ + +LL + G S+ AV++SS ++ V M++W+
Sbjct: 115 IIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLPVFMVIWD 174
Query: 176 FPSSV-IYIIDLFVLSSNTVAL 196
+ S+ +++ VL SN AL
Sbjct: 175 YDLSIAATVVEWVVLFSNVDAL 196
>sp|Q9D0U9|ARV1_MOUSE Protein ARV1 OS=Mus musculus GN=Arv1 PE=2 SV=1
Length = 266
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 12/200 (6%)
Query: 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRHL 62
YRC++C + L+ YS G +++ C++C+ D+YIE + +I+LI+ IL K QAYRH+
Sbjct: 27 YRCIECNREAQELYRDYSHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKTQAYRHI 86
Query: 63 LYNVLNSETVNLKGILWKSTVGFLLLDAY-RSLLLSRSNEGQSSSMSFSLL-AWIFQKML 120
L+N +N+ G L + LL +AY R L S++ + W F +M
Sbjct: 87 LFNT----KINIHGKL---CMFCLLCEAYLRWWQLQDSSQSPAPDDVIRYAKEWDFYRMF 139
Query: 121 KDVVLGNVMFL-GVFLHASRILLNTSAGASSFKDFLLAVLISSYFKIFLVAMMVW--NFP 177
FL G+F T+ A F L A+L+SSY K+ L+ ++W ++
Sbjct: 140 VIASFEQAAFLTGIFAFLWVQQPMTAKRAPDFVLLLKALLLSSYGKLLLIPAVIWEHDYT 199
Query: 178 SSVIYIIDLFVLSSNTVALK 197
+ +I +FVL+SN A++
Sbjct: 200 PLCLRLIKVFVLTSNFQAVR 219
>sp|Q3SZW3|ARV1_BOVIN Protein ARV1 OS=Bos taurus GN=ARV1 PE=2 SV=1
Length = 282
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 16/203 (7%)
Query: 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRH 61
+YRC++C K L+ Y+ G +++ C++C+ D+YIE + +I+LI+ IL K QAYRH
Sbjct: 42 QYRCIECNQEAKELYRDYNHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKAQAYRH 101
Query: 62 LLYNVLNSETVNLKGILWKSTVGFLLLDAYRSLLLSRSNEGQSSSMSFSLLA--WIFQKM 119
+L+N +N+ G K V LL +AY + + F A W F +M
Sbjct: 102 ILFNT----KINMHG---KLCVFCLLCEAYLRWWQLQDSSQSIDPDDFIRYAKEWDFYRM 154
Query: 120 LKDVVLGNVM-FLGV--FLHASRILLNTSAGASSFKDFLLAVLISSYFKIFLVAMMVW-- 174
L F+G+ FL R + + +F L A+L+SSY K+ L+ ++W
Sbjct: 155 FAIASLEQTAYFIGIFAFLWVERPI--RAKEKLNFTLLLKALLLSSYGKLLLIPAVIWEH 212
Query: 175 NFPSSVIYIIDLFVLSSNTVALK 197
++ + +I +FVL+SN A++
Sbjct: 213 DYTPLCLRLIKVFVLTSNFQAIR 235
>sp|Q750Q7|ARV1_ASHGO Protein ARV1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=ARV1 PE=3 SV=1
Length = 299
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 5 CVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRHLLY 64
C+ C +++L+V Y +IRL C C V D Y+E + ++L IDL+L KP AYRHL+Y
Sbjct: 3 CINCCCHVESLYVAYPGDHIRLTDCWQCGEVVDRYVEFDNVLLFIDLLLLKPGAYRHLVY 62
Query: 65 NVLNSE 70
N L +
Sbjct: 63 NSLEVD 68
>sp|Q06541|ARV1_YEAST Protein ARV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ARV1 PE=1 SV=1
Length = 321
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 5 CVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRHLLY 64
C+ C + +L+ YS +I+L C C+ D+Y+E + ++L IDL+L K AYRHL++
Sbjct: 3 CITCMRPVDSLYTVYSNDHIQLTDCPYCQETVDKYVEIDNVLLFIDLLLLKAGAYRHLVF 62
Query: 65 NVL 67
N L
Sbjct: 63 NAL 65
>sp|Q4J947|TRM1_SULAC tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=trm1 PE=3 SV=1
Length = 382
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEY 39
Y C KCG+RI++ ++Q MKC NC V Y
Sbjct: 244 YECPKCGYRIESEYLQ-------QMKCTNCNLVMQTY 273
>sp|P46973|HIT1_YEAST Protein HIT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HIT1 PE=1 SV=1
Length = 164
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIECEIMILLIDLILHKPQAYRH 61
+Y+C KCG R +L + E RA + +E +I+ L + +
Sbjct: 17 KYKCPKCGVRYCSLKCYKDAAKHVHKESEQPRAGTEANVEVVNNDKIINSSLAMNKTLKT 76
Query: 62 LLYNVLNSETVNLKGILWKSTVGFLLLDAYRSLLLSRSNEGQSSSMSFSLLAWIFQKMLK 121
++ + + L+ +L +TV F L YR +L S N+G S M+ L + L
Sbjct: 77 KAFDDIYQNSAELQELLKYNTVKFHLAKVYR-ILSSTVNDGSSGKMNSDLQKELAVNYLN 135
Query: 122 DVVLGNVMFLGVFLHASRILLN 143
+ G + + +ILL+
Sbjct: 136 TLRYGGIHYNEAIEEFCQILLD 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,862,507
Number of Sequences: 539616
Number of extensions: 2244054
Number of successful extensions: 6610
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6592
Number of HSP's gapped (non-prelim): 23
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)