BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029120
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E69|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E69|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E69|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E69|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Sulfate
pdb|2E6B|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6B|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6B|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6B|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Magnesium And Tungstate
pdb|2E6C|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6C|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6C|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6C|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 Cocrystallized With
Manganese And Amp
pdb|2E6E|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6E|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6E|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6E|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8
pdb|2E6G|A Chain A, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|B Chain B, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|C Chain C, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|D Chain D, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|E Chain E, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|F Chain F, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|G Chain G, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|H Chain H, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|I Chain I, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|J Chain J, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|K Chain K, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
pdb|2E6G|L Chain L, Crystal Structure Of The Stationary Phase Survival Protein
Sure From Thermus Thermophilus Hb8 In Complex With
Phosphate
Length = 244
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAV----SSA 124
+LVTN DGI SPGL L EA + G V V AP +++S +GH++T+ + S
Sbjct: 3 ILVTNDDGIYSPGLWALAEAASQFG--EVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPL 60
Query: 125 EINGATAYEVSGTPVDCVSLALSGALFSWSKPL-LVISGINRGSSCGHHMC 174
AY V GTP DCV+L L LF P+ LV+SG+N GS+ GH +
Sbjct: 61 HAPHFPAYRVRGTPADCVALGLH--LFG---PVDLVLSGVNLGSNLGHEIW 106
>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
Length = 247
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN- 127
+LVTN DGI+S G++ L E L E + V V AP ++S +GHS+T+ + + I+
Sbjct: 3 ILVTNDDGIQSKGIIVLAELLSEE--HEVFVVAPDKERSATGHSITIHVPLWMKKVFISE 60
Query: 128 GATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 170
AY +GTP DCV LA + + + L++SG+NRG + G
Sbjct: 61 RVVAYSTTGTPADCVKLAYNVVMD--KRVDLIVSGVNRGPNMG 101
>pdb|2E6H|A Chain A, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
pdb|2E6H|B Chain B, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
pdb|2E6H|C Chain C, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
pdb|2E6H|D Chain D, Crystal Structure Of E37a Mutant Of The Stationary Phase
Survival Protein Sure From Thermus Thermophilus Hb8
Cocrystallized With Manganese And Amp
Length = 244
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAV----SSA 124
+LVTN DGI SPGL L EA + G V V AP + +S +GH++T+ + S
Sbjct: 3 ILVTNDDGIYSPGLWALAEAASQFG--EVFVAAPDTAQSAAGHAITIAHPVRAYPHPSPL 60
Query: 125 EINGATAYEVSGTPVDCVSLALSGALFSWSKPL-LVISGINRGSSCGHHMC 174
AY V GTP DCV+L L LF P+ LV+SG+N GS+ GH +
Sbjct: 61 HAPHFPAYRVRGTPADCVALGLH--LFG---PVDLVLSGVNLGSNLGHEIW 106
>pdb|1ILV|A Chain A, Crystal Structure Analysis Of The Tm107
pdb|1ILV|B Chain B, Crystal Structure Analysis Of The Tm107
Length = 247
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN- 127
+LVTN DGI+S G++ L E L E + V V AP ++S +GHS+T+ + I+
Sbjct: 3 ILVTNDDGIQSKGIIVLAELLSEE--HEVFVVAPDKERSATGHSITIHVPLWXKKVFISE 60
Query: 128 GATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 170
AY +GTP DCV LA + + + L++SG+NRG + G
Sbjct: 61 RVVAYSTTGTPADCVKLAYN--VVXDKRVDLIVSGVNRGPNXG 101
>pdb|2WQK|A Chain A, Crystal Structure Of Sure Protein From Aquifex Aeolicus
pdb|2WQK|B Chain B, Crystal Structure Of Sure Protein From Aquifex Aeolicus
Length = 251
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI 126
P L+ N DG SPG+ L EAL + L V V AP + S GHS+T E + + +
Sbjct: 2 PTFLLVNDDGYFSPGINALREAL--KSLGRVVVVAPDRNLSGVGHSLTFTEPLKMRKIDT 59
Query: 127 NGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRG 181
+ T + GTP DCV L + KP LV+SGIN G + G + + G
Sbjct: 60 DFYTV--IDGTPADCVHLGYR-VILEEKKPDLVLSGINEGPNLGEDITYSGTVSG 111
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A
Survival Protein E (Sure) Homolog From Pyrobaculum
Aerophilum
pdb|1L5X|B Chain B, The 2.0-Angstrom Resolution Crystal Structure Of A
Survival Protein E (Sure) Homolog From Pyrobaculum
Aerophilum
Length = 280
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
+LVTN DG+ SPGL L + + G +V V AP+S KS +G +TL + + ++ G
Sbjct: 3 ILVTNDDGVHSPGLRLLYQFALSLG--DVDVVAPESPKSATGLGITLHKPLRXYEVDLCG 60
Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTF 188
A SGTP D V LA G + +V+SGIN G + + G
Sbjct: 61 FRAIATSGTPSDTVYLATFGLGRKYD---IVLSGINLGDNTSLQVILSSGTLGAAFQAAL 117
Query: 189 SVHIPKL 195
+ IP L
Sbjct: 118 -LGIPAL 123
>pdb|2V4N|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 1.7
Angstrom Resolution In Orthorhombic Form
Length = 254
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
+L++N DG+ +PG+ L +AL RE +V V AP ++S + +S+TL ++ + + NG
Sbjct: 4 ILLSNDDGVHAPGIQTLAKAL-RE-FADVQVVAPDRNRSGASNSLTLESSLRTFTFD-NG 60
Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 170
A ++ GTP DCV L ++ + +P +V+SGIN G + G
Sbjct: 61 DIAVQM-GTPTDCVYLGVNALMR--PRPDIVVSGINAGPNLG 99
>pdb|2V4O|A Chain A, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
pdb|2V4O|B Chain B, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
pdb|2V4O|C Chain C, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
pdb|2V4O|D Chain D, Crystal Structure Of Salmonella Typhimurium Sure At 2.75
Angstrom Resolution In Monoclinic Form
Length = 267
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
+L++N DG+ +PG+ L +AL RE +V V AP ++S + +S+TL ++ + + NG
Sbjct: 17 ILLSNDDGVHAPGIQTLAKAL-RE-FADVQVVAPDRNRSGASNSLTLESSLRTFTFD-NG 73
Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 170
A ++ GTP DCV L ++ + +P +V+SGIN G + G
Sbjct: 74 DIAVQM-GTPTDCVYLGVNALMR--PRPDIVVSGINAGPNLG 112
>pdb|3TY2|A Chain A, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
Burnetii
pdb|3TY2|B Chain B, Structure Of A 5'-Nucleotidase (Sure) From Coxiella
Burnetii
Length = 261
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEING 128
LL++N DG+ + GL L + L G V V AP ++S + +S+TL + + + E NG
Sbjct: 14 LLLSNDDGVYAKGLAILAKTLADLG--EVDVVAPDRNRSGASNSLTLNAPLHIKNLE-NG 70
Query: 129 ATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGINRGSSCG 170
+ V GTP DCV LA++G L P V++GIN G + G
Sbjct: 71 XIS--VEGTPTDCVHLAITGVLP--EXPDXVVAGINAGPNLG 108
>pdb|2BVT|A Chain A, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVT|B Chain B, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVY|A Chain A, The Structure And Characterization Of A Modular
Endo-Beta-1, 4-Mannanase From Cellulomonas Fimi
Length = 475
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 97 VHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVS--GTPVDCVSLALSGALFSWS 154
VH+ +P V+ T+R + V ++ T EV+ GT VD + LA GAL+ W+
Sbjct: 375 VHIASPADGARVASAPTTVR--VRVGGTDVQSVTV-EVAQGGTVVDTLDLAYDGALW-WT 430
Query: 155 KP 156
P
Sbjct: 431 AP 432
>pdb|2X2Y|A Chain A, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
pdb|2X2Y|B Chain B, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
Length = 475
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 97 VHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVS--GTPVDCVSLALSGALFSWS 154
VH+ +P V+ T+R + V ++ T EV+ GT VD + LA GAL+ W+
Sbjct: 375 VHIASPADGARVASAPTTVR--VRVGGTDVQSVTV-EVAQGGTVVDTLDLAYDGALW-WT 430
Query: 155 KP 156
P
Sbjct: 431 AP 432
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 97 VHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVS--GTPVDCVSLALSGALFSWS 154
VH+ +P V+ T+R + V ++ T EV+ GT VD + LA GAL+ W+
Sbjct: 375 VHIASPADGARVASAPTTVR--VRVGGTDVQSVTV-EVAQGGTVVDTLDLAYDGALW-WT 430
Query: 155 KP 156
P
Sbjct: 431 AP 432
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 100 CAPQSDKSVSGHSVTLRETIAVSSAEI 126
C P D S+ GH +T+ ET V S E+
Sbjct: 208 CDPNYDFSIDGHDMTIIETDGVDSQEL 234
>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
Length = 286
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 104 SDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLALSGALFSWSKPLLVISGI 163
DK ++ S+T+ +T+A + N + Y G P + SG +S K + +SG
Sbjct: 177 KDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSL-KHIQELSGD 235
Query: 164 N----RGSSCGHHMCCCRSQRGINLWCTFSVHIPK 194
N + ++ G + +G+ + CT P+
Sbjct: 236 NIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQ 270
>pdb|4G4F|A Chain A, Crystal Structure Of Gitrl From Bushbaby
Length = 126
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 89 LVREGLYNVH--VCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGT 137
++++GLY ++ V + K V+ +V LR+ A+ + +T Y+V GT
Sbjct: 39 ILQDGLYLIYGQVAPSTAYKGVAPFAVQLRKNEAMLQTLTSNSTIYDVGGT 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,761,585
Number of Sequences: 62578
Number of extensions: 158247
Number of successful extensions: 345
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 16
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)