Query 029119
Match_columns 198
No_of_seqs 136 out of 182
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_L ABC10-alpha, DNA-direct 90.0 0.12 4.1E-06 36.1 1.6 27 1-34 27-53 (70)
2 3h0g_L DNA-directed RNA polyme 87.0 0.3 1E-05 33.5 2.0 27 1-34 20-46 (63)
3 2kae_A GATA-type transcription 78.6 0.54 1.8E-05 32.9 0.6 33 2-38 8-42 (71)
4 4bbr_M Transcription initiatio 78.4 0.82 2.8E-05 40.3 1.8 37 2-41 21-58 (345)
5 3k7a_M Transcription initiatio 78.0 1 3.4E-05 39.5 2.3 33 2-37 21-53 (345)
6 2e2z_A TIM15; protein import, 77.3 0.78 2.7E-05 34.2 1.2 32 2-34 13-46 (100)
7 2fiy_A Protein FDHE homolog; F 76.6 1.6 5.4E-05 38.2 3.1 63 3-66 223-302 (309)
8 3k1f_M Transcription initiatio 72.9 1.8 6.2E-05 35.6 2.4 38 3-43 22-60 (197)
9 1d4u_A Nucleotide excision rep 70.3 1.5 5.1E-05 33.1 1.2 31 2-35 5-35 (111)
10 4ayb_P DNA-directed RNA polyme 70.2 1.9 6.6E-05 28.0 1.6 28 2-33 3-30 (48)
11 1gnf_A Transcription factor GA 70.1 1.5 5.1E-05 28.1 1.0 31 1-34 3-33 (46)
12 3j21_g 50S ribosomal protein L 66.3 1.4 4.6E-05 29.0 0.2 24 2-35 14-37 (51)
13 2jrp_A Putative cytoplasmic pr 64.8 4.1 0.00014 29.2 2.5 38 1-38 1-43 (81)
14 1dl6_A Transcription factor II 64.4 3.9 0.00013 27.0 2.2 30 3-37 12-41 (58)
15 2gmg_A Hypothetical protein PF 60.9 3.4 0.00012 31.0 1.6 26 2-34 67-92 (105)
16 1gh9_A 8.3 kDa protein (gene M 60.8 2.2 7.6E-05 29.7 0.5 25 3-35 5-29 (71)
17 2kdx_A HYPA, hydrogenase/ureas 60.4 2.1 7E-05 31.9 0.3 27 2-36 73-100 (119)
18 1k81_A EIF-2-beta, probable tr 57.9 4 0.00014 24.6 1.3 29 4-35 2-30 (36)
19 2apo_B Ribosome biogenesis pro 54.8 5.5 0.00019 26.9 1.7 19 28-46 20-49 (60)
20 1pft_A TFIIB, PFTFIIBN; N-term 54.3 7.1 0.00024 24.5 2.1 31 2-37 5-35 (50)
21 2vut_I AREA, nitrogen regulato 53.6 3.3 0.00011 26.1 0.3 29 3-34 2-30 (43)
22 3dfx_A Trans-acting T-cell-spe 53.4 3.1 0.00011 28.3 0.2 30 2-34 7-36 (63)
23 4gat_A Nitrogen regulatory pro 53.0 3.9 0.00013 28.0 0.7 30 2-34 9-38 (66)
24 2i5o_A DNA polymerase ETA; zin 50.2 8.2 0.00028 23.8 1.8 26 26-51 9-36 (39)
25 2aus_D NOP10, ribosome biogene 46.7 8.4 0.00029 26.0 1.5 19 28-46 19-48 (60)
26 6rxn_A Rubredoxin; electron tr 45.2 10 0.00035 24.1 1.7 37 2-40 4-44 (46)
27 2e9h_A EIF-5, eukaryotic trans 41.9 17 0.00059 28.8 3.0 31 4-35 105-135 (157)
28 1j2o_A FLIN2, fusion of rhombo 41.4 24 0.00082 25.3 3.5 44 2-45 3-53 (114)
29 2jne_A Hypothetical protein YF 41.3 14 0.00049 27.3 2.2 37 1-37 31-72 (101)
30 1ltl_A DNA replication initiat 41.3 8.8 0.0003 32.4 1.2 32 2-35 134-165 (279)
31 2cor_A Pinch protein; LIM doma 38.3 13 0.00044 25.1 1.5 43 2-44 15-60 (79)
32 2x5r_A Hypothetical protein OR 38.1 23 0.00077 26.3 2.9 32 2-33 77-113 (127)
33 3a43_A HYPD, hydrogenase nicke 38.1 8.1 0.00028 29.7 0.5 11 3-13 71-81 (139)
34 3j20_Y 30S ribosomal protein S 36.7 9.7 0.00033 24.5 0.6 9 4-12 21-29 (50)
35 2g2k_A EIF-5, eukaryotic trans 35.0 23 0.00079 28.4 2.7 31 4-35 98-128 (170)
36 3o9x_A Uncharacterized HTH-typ 34.7 21 0.00071 26.0 2.3 33 3-35 3-45 (133)
37 1vq8_Z 50S ribosomal protein L 33.3 21 0.00071 25.3 1.9 28 2-35 27-54 (83)
38 4hc9_A Trans-acting T-cell-spe 32.9 11 0.00038 28.2 0.5 30 2-34 5-34 (115)
39 2kwq_A Protein MCM10 homolog; 31.4 16 0.00054 26.6 1.1 27 3-36 49-75 (92)
40 3u4z_A Telomerase-associated p 30.6 23 0.00078 25.6 1.8 19 18-36 25-44 (109)
41 1s24_A Rubredoxin 2; electron 30.3 17 0.00058 26.2 1.1 16 28-43 70-85 (87)
42 1ffk_W Ribosomal protein L37AE 29.3 26 0.0009 24.4 1.9 27 2-35 27-54 (73)
43 3jyw_9 60S ribosomal protein L 29.2 23 0.00077 24.7 1.5 27 2-35 26-53 (72)
44 4ayb_N DNA-directed RNA polyme 28.9 15 0.0005 25.3 0.5 17 28-44 6-23 (66)
45 3irb_A Uncharacterized protein 28.7 18 0.00063 27.7 1.1 30 3-42 48-77 (145)
46 1twf_J DNA-directed RNA polyme 28.4 11 0.00036 26.3 -0.3 18 3-20 5-22 (70)
47 1ef4_A Subunit N, DNA-directed 28.2 7.6 0.00026 25.8 -1.0 17 4-20 5-21 (55)
48 1nyp_A Pinch protein; LIM doma 27.5 22 0.00075 22.6 1.2 42 2-44 5-51 (66)
49 2v3b_B Rubredoxin 2, rubredoxi 26.9 19 0.00064 23.6 0.7 16 28-43 38-53 (55)
50 3u50_C Telomerase-associated p 25.7 16 0.00055 29.2 0.2 26 3-35 43-68 (172)
51 2ayj_A 50S ribosomal protein L 25.6 19 0.00065 24.0 0.6 23 2-34 19-41 (56)
52 2zjr_Z 50S ribosomal protein L 25.3 17 0.00058 24.3 0.3 8 27-34 44-51 (60)
53 1m3v_A FLIN4, fusion of the LI 25.1 42 0.0014 24.3 2.5 43 2-44 5-54 (122)
54 2dj7_A Actin-binding LIM prote 25.0 46 0.0016 22.3 2.5 43 2-44 15-61 (80)
55 1dx8_A Rubredoxin; electron tr 25.0 32 0.0011 23.6 1.6 15 28-42 42-56 (70)
56 1g47_A Pinch protein; LIM doma 24.8 28 0.00095 22.7 1.3 42 2-44 11-59 (77)
57 2kn9_A Rubredoxin; metalloprot 24.5 22 0.00076 25.2 0.8 16 28-43 62-77 (81)
58 1yk4_A Rubredoxin, RD; electro 24.4 27 0.00093 22.5 1.1 15 28-42 37-51 (52)
59 1x64_A Alpha-actinin-2 associa 24.3 34 0.0012 23.2 1.7 42 2-44 25-71 (89)
60 1x3z_A Peptide: N-glycanase; h 23.9 35 0.0012 30.2 2.1 36 2-37 119-166 (335)
61 4rxn_A Rubredoxin; electron tr 23.6 41 0.0014 21.9 1.9 16 28-43 38-53 (54)
62 3i9v_9 NADH-quinone oxidoreduc 23.6 32 0.0011 25.9 1.6 16 3-18 51-71 (182)
63 7fd1_A FD1, protein (7-Fe ferr 22.7 32 0.0011 24.0 1.4 35 2-36 5-46 (106)
64 2d8q_A BLU protein, zinc finge 22.5 35 0.0012 23.0 1.4 21 2-35 15-35 (70)
65 1wig_A KIAA1808 protein; LIM d 22.4 31 0.0011 22.7 1.2 42 2-43 5-51 (73)
66 2dar_A PDZ and LIM domain prot 22.3 39 0.0013 23.0 1.7 41 2-43 25-70 (90)
67 2cur_A Skeletal muscle LIM-pro 22.3 29 0.00099 22.2 1.0 41 2-43 5-50 (69)
68 3iz5_m 60S ribosomal protein L 22.3 30 0.001 25.2 1.1 28 2-35 36-63 (92)
69 1ryq_A DNA-directed RNA polyme 22.0 22 0.00076 24.5 0.4 22 2-35 11-32 (69)
70 1qyp_A RNA polymerase II; tran 21.6 54 0.0018 20.9 2.2 31 4-35 17-52 (57)
71 3glr_A NAD-dependent deacetyla 21.6 13 0.00044 31.9 -1.1 31 3-35 140-172 (285)
72 1nkw_Y 50S ribosomal protein L 21.4 45 0.0015 23.1 1.9 12 22-33 29-40 (73)
73 1yc5_A NAD-dependent deacetyla 21.3 16 0.00055 30.2 -0.6 9 26-34 145-153 (246)
74 3ga8_A HTH-type transcriptiona 21.2 50 0.0017 22.3 2.1 33 2-34 2-44 (78)
75 3izc_m 60S ribosomal protein R 21.1 30 0.001 25.2 0.9 27 2-35 36-63 (92)
76 1x62_A C-terminal LIM domain p 20.9 33 0.0011 22.8 1.1 42 2-44 15-61 (79)
77 1m2k_A Silent information regu 20.8 31 0.0011 28.5 1.1 30 3-35 122-151 (249)
78 2l3k_A Rhombotin-2, linker, LI 20.4 35 0.0012 24.8 1.2 41 3-43 9-56 (123)
79 3j21_i 50S ribosomal protein L 20.1 28 0.00096 24.8 0.6 28 2-35 35-62 (83)
No 1
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=89.96 E-value=0.12 Score=36.12 Aligned_cols=27 Identities=19% Similarity=0.785 Sum_probs=20.1
Q ss_pred CCccccccCcccccceeeecCCceEeecCCCccc
Q 029119 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
.+|+|-+||..++.. ..+.+ .|++||.
T Consensus 27 v~Y~C~~CG~~~e~~----~~d~i---rCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS----RTDAV---RCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC----TTSTT---CCSSSCC
T ss_pred EEEECCCCCCcceeC----CCCCc---cCCCCCc
Confidence 368999999997654 23333 7999997
No 2
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.03 E-value=0.3 Score=33.52 Aligned_cols=27 Identities=30% Similarity=0.806 Sum_probs=19.3
Q ss_pred CCccccccCcccccceeeecCCceEeecCCCccc
Q 029119 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
+.|+|-+||+.++-= .. ..-+|++||.
T Consensus 20 v~Y~C~~Cg~~~~l~----~~---~~iRC~~CG~ 46 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ----AK---EVIRCRECGH 46 (63)
T ss_dssp CCCBCSSSCCBCCCC----SS---SCCCCSSSCC
T ss_pred eEEECCCCCCeeecC----CC---CceECCCCCc
Confidence 469999999998621 11 2347999985
No 3
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=78.60 E-value=0.54 Score=32.93 Aligned_cols=33 Identities=15% Similarity=0.549 Sum_probs=26.6
Q ss_pred CccccccCcccccceee--ecCCceEeecCCCccccccc
Q 029119 2 EYRCVKCGFRIKTLFVQ--YSPGNIRLMKCENCRAVADE 38 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~--y~~~~i~l~~C~~C~~~~Dk 38 (198)
+..|.+|+..-..+|++ ..++ +.|..|+-.--+
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g----~LCNACGl~~~~ 42 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG----IQCNACFIYQRK 42 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC----CCSSHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC----ccchHHHHHHHH
Confidence 57899999999999999 6555 789999854433
No 4
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=78.38 E-value=0.82 Score=40.31 Aligned_cols=37 Identities=19% Similarity=0.540 Sum_probs=28.3
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccccc-cccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD-EYIE 41 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D-kYiE 41 (198)
..+|.+||...+.+..+|+.|. +.|.+||-+.+ +.|.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~---~vC~~CGlVl~e~~iD 58 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGD---VVCALCGLVLSDKLVD 58 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTE---EEETTTCBEEESCCBC
T ss_pred CCcCCCCCCCCCceeEECCCCc---EEeCCCCCCccCcccc
Confidence 3579999996678888897764 58999998764 5554
No 5
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=78.04 E-value=1 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.535 Sum_probs=26.5
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D 37 (198)
...|.+||...+.+-.+++.|. +.|.+||-+.+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~---~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGD---VVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCS---CCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCC---EecCCCCeEcc
Confidence 3579999998777777887664 58999999875
No 6
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=77.28 E-value=0.78 Score=34.20 Aligned_cols=32 Identities=28% Similarity=0.787 Sum_probs=25.6
Q ss_pred CccccccCcccccceee--ecCCceEeecCCCccc
Q 029119 2 EYRCVKCGFRIKTLFVQ--YSPGNIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~--y~~~~i~l~~C~~C~~ 34 (198)
.+.|-.|+++....+.+ |.+| +.+.+|+.|++
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~G-vViv~C~gC~n 46 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEKG-TVLISCPHCKV 46 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHTS-EEEEECTTTCC
T ss_pred EEEccCCCCcchhhcCHHHhhCC-EEEEEcCCCcc
Confidence 46799999998777765 5564 58889999986
No 7
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=76.57 E-value=1.6 Score=38.25 Aligned_cols=63 Identities=16% Similarity=0.322 Sum_probs=40.7
Q ss_pred ccccccCcccccceeeecC-------CceEeecCCCccc---cccccc--cc-----hhHHHHHHHHhcCcchheeeecc
Q 029119 3 YRCVKCGFRIKTLFVQYSP-------GNIRLMKCENCRA---VADEYI--EC-----EIMILLIDLILHKPQAYRHLLYN 65 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~-------~~i~l~~C~~C~~---~~DkYi--E~-----d~~i~~iDl~L~k~~ayRHllfN 65 (198)
-.|.+||+.-+--|....+ +.+|.+.|++|+. +.|.-- +. |.--+.+|++..+.+ |+..=+|
T Consensus 223 ~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~dp~adDlatL~LDl~a~e~G-y~r~~~N 301 (309)
T 2fiy_A 223 IKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDG-YLRRSPN 301 (309)
T ss_dssp TSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHHHHHHTTHHHHHHHHHTT-CEECCCC
T ss_pred cCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhccCCCCCcchhHHHHHHHHHHHHhcC-CCCCCCC
Confidence 4799999984433433333 6899999999994 333211 12 333478888888755 8776555
Q ss_pred c
Q 029119 66 V 66 (198)
Q Consensus 66 ~ 66 (198)
-
T Consensus 302 p 302 (309)
T 2fiy_A 302 L 302 (309)
T ss_dssp T
T ss_pred c
Confidence 3
No 8
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=72.86 E-value=1.8 Score=35.61 Aligned_cols=38 Identities=18% Similarity=0.542 Sum_probs=28.3
Q ss_pred ccccccCcccccceeeecCCceEeecCCCcccccc-ccccch
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD-EYIECE 43 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D-kYiE~d 43 (198)
.+|.+||...+++..+++.|. +.|.+||-+.+ +.|...
T Consensus 22 ~~CPECGs~~t~IV~D~erGE---~VCsdCGLVLEEriID~G 60 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGD---VVCALCGLVLSDKLVDTR 60 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTE---EEETTTCBBCCCCCBCHH
T ss_pred eECcCCCCcCCeEEEeCCCCE---EEEcCCCCCcCCceeECC
Confidence 479999996677878887763 58999999764 555443
No 9
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=70.27 E-value=1.5 Score=33.14 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.6
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
-++|.+||.+- ...|=.++..+..|.+|...
T Consensus 5 ~~~C~eC~~~~---~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 5 YVICEECGKEF---MDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CEECTTTCCEE---SCSSSTTTTSCCCCTTTCSS
T ss_pred CCccccCCChh---hHHHHHHhCCeeechhhccc
Confidence 47899999872 12344557788899999864
No 10
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=70.19 E-value=1.9 Score=27.97 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=18.3
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCR 33 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~ 33 (198)
-|+|-.||+..+.-=.+.=|+. +||.||
T Consensus 3 iY~C~rCg~~fs~~el~~lP~I----rCpyCG 30 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGV----RCPYCG 30 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSS----CCTTTC
T ss_pred EEEeeccCCCccHHHHhhCCCc----ccCccC
Confidence 4889999998755433333443 899998
No 11
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=70.12 E-value=1.5 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=25.5
Q ss_pred CCccccccCcccccceeeecCCceEeecCCCccc
Q 029119 1 MEYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
+...|.+|+..-..+|++=..|. +.|..|+-
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~---~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH---YLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC---CBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC---ccchHHHH
Confidence 35789999999999999876653 78999974
No 12
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.33 E-value=1.4 Score=28.99 Aligned_cols=24 Identities=29% Similarity=0.726 Sum_probs=18.4
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.++|-.||.+++ .....|.+||..
T Consensus 14 k~iCpkC~a~~~----------~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNP----------WGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEEC----------TTCSSCSSSSSC
T ss_pred CccCCCCCCcCC----------CCceecCCCCCc
Confidence 468999999843 267899999864
No 13
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=64.76 E-value=4.1 Score=29.16 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCccccccCcccccceeee-----cCCceEeecCCCccccccc
Q 029119 1 MEYRCVKCGFRIKTLFVQY-----SPGNIRLMKCENCRAVADE 38 (198)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y-----~~~~i~l~~C~~C~~~~Dk 38 (198)
|+..|.+|+++++.-=+.+ +.+.-+...||.|++..++
T Consensus 1 M~~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 1 MEITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHH
Confidence 4567788887765422222 3334455678888877655
No 14
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=64.44 E-value=3.9 Score=27.03 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=21.2
Q ss_pred ccccccCcccccceeeecCCceEeecCCCcccccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D 37 (198)
..|.+||..- +-..+..|. ..|..||-+.+
T Consensus 12 ~~Cp~C~~~~--lv~D~~~ge---~vC~~CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAI--LVEDYRAGD---MICPECGLVVG 41 (58)
T ss_dssp CSBTTBSSSC--CEECSSSCC---EECTTTCCEEC
T ss_pred ccCcCCCCCc--eeEeCCCCe---EEeCCCCCEEe
Confidence 4799998743 545565543 68999998754
No 15
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.89 E-value=3.4 Score=30.98 Aligned_cols=26 Identities=27% Similarity=0.683 Sum_probs=18.6
Q ss_pred CccccccCcccccceeeecCCceEeecCCCccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
+|+|-+||..- ....-+-.+||.|+.
T Consensus 67 p~~C~~CG~~F-------~~~~~kPsrCP~CkS 92 (105)
T 2gmg_A 67 PAQCRKCGFVF-------KAEINIPSRCPKCKS 92 (105)
T ss_dssp CCBBTTTCCBC-------CCCSSCCSSCSSSCC
T ss_pred CcChhhCcCee-------cccCCCCCCCcCCCC
Confidence 68999999985 112224468999985
No 16
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=60.83 E-value=2.2 Score=29.70 Aligned_cols=25 Identities=36% Similarity=0.877 Sum_probs=17.9
Q ss_pred ccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.+|. ||... |..+.-+-.+|+ ||+.
T Consensus 5 v~C~-C~~~~------~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 5 FRCD-CGRAL------YSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEET-TSCCE------EEETTCSEEEET-TTEE
T ss_pred EECC-CCCEE------EEcCCCcEEECC-CCCe
Confidence 4788 99873 444455778999 9964
No 17
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=60.37 E-value=2.1 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=19.3
Q ss_pred CccccccCcccccceeeecCCceEee-cCCCccccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLM-KCENCRAVA 36 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~-~C~~C~~~~ 36 (198)
.++|-+||+..+-- -... .||.|+...
T Consensus 73 ~~~C~~CG~~~e~~--------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPN--------ALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSC--------CSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCC--------CCCCCcCccccCCC
Confidence 47899999976541 1235 799999873
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=57.90 E-value=4 Score=24.58 Aligned_cols=29 Identities=31% Similarity=0.784 Sum_probs=22.2
Q ss_pred cccccCcccccceeeecCCceEeecCCCcccc
Q 029119 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|-+|+.|=..|-++ +..-..+|..||..
T Consensus 2 lC~~C~~peT~l~~~---~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKE---GRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEE---TTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEe---CCcEEEEhhcCCCc
Confidence 589999998777663 35566789999974
No 19
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=54.80 E-value=5.5 Score=26.91 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=14.4
Q ss_pred cCCCccc-----------cccccccchhHH
Q 029119 28 KCENCRA-----------VADEYIECEIMI 46 (198)
Q Consensus 28 ~C~~C~~-----------~~DkYiE~d~~i 46 (198)
.||.||. +-|||-+|-..+
T Consensus 20 ~CP~CG~~T~~~hParfSp~Dky~~yR~~~ 49 (60)
T 2apo_B 20 ICPKCGEKTVIPKPPKFSLEDRWGKYRRML 49 (60)
T ss_dssp BCSSSCSBCBCCCCCCCCTTCTTHHHHHHH
T ss_pred cCcCCCCcCCCCCCCCCCCCcchHHHHHHH
Confidence 6999994 479999887443
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=54.26 E-value=7.1 Score=24.46 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=20.1
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVAD 37 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~D 37 (198)
...|.+||.+ .|-..+..+ -..|+.||.+.+
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g---elvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG---EIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT---EEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEcCCCC---eEECcccCCccc
Confidence 3579999883 343334443 358999998654
No 21
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=53.55 E-value=3.3 Score=26.08 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=23.8
Q ss_pred ccccccCcccccceeeecCCceEeecCCCccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
..|.+|+.....+|++-..|. +.|..|+-
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~---~LCNaCGl 30 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ---PLCNACGL 30 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC---EECHHHHH
T ss_pred CcCCccCCCCCCccccCCCCC---cccHHHHH
Confidence 469999999999999876553 78988884
No 22
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=53.39 E-value=3.1 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.574 Sum_probs=24.8
Q ss_pred CccccccCcccccceeeecCCceEeecCCCccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
...|.+||.....+|++=..|. +.|..||-
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~---~LCNACGl 36 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGD---PVCNACGL 36 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSC---CCCHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCC---chhhHHHH
Confidence 4689999999999999876654 78998983
No 23
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=53.03 E-value=3.9 Score=28.04 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=24.8
Q ss_pred CccccccCcccccceeeecCCceEeecCCCccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
...|.+||..-..++++=..|. +.|..|+-
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~---~LCNaCGl 38 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQ---PLCNACGL 38 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTE---EECHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCC---CccHHHHH
Confidence 4689999999999999876654 77999974
No 24
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=50.18 E-value=8.2 Score=23.78 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=19.6
Q ss_pred eecCCCcccc--ccccccchhHHHHHHH
Q 029119 26 LMKCENCRAV--ADEYIECEIMILLIDL 51 (198)
Q Consensus 26 l~~C~~C~~~--~DkYiE~d~~i~~iDl 51 (198)
...|++||+. .+++-|++..=+..||
T Consensus 9 ~~~C~~C~~~i~~~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 9 QVPCEKCGSLVPVWDMPEHMDYHFALEL 36 (39)
T ss_dssp EEECTTTCCEEEGGGHHHHHHHHHHHHH
T ss_pred CcccccccCcCCcccccchhhHHHHHHH
Confidence 3479999986 7778888877666654
No 25
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=46.66 E-value=8.4 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.2
Q ss_pred cCCCccc-----------cccccccchhHH
Q 029119 28 KCENCRA-----------VADEYIECEIMI 46 (198)
Q Consensus 28 ~C~~C~~-----------~~DkYiE~d~~i 46 (198)
.||.||. +-|||-+|-..+
T Consensus 19 ~CP~CG~~t~~ahParfSP~Dky~~yR~~l 48 (60)
T 2aus_D 19 TCPVCGEKTKVAHPPRFSPEDPYGEYRRRL 48 (60)
T ss_dssp BCTTTCSBCEESSCCCCCSCCTTHHHHHHH
T ss_pred cCcCCCCccCCCCCCCCCCCCchHHHHHHH
Confidence 5999984 479999887443
No 26
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=45.22 E-value=10 Score=24.09 Aligned_cols=37 Identities=22% Similarity=0.580 Sum_probs=20.2
Q ss_pred CccccccCcccccce---eeecCCceEe-ecCCCccccccccc
Q 029119 2 EYRCVKCGFRIKTLF---VQYSPGNIRL-MKCENCRAVADEYI 40 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~---~~y~~~~i~l-~~C~~C~~~~DkYi 40 (198)
.++|..||.--+.-- +.+. .+.- -.||.|+.--+++.
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~--~lP~dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFD--QLPDDWCCPVCGVSKDQFS 44 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGG--GSCTTCBCTTTCCBGGGEE
T ss_pred EEECCCCCeEEeCCcCCCcchh--hCCCCCcCcCCCCcHHHcE
Confidence 589999996432100 0010 1110 27999998766653
No 27
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.95 E-value=17 Score=28.81 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=23.6
Q ss_pred cccccCcccccceeeecCCceEeecCCCcccc
Q 029119 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|-+|+.|=..|-+. +.+.+-..+|..||..
T Consensus 105 lC~~C~sPdT~L~~~-~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 105 LCPECENPETDLHVN-PKKQTIGNSCKACGYR 135 (157)
T ss_dssp SCTTTCCSCCEEEEE-TTTTEEEEECSSSCCE
T ss_pred ECCCCCCCccEEEEe-cCCCEEEEEccCCCCC
Confidence 599999997776543 3456677789999974
No 28
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.45 E-value=24 Score=25.31 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=27.2
Q ss_pred CccccccCcccccceeeecCCceEe---ecCCCccccc----cccccchhH
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVA----DEYIECEIM 45 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~~----DkYiE~d~~ 45 (198)
.++|..|+.++..-+..-..+..=. -.|..|++.- +.|.+.|.-
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~ 53 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGR 53 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTB
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCe
Confidence 5789999999865532222222222 3577787754 378888843
No 29
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.33 E-value=14 Score=27.34 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCccccccCcccccceeee-----cCCceEeecCCCcccccc
Q 029119 1 MEYRCVKCGFRIKTLFVQY-----SPGNIRLMKCENCRAVAD 37 (198)
Q Consensus 1 ~~~~Ci~C~~~v~~l~~~y-----~~~~i~l~~C~~C~~~~D 37 (198)
|+-.|.+|+++.+.-=..| ..+.-+...||.|++.-.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHHH
Confidence 4467889998865321112 234567778888887643
No 30
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=41.33 E-value=8.8 Score=32.38 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=19.7
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.+.|-.||+... . .+-+++....+.|++|+.-
T Consensus 134 ~f~C~~C~~~~~-v-~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 134 VFECRGCMRHHA-V-TQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEETTTCCEEE-E-ECSSSSCCCCSCCTTTCCC
T ss_pred EEEcCCCCCEEE-E-EecCCcccCCCcCCCCCCC
Confidence 378999997531 1 1112233456799999963
No 31
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.35 E-value=13 Score=25.05 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=24.8
Q ss_pred CccccccCcccccceeeecCC--ceEeecCCCccc-cccccccchh
Q 029119 2 EYRCVKCGFRIKTLFVQYSPG--NIRLMKCENCRA-VADEYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~--~i~l~~C~~C~~-~~DkYiE~d~ 44 (198)
.++|-.|+.++..-+.+.... +..--.|..|++ +.++++|.|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g 60 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKG 60 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCEEETT
T ss_pred CCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCEeECC
Confidence 478999999987554433221 112235777776 4455556553
No 32
>2x5r_A Hypothetical protein ORF126; unknown function, viral protein; 2.00A {Pyrobaculum spherical virus}
Probab=38.11 E-value=23 Score=26.26 Aligned_cols=32 Identities=34% Similarity=0.639 Sum_probs=17.9
Q ss_pred CccccccCccc--ccceeee--cCC-ceEeecCCCcc
Q 029119 2 EYRCVKCGFRI--KTLFVQY--SPG-NIRLMKCENCR 33 (198)
Q Consensus 2 ~~~Ci~C~~~v--~~l~~~y--~~~-~i~l~~C~~C~ 33 (198)
.|+|+.||..- ++-|+.. .+| .---..|++|.
T Consensus 77 kprcvkcgaayngknhfrvvairngtyyldavcdkce 113 (127)
T 2x5r_A 77 KPRCVKCGAAYNGKNHFRVVAIRNGTYYLDAVCDKCE 113 (127)
T ss_dssp CCBCTTTCCBCCSSSCEEEEEETTTTEEEEEEETTTC
T ss_pred CcceeeecccccCCCcEEEEEEecCcEEeeeeccccc
Confidence 58999999863 3334332 222 22234677763
No 33
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=38.06 E-value=8.1 Score=29.66 Aligned_cols=11 Identities=27% Similarity=1.117 Sum_probs=8.5
Q ss_pred ccccccCcccc
Q 029119 3 YRCVKCGFRIK 13 (198)
Q Consensus 3 ~~Ci~C~~~v~ 13 (198)
.+|-+||+..+
T Consensus 71 ~~C~~CG~~~~ 81 (139)
T 3a43_A 71 FKCRNCNYEWK 81 (139)
T ss_dssp EEETTTCCEEE
T ss_pred EECCCCCCEEe
Confidence 57999998743
No 34
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.73 E-value=9.7 Score=24.47 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.8
Q ss_pred cccccCccc
Q 029119 4 RCVKCGFRI 12 (198)
Q Consensus 4 ~Ci~C~~~v 12 (198)
-|.+||.++
T Consensus 21 ~CP~CG~~~ 29 (50)
T 3j20_Y 21 FCPRCGPGV 29 (50)
T ss_dssp ECSSSCSSC
T ss_pred cCCCCCCce
Confidence 467777754
No 35
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=34.98 E-value=23 Score=28.45 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred cccccCcccccceeeecCCceEeecCCCcccc
Q 029119 4 RCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|-+|+.|=..|-++- .+.+-..+|..||..
T Consensus 98 lC~~C~sPdT~L~k~~-~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 98 LCPECENPETDLHVNP-KKQTIGNSCKACGYR 128 (170)
T ss_dssp SCTTTSSSCEEEEEET-TTTEEEEEETTTCCC
T ss_pred ECCCCCCCccEEEEec-CCCEEEEEccccCCc
Confidence 5999999977765522 345566789999964
No 36
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.67 E-value=21 Score=25.95 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=19.8
Q ss_pred ccccccCccccc-----ceeeecCCceE-----eecCCCcccc
Q 029119 3 YRCVKCGFRIKT-----LFVQYSPGNIR-----LMKCENCRAV 35 (198)
Q Consensus 3 ~~Ci~C~~~v~~-----l~~~y~~~~i~-----l~~C~~C~~~ 35 (198)
..|..||..... .-..|++..+. -..|+.||..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCE
Confidence 479999987321 12245555444 4468888863
No 37
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=33.25 E-value=21 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=18.9
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|.|..||.+ .+++. +. ..-+|++|++.
T Consensus 27 ~y~Cp~CG~~--~v~r~-at---GiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGED--RVDRQ-GT---GIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCE--EEEEE-ET---TEEEETTTCCE
T ss_pred cCcCCCCCCc--ceecc-CC---CeEECCCCCCE
Confidence 5789999974 23222 22 35689999985
No 38
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=32.88 E-value=11 Score=28.23 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.9
Q ss_pred CccccccCcccccceeeecCCceEeecCCCccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
+..|.+||.....++++=..| -+.|..|+-
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g---~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG---HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS---CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC---CCcCcchhh
Confidence 468999999999999986555 368999984
No 39
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=31.40 E-value=16 Score=26.60 Aligned_cols=27 Identities=26% Similarity=0.726 Sum_probs=19.4
Q ss_pred ccccccCcccccceeeecCCceEeecCCCccccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVA 36 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~ 36 (198)
+.|- |+++.-+| .++.+ ..|++|+...
T Consensus 49 FkC~-C~~Rt~sl-~r~P~-----~~C~~Cg~~~ 75 (92)
T 2kwq_A 49 FKCP-CGNRTISL-DRLPK-----KHCSTCGLFK 75 (92)
T ss_dssp EECT-TSCEEEES-SSSCC-----SCCTTTCSCC
T ss_pred EECC-CCCceeEe-eeCCC-----CCCCCCCCCc
Confidence 4685 99998887 34543 3799999864
No 40
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=30.63 E-value=23 Score=25.64 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=15.0
Q ss_pred eecCCceEeecCCC-ccccc
Q 029119 18 QYSPGNIRLMKCEN-CRAVA 36 (198)
Q Consensus 18 ~y~~~~i~l~~C~~-C~~~~ 36 (198)
+.|..|||+..|++ |++--
T Consensus 25 qssdknirlkicdnscnqel 44 (109)
T 3u4z_A 25 QSSDKNIRLKICDNSCNQEL 44 (109)
T ss_dssp ECCSSCEEEEEECSSCSSCE
T ss_pred hcCCCceEEEeeccccccee
Confidence 44677999999998 88743
No 41
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=30.35 E-value=17 Score=26.19 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=12.9
Q ss_pred cCCCccccccccccch
Q 029119 28 KCENCRAVADEYIECE 43 (198)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (198)
.||.|+.--+.+.+.+
T Consensus 70 ~CPvCga~K~~F~~i~ 85 (87)
T 1s24_A 70 CCPDCGATKEDYVLYE 85 (87)
T ss_dssp CCSSSCCCGGGEEECS
T ss_pred CCCCCCCCHHHhhhcc
Confidence 6999999888877654
No 42
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=29.30 E-value=26 Score=24.36 Aligned_cols=27 Identities=30% Similarity=0.829 Sum_probs=19.3
Q ss_pred CccccccCcc-cccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~-v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|.|..||.. ++.. ..-+=+|++|++.
T Consensus 27 ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRA-------STSIWVCGHCGYK 54 (73)
T ss_pred CccCCCCCCceeEEE-------EeEEEECCCCCcE
Confidence 5789999974 5443 2345789999985
No 43
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=29.18 E-value=23 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.719 Sum_probs=18.9
Q ss_pred CccccccCcc-cccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~-v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|.|..||.. ++. - ..-+=+|++|++.
T Consensus 26 ky~C~fCgk~~vkR----~---a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 26 RYDCSFCGKKTVKR----G---AAGIWTCSCCKKT 53 (72)
T ss_dssp CBCCSSCCSSCBSB----C---SSSCBCCSSSCCC
T ss_pred CccCCCCCCceeEe----c---CCCeEECCCCCCE
Confidence 5889999987 333 1 2346689999974
No 44
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=28.86 E-value=15 Score=25.29 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=11.9
Q ss_pred cCCCccc-cccccccchh
Q 029119 28 KCENCRA-VADEYIECEI 44 (198)
Q Consensus 28 ~C~~C~~-~~DkYiE~d~ 44 (198)
+|=+||+ ++|||-||..
T Consensus 6 RCFTCGkvi~~k~~~y~~ 23 (66)
T 4ayb_N 6 RCFTCGSLIADKWQPFIT 23 (66)
T ss_dssp BCTTTCCBCHHHHHHHHH
T ss_pred ccCCCcHhHHHHHHHHHH
Confidence 5777877 4677777654
No 45
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=28.73 E-value=18 Score=27.74 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=19.1
Q ss_pred ccccccCcccccceeeecCCceEeecCCCccccccccccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAVADEYIEC 42 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~~DkYiE~ 42 (198)
.+|-.||+.. |-|. ..|++|+....+.+|.
T Consensus 48 ~rC~~CG~~~------~PPr----~~Cp~C~s~~~~~ve~ 77 (145)
T 3irb_A 48 SKCSKCGRIF------VPAR----SYCEHCFVKIENYVEI 77 (145)
T ss_dssp EECTTTCCEE------ESCC----SEETTTTEECCEEEEC
T ss_pred EEeCCCCcEE------cCch----hhCcCCCCCceeeeee
Confidence 4688888754 3332 2588888766666663
No 46
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=28.45 E-value=11 Score=26.30 Aligned_cols=18 Identities=28% Similarity=0.659 Sum_probs=12.2
Q ss_pred ccccccCcccccceeeec
Q 029119 3 YRCVKCGFRIKTLFVQYS 20 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~ 20 (198)
-||-.||.++.+.|.+|.
T Consensus 5 VRCFTCGkvi~~~we~y~ 22 (70)
T 1twf_J 5 VRCFSCGKVVGDKWESYL 22 (70)
T ss_dssp SBCTTTCCBCTTCHHHHH
T ss_pred eecCCCCCChHHHHHHHH
Confidence 367777777777776663
No 47
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=28.19 E-value=7.6 Score=25.84 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=10.9
Q ss_pred cccccCcccccceeeec
Q 029119 4 RCVKCGFRIKTLFVQYS 20 (198)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~ 20 (198)
+|-.||.++.+.|.+|.
T Consensus 5 RCFTCGkvi~~~we~y~ 21 (55)
T 1ef4_A 5 RCLSCGKPVSAYFNEYQ 21 (55)
T ss_dssp SCSCTTSCCHHHHHHHH
T ss_pred ecCCCCCChhHHHHHHH
Confidence 56666666666666664
No 48
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.49 E-value=22 Score=22.62 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=24.7
Q ss_pred CccccccCcccccceeeecCCceEe---ecCCCcccc--ccccccchh
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV--ADEYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~--~DkYiE~d~ 44 (198)
.++|..|+.++..-+... .+..=. -.|..|++. .+.|.+.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a-~~~~~H~~CF~C~~C~~~L~~~~~~~~~g 51 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNA-MGKQWHVEHFVCAKCEKPFLGHRHYERKG 51 (66)
T ss_dssp CCEETTTTEECCSCEECC-TTSBEETTTCBCTTTCCBCSSSCCEEETT
T ss_pred CCCCcccCCEecceEEEE-CccccccCcCEECCCCCCCCCCceEeECC
Confidence 478999999986443322 222222 246777764 236777764
No 49
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.90 E-value=19 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.4
Q ss_pred cCCCccccccccccch
Q 029119 28 KCENCRAVADEYIECE 43 (198)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (198)
.||.|+.--+++.+.+
T Consensus 38 ~CP~Cga~K~~F~~~~ 53 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMIE 53 (55)
T ss_dssp CCTTTCCCGGGEEECC
T ss_pred cCCCCCCCHHHceecc
Confidence 6999999888887765
No 50
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=25.67 E-value=16 Score=29.22 Aligned_cols=26 Identities=31% Similarity=0.695 Sum_probs=17.9
Q ss_pred ccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
|.|.+|+..|.. -+.| .-.|++|++.
T Consensus 43 ~ACp~CnKKV~~----~~~g---~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLK----YHGD---SFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEE----ETTT---EEEETTTTEE
T ss_pred hhchhhCCEeee----CCCC---eEECCCCCCC
Confidence 578999988753 1232 2369999987
No 51
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=25.64 E-value=19 Score=23.98 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=16.3
Q ss_pred CccccccCcccccceeeecCCceEeecCCCccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~ 34 (198)
..||-.|+.+.+- +-+.|.+||.
T Consensus 19 k~ICrkC~ARnp~----------~A~~CRKCg~ 41 (56)
T 2ayj_A 19 KKVCRKCGALNPI----------RATKCRRCHS 41 (56)
T ss_dssp CEEETTTCCEECT----------TCSSCTTTCC
T ss_pred hhhhccccCcCCc----------ccccccCCCC
Confidence 3578888887643 5668888873
No 52
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.31 E-value=17 Score=24.27 Aligned_cols=8 Identities=38% Similarity=0.820 Sum_probs=5.0
Q ss_pred ecCCCccc
Q 029119 27 MKCENCRA 34 (198)
Q Consensus 27 ~~C~~C~~ 34 (198)
..|++||-
T Consensus 44 ~vc~~CG~ 51 (60)
T 2zjr_Z 44 HICPNCGY 51 (60)
T ss_dssp BCCTTTCB
T ss_pred eEcCCCCc
Confidence 36777773
No 53
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.07 E-value=42 Score=24.29 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=21.6
Q ss_pred CccccccCcccccceeeecCCce---EeecCCCccccc----cccccchh
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNI---RLMKCENCRAVA----DEYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i---~l~~C~~C~~~~----DkYiE~d~ 44 (198)
.++|..|+.++..-+..-..+.. .--.|..|++.- +.|++.|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g 54 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSG 54 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETT
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECC
Confidence 46777788776543311112211 112566676643 35766664
No 54
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=46 Score=22.33 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=24.0
Q ss_pred CccccccCcccccceeeecCCceE---eecCCCccc-cccccccchh
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIR---LMKCENCRA-VADEYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~---l~~C~~C~~-~~DkYiE~d~ 44 (198)
.++|..|+.++..-...-..+..= --.|..|++ +.++|+|.|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g 61 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDG 61 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCEEETT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeEEECC
Confidence 468999999985211111112111 235677776 4567887773
No 55
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.99 E-value=32 Score=23.58 Aligned_cols=15 Identities=20% Similarity=0.676 Sum_probs=12.4
Q ss_pred cCCCccccccccccc
Q 029119 28 KCENCRAVADEYIEC 42 (198)
Q Consensus 28 ~C~~C~~~~DkYiE~ 42 (198)
.||.|+..-+++.+.
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 699999988877664
No 56
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=28 Score=22.73 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred CccccccCcccc--cceeeecCCceEe---ecCCCcccccc--ccccchh
Q 029119 2 EYRCVKCGFRIK--TLFVQYSPGNIRL---MKCENCRAVAD--EYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~--~l~~~y~~~~i~l---~~C~~C~~~~D--kYiE~d~ 44 (198)
.++|..|+.++. +...+.. |..-. -.|..|++.-+ .|.+.|.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 59 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSN-GELYHEQCFVCAQCFQQFPEGLFYEFEG 59 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEET-TEEECTTTCCCTTTCCCCGGGCSEEETT
T ss_pred CCCchhcCCccCCCceEEEeC-ccEeccccCeECCCCCCCCCCCeEeECC
Confidence 478999999984 3322221 22222 24666776433 5677664
No 57
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.54 E-value=22 Score=25.22 Aligned_cols=16 Identities=25% Similarity=0.690 Sum_probs=13.4
Q ss_pred cCCCccccccccccch
Q 029119 28 KCENCRAVADEYIECE 43 (198)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (198)
.||.|+..-+++.+.+
T Consensus 62 ~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CCTTTCCCGGGEEEEC
T ss_pred cCCCCCCCHHHcEEcc
Confidence 6999999888887654
No 58
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=24.36 E-value=27 Score=22.50 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.8
Q ss_pred cCCCccccccccccc
Q 029119 28 KCENCRAVADEYIEC 42 (198)
Q Consensus 28 ~C~~C~~~~DkYiE~ 42 (198)
.||.|+.--+.+.+.
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 699999987776553
No 59
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.28 E-value=34 Score=23.23 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=24.2
Q ss_pred CccccccCcccccceeeecCCceEe---ecCCCcccc-cc-ccccchh
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV-AD-EYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~-~D-kYiE~d~ 44 (198)
.++|-.|+.++..-+.+.. +..-. -.|..|++. .+ .|++.|.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 71 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKAR-DKYRHPECFVCADCNLNLKQKGYFFVEG 71 (89)
T ss_dssp CCBCTTTCCBCCSCCEESS-SCEECTTTCCCSSSCCCTTTSCCEEETT
T ss_pred CCCcccCCCEecccEEEEC-CceECccCCEecCCCCCCCCCCeEeECC
Confidence 3689999999876443322 22222 246667764 33 5777663
No 60
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=23.88 E-value=35 Score=30.23 Aligned_cols=36 Identities=19% Similarity=0.620 Sum_probs=23.8
Q ss_pred CccccccCcccc-ccee-e----------ecCCceEeecCCCcccccc
Q 029119 2 EYRCVKCGFRIK-TLFV-Q----------YSPGNIRLMKCENCRAVAD 37 (198)
Q Consensus 2 ~~~Ci~C~~~v~-~l~~-~----------y~~~~i~l~~C~~C~~~~D 37 (198)
.|.|-.||.+.+ .-+. . ++.+.+.+-+|++||+..+
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~r 166 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITR 166 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccc
Confidence 588999998742 2221 1 2334577789999998754
No 61
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.61 E-value=41 Score=21.95 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=12.3
Q ss_pred cCCCccccccccccch
Q 029119 28 KCENCRAVADEYIECE 43 (198)
Q Consensus 28 ~C~~C~~~~DkYiE~d 43 (198)
.||.|+.--+++.+.+
T Consensus 38 ~CP~Cg~~K~~F~~~~ 53 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEVE 53 (54)
T ss_dssp BCTTTCCBGGGEEECC
T ss_pred cCcCCCCcHHHceEcc
Confidence 6999999877776543
No 62
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=23.56 E-value=32 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.717 Sum_probs=10.4
Q ss_pred ccccccC-----cccccceee
Q 029119 3 YRCVKCG-----FRIKTLFVQ 18 (198)
Q Consensus 3 ~~Ci~C~-----~~v~~l~~~ 18 (198)
-.|+.|| .|...++..
T Consensus 51 ~~Ci~C~~C~~~CP~~ai~~~ 71 (182)
T 3i9v_9 51 EKCIGCSLCAAACPAYAIYVE 71 (182)
T ss_dssp BSCCCCCHHHHHCTTCCEEEE
T ss_pred ccCcccccchhhCCcccEEee
Confidence 4799998 455555443
No 63
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=22.71 E-value=32 Score=23.97 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=17.5
Q ss_pred CccccccC--c-----ccccceeeecCCceEeecCCCccccc
Q 029119 2 EYRCVKCG--F-----RIKTLFVQYSPGNIRLMKCENCRAVA 36 (198)
Q Consensus 2 ~~~Ci~C~--~-----~v~~l~~~y~~~~i~l~~C~~C~~~~ 36 (198)
.-.|+.|| . |...+...-+.-.+....|..|+.-+
T Consensus 5 ~~~C~~C~~~~C~~~CP~~ai~~~~~~~~i~~~~C~~Cg~C~ 46 (106)
T 7fd1_A 5 TDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCE 46 (106)
T ss_dssp CGGGTTTCCCHHHHHCTTCCEEECSSCEEECTTTCCCCCTTG
T ss_pred ccccCCccCcHHHHHcCccceEcCCCcEEECcccCCChhhhH
Confidence 34799998 2 44443222111123335677777543
No 64
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=22.54 E-value=35 Score=23.03 Aligned_cols=21 Identities=24% Similarity=0.681 Sum_probs=14.1
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.+.|..|+.+ .+.+|.+|+.+
T Consensus 15 ~~~C~~C~~~-------------~~~~Cs~Ck~v 35 (70)
T 2d8q_A 15 RPRCAYCSAE-------------ASKRCSRCQNE 35 (70)
T ss_dssp CCBCSSSCCB-------------CCCBCTTTSCC
T ss_pred CCcCCCCCCc-------------ccccCCCCCCE
Confidence 4678888874 13478887754
No 65
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.38 E-value=31 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=24.1
Q ss_pred CccccccCcccccceeeecCC--ceEeecCCCccccc---cccccch
Q 029119 2 EYRCVKCGFRIKTLFVQYSPG--NIRLMKCENCRAVA---DEYIECE 43 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~--~i~l~~C~~C~~~~---DkYiE~d 43 (198)
.++|-.|+.++..-+....+. +..--.|..|++.- +.|.+.|
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~ 51 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQG 51 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEET
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeC
Confidence 478999999986643332211 11123577777753 4666655
No 66
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.34 E-value=39 Score=22.96 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=22.0
Q ss_pred CccccccCcccccceeeecCCceEe---ecCCCccccc--cccccch
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAVA--DEYIECE 43 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~~--DkYiE~d 43 (198)
.++|-.|+.++..-+... .+..-. -.|..|++.- +.|.+.|
T Consensus 25 ~~~C~~C~~~I~~~~v~a-~~~~~H~~CF~C~~C~~~L~~~~f~~~~ 70 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVA-LGKSWHPEEFNCAHCKNTMAYIGFVEEK 70 (90)
T ss_dssp CCBBSSSCCBCCSCEEEE-TTEEECTTTCBCSSSCCBCSSSCBEESS
T ss_pred CCCCccCCCEecceEEEE-CCccccccCCccCCCCCCCCCCEeEeEC
Confidence 467999999885433322 122222 2466666642 2466555
No 67
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.31 E-value=29 Score=22.24 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=23.7
Q ss_pred CccccccCcccccceeeecCCceEe---ecCCCcccc--ccccccch
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRL---MKCENCRAV--ADEYIECE 43 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l---~~C~~C~~~--~DkYiE~d 43 (198)
.++|-.|+.++..-+.+.. +..=. -.|..|++. -+.|.+.|
T Consensus 5 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~ 50 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQ-DQPWHADCFVCVTCSKKLAGQRFTAVE 50 (69)
T ss_dssp CCCCSSSCCCCCTTCEEET-TEEECTTTTBCTTTCCBCTTSCEEECS
T ss_pred cCCCcccCCEeCcceEEEC-ccccccCcCEECCCCCCCCCCccEeEC
Confidence 4789999999854333222 11122 246777764 34576666
No 68
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=22.26 E-value=30 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=18.8
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|.|..||... +-+ -+ .-+=+|.+|++.
T Consensus 36 ky~CpfCgk~~--vkR-~a---~GIW~C~~Cg~~ 63 (92)
T 3iz5_m 36 KYFCEFCGKFA--VKR-KA---VGIWGCKDCGKV 63 (92)
T ss_dssp CBCCTTTCSSC--BEE-EE---TTEEECSSSCCE
T ss_pred cccCcccCCCe--eEe-cC---cceEEcCCCCCE
Confidence 58899999872 211 12 245689999974
No 69
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=21.98 E-value=22 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=15.5
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
+..|.+|..-+ .-+.||+|+..
T Consensus 11 ~~AC~~C~~~~------------~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT------------SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE------------SSSSCTTTCCC
T ss_pred hhhHHhCCccc------------cCCcCCCccCC
Confidence 56799998833 22379999943
No 70
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.61 E-value=54 Score=20.87 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=15.7
Q ss_pred cccccCcccccceeeec---C--CceEeecCCCcccc
Q 029119 4 RCVKCGFRIKTLFVQYS---P--GNIRLMKCENCRAV 35 (198)
Q Consensus 4 ~Ci~C~~~v~~l~~~y~---~--~~i~l~~C~~C~~~ 35 (198)
.|.+||+. +..|.+-+ . +--.--.|.+|+..
T Consensus 17 ~Cp~Cg~~-~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 17 TCPKCGND-TAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp CCTTTCCS-EEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred ECCCCCCC-EEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 58888883 33333321 1 11233468888763
No 71
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=21.61 E-value=13 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=16.6
Q ss_pred ccccccCcccccce--eeecCCceEeecCCCcccc
Q 029119 3 YRCVKCGFRIKTLF--VQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~--~~y~~~~i~l~~C~~C~~~ 35 (198)
.+|..|+++.+.-. .+...+ ++-.|++|+.+
T Consensus 140 ~~C~~C~~~~~~~~~~~~i~~~--~~P~C~~Cgg~ 172 (285)
T 3glr_A 140 ATCTVCQRPFPGEDIRADVMAD--RVPRCPVCTGV 172 (285)
T ss_dssp EEETTTCCEEEGGGGHHHHHTT--CCCBCTTTCCB
T ss_pred EEECCCCCcCCHHHHHHHhhcC--CCCCCCCCCCc
Confidence 47888987643211 001111 34579999854
No 72
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=21.38 E-value=45 Score=23.12 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=10.6
Q ss_pred CceEeecCCCcc
Q 029119 22 GNIRLMKCENCR 33 (198)
Q Consensus 22 ~~i~l~~C~~C~ 33 (198)
+.+++..|++|+
T Consensus 29 ~~i~vdi~s~~H 40 (73)
T 1nkw_Y 29 PEIHVDVWSGVH 40 (73)
T ss_pred CCEEEEECCCCC
Confidence 459999999998
No 73
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=21.27 E-value=16 Score=30.21 Aligned_cols=9 Identities=22% Similarity=0.984 Sum_probs=5.7
Q ss_pred eecCCCccc
Q 029119 26 LMKCENCRA 34 (198)
Q Consensus 26 l~~C~~C~~ 34 (198)
.-.|++|+.
T Consensus 145 ~p~C~~Cgg 153 (246)
T 1yc5_A 145 VPLCDDCNS 153 (246)
T ss_dssp SCBCTTTCC
T ss_pred CCCCCCCCC
Confidence 446777764
No 74
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=21.16 E-value=50 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=18.9
Q ss_pred CccccccCcc-c-cc---ceeeecCC-----ceEeecCCCccc
Q 029119 2 EYRCVKCGFR-I-KT---LFVQYSPG-----NIRLMKCENCRA 34 (198)
Q Consensus 2 ~~~Ci~C~~~-v-~~---l~~~y~~~-----~i~l~~C~~C~~ 34 (198)
...|..||.. . +. .-..|+.. ++.-..|+.||.
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE 44 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEE 44 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCC
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCC
Confidence 3579999864 2 22 22346554 344556777775
No 75
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=21.11 E-value=30 Score=25.17 Aligned_cols=27 Identities=26% Similarity=0.736 Sum_probs=18.4
Q ss_pred CccccccCcc-cccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFR-IKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~-v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|.|..||.. ++. -+ .-+=+|.+|++.
T Consensus 36 ky~CpfCgk~~vkR----~a---~GIW~C~~C~~~ 63 (92)
T 3izc_m 36 RYDCSFCGKKTVKR----GA---AGIWTCSCCKKT 63 (92)
T ss_dssp CCCCSSSCSSCCEE----EE---TTEEECTTTCCE
T ss_pred CCcCCCCCCceeee----cc---cceEEcCCCCCE
Confidence 5889999976 222 12 235689999874
No 76
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.92 E-value=33 Score=22.75 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=23.6
Q ss_pred CccccccCcccccceeeecCCceEee---cCCCcccc-c-cccccchh
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLM---KCENCRAV-A-DEYIECEI 44 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~---~C~~C~~~-~-DkYiE~d~ 44 (198)
.++|-.|+.++..-+.+.. +..-.. .|..|++. . +.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~-~~~~H~~CF~C~~C~~~L~~~~~~~~~g 61 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLR-DRHRHPECYVCTDCGTNLKQKGHFFVED 61 (79)
T ss_dssp CCCCSSSCCCCCSSCEECS-SCEECTTTTSCSSSCCCHHHHCCEESSS
T ss_pred CCccccCCCCccCcEEEEC-cceeCcCcCeeCCCCCCCCCCCeEeECC
Confidence 4689999999865333222 222222 46667664 2 24777663
No 77
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=20.76 E-value=31 Score=28.49 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=15.7
Q ss_pred ccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 3 YRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 3 ~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.+|..|++..+.-+. ...+ ..-.|++|+..
T Consensus 122 ~~C~~C~~~~~~~~~-~~~~--~~p~C~~Cgg~ 151 (249)
T 1m2k_A 122 VRCTSCNNSFEVESA-PKIP--PLPKCDKCGSL 151 (249)
T ss_dssp EEESSSSCEEECSSC-CCSS--SCCBCSSSSSB
T ss_pred eEeCCCCCcccchhh-ccCC--CCCCCCCCCCC
Confidence 468888874221100 1111 24578888864
No 78
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.37 E-value=35 Score=24.78 Aligned_cols=41 Identities=22% Similarity=0.536 Sum_probs=24.5
Q ss_pred ccccccCcccc--cceeeecCC--ceEeecCCCccccc---cccccch
Q 029119 3 YRCVKCGFRIK--TLFVQYSPG--NIRLMKCENCRAVA---DEYIECE 43 (198)
Q Consensus 3 ~~Ci~C~~~v~--~l~~~y~~~--~i~l~~C~~C~~~~---DkYiE~d 43 (198)
++|..|+.++. ....+.... +..=-.|..|++.- |.|.+.|
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~ 56 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLIN 56 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeC
Confidence 48999999986 333222211 11223577787764 5688777
No 79
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.15 E-value=28 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=18.5
Q ss_pred CccccccCcccccceeeecCCceEeecCCCcccc
Q 029119 2 EYRCVKCGFRIKTLFVQYSPGNIRLMKCENCRAV 35 (198)
Q Consensus 2 ~~~Ci~C~~~v~~l~~~y~~~~i~l~~C~~C~~~ 35 (198)
.|.|..||..- + ++-+ .-+=+|.+|++.
T Consensus 35 ky~CpfCGk~~--v-kR~a---~GIW~C~kCg~~ 62 (83)
T 3j21_i 35 KHTCPVCGRKA--V-KRIS---TGIWQCQKCGAT 62 (83)
T ss_dssp CBCCSSSCSSC--E-EEEE---TTEEEETTTCCE
T ss_pred ccCCCCCCCce--e-EecC---cCeEEcCCCCCE
Confidence 58899999872 2 1122 235689999874
Done!