Query 029120
Match_columns 198
No_of_seqs 177 out of 1089
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01975 SurE: Survival protei 100.0 1.9E-52 4E-57 352.3 12.1 126 67-196 1-130 (196)
2 PRK13932 stationary phase surv 100.0 2.2E-51 4.7E-56 359.4 14.4 127 64-196 3-130 (257)
3 TIGR00087 surE 5'/3'-nucleotid 100.0 3.4E-51 7.4E-56 354.9 13.8 124 67-196 1-125 (244)
4 PRK13935 stationary phase surv 100.0 9.9E-51 2.1E-55 354.6 14.0 124 67-196 1-125 (253)
5 PRK13933 stationary phase surv 100.0 1.5E-50 3.3E-55 353.1 14.0 124 67-196 1-126 (253)
6 PRK13931 stationary phase surv 100.0 1.6E-50 3.5E-55 354.1 13.9 124 67-196 1-126 (261)
7 PRK13934 stationary phase surv 100.0 2.1E-50 4.6E-55 354.9 13.7 123 67-196 1-124 (266)
8 PRK00346 surE 5'(3')-nucleotid 100.0 4.1E-50 8.9E-55 349.8 13.9 121 67-196 1-121 (250)
9 COG0496 SurE Predicted acid ph 100.0 7.9E-50 1.7E-54 349.1 12.6 122 67-196 1-122 (252)
10 PLN02846 digalactosyldiacylgly 87.6 4 8.6E-05 39.2 9.2 40 65-105 3-48 (462)
11 PF13439 Glyco_transf_4: Glyco 81.9 3.2 6.8E-05 31.0 4.7 42 69-111 1-46 (177)
12 cd03814 GT1_like_2 This family 81.3 18 0.0004 29.9 9.5 27 79-106 17-43 (364)
13 TIGR01133 murG undecaprenyldip 80.9 5.8 0.00013 34.0 6.5 35 68-103 2-37 (348)
14 PRK10307 putative glycosyl tra 77.7 4.3 9.3E-05 36.2 4.9 36 67-103 1-41 (412)
15 PLN02871 UDP-sulfoquinovose:DA 75.8 11 0.00024 34.7 7.2 41 63-105 55-102 (465)
16 cd03802 GT1_AviGT4_like This f 75.6 6.7 0.00014 32.8 5.3 39 67-106 1-48 (335)
17 cd03816 GT1_ALG1_like This fam 74.8 7.8 0.00017 35.3 5.9 38 64-103 3-40 (415)
18 cd03820 GT1_amsD_like This fam 72.8 31 0.00068 27.8 8.4 24 82-106 19-42 (348)
19 PRK00654 glgA glycogen synthas 71.5 22 0.00047 33.0 8.0 23 82-105 23-45 (466)
20 PRK06849 hypothetical protein; 64.8 11 0.00023 34.2 4.5 36 65-104 3-38 (389)
21 PF13579 Glyco_trans_4_4: Glyc 64.3 7.8 0.00017 28.3 3.0 26 81-107 6-31 (160)
22 cd03805 GT1_ALG2_like This fam 63.8 10 0.00022 33.0 4.0 37 67-104 1-40 (392)
23 cd03141 GATase1_Hsp31_like Typ 63.8 8.1 0.00018 32.8 3.3 32 74-106 17-48 (221)
24 cd03825 GT1_wcfI_like This fam 63.5 9 0.0002 32.2 3.5 38 67-105 1-41 (365)
25 PF03033 Glyco_transf_28: Glyc 61.9 9 0.00019 28.7 3.0 25 82-107 15-39 (139)
26 cd04962 GT1_like_5 This family 61.5 65 0.0014 27.4 8.5 34 70-104 6-39 (371)
27 COG0726 CDA1 Predicted xylanas 61.2 16 0.00035 29.7 4.5 37 66-102 64-101 (267)
28 PRK11780 isoprenoid biosynthes 61.1 12 0.00025 32.3 3.8 39 66-105 3-44 (217)
29 PRK08220 2,3-dihydroxybenzoate 60.5 52 0.0011 26.8 7.5 81 62-163 4-84 (252)
30 PF13477 Glyco_trans_4_2: Glyc 57.5 18 0.0004 26.9 4.0 33 69-105 3-35 (139)
31 cd03791 GT1_Glycogen_synthase_ 57.2 29 0.00063 31.6 5.9 24 82-106 22-45 (476)
32 cd06167 LabA_like LabA_like pr 56.3 21 0.00045 27.6 4.2 31 67-103 102-132 (149)
33 PRK00726 murG undecaprenyldiph 55.6 16 0.00034 31.9 3.8 37 67-104 2-39 (357)
34 PRK15405 ethanolamine utilizat 55.3 76 0.0016 28.2 7.9 103 80-188 46-202 (217)
35 PF00381 PTS-HPr: PTS HPr comp 52.9 14 0.00031 26.6 2.6 34 67-101 4-37 (84)
36 cd01482 vWA_collagen_alphaI-XI 51.7 27 0.00058 27.5 4.3 35 64-101 103-137 (164)
37 PLN02939 transferase, transfer 51.6 71 0.0015 34.0 8.3 41 64-105 479-526 (977)
38 PF14336 DUF4392: Domain of un 51.6 9.8 0.00021 34.3 1.9 34 80-114 63-96 (291)
39 cd03132 GATase1_catalase Type 51.1 48 0.001 25.4 5.5 44 67-113 4-47 (142)
40 cd03784 GT1_Gtf_like This fami 50.7 21 0.00046 31.6 3.9 39 67-106 1-40 (401)
41 PRK07856 short chain dehydroge 50.5 85 0.0018 25.8 7.2 38 63-105 3-41 (252)
42 PLN02316 synthase/transferase 49.4 89 0.0019 33.4 8.7 40 65-105 586-632 (1036)
43 cd01450 vWFA_subfamily_ECM Von 47.4 38 0.00082 25.4 4.3 36 63-101 102-139 (161)
44 cd01475 vWA_Matrilin VWA_Matri 47.2 30 0.00065 28.9 4.1 34 65-101 109-142 (224)
45 cd03817 GT1_UGDG_like This fam 46.2 35 0.00076 28.1 4.3 28 78-106 16-43 (374)
46 cd03135 GATase1_DJ-1 Type 1 gl 46.0 31 0.00067 26.6 3.7 31 75-106 7-37 (163)
47 PRK12767 carbamoyl phosphate s 44.8 36 0.00078 29.5 4.3 34 67-105 2-36 (326)
48 PF01205 UPF0029: Uncharacteri 44.7 30 0.00065 27.1 3.5 32 69-101 50-83 (110)
49 TIGR03449 mycothiol_MshA UDP-N 44.6 66 0.0014 28.3 6.0 24 80-104 24-47 (405)
50 cd03808 GT1_cap1E_like This fa 44.5 26 0.00057 28.4 3.2 37 70-107 4-40 (359)
51 PRK11249 katE hydroperoxidase 44.2 74 0.0016 32.8 7.0 40 65-105 596-635 (752)
52 PF07075 DUF1343: Protein of u 43.6 47 0.001 31.2 5.1 107 69-193 2-113 (365)
53 cd01476 VWA_integrin_invertebr 42.9 46 0.00099 25.7 4.3 34 66-102 105-139 (163)
54 KOG2749 mRNA cleavage and poly 41.8 58 0.0013 31.3 5.4 60 8-102 187-247 (415)
55 cd03794 GT1_wbuB_like This fam 40.7 55 0.0012 26.8 4.6 28 79-107 17-44 (394)
56 PRK06171 sorbitol-6-phosphate 40.4 2.1E+02 0.0046 23.6 8.3 76 64-161 7-83 (266)
57 PF01936 NYN: NYN domain; Int 40.2 26 0.00057 26.4 2.5 30 67-102 98-127 (146)
58 PRK11568 hypothetical protein; 40.0 38 0.00083 29.3 3.7 30 72-102 69-100 (204)
59 smart00775 LNS2 LNS2 domain. T 39.0 36 0.00077 27.5 3.2 22 76-98 26-47 (157)
60 PRK15415 propanediol utilizati 38.5 53 0.0012 29.8 4.5 56 133-189 185-243 (266)
61 PF08323 Glyco_transf_5: Starc 37.8 33 0.00071 29.5 3.0 22 82-104 22-43 (245)
62 cd01473 vWA_CTRP CTRP for CS 37.2 63 0.0014 26.7 4.5 34 65-101 109-146 (192)
63 TIGR00257 IMPACT_YIGZ uncharac 36.3 48 0.001 28.7 3.7 30 72-102 69-100 (204)
64 PRK14099 glycogen synthase; Pr 35.3 1E+02 0.0023 29.2 6.1 22 82-104 26-47 (485)
65 smart00368 LRR_RI Leucine rich 35.1 42 0.0009 19.7 2.3 26 65-90 2-27 (28)
66 PRK06843 inosine 5-monophospha 35.1 68 0.0015 30.6 4.8 104 81-197 153-262 (404)
67 TIGR01382 PfpI intracellular p 34.8 55 0.0012 25.5 3.6 31 74-105 7-37 (166)
68 cd03796 GT1_PIG-A_like This fa 34.3 63 0.0014 28.8 4.3 26 78-104 16-41 (398)
69 PTZ00441 sporozoite surface pr 34.2 54 0.0012 32.9 4.1 35 65-102 150-186 (576)
70 cd01472 vWA_collagen von Wille 34.1 74 0.0016 24.8 4.2 37 65-104 104-140 (164)
71 COG0429 Predicted hydrolase of 32.5 68 0.0015 30.3 4.3 35 63-100 72-110 (345)
72 TIGR01003 PTS_HPr_family Phosp 32.4 72 0.0016 23.1 3.6 75 66-148 3-79 (82)
73 TIGR01918 various_sel_PB selen 32.0 42 0.0009 32.5 2.9 39 153-196 74-112 (431)
74 TIGR01917 gly_red_sel_B glycin 31.7 42 0.00092 32.5 2.9 39 153-196 74-112 (431)
75 cd03134 GATase1_PfpI_like A ty 31.1 76 0.0016 24.7 3.8 29 74-103 7-35 (165)
76 cd03148 GATase1_EcHsp31_like T 31.0 83 0.0018 27.2 4.4 30 75-105 21-50 (232)
77 TIGR02095 glgA glycogen/starch 30.8 55 0.0012 30.2 3.4 24 82-106 23-46 (473)
78 cd03818 GT1_ExpC_like This fam 30.8 91 0.002 27.7 4.7 25 81-106 12-36 (396)
79 PF07355 GRDB: Glycine/sarcosi 30.3 46 0.001 31.4 2.8 53 137-196 64-116 (349)
80 PF04007 DUF354: Protein of un 30.3 64 0.0014 29.7 3.7 38 67-105 1-38 (335)
81 COG1926 Predicted phosphoribos 30.2 83 0.0018 28.0 4.2 42 69-111 127-169 (220)
82 cd01480 vWA_collagen_alpha_1-V 29.9 97 0.0021 25.0 4.4 37 63-102 108-148 (186)
83 PRK13782 phosphocarrier protei 29.7 73 0.0016 23.1 3.3 33 68-101 5-37 (82)
84 TIGR02764 spore_ybaN_pdaB poly 29.5 81 0.0018 25.5 3.9 30 65-94 4-33 (191)
85 PF11977 RNase_Zc3h12a: Zc3h12 29.4 36 0.00079 27.4 1.8 31 74-105 19-49 (155)
86 PHA03392 egt ecdysteroid UDP-g 29.2 51 0.0011 31.7 3.0 37 68-105 22-60 (507)
87 PRK08525 amidophosphoribosyltr 29.0 85 0.0018 29.9 4.4 39 65-104 339-378 (445)
88 cd03801 GT1_YqgM_like This fam 28.9 91 0.002 25.1 4.0 29 79-108 17-45 (374)
89 PF00201 UDPGT: UDP-glucoronos 28.8 27 0.00059 32.2 1.1 36 68-104 2-37 (500)
90 PRK05653 fabG 3-ketoacyl-(acyl 28.3 91 0.002 24.9 3.9 37 63-103 2-38 (246)
91 PTZ00075 Adenosylhomocysteinas 27.9 1.5E+02 0.0032 29.1 5.9 67 80-160 56-129 (476)
92 PLN00016 RNA-binding protein; 27.8 88 0.0019 28.0 4.1 39 65-104 51-90 (378)
93 PRK10610 chemotaxis regulatory 27.5 1.5E+02 0.0033 19.7 4.5 28 63-93 2-29 (129)
94 COG4567 Response regulator con 27.1 81 0.0017 27.2 3.5 29 68-100 11-39 (182)
95 cd03823 GT1_ExpE7_like This fa 27.1 80 0.0017 25.9 3.5 27 81-108 20-46 (359)
96 cd03785 GT1_MurG MurG is an N- 26.9 90 0.002 26.7 3.9 36 68-104 1-37 (350)
97 PF02441 Flavoprotein: Flavopr 26.7 1.1E+02 0.0023 23.6 3.9 35 68-103 2-36 (129)
98 COG2065 PyrR Pyrimidine operon 26.4 44 0.00095 28.8 1.8 23 171-194 103-126 (179)
99 PF00156 Pribosyltran: Phospho 26.1 85 0.0019 23.0 3.2 34 65-99 87-121 (125)
100 PF10841 DUF2644: Protein of u 25.8 26 0.00056 25.3 0.3 24 70-93 3-27 (60)
101 PRK09189 uroporphyrinogen-III 24.9 1.2E+02 0.0026 25.4 4.2 29 67-100 1-29 (240)
102 cd01458 vWA_ku Ku70/Ku80 N-ter 24.8 1.5E+02 0.0031 24.7 4.7 40 64-104 127-172 (218)
103 PRK02261 methylaspartate mutas 24.4 1.1E+02 0.0024 24.4 3.7 38 64-103 1-40 (137)
104 PRK07322 adenine phosphoribosy 24.3 1.4E+02 0.003 24.6 4.4 29 65-94 119-148 (178)
105 cd03811 GT1_WabH_like This fam 24.3 1.5E+02 0.0033 23.8 4.5 28 79-107 15-42 (353)
106 PRK09922 UDP-D-galactose:(gluc 24.1 1E+02 0.0023 27.0 3.8 38 67-105 1-44 (359)
107 PRK11574 oxidative-stress-resi 24.0 1.5E+02 0.0031 24.1 4.4 36 68-104 4-39 (196)
108 PRK05793 amidophosphoribosyltr 23.8 1.3E+02 0.0028 28.9 4.7 38 65-103 352-390 (469)
109 cd01477 vWA_F09G8-8_type VWA F 23.4 1.5E+02 0.0032 24.8 4.4 35 65-101 132-168 (193)
110 cd00367 PTS-HPr_like Histidine 23.3 1.4E+02 0.003 21.1 3.7 32 69-101 2-33 (77)
111 TIGR02873 spore_ylxY probable 22.8 1.8E+02 0.0039 25.8 5.0 34 61-94 79-112 (268)
112 PF06722 DUF1205: Protein of u 22.7 1.4E+02 0.0031 22.7 3.8 47 64-111 38-91 (97)
113 PRK12342 hypothetical protein; 22.4 1.8E+02 0.0039 25.9 5.0 51 136-196 91-141 (254)
114 PRK06398 aldose dehydrogenase; 22.2 4.6E+02 0.01 21.8 8.3 73 65-161 5-78 (258)
115 PRK06182 short chain dehydroge 22.1 1.6E+02 0.0035 24.5 4.5 78 66-161 3-80 (273)
116 PRK10850 PTS system phosphohis 22.0 1.2E+02 0.0026 22.4 3.2 76 67-150 4-81 (85)
117 TIGR02884 spore_pdaA delta-lac 21.8 2E+02 0.0044 24.3 5.0 31 64-94 34-64 (224)
118 PRK00934 ribose-phosphate pyro 21.7 1.9E+02 0.0042 25.6 5.1 40 61-101 199-239 (285)
119 PRK12367 short chain dehydroge 21.5 1.6E+02 0.0035 24.9 4.4 43 57-104 5-48 (245)
120 PRK05752 uroporphyrinogen-III 21.2 1.2E+02 0.0026 25.8 3.6 31 65-100 2-32 (255)
121 PRK03359 putative electron tra 21.1 2.1E+02 0.0045 25.5 5.1 51 136-196 94-144 (256)
122 PRK12446 undecaprenyldiphospho 21.1 2.1E+02 0.0045 25.9 5.2 21 79-101 16-36 (352)
123 PRK11388 DNA-binding transcrip 21.1 46 0.001 32.4 1.1 74 63-139 69-150 (638)
124 COG1925 FruB Phosphotransferas 20.7 1.6E+02 0.0035 22.2 3.8 78 66-150 3-81 (88)
125 TIGR01426 MGT glycosyltransfer 20.6 80 0.0017 28.1 2.4 24 82-106 12-35 (392)
126 TIGR00824 EIIA-man PTS system, 20.3 1.2E+02 0.0025 23.4 3.0 25 75-100 9-33 (116)
127 PRK13780 phosphocarrier protei 20.1 1.3E+02 0.0029 22.3 3.2 76 67-150 4-81 (88)
128 PRK14098 glycogen synthase; Pr 20.1 93 0.002 29.6 2.9 22 82-104 28-49 (489)
129 PRK13609 diacylglycerol glucos 20.0 1.7E+02 0.0036 25.8 4.3 41 65-106 3-45 (380)
130 cd04955 GT1_like_6 This family 20.0 1.3E+02 0.0028 25.3 3.4 24 81-105 20-43 (363)
No 1
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=1.9e-52 Score=352.34 Aligned_cols=126 Identities=43% Similarity=0.616 Sum_probs=107.9
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEee----eCCceeEEEcCchHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAE----INGATAYEVSGTPVDCV 142 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~----~~g~~~~~V~GTPaDCV 142 (198)
|||||||||||+||||++|+++|++.| |+|+||||++||||+||++|+++|+++++++ ..+.+.|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 899999999999999999999998887 8999999999999999999999999998875 34678999999999999
Q ss_pred HHHHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 143 ~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
++||+.+++ +.+|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 80 ~~al~~~~~-~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~G--ipaIA 130 (196)
T PF01975_consen 80 KLALDGLLP-DKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRG--IPAIA 130 (196)
T ss_dssp HHHHHCTST-TSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTT--SEEEE
T ss_pred HHHHHhhhc-cCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcC--CCeEE
Confidence 999999754 4579999999999999999999999999999999986 89998
No 2
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.2e-51 Score=359.40 Aligned_cols=127 Identities=36% Similarity=0.507 Sum_probs=118.0
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeC-CceeEEEcCchHHHH
Q 029120 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN-GATAYEVSGTPVDCV 142 (198)
Q Consensus 64 ~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~-g~~~~~V~GTPaDCV 142 (198)
.++|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++.. +..+|.|+|||+|||
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 356899999999999999999999999887 89999999999999999999999999998743 556799999999999
Q ss_pred HHHHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 143 SLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 143 ~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
++||.+++. .+|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 81 ~lal~~~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~G--iPsIA 130 (257)
T PRK13932 81 KVALSHILP--EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQG--IPSLA 130 (257)
T ss_pred HHHHHhhcC--CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcC--CCeEE
Confidence 999998653 589999999999999999999999999999999986 89997
No 3
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=3.4e-51 Score=354.95 Aligned_cols=124 Identities=39% Similarity=0.586 Sum_probs=116.6
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeee-CCceeEEEcCchHHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLA 145 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~-~g~~~~~V~GTPaDCV~la 145 (198)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++. ++.++|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 799999999999999999999999987 8999999999999999999999999999874 3557899999999999999
Q ss_pred HhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 146 LSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 146 L~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
|++++ .++|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 79 l~~l~--~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~G--ipaiA 125 (244)
T TIGR00087 79 INELM--PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHG--VPAIA 125 (244)
T ss_pred HHHhc--cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcC--CCeEE
Confidence 99865 3689999999999999999999999999999999986 99997
No 4
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=9.9e-51 Score=354.59 Aligned_cols=124 Identities=36% Similarity=0.557 Sum_probs=115.6
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeee-CCceeEEEcCchHHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLA 145 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~-~g~~~~~V~GTPaDCV~la 145 (198)
|||||||||||+||||++|+++|++. |+|+||||+++|||+||++|+++|+++++++. .+..+|+|+|||+|||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 79999999999999999999999864 59999999999999999999999999999874 3556899999999999999
Q ss_pred HhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 146 LSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 146 L~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
|++++ +++|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 79 l~~~~--~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~G--iPaiA 125 (253)
T PRK13935 79 YDVIM--DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMG--VPSIA 125 (253)
T ss_pred HHhhc--cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcC--CCeEE
Confidence 99865 4689999999999999999999999999999999985 89997
No 5
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.5e-50 Score=353.13 Aligned_cols=124 Identities=32% Similarity=0.532 Sum_probs=115.4
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeC--CceeEEEcCchHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEIN--GATAYEVSGTPVDCVSL 144 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~--g~~~~~V~GTPaDCV~l 144 (198)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++|+++++++.+ +.++|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 79999999999999999999999874 599999999999999999999999999998744 34679999999999999
Q ss_pred HHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 145 ALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 145 aL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
||++++ +.+|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 79 al~~l~--~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~G--iPsiA 126 (253)
T PRK13933 79 ALDKLV--PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYK--VPSIA 126 (253)
T ss_pred HHHHhc--CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcC--CCeEE
Confidence 999865 3689999999999999999999999999999999986 99997
No 6
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.6e-50 Score=354.15 Aligned_cols=124 Identities=27% Similarity=0.431 Sum_probs=113.9
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC--CCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREG--LYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSL 144 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G--~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV~l 144 (198)
|||||||||||+||||++|+++|++.. .++|+||||+++|||+||++|+++||++++++ ...|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~---~~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG---PRRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC---CCeEEEcCchHHHHHH
Confidence 789999999999999999999998851 14999999999999999999999999999875 2469999999999999
Q ss_pred HHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 145 ALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 145 aL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
||.+++ .+.+|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 78 al~~~~-~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~G--iPsiA 126 (261)
T PRK13931 78 ALYDVM-KDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQG--LPAIA 126 (261)
T ss_pred HHHHhc-CCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcC--CCeEE
Confidence 999865 34689999999999999999999999999999999986 89998
No 7
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.1e-50 Score=354.87 Aligned_cols=123 Identities=34% Similarity=0.480 Sum_probs=116.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV~laL 146 (198)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++..+.++|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 789999999999999999999999876 899999999999999999999999999987556778999999999999999
Q ss_pred hcccCCCCCCcEEEecCCCCCCCcCc-ccchhhHHHHHHHHHcCCCCCccc
Q 029120 147 SGALFSWSKPLLVISGINRGSSCGHH-MCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 147 ~~~l~~~~~PDLVISGIN~G~N~G~~-v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
+++ +.+|||||||||+|.|+|.+ ++||||||||+||+++| |||||
T Consensus 79 ~~l---~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~G--IPsIA 124 (266)
T PRK13934 79 YGL---GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLG--IPAVA 124 (266)
T ss_pred Hhc---cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcC--CCEEE
Confidence 874 46899999999999999999 89999999999999986 89998
No 8
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=4.1e-50 Score=349.77 Aligned_cols=121 Identities=39% Similarity=0.586 Sum_probs=113.7
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV~laL 146 (198)
|||||||||||+||||++|+++|++. |+|+||||+++|||+||++|+++|+++++++ ..+|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~---~~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALREL--ADVTVVAPDRERSGASHSLTLTRPLRVEKVD---NGFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhC--CCEEEEeCCCCCcCCcccccCCCCeEEEEec---CCeEEECCcHHHHHHHHH
Confidence 79999999999999999999999987 4999999999999999999999999999875 247999999999999999
Q ss_pred hcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 147 SGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 147 ~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
+.++. ++|||||||||+|.|+|.+++||||||||+||+++| |||||
T Consensus 76 ~~l~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~G--iPaiA 121 (250)
T PRK00346 76 NGLLD--PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLG--IPAIA 121 (250)
T ss_pred Hhhcc--CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcC--CCeEE
Confidence 98653 589999999999999999999999999999999986 89998
No 9
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=7.9e-50 Score=349.06 Aligned_cols=122 Identities=39% Similarity=0.590 Sum_probs=114.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLAL 146 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV~laL 146 (198)
|||||||||||+||||++|+++|+ .+ ++|+||||+.||||+||++|+.+|+++++++. ..|+|+|||+|||.+||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~---~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-EG-ADVTVVAPDREQSGASHSLTLHEPLRVRQVDN---GAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-hC-CCEEEEccCCCCcccccccccccCceeeEecc---ceEEecCChHHHHHHHH
Confidence 899999999999999999999999 44 69999999999999999999999999999863 67999999999999999
Q ss_pred hcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 147 SGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 147 ~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
+.++ +...|||||||||.|.|+|.+++|||||||||||+++| |||||
T Consensus 76 ~~l~-~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~G--ipsIA 122 (252)
T COG0496 76 NELL-KEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLG--IPAIA 122 (252)
T ss_pred HHhc-cCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcC--cccee
Confidence 9865 33569999999999999999999999999999999997 89998
No 10
>PLN02846 digalactosyldiacylglycerol synthase
Probab=87.61 E-value=4 Score=39.18 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=29.5
Q ss_pred CCCeEEEecC------CCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 65 SKPVLLVTNG------DGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 65 ~~~~ILlTND------DGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
++|||+|.=| .|. +--+..+++.|.+.|.|+|+||+|+..
T Consensus 3 ~~mrIaivTdt~lP~vnGv-a~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGT-AVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCEEEEEEcCCCCCCCCe-eccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 4689888766 344 234566677999999669999999764
No 11
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=81.94 E-value=3.2 Score=31.01 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=28.1
Q ss_pred EEEecCCCCCCcc----HHHHHHHHHhcCCCcEEEEecCCCCccccc
Q 029120 69 LLVTNGDGIESPG----LVYLVEALVREGLYNVHVCAPQSDKSVSGH 111 (198)
Q Consensus 69 ILlTNDDGi~spG----I~aL~~aL~~~G~~dV~VvAP~~~qSg~g~ 111 (198)
|||+|.-....-| +..|+++|.+.| |+|+|++|.....-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 6778777766555 567888999999 89999998866554444
No 12
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=81.26 E-value=18 Score=29.87 Aligned_cols=27 Identities=37% Similarity=0.327 Sum_probs=23.1
Q ss_pred CccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 79 SPGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 79 spGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
...+..|+++|.+.| |+|.++.+....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~ 43 (364)
T cd03814 17 VRTLQRLVEHLRARG-HEVLVIAPGPFR 43 (364)
T ss_pred ehHHHHHHHHHHHCC-CEEEEEeCCchh
Confidence 357889999999999 899999987654
No 13
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=80.85 E-value=5.8 Score=34.01 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.6
Q ss_pred eEEEe-cCCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 68 VLLVT-NGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 68 ~ILlT-NDDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
+|+++ =..|-+.-....|+++|++.| |+|+|+.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~ 37 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTK 37 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCC
Confidence 45554 444444444458999999999 899999864
No 14
>PRK10307 putative glycosyl transferase; Provisional
Probab=77.66 E-value=4.3 Score=36.21 Aligned_cols=36 Identities=19% Similarity=0.043 Sum_probs=28.0
Q ss_pred CeEEEecCCCCCC-----ccHHHHHHHHHhcCCCcEEEEecC
Q 029120 67 PVLLVTNGDGIES-----PGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 67 ~~ILlTNDDGi~s-----pGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
||||+.++.-.-- .-+..|++.|.+.| |+|+|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 6888888754211 23788999999999 899999976
No 15
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=75.84 E-value=11 Score=34.71 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=30.8
Q ss_pred CCCCCeEEEecC-C------CCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 63 DSSKPVLLVTNG-D------GIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 63 ~~~~~~ILlTND-D------Gi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
..++|||++.-+ . |++ .-+..|.+.|++.| |+|+|+.+...
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~-~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYK-NRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred cCCCceEEEEECCcCCcccccHH-HHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 377899998755 2 222 34778889999999 89999998754
No 16
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=75.63 E-value=6.7 Score=32.78 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=29.5
Q ss_pred CeEEEecCCCCC----C-----ccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 67 PVLLVTNGDGIE----S-----PGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 67 ~~ILlTNDDGi~----s-----pGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
|+||+..+.-+. . --+..|+++|.+.| |+|+|+.|....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCC
Confidence 688888775321 1 12788999999999 899999987654
No 17
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=74.80 E-value=7.8 Score=35.30 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 64 ~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
-++..||.++|=|.+ +=+.-+++.|.+.| |+|+|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~-~R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 3 RKRVCVLVLGDIGRS-PRMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred ccEEEEEEecccCCC-HHHHHHHHHHHhcC-ceEEEEEec
Confidence 456789999886665 45667899999999 899999764
No 18
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=72.76 E-value=31 Score=27.82 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
+..|+++|.+.| |+|.++.+....
T Consensus 19 ~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 19 LSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred HHHHHHHHHhCC-CeEEEEecCCCC
Confidence 556788888888 899999987765
No 19
>PRK00654 glgA glycogen synthase; Provisional
Probab=71.48 E-value=22 Score=33.03 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
+..|.++|.+.| |+|.|+.|...
T Consensus 23 v~~L~~~L~~~G-~~V~v~~p~y~ 45 (466)
T PRK00654 23 VGALPKALAALG-HDVRVLLPGYP 45 (466)
T ss_pred HHHHHHHHHHCC-CcEEEEecCCc
Confidence 688999999999 89999999864
No 20
>PRK06849 hypothetical protein; Provisional
Probab=64.83 E-value=11 Score=34.21 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.5
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
.+++|||| |-..+--..++++|.++| ++|+++....
T Consensus 3 ~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLIT---GARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 46899999 555554566789999999 8999986553
No 21
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=64.27 E-value=7.8 Score=28.34 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=19.2
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCCc
Q 029120 81 GLVYLVEALVREGLYNVHVCAPQSDKS 107 (198)
Q Consensus 81 GI~aL~~aL~~~G~~dV~VvAP~~~qS 107 (198)
-+..|+++|.+.| |+|.|++|.....
T Consensus 6 ~~~~l~~~L~~~G-~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 6 YVRELARALAARG-HEVTVVTPQPDPE 31 (160)
T ss_dssp HHHHHHHHHHHTT--EEEEEEE---GG
T ss_pred HHHHHHHHHHHCC-CEEEEEecCCCCc
Confidence 3678999999999 8999999877665
No 22
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=63.85 E-value=10 Score=32.97 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=26.7
Q ss_pred CeEEEec-CCCCC--CccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 67 PVLLVTN-GDGIE--SPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 67 ~~ILlTN-DDGi~--spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
|+||+.. +.++. ..-+..|+++|.+.| |+|.|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 5666654 44432 235788999999999 8999999854
No 23
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=63.76 E-value=8.1 Score=32.75 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.7
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 74 DDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
++|.+-.=+..-++.|.++| ++|.++.|....
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred cCccCHHHHHHHHHHHHHCC-CeEEEECCCCCC
Confidence 45555555667789999999 899999997654
No 24
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=63.46 E-value=9 Score=32.23 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=27.9
Q ss_pred CeEEEecCCCC-C--CccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 67 PVLLVTNGDGI-E--SPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 67 ~~ILlTNDDGi-~--spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
|+||+.|+... . .--...|.++|.+.| |+|+|+.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 67777765522 2 234677889999999 89999998765
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=61.93 E-value=9 Score=28.74 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCCc
Q 029120 82 LVYLVEALVREGLYNVHVCAPQSDKS 107 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~~qS 107 (198)
..+|.++|++.| |+|.++++..-+.
T Consensus 15 ~lala~~L~~rG-h~V~~~~~~~~~~ 39 (139)
T PF03033_consen 15 FLALARALRRRG-HEVRLATPPDFRE 39 (139)
T ss_dssp HHHHHHHHHHTT--EEEEEETGGGHH
T ss_pred HHHHHHHHhccC-CeEEEeeccccee
Confidence 347999999999 9999998866443
No 26
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=61.45 E-value=65 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=25.9
Q ss_pred EEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 70 LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 70 LlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
+.+++-|=...-+..|++.|.+.| |+|.|+....
T Consensus 6 ~~~p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~ 39 (371)
T cd04962 6 VCYPTYGGSGVVATELGKALARRG-HEVHFITSSR 39 (371)
T ss_pred EEEeCCCCccchHHHHHHHHHhcC-CceEEEecCC
Confidence 334455545567899999999999 8999998754
No 27
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=61.21 E-value=16 Score=29.67 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCC-cEEEEec
Q 029120 66 KPVLLVTNGDGIESPGLVYLVEALVREGLY-NVHVCAP 102 (198)
Q Consensus 66 ~~~ILlTNDDGi~spGI~aL~~aL~~~G~~-dV~VvAP 102 (198)
+..|.||-|||+...+...+.+.|++.+.. ..+|+..
T Consensus 64 ~k~v~lTFDDg~~~~~~~~il~iL~k~~i~ATfFv~g~ 101 (267)
T COG0726 64 GKAVALTFDDGPLDGNTPRILPLLKKYGIKATFFVVGS 101 (267)
T ss_pred CCeEEEEeecCCCCCCcHHHHHHHHHcCCceEEEEehH
Confidence 367999999999988999999999998854 4444443
No 28
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=61.14 E-value=12 Score=32.30 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCeEEEec---CCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 66 KPVLLVTN---GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 66 ~~~ILlTN---DDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
+.-||+++ =||++-.=+..-+++|+++| ++|.+++|...
T Consensus 3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG-~~V~~aSp~~~ 44 (217)
T PRK11780 3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAG-AEAVCFAPDIP 44 (217)
T ss_pred EEEEEEccCCCCCCEehhHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 44466663 14777677777889999999 89999999764
No 29
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=60.47 E-value=52 Score=26.81 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=47.9
Q ss_pred CCCCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHH
Q 029120 62 VDSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDC 141 (198)
Q Consensus 62 ~~~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDC 141 (198)
++.+..+||||--.|. -| +.+++.|.+.| ++|+++.... + .... .....|.+|=+-.+.
T Consensus 4 ~~~~~k~vlItGas~~--iG-~~la~~l~~~G-~~v~~~~~~~--------~------~~~~---~~~~~~~~D~~~~~~ 62 (252)
T PRK08220 4 MDFSGKTVWVTGAAQG--IG-YAVALAFVEAG-AKVIGFDQAF--------L------TQED---YPFATFVLDVSDAAA 62 (252)
T ss_pred cCCCCCEEEEeCCCch--HH-HHHHHHHHHCC-CEEEEEecch--------h------hhcC---CceEEEEecCCCHHH
Confidence 3455678999954431 23 34677788888 7888886543 0 0000 012346677676677
Q ss_pred HHHHHhcccCCCCCCcEEEecC
Q 029120 142 VSLALSGALFSWSKPLLVISGI 163 (198)
Q Consensus 142 V~laL~~~l~~~~~PDLVISGI 163 (198)
+.-.++.+.....++|+||.-.
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~a 84 (252)
T PRK08220 63 VAQVCQRLLAETGPLDVLVNAA 84 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 7777765533335789998743
No 30
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=57.51 E-value=18 Score=26.88 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=26.6
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 69 ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
++|+|.+. +-+.-+++.|++.| ++|+|+++..+
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~ 35 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRND 35 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCC
Confidence 56778773 46888999999999 89999999444
No 31
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=57.18 E-value=29 Score=31.58 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
+..|.++|.+.| |+|.|+.|.-.+
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~ 45 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGR 45 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcc
Confidence 578899999999 999999997664
No 32
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=56.31 E-value=21 Score=27.56 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=24.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
.-||+|.|- .+..+.+.|++.| .+|+|+++.
T Consensus 102 ~ivLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 358888765 5556778888889 699999998
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=55.56 E-value=16 Score=31.88 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=29.5
Q ss_pred CeEEEe-cCCCCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 67 PVLLVT-NGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 67 ~~ILlT-NDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
||||++ +-.|-+.-....|+++|++.| |+|+|+....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 778887 666765556678999999999 8999998754
No 34
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=55.31 E-value=76 Score=28.15 Aligned_cols=103 Identities=22% Similarity=0.145 Sum_probs=69.2
Q ss_pred ccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCC--CC--------------------------eEEEEe------e
Q 029120 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLR--ET--------------------------IAVSSA------E 125 (198)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~--~p--------------------------l~v~~v------~ 125 (198)
++|.++=+++|.. +|-|+-+.+-+-|.||+-|-- +- +.+... +
T Consensus 46 ~~i~AaDeA~KAA---nVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQA---MVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhhc---ceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 8999987777764 799999999999999987311 10 000000 0
Q ss_pred e-------------------CCceeEEEcCchHHHHHHHHhcccCCCCCCcEE-EecCCCCCCCcCcccchhhHHHHHHH
Q 029120 126 I-------------------NGATAYEVSGTPVDCVSLALSGALFSWSKPLLV-ISGINRGSSCGHHMCCCRSQRGINLW 185 (198)
Q Consensus 126 ~-------------------~g~~~~~V~GTPaDCV~laL~~~l~~~~~PDLV-ISGIN~G~N~G~~v~ySGTVgAA~EA 185 (198)
+ .|...=++=|-| ---.++++..++. -..++| ..|+..|.|.|. .+.||+-+|.+.|
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G~a~~~li~~P-~~~~~~~D~AlKa-A~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~A 199 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPP-LEAMYGIDAALKA-ADVQLVTFVGPPSETNFGG-ALLTGSQSACKAA 199 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCCceeEEEecCc-HHHHHHHHHHHhh-cCceEEEEeCCCCCceecC-eeEEeCHHHHHHH
Confidence 0 121111345788 4456677776643 467885 899999998888 7789999988888
Q ss_pred HHc
Q 029120 186 CTF 188 (198)
Q Consensus 186 a~~ 188 (198)
+.-
T Consensus 200 ~~a 202 (217)
T PRK15405 200 CNA 202 (217)
T ss_pred HHH
Confidence 764
No 35
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=52.90 E-value=14 Score=26.63 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=29.2
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvA 101 (198)
-.+.|+|+.|+++.-...|++..++.. ++|++..
T Consensus 4 ~~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~~ 37 (84)
T PF00381_consen 4 REVTIKNPNGLHARPAAELVQIASKFD-SDITIRK 37 (84)
T ss_dssp EEEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEEE
T ss_pred EEEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEEe
Confidence 468899999999999999999999886 6888773
No 36
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=51.67 E-value=27 Score=27.48 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 029120 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 64 ~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvA 101 (198)
.++.-||+| ||.....+...++.|++.| -++++|+
T Consensus 103 ~~k~iillT--DG~~~~~~~~~a~~lk~~g-i~i~~ig 137 (164)
T cd01482 103 VPKVVILIT--DGKSQDDVELPARVLRNLG-VNVFAVG 137 (164)
T ss_pred CCEEEEEEc--CCCCCchHHHHHHHHHHCC-CEEEEEe
Confidence 455668888 8887777878889999988 4777764
No 37
>PLN02939 transferase, transferring glycosyl groups
Probab=51.60 E-value=71 Score=33.97 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCCeEEEecCCC---CCCcc----HHHHHHHHHhcCCCcEEEEecCCC
Q 029120 64 SSKPVLLVTNGDG---IESPG----LVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 64 ~~~~~ILlTNDDG---i~spG----I~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
..+|+||..-=-= ...=| +.+|-++|.+.| |+|.|+.|.-.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G-hdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG-HLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC-CeEEEEeCCCc
Confidence 4678888763221 11222 578889999999 89999999664
No 38
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=51.57 E-value=9.8 Score=34.25 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHhcCCCcEEEEecCCCCcccccccC
Q 029120 80 PGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVT 114 (198)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siT 114 (198)
||-.+|+++|+..| .+|++|..+.........+.
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~~ 96 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAVR 96 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHHH
Confidence 79999999999999 69999999888777776543
No 39
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=51.13 E-value=48 Score=25.38 Aligned_cols=44 Identities=34% Similarity=0.422 Sum_probs=33.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCccccccc
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSV 113 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~si 113 (198)
.-||+. ||...-.+..+++.|+.+| ++|.++.|....--+.+.+
T Consensus 4 v~ill~--~g~~~~e~~~~~~~~~~a~-~~v~vvs~~~~~v~s~~g~ 47 (142)
T cd03132 4 VGILVA--DGVDAAELSALKAALKAAG-ANVKVVAPTLGGVVDSDGK 47 (142)
T ss_pred EEEEEc--CCcCHHHHHHHHHHHHHCC-CEEEEEecCcCceecCCCc
Confidence 345665 6788889999999999998 7999999987643333333
No 40
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=50.65 E-value=21 Score=31.58 Aligned_cols=39 Identities=28% Similarity=0.227 Sum_probs=28.0
Q ss_pred CeEEEecCCCC-CCccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 67 PVLLVTNGDGI-ESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 67 ~~ILlTNDDGi-~spGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
||||++.=-+. +.--+..|+++|++.| |+|.++++..-+
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~~ 40 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEFA 40 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhHH
Confidence 67888643322 2233668999999999 999999998643
No 41
>PRK07856 short chain dehydrogenase; Provisional
Probab=50.52 E-value=85 Score=25.84 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=25.8
Q ss_pred CCCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEecCCC
Q 029120 63 DSSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi~spGI-~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
+.+..++|||=-- -|| +++++.|.+.| ++|+++....+
T Consensus 3 ~~~~k~~lItGas----~gIG~~la~~l~~~g-~~v~~~~r~~~ 41 (252)
T PRK07856 3 DLTGRVVLVTGGT----RGIGAGIARAFLAAG-ATVVVCGRRAP 41 (252)
T ss_pred CCCCCEEEEeCCC----chHHHHHHHHHHHCC-CEEEEEeCChh
Confidence 3455779998332 344 45788888888 78988876543
No 42
>PLN02316 synthase/transferase
Probab=49.42 E-value=89 Score=33.39 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCCeEEEecCCC-C-C-C----ccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 65 SKPVLLVTNGDG-I-E-S----PGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 65 ~~~~ILlTNDDG-i-~-s----pGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
..|+||..--.- . . . .-+.+|.++|.+.| |+|.|+.|.-.
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G-h~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN-HNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC-CEEEEEecCCc
Confidence 448887653332 1 1 1 12588999999999 89999999875
No 43
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=47.43 E-value=38 Score=25.35 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCCCCeEEEecCCCCCCcc--HHHHHHHHHhcCCCcEEEEe
Q 029120 63 DSSKPVLLVTNGDGIESPG--LVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi~spG--I~aL~~aL~~~G~~dV~VvA 101 (198)
..++.-||+| ||....+ +..+++.|++.+ .+|+++.
T Consensus 102 ~~~~~iiliT--DG~~~~~~~~~~~~~~~~~~~-v~v~~i~ 139 (161)
T cd01450 102 NVPKVIIVLT--DGRSDDGGDPKEAAAKLKDEG-IKVFVVG 139 (161)
T ss_pred CCCeEEEEEC--CCCCCCCcchHHHHHHHHHCC-CEEEEEe
Confidence 3455668888 6655444 888899999887 5777663
No 44
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=47.15 E-value=30 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.8
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvA 101 (198)
+++-|||| ||.....+...++.|++.| -.|++|+
T Consensus 109 ~kvvillT--DG~s~~~~~~~a~~lk~~g-v~i~~Vg 142 (224)
T cd01475 109 PRVGIVVT--DGRPQDDVSEVAAKARALG-IEMFAVG 142 (224)
T ss_pred CeEEEEEc--CCCCcccHHHHHHHHHHCC-cEEEEEe
Confidence 45568888 8877677888899999998 4777775
No 45
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=46.23 E-value=35 Score=28.05 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 78 ESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 78 ~spGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
.+--++.|+++|.+.| |+|+++.+....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 16 VATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred eehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 4556888999999999 899999987643
No 46
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=45.95 E-value=31 Score=26.59 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCCCCccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 75 DGIESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 75 DGi~spGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
||+.--.+..+++.|+.++ ++|.+++|...+
T Consensus 7 ~gf~~~e~~~~~~~~~~a~-~~v~~vs~~~~~ 37 (163)
T cd03135 7 DGFEEIEAVTPVDVLRRAG-IEVTTASLEKKL 37 (163)
T ss_pred CCcchHHHHHHHHHHHHCC-CEEEEEEcCCCc
Confidence 7788888889999999999 799999998765
No 47
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=44.77 E-value=36 Score=29.50 Aligned_cols=34 Identities=24% Similarity=0.058 Sum_probs=24.4
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC-CCcEEEEecCCC
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREG-LYNVHVCAPQSD 105 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G-~~dV~VvAP~~~ 105 (198)
|+||||+-. .++ .++++|+++| .++|+++-+...
T Consensus 2 ~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAG----RRV-QLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCCCc
Confidence 789999773 334 7788898885 267887766543
No 48
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=44.73 E-value=30 Score=27.15 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEEecCCCCCC--ccHHHHHHHHHhcCCCcEEEEe
Q 029120 69 LLVTNGDGIES--PGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 69 ILlTNDDGi~s--pGI~aL~~aL~~~G~~dV~VvA 101 (198)
+-=.+|||-.+ .|...| +.|...+..+|.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44578999877 999877 899998888887664
No 49
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=44.58 E-value=66 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 80 PGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
-.+..|+++|.+.| |+|+|+++..
T Consensus 24 ~~v~~la~~L~~~G-~~V~v~~~~~ 47 (405)
T TIGR03449 24 VYILETATELARRG-IEVDIFTRAT 47 (405)
T ss_pred ehHHHHHHHHhhCC-CEEEEEeccc
Confidence 45889999999999 8999999864
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=44.45 E-value=26 Score=28.40 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=28.0
Q ss_pred EEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCc
Q 029120 70 LVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (198)
Q Consensus 70 LlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qS 107 (198)
+|++-.|-...-+..|+++|.+.| |+|+++.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 444444545567888999999988 8999999886654
No 51
>PRK11249 katE hydroperoxidase II; Provisional
Probab=44.24 E-value=74 Score=32.81 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
+..+|.|-=.||.+...+..++++|.++| ..|.||+|...
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~G 635 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRMG 635 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCCC
Confidence 44455555568999999999999999999 69999999763
No 52
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.59 E-value=47 Score=31.25 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred EEEecCCCCCCccHHHHHHHHHhc-CCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCc---hHHHHHH
Q 029120 69 LLVTNGDGIESPGLVYLVEALVRE-GLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGT---PVDCVSL 144 (198)
Q Consensus 69 ILlTNDDGi~spGI~aL~~aL~~~-G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GT---PaDCV~l 144 (198)
-||||-=|+.+.+ +..++.|.+. |..=+.+.+|++---|...+-. .+.-..-...|..+|..-|. |.....-
T Consensus 2 gLvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~---~v~~~~D~~tglpVySLYG~~~~Pt~~mL~ 77 (365)
T PF07075_consen 2 GLVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGE---KVEDYIDPRTGLPVYSLYGKTRKPTPEMLK 77 (365)
T ss_pred EEEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCC---cCCCCcCCCCCCeEEECCCCCCCCCHHHHh
Confidence 4899999999766 5556888887 5555678899987766655411 11111111135667766555 7766655
Q ss_pred HHhcccCCCCCCcEEEecCCCCCCCcCc-ccchhhHHHHHHHHHcCCCCC
Q 029120 145 ALSGALFSWSKPLLVISGINRGSSCGHH-MCCCRSQRGINLWCTFSVHIP 193 (198)
Q Consensus 145 aL~~~l~~~~~PDLVISGIN~G~N~G~~-v~ySGTVgAA~EAa~~G~~iP 193 (198)
+++.++| || +.+|.- ..|=-|++=+||||-. .++|
T Consensus 78 ~vDvlvf-----Di--------QDvG~R~YTYi~Tl~~~MeAaa~-~g~~ 113 (365)
T PF07075_consen 78 GVDVLVF-----DI--------QDVGVRFYTYISTLYYVMEAAAE-NGKP 113 (365)
T ss_pred CCCEEEE-----eC--------ccCCchHHHHHHHHHHHHHHHHH-hCCe
Confidence 6655443 22 456764 5688899999999864 4555
No 53
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=42.89 E-value=46 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=24.4
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHh-cCCCcEEEEec
Q 029120 66 KPVLLVTNGDGIESPGLVYLVEALVR-EGLYNVHVCAP 102 (198)
Q Consensus 66 ~~~ILlTNDDGi~spGI~aL~~aL~~-~G~~dV~VvAP 102 (198)
+.-||+| ||....+...+++.|++ .| ..|+.|.-
T Consensus 105 ~~villT--DG~~~~~~~~~~~~l~~~~~-v~v~~vg~ 139 (163)
T cd01476 105 KVVVVLT--DGRSHDDPEKQARILRAVPN-IETFAVGT 139 (163)
T ss_pred eEEEEEC--CCCCCCchHHHHHHHhhcCC-CEEEEEEC
Confidence 5568888 67766777888888988 66 46666654
No 54
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=41.75 E-value=58 Score=31.35 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=41.9
Q ss_pred CCChhhhhhHHHHHHhhcCCCCCCCCCCCCCCCCccchhhccCCCCCCCCCCCCCCCCCCeEEEecCCCC-CCccHHHHH
Q 029120 8 LMPPGLVSNLEQVLLNKKKKSKDNDDDGDDGTSKQSNEEANESTEPSTSDSTENVDSSKPVLLVTNGDGI-ESPGLVYLV 86 (198)
Q Consensus 8 ~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILlTNDDGi-~spGI~aL~ 86 (198)
-|=-.++|-|++||..|-..++ . .+... .|.|+-|| +..|..+|+
T Consensus 187 ~LY~~~~s~La~v~~~~~~~n~--------~-----------------------ar~sG---~iInT~g~i~~egy~~ll 232 (415)
T KOG2749|consen 187 ELYKALVSELAEVLKQRLSLNP--------E-----------------------ARVSG---CIINTCGWIEGEGYAALL 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccCc--------h-----------------------hcccc---eEEeccceeccccHHHHH
Confidence 3456789999999988875331 0 02233 34688997 678999999
Q ss_pred HHHHhcCCCcEEEEec
Q 029120 87 EALVREGLYNVHVCAP 102 (198)
Q Consensus 87 ~aL~~~G~~dV~VvAP 102 (198)
.++++.. .+|++|.=
T Consensus 233 hai~~f~-v~vviVLg 247 (415)
T KOG2749|consen 233 HAIKAFE-VDVVIVLG 247 (415)
T ss_pred HHHHHcC-ccEEEEec
Confidence 9998887 46666653
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=40.75 E-value=55 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=22.3
Q ss_pred CccHHHHHHHHHhcCCCcEEEEecCCCCc
Q 029120 79 SPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (198)
Q Consensus 79 spGI~aL~~aL~~~G~~dV~VvAP~~~qS 107 (198)
..-+..|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNYP 44 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCcc
Confidence 345888999999999 8999999865433
No 56
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=40.39 E-value=2.1e+02 Score=23.61 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=45.0
Q ss_pred CCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHH
Q 029120 64 SSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCV 142 (198)
Q Consensus 64 ~~~~~ILlTNDDGi~spGI-~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV 142 (198)
.+...+|||--.| || +++++.|.+.| ++|+++....++-. . .....+.+|=+--+++
T Consensus 7 l~~k~vlItG~s~----gIG~~la~~l~~~G-~~v~~~~~~~~~~~--------~---------~~~~~~~~D~~~~~~~ 64 (266)
T PRK06171 7 LQGKIIIVTGGSS----GIGLAIVKELLANG-ANVVNADIHGGDGQ--------H---------ENYQFVPTDVSSAEEV 64 (266)
T ss_pred CCCCEEEEeCCCC----hHHHHHHHHHHHCC-CEEEEEeCCccccc--------c---------CceEEEEccCCCHHHH
Confidence 4456799995332 44 45788898888 78888754432210 0 0123455665655666
Q ss_pred HHHHhcccCCCCCCcEEEe
Q 029120 143 SLALSGALFSWSKPLLVIS 161 (198)
Q Consensus 143 ~laL~~~l~~~~~PDLVIS 161 (198)
.-.+..+.....++|.||.
T Consensus 65 ~~~~~~~~~~~g~id~li~ 83 (266)
T PRK06171 65 NHTVAEIIEKFGRIDGLVN 83 (266)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 6666554322357899886
No 57
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=40.20 E-value=26 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=18.2
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEec
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAP 102 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP 102 (198)
.-||+|.|. -+..+++.|++.| .+|+|+..
T Consensus 98 ~ivLvSgD~-----Df~~~v~~l~~~g-~~V~v~~~ 127 (146)
T PF01936_consen 98 TIVLVSGDS-----DFAPLVRKLRERG-KRVIVVGA 127 (146)
T ss_dssp EEEEE---G-----GGHHHHHHHHHH---EEEEEE-
T ss_pred EEEEEECcH-----HHHHHHHHHHHcC-CEEEEEEe
Confidence 458888883 3566778888899 68999984
No 58
>PRK11568 hypothetical protein; Provisional
Probab=40.01 E-value=38 Score=29.28 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=24.9
Q ss_pred ecCCCCCC--ccHHHHHHHHHhcCCCcEEEEec
Q 029120 72 TNGDGIES--PGLVYLVEALVREGLYNVHVCAP 102 (198)
Q Consensus 72 TNDDGi~s--pGI~aL~~aL~~~G~~dV~VvAP 102 (198)
.||||--+ .|...| +.|+..++.+|.||.=
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vVVt 100 (204)
T PRK11568 69 FSDDGEPAGTAGKPML-AQLMGSGVGEITAVVV 100 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCccEEEEEE
Confidence 79999854 998876 8899999889888764
No 59
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=38.96 E-value=36 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.1
Q ss_pred CCCCccHHHHHHHHHhcCCCcEE
Q 029120 76 GIESPGLVYLVEALVREGLYNVH 98 (198)
Q Consensus 76 Gi~spGI~aL~~aL~~~G~~dV~ 98 (198)
.+-.||...++++|++.| +.++
T Consensus 26 ~~~~~~~~~a~~~l~~~G-~~iv 47 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG-YKIL 47 (157)
T ss_pred CcCCHHHHHHHHHHHHcC-CeEE
Confidence 378999999999999999 4443
No 60
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=38.52 E-value=53 Score=29.83 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=45.6
Q ss_pred EEcCchHHHHHHHHhcccCCCCCCcEE-EecCCCCCCCcCc--ccchhhHHHHHHHHHcC
Q 029120 133 EVSGTPVDCVSLALSGALFSWSKPLLV-ISGINRGSSCGHH--MCCCRSQRGINLWCTFS 189 (198)
Q Consensus 133 ~V~GTPaDCV~laL~~~l~~~~~PDLV-ISGIN~G~N~G~~--v~ySGTVgAA~EAa~~G 189 (198)
.+-+.|+-.-..+.+..++. -..+|+ +..|..|.++|-- ++.+|.++|.++|+..+
T Consensus 185 iie~~p~a~gi~aaD~AlKa-A~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~Aa 243 (266)
T PRK15415 185 IIVGAPAGIGVVMADTALKS-ANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVIAA 243 (266)
T ss_pred EEEcCcHHHHHHHHHHHHhh-cCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHHHH
Confidence 56899999889999987753 568988 7788999998876 55799999988887654
No 61
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=37.79 E-value=33 Score=29.49 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
...|.++|.+.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 567899999999 8999999976
No 62
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=37.24 E-value=63 Score=26.74 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCCCC----ccHHHHHHHHHhcCCCcEEEEe
Q 029120 65 SKPVLLVTNGDGIES----PGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 65 ~~~~ILlTNDDGi~s----pGI~aL~~aL~~~G~~dV~VvA 101 (198)
.+.-|||| ||... ..+...++.|++.| -.|+++.
T Consensus 109 ~kv~IllT--DG~s~~~~~~~~~~~a~~lk~~g-V~i~~vG 146 (192)
T cd01473 109 PKVTMLFT--DGNDTSASKKELQDISLLYKEEN-VKLLVVG 146 (192)
T ss_pred CeEEEEEe--cCCCCCcchhhHHHHHHHHHHCC-CEEEEEE
Confidence 56679999 77754 35777788899999 4777763
No 63
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=36.34 E-value=48 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.6
Q ss_pred ecCCCCC--CccHHHHHHHHHhcCCCcEEEEec
Q 029120 72 TNGDGIE--SPGLVYLVEALVREGLYNVHVCAP 102 (198)
Q Consensus 72 TNDDGi~--spGI~aL~~aL~~~G~~dV~VvAP 102 (198)
.||||-- +.|...| +.|+..++.+|.||.=
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vVVt 100 (204)
T TIGR00257 69 FSDDGEPAGTAGKPML-SVLRGSDLGDIGAVVV 100 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCCcEEEEEE
Confidence 7999985 4898876 8899999888888763
No 64
>PRK14099 glycogen synthase; Provisional
Probab=35.34 E-value=1e+02 Score=29.19 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCcEEEEecCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
+.+|-++|++.| |+|.|+.|.-
T Consensus 26 ~~~lp~~l~~~g-~~v~v~~P~y 47 (485)
T PRK14099 26 AGALPAALKAHG-VEVRTLVPGY 47 (485)
T ss_pred HHHHHHHHHHCC-CcEEEEeCCC
Confidence 578889999999 8999999954
No 65
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.13 E-value=42 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHH
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALV 90 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~ 90 (198)
..++.|=-+|-.+...|..+|.++|+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 35677777889999999999999986
No 66
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.08 E-value=68 Score=30.57 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=55.4
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEc-CchHHHHHHHHhcccCCCCCCcEE
Q 029120 81 GLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVS-GTPVDCVSLALSGALFSWSKPLLV 159 (198)
Q Consensus 81 GI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~-GTPaDCV~laL~~~l~~~~~PDLV 159 (198)
.-...+++|.++| .||+++ .+.-||+..+.+.++--+-.+++..+..=+ .|+.++ ..++.. ..|.|
T Consensus 153 ~~~~~v~~lv~aG-vDvI~i-----D~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a-~~l~~a------GaD~I 219 (404)
T PRK06843 153 DTIERVEELVKAH-VDILVI-----DSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAA-LDLISV------GADCL 219 (404)
T ss_pred HHHHHHHHHHhcC-CCEEEE-----ECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHH-HHHHHc------CCCEE
Confidence 3456889999999 688886 222365554433332111122233333324 455444 444431 37999
Q ss_pred EecCCCCCCCcCcccc-hh--hHHHHHHHHH--cCCCCCcccc
Q 029120 160 ISGINRGSSCGHHMCC-CR--SQRGINLWCT--FSVHIPKLEE 197 (198)
Q Consensus 160 ISGIN~G~N~G~~v~y-SG--TVgAA~EAa~--~G~~iPAIa~ 197 (198)
..|+-.|..|+.-.+. .| ++-+-.+... ...++|=||+
T Consensus 220 ~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAd 262 (404)
T PRK06843 220 KVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIAD 262 (404)
T ss_pred EECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEe
Confidence 9999999877665332 22 3333322211 2346888875
No 67
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=34.82 E-value=55 Score=25.53 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.2
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 74 DDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
-||.+...+...++.|+++| ++|.++.|...
T Consensus 7 ~~g~~~~e~~~~~~~l~~ag-~~v~~vs~~~~ 37 (166)
T TIGR01382 7 TDEFEDSELLYPLDRLREAG-HEVDTVSKEAG 37 (166)
T ss_pred cCCchHHHHHHHHHHHHHCC-CEEEEEecCCC
Confidence 47788888999999999999 79999988654
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=34.28 E-value=63 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.8
Q ss_pred CCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 78 ESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 78 ~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
.+-.+..|+++|.+.| |+|+|+.|..
T Consensus 16 ~e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 16 VETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 3456888999999999 8999999864
No 69
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=34.22 E-value=54 Score=32.86 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCCCCcc--HHHHHHHHHhcCCCcEEEEec
Q 029120 65 SKPVLLVTNGDGIESPG--LVYLVEALVREGLYNVHVCAP 102 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spG--I~aL~~aL~~~G~~dV~VvAP 102 (198)
.++.|||| ||+.... +...++.|++.| ++|++++=
T Consensus 150 pKVVILLT--DG~sns~~dvleaAq~LR~~G-VeI~vIGV 186 (576)
T PTZ00441 150 IQLVILMT--DGIPNSKYRALEESRKLKDRN-VKLAVIGI 186 (576)
T ss_pred ceEEEEEe--cCCCCCcccHHHHHHHHHHCC-CEEEEEEe
Confidence 46778888 9986543 333467899888 68888753
No 70
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=34.14 E-value=74 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=25.3
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
.+.-||+| ||....+....+..|++.| -.|+.++-..
T Consensus 104 ~~~iiliT--DG~~~~~~~~~~~~l~~~g-v~i~~ig~g~ 140 (164)
T cd01472 104 PKVLVVIT--DGKSQDDVEEPAVELKQAG-IEVFAVGVKN 140 (164)
T ss_pred CEEEEEEc--CCCCCchHHHHHHHHHHCC-CEEEEEECCc
Confidence 44457887 7766666666677888888 4777776544
No 71
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=32.50 E-value=68 Score=30.26 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=27.3
Q ss_pred CCCCCeEEEecCCCC----CCccHHHHHHHHHhcCCCcEEEE
Q 029120 63 DSSKPVLLVTNGDGI----ESPGLVYLVEALVREGLYNVHVC 100 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi----~spGI~aL~~aL~~~G~~dV~Vv 100 (198)
+.++|.++++ .|+ +++.++.|.++|.+.| +.|+|.
T Consensus 72 ~~~~P~vVl~--HGL~G~s~s~y~r~L~~~~~~rg-~~~Vv~ 110 (345)
T COG0429 72 AAKKPLVVLF--HGLEGSSNSPYARGLMRALSRRG-WLVVVF 110 (345)
T ss_pred ccCCceEEEE--eccCCCCcCHHHHHHHHHHHhcC-CeEEEE
Confidence 4455788887 555 6899999999999999 676553
No 72
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=32.36 E-value=72 Score=23.13 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=45.8
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeee-CCce-eEEEcCchHHHHH
Q 029120 66 KPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGAT-AYEVSGTPVDCVS 143 (198)
Q Consensus 66 ~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~-~g~~-~~~V~GTPaDCV~ 143 (198)
+-++-|+|..|+++.=...|++..++.. .+|++..- .+..-++++. .+-.... .|.. .+.++|.=++-+.
T Consensus 3 ~~~~~i~~~~GlHaRpA~~lv~~a~~f~-s~I~i~~~--~~~~dakSil-----~ll~Lg~~~G~~i~i~~~G~de~~a~ 74 (82)
T TIGR01003 3 SKEVTIINKVGLHARPAAILVKLASGFD-SEITLTKN--GKEVNAKSIM-----GIMMLGAGQGTEVTVSADGEDEAEAL 74 (82)
T ss_pred eEEEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEEC--CEEEehHhHH-----HHHhcCCCCCCEEEEEEeCcCHHHHH
Confidence 3468889999999999999999999887 68888742 2333333321 1111111 1333 2556776666555
Q ss_pred HHHhc
Q 029120 144 LALSG 148 (198)
Q Consensus 144 laL~~ 148 (198)
-.|..
T Consensus 75 ~~l~~ 79 (82)
T TIGR01003 75 EALAK 79 (82)
T ss_pred HHHHH
Confidence 55554
No 73
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.02 E-value=42 Score=32.52 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 153 WSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 153 ~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
..+||+||.|+- .|.|.-=.-.|||..|.+.-+ +||+++
T Consensus 74 k~~pDv~iaGPa--FNagrYG~acg~va~aV~e~~---~IP~vt 112 (431)
T TIGR01918 74 DKEPDIFIAGPA--FNAGRYGVACGEICKVVQDKL---NVPAVT 112 (431)
T ss_pred hcCCCEEEEcCc--cCCccHHHHHHHHHHHHHHhh---CCCeEE
Confidence 468999999984 577777777899999887754 599875
No 74
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.67 E-value=42 Score=32.46 Aligned_cols=39 Identities=13% Similarity=-0.000 Sum_probs=31.1
Q ss_pred CCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 153 WSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 153 ~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
..+||+||.|+- .|.|.-=.-.|||..|.+.-+ +||+++
T Consensus 74 k~~pDv~iaGPa--FNagrYG~acg~va~aV~e~~---~IP~vt 112 (431)
T TIGR01917 74 GANPDIFIAGPA--FNAGRYGMAAGAITKAVQDEL---GIKAFT 112 (431)
T ss_pred hcCCCEEEEcCc--cCCccHHHHHHHHHHHHHHhh---CCCeEE
Confidence 468999999984 577777777899999887754 599875
No 75
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=31.08 E-value=76 Score=24.72 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=26.7
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 74 DDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
-||..-..+..+++.|+..| ++|.+++|.
T Consensus 7 ~~gf~~~e~~~~~~~l~~a~-~~v~~vs~~ 35 (165)
T cd03134 7 ADGFEDVELTYPLYRLREAG-AEVVVAGPE 35 (165)
T ss_pred CCCchHHHHHHHHHHHHHCC-CEEEEEccC
Confidence 58999899999999999998 799999998
No 76
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=31.04 E-value=83 Score=27.23 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.9
Q ss_pred CCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 75 DGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 75 DGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
+|++-.=+..-++.|+++| ++|.++.|...
T Consensus 21 tG~~~~El~~p~~~l~~aG-~~V~~aS~~g~ 50 (232)
T cd03148 21 TGNHPVEMLLPLYHLHAAG-FDFDVATLSGL 50 (232)
T ss_pred CCCcHHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 5666666788899999999 79999999653
No 77
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=30.80 E-value=55 Score=30.19 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
...|.++|.+.| |+|.|+.|.-.+
T Consensus 23 v~~L~~aL~~~G-~~v~v~~p~y~~ 46 (473)
T TIGR02095 23 VGALPKALAALG-HDVRVLLPAYGC 46 (473)
T ss_pred HHHHHHHHHHcC-CeEEEEecCCcC
Confidence 578999999999 899999997754
No 78
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=30.79 E-value=91 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 81 GLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 81 GI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
..+.|+++|.+.| |+|+|+.+....
T Consensus 12 ~~~~la~~L~~~G-~~v~~~~~~~~~ 36 (396)
T cd03818 12 QFRHLAPALAAQG-HEVVFLTEPNAA 36 (396)
T ss_pred hHHHHHHHHHHCC-CEEEEEecCCCC
Confidence 4688999999999 899999988764
No 79
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.35 E-value=46 Score=31.37 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=35.9
Q ss_pred chHHHHHHHHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 137 TPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 137 TPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
-+=.+..-=+. ++ ...+||+||.|+- .|.|.-=.-+|+|+.|..--+ +||+|.
T Consensus 64 n~eea~~~i~~-mv-~~~~pD~viaGPa--FnagrYG~acg~v~~aV~e~~---~IP~vt 116 (349)
T PF07355_consen 64 NKEEALKKILE-MV-KKLKPDVVIAGPA--FNAGRYGVACGEVAKAVQEKL---GIPVVT 116 (349)
T ss_pred CHHHHHHHHHH-HH-HhcCCCEEEEcCC--cCCchHHHHHHHHHHHHHHhh---CCCEEE
Confidence 34444444443 23 2468999999984 477776667899988877654 589875
No 80
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.29 E-value=64 Score=29.72 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=30.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
|+|++.=..=-+..-.+.+.+.|.+.| |+|.|.+-+.+
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~ 38 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKD 38 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccc
Confidence 677776445456677888999999999 99999998763
No 81
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=30.20 E-value=83 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=31.4
Q ss_pred EEEecCCCCCC-ccHHHHHHHHHhcCCCcEEEEecCCCCccccc
Q 029120 69 LLVTNGDGIES-PGLVYLVEALVREGLYNVHVCAPQSDKSVSGH 111 (198)
Q Consensus 69 ILlTNDDGi~s-pGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~ 111 (198)
|+|+ |||+.. .=+++-++++++.+-.+|+|..|-..++.+-.
T Consensus 127 VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~ 169 (220)
T COG1926 127 VILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAE 169 (220)
T ss_pred EEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHHHH
Confidence 5555 999965 23566678888888789999999887776543
No 82
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.94 E-value=97 Score=25.01 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=26.2
Q ss_pred CCCCCeEEEecCCCCC----CccHHHHHHHHHhcCCCcEEEEec
Q 029120 63 DSSKPVLLVTNGDGIE----SPGLVYLVEALVREGLYNVHVCAP 102 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi~----spGI~aL~~aL~~~G~~dV~VvAP 102 (198)
...+.-||+| ||.. ...+...++.+++.| -.|+.|+-
T Consensus 108 ~~~~~iillT--DG~~~~~~~~~~~~~~~~~~~~g-i~i~~vgi 148 (186)
T cd01480 108 KENKFLLVIT--DGHSDGSPDGGIEKAVNEADHLG-IKIFFVAV 148 (186)
T ss_pred CCceEEEEEe--CCCcCCCcchhHHHHHHHHHHCC-CEEEEEec
Confidence 3456678898 7764 235667778888888 47888864
No 83
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=29.73 E-value=73 Score=23.11 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=29.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 029120 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 68 ~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvA 101 (198)
.+-|+|..|+++.-...|++...+.. .+|++..
T Consensus 5 ~~~i~~~~GlHaRPA~~lv~~a~~f~-~~i~l~~ 37 (82)
T PRK13782 5 RVEVSLKTGLQARPAALFVQEANRFH-ADIFIEK 37 (82)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 57899999999999999999999887 6888863
No 84
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=29.52 E-value=81 Score=25.52 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=25.0
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCC
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALVREGL 94 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~~~G~ 94 (198)
+...|.||=|||+.......+.+.|++.+.
T Consensus 4 ~~k~V~LTFDDgp~~~~t~~~l~~L~~~~i 33 (191)
T TIGR02764 4 SDKKIALTFDISWGNDYTEPILDTLKEYDV 33 (191)
T ss_pred CCCEEEEEEECCCCcccHHHHHHHHHHcCC
Confidence 345699999999997778888899999874
No 85
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=29.37 E-value=36 Score=27.36 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 74 GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 74 DDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
++.+...||..+++.+++.| |++++|.|..-
T Consensus 19 ~~~f~~~~i~~~v~~~~~rG-~~~v~v~~~~~ 49 (155)
T PF11977_consen 19 QKFFSVRGIQIAVEYFKSRG-HEVVVVFPPNY 49 (155)
T ss_dssp TTSEEHHHHHHHHHHHHHTT----EEEEEEGG
T ss_pred CCCcCHHHHHHHHHHHHHcC-CCeEEEEcchh
Confidence 34467789999999999999 78888888654
No 86
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=29.17 E-value=51 Score=31.72 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=29.5
Q ss_pred eEEEe-c-CCCCCCccHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 68 VLLVT-N-GDGIESPGLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 68 ~ILlT-N-DDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
+||+. . -.+-+--..+.++++|.+.| |+|+|+.|...
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 48755 3 34556678999999999999 99999999753
No 87
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=28.97 E-value=85 Score=29.92 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCCeEEEecCCCCCCc-cHHHHHHHHHhcCCCcEEEEecCC
Q 029120 65 SKPVLLVTNGDGIESP-GLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 65 ~~~~ILlTNDDGi~sp-GI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
+..+|||. ||.+.+= =++++++.|+++|..+|+|++-.-
T Consensus 339 ~gK~VlLV-DDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp 378 (445)
T PRK08525 339 EGKRIVVI-DDSIVRGTTSKKIVSLLRAAGAKEIHLRIACP 378 (445)
T ss_pred CCCeEEEE-ecccCcHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 34568888 9998653 388899999999977787766443
No 88
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=28.86 E-value=91 Score=25.06 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHhcCCCcEEEEecCCCCcc
Q 029120 79 SPGLVYLVEALVREGLYNVHVCAPQSDKSV 108 (198)
Q Consensus 79 spGI~aL~~aL~~~G~~dV~VvAP~~~qSg 108 (198)
..-+..|+++|.+.| |+|.++.+.....-
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~i~~~~~~~~~ 45 (374)
T cd03801 17 ERHVLELARALAARG-HEVTVLTPGDGGLP 45 (374)
T ss_pred hHHHHHHHHHHHhcC-ceEEEEecCCCCCC
Confidence 345788999999888 89999999766543
No 89
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=28.79 E-value=27 Score=32.22 Aligned_cols=36 Identities=28% Similarity=0.158 Sum_probs=22.2
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 68 ~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
+|||..-.+=+---++.+.++|.+.| |+|+|+.|..
T Consensus 2 kvLv~p~~~SH~~~~~~l~~~L~~rG-H~VTvl~~~~ 37 (500)
T PF00201_consen 2 KVLVFPMAYSHFIFMRPLAEELAERG-HNVTVLTPSP 37 (500)
T ss_dssp ----------SHHHHHHHHHHHHHH--TTSEEEHHHH
T ss_pred EEEEeCCCcCHHHHHHHHHHHHHhcC-CceEEEEeec
Confidence 35555544455667899999999999 9999999965
No 90
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=28.30 E-value=91 Score=24.89 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=25.0
Q ss_pred CCCCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 63 DSSKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
++..++||||-..|.- | +.|++.|.+.| ++|+++...
T Consensus 2 ~~~~~~ilItGasg~i--G-~~l~~~l~~~g-~~v~~~~r~ 38 (246)
T PRK05653 2 SLQGKTALVTGASRGI--G-RAIALRLAADG-AKVVIYDSN 38 (246)
T ss_pred CCCCCEEEEECCCcHH--H-HHHHHHHHHCC-CEEEEEeCC
Confidence 3445689999755432 2 45677788888 688888754
No 91
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=27.94 E-value=1.5e+02 Score=29.07 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHhcCCCcEEEEec--CCCCcccccccCCCCCeEEEEeeeCC-ceeEEEcCc-hH---HHHHHHHhcccCC
Q 029120 80 PGLVYLVEALVREGLYNVHVCAP--QSDKSVSGHSVTLRETIAVSSAEING-ATAYEVSGT-PV---DCVSLALSGALFS 152 (198)
Q Consensus 80 pGI~aL~~aL~~~G~~dV~VvAP--~~~qSg~g~siTl~~pl~v~~v~~~g-~~~~~V~GT-Pa---DCV~laL~~~l~~ 152 (198)
+--..|++.|++.| .+|.++.. -+-|--.-.++-- .| ..+|+..|- +- .|+..+|+. ..
T Consensus 56 ~~Ta~l~~tL~~~G-A~v~~~~~n~~stqD~~aaal~~-----------~g~i~vfa~~g~t~eey~~~~~~~l~~--~~ 121 (476)
T PTZ00075 56 VQTAVLIETLKALG-AEVRWCSCNIFSTQDHAAAAIAK-----------AGSVPVFAWKGETLEEYWWCTEQALKW--PN 121 (476)
T ss_pred HHHHHHHHHHHHcC-CEEEEEcCCCCccccHHHHHHHh-----------cCCeEEEEecCCCHHHHHHHHHHHHhc--cC
Confidence 34557888999998 79988873 4444444444321 24 667777775 44 488888875 23
Q ss_pred CCCCcEEE
Q 029120 153 WSKPLLVI 160 (198)
Q Consensus 153 ~~~PDLVI 160 (198)
+.+||++|
T Consensus 122 ~~~p~~i~ 129 (476)
T PTZ00075 122 GDGPNLIV 129 (476)
T ss_pred CCCCCEEE
Confidence 45799987
No 92
>PLN00016 RNA-binding protein; Provisional
Probab=27.85 E-value=88 Score=28.03 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEecCC
Q 029120 65 SKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI-~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
..++|||||=+|=.+-.| ..|++.|.+.| |+|+++.-..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC
Confidence 346799997776543222 34778888888 8999888543
No 93
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=27.52 E-value=1.5e+02 Score=19.73 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=17.5
Q ss_pred CCCCCeEEEecCCCCCCccHHHHHHHHHhcC
Q 029120 63 DSSKPVLLVTNGDGIESPGLVYLVEALVREG 93 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi~spGI~aL~~aL~~~G 93 (198)
..+.++||+..||-... ..+.+.|...|
T Consensus 2 ~~~~~~il~~~~~~~~~---~~l~~~l~~~~ 29 (129)
T PRK10610 2 ADKELKFLVVDDFSTMR---RIVRNLLKELG 29 (129)
T ss_pred CcccceEEEEcCCHHHH---HHHHHHHHHcC
Confidence 45668999998874333 34445565555
No 94
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=27.12 E-value=81 Score=27.20 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=24.5
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEE
Q 029120 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVC 100 (198)
Q Consensus 68 ~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~Vv 100 (198)
..||.-|| .+.++.|.++|.+.| ++|.++
T Consensus 11 ~lllvdDD---~~f~~~LaRa~e~RG-f~v~~a 39 (182)
T COG4567 11 SLLLVDDD---TPFLRTLARAMERRG-FAVVTA 39 (182)
T ss_pred eeEEecCC---hHHHHHHHHHHhccC-ceeEee
Confidence 58888888 689999999999999 577655
No 95
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=27.10 E-value=80 Score=25.91 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=22.1
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCCCcc
Q 029120 81 GLVYLVEALVREGLYNVHVCAPQSDKSV 108 (198)
Q Consensus 81 GI~aL~~aL~~~G~~dV~VvAP~~~qSg 108 (198)
-+..|+++|.+.| |+|+|+.+......
T Consensus 20 ~~~~l~~~L~~~g-~~v~v~~~~~~~~~ 46 (359)
T cd03823 20 VAHDLAEALAKRG-HEVAVLTAGEDPPR 46 (359)
T ss_pred HHHHHHHHHHhcC-CceEEEeCCCCCCC
Confidence 3677999999898 89999999876543
No 96
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.92 E-value=90 Score=26.69 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=24.9
Q ss_pred eEEEecCC-CCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 68 VLLVTNGD-GIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 68 ~ILlTNDD-Gi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
|||++.-. |=+--.+..|+++|.+.| |+|+|+++..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 46666322 222335668999999999 8999998754
No 97
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.71 E-value=1.1e+02 Score=23.63 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=24.8
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 68 ~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
||||-==-++.+..+..+.+.|++.| ++|.|+.=.
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g-~~v~vv~S~ 36 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAG-WEVRVVLSP 36 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTT-SEEEEEESH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCC-CEEEEEECC
Confidence 34433225667777888899999998 899988743
No 98
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=26.37 E-value=44 Score=28.81 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=18.4
Q ss_pred Ccccchh-hHHHHHHHHHcCCCCCc
Q 029120 171 HHMCCCR-SQRGINLWCTFSVHIPK 194 (198)
Q Consensus 171 ~~v~ySG-TVgAA~EAa~~G~~iPA 194 (198)
.||+|+| ||-||+.|.+ .++=|+
T Consensus 103 DDVLytGRTIRAAldal~-d~GRPa 126 (179)
T COG2065 103 DDVLYTGRTIRAALDALV-DYGRPA 126 (179)
T ss_pred eeecccCccHHHHHHHHH-hcCCcc
Confidence 4689988 9999999986 356675
No 99
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=26.07 E-value=85 Score=23.03 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=24.3
Q ss_pred CCCeEEEecCCCCCCcc-HHHHHHHHHhcCCCcEEE
Q 029120 65 SKPVLLVTNGDGIESPG-LVYLVEALVREGLYNVHV 99 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spG-I~aL~~aL~~~G~~dV~V 99 (198)
+.-+|||. ||-+++=+ ++.+.+.|++.|...|.+
T Consensus 87 ~gk~vliV-DDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIV-DDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEE-EEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEE-eeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 44578888 88787633 788899999999443333
No 100
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=25.81 E-value=26 Score=25.29 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=15.4
Q ss_pred EEecCCCCCC-ccHHHHHHHHHhcC
Q 029120 70 LVTNGDGIES-PGLVYLVEALVREG 93 (198)
Q Consensus 70 LlTNDDGi~s-pGI~aL~~aL~~~G 93 (198)
||||+||--| -+..-+.-+|.-.|
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv~ag 27 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALVMAG 27 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHHHHH
Confidence 8999999754 34444555555544
No 101
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=24.88 E-value=1.2e+02 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=21.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEE
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVC 100 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~Vv 100 (198)
|+||||=- .++-..|.+.|.+.| ++|+.+
T Consensus 1 m~VLvTRp----~~~~~~l~~~L~~~G-~~~~~~ 29 (240)
T PRK09189 1 MRVLVTRP----EPAAERTAARLRAMG-HEPVLL 29 (240)
T ss_pred CeEEEECC----CCchHHHHHHHHHCC-CceEEe
Confidence 68999943 345567888999999 566655
No 102
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=24.84 E-value=1.5e+02 Score=24.68 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCCCeEEEecCCCCCC------ccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 64 SSKPVLLVTNGDGIES------PGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 64 ~~~~~ILlTNDDGi~s------pGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
..+-.||+||+|.... .-+..+++.|.+.| -+++++.-..
T Consensus 127 ~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~g-I~i~~i~i~~ 172 (218)
T cd01458 127 SHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKG-IELELFPLSS 172 (218)
T ss_pred cccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecCC
Confidence 3455699999888742 23456677777777 4777776544
No 103
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.39 E-value=1.1e+02 Score=24.44 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCCCeEEEe--cCCCCCCccHHHHHHHHHhcCCCcEEEEecC
Q 029120 64 SSKPVLLVT--NGDGIESPGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 64 ~~~~~ILlT--NDDGi~spGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
+++++||+. .+| .+.-|+..+...|+..| ++|+-.-+.
T Consensus 1 ~~~~~vl~~~~~gD-~H~lG~~iv~~~lr~~G-~eVi~LG~~ 40 (137)
T PRK02261 1 MKKKTVVLGVIGAD-CHAVGNKILDRALTEAG-FEVINLGVM 40 (137)
T ss_pred CCCCEEEEEeCCCC-hhHHHHHHHHHHHHHCC-CEEEECCCC
Confidence 456777776 555 56789999999999999 688765443
No 104
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=24.34 E-value=1.4e+02 Score=24.58 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCcc-HHHHHHHHHhcCC
Q 029120 65 SKPVLLVTNGDGIESPG-LVYLVEALVREGL 94 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spG-I~aL~~aL~~~G~ 94 (198)
+.-+|||. ||.+.+=+ ++++++.|+++|.
T Consensus 119 ~gk~VLIV-DDiitTG~Tl~aa~~~L~~~GA 148 (178)
T PRK07322 119 KGKRVAIV-DDVVSTGGTLTALERLVERAGG 148 (178)
T ss_pred CCCEEEEE-eccccccHHHHHHHHHHHHcCC
Confidence 34578888 88887633 8889999999983
No 105
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=24.26 E-value=1.5e+02 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.3
Q ss_pred CccHHHHHHHHHhcCCCcEEEEecCCCCc
Q 029120 79 SPGLVYLVEALVREGLYNVHVCAPQSDKS 107 (198)
Q Consensus 79 spGI~aL~~aL~~~G~~dV~VvAP~~~qS 107 (198)
..-+..|+++|.+.| |+|.|+.+.....
T Consensus 15 ~~~~~~l~~~l~~~g-~~v~v~~~~~~~~ 42 (353)
T cd03811 15 ERVLLNLANGLDKRG-YDVTLVVLRDEGD 42 (353)
T ss_pred chhHHHHHHHHHhcC-ceEEEEEcCCCCc
Confidence 345788999998888 8999999876544
No 106
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=24.10 E-value=1e+02 Score=26.96 Aligned_cols=38 Identities=0% Similarity=-0.051 Sum_probs=26.9
Q ss_pred CeEEEecCCC----CCCccHHHHHHHHHhc--CCCcEEEEecCCC
Q 029120 67 PVLLVTNGDG----IESPGLVYLVEALVRE--GLYNVHVCAPQSD 105 (198)
Q Consensus 67 ~~ILlTNDDG----i~spGI~aL~~aL~~~--G~~dV~VvAP~~~ 105 (198)
|||++.++-- =...-+..|+++|.+. | ++|++++|...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g-~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKIN-CEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcc-eeEEEEecCCC
Confidence 6787776531 1223467788999988 7 89999998653
No 107
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=24.00 E-value=1.5e+02 Score=24.07 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=28.5
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCC
Q 029120 68 VLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 68 ~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
||+|-=-||.+---+...++.|+++| ++|.++.+..
T Consensus 4 ~~~il~~~g~~~~e~~~p~~~l~~ag-~~v~~~s~~~ 39 (196)
T PRK11574 4 SALVCLAPGSEETEAVTTIDLLVRGG-IKVTTASVAS 39 (196)
T ss_pred eEEEEeCCCcchhhHhHHHHHHHHCC-CeEEEEEccC
Confidence 34444358898888999999999998 7999998754
No 108
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=23.75 E-value=1.3e+02 Score=28.91 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCCCC-ccHHHHHHHHHhcCCCcEEEEecC
Q 029120 65 SKPVLLVTNGDGIES-PGLVYLVEALVREGLYNVHVCAPQ 103 (198)
Q Consensus 65 ~~~~ILlTNDDGi~s-pGI~aL~~aL~~~G~~dV~VvAP~ 103 (198)
+..+|||. ||+|.+ .=++.+++.|+++|..+|++++-.
T Consensus 352 ~gk~VlLV-DD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~ 390 (469)
T PRK05793 352 EGKRVVLI-DDSIVRGTTSKRLVELLRKAGAKEVHFRVSS 390 (469)
T ss_pred CCCEEEEE-ccccCchHHHHHHHHHHHHcCCCEEEEEEEC
Confidence 34567777 999875 238889999999997777776543
No 109
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=23.40 E-value=1.5e+02 Score=24.82 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=22.6
Q ss_pred CCCeEEEecCCCCCC--ccHHHHHHHHHhcCCCcEEEEe
Q 029120 65 SKPVLLVTNGDGIES--PGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 65 ~~~~ILlTNDDGi~s--pGI~aL~~aL~~~G~~dV~VvA 101 (198)
.|.-||||.| +.+. ......++.|++.| -.|+.|+
T Consensus 132 ~kvvIllTDg-~~~~~~~~~~~~a~~l~~~G-I~i~tVG 168 (193)
T cd01477 132 KKVVIVFASD-YNDEGSNDPRPIAARLKSTG-IAIITVA 168 (193)
T ss_pred CeEEEEEecC-ccCCCCCCHHHHHHHHHHCC-CEEEEEE
Confidence 4556888843 3322 34667788899988 4777664
No 110
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=23.34 E-value=1.4e+02 Score=21.07 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.8
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCCcEEEEe
Q 029120 69 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 69 ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvA 101 (198)
+-|+|..|+++.-...|++...+.. .+|.+..
T Consensus 2 ~~i~~~~GlHaRpa~~~v~~a~~~~-~~v~i~~ 33 (77)
T cd00367 2 VTITNPLGLHARPAALLVQLASKFK-SDITLRK 33 (77)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHhCC-CEEEEEE
Confidence 5689999999999999999999887 6888864
No 111
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=22.81 E-value=1.8e+02 Score=25.78 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEecCCCCCCccHHHHHHHHHhcCC
Q 029120 61 NVDSSKPVLLVTNGDGIESPGLVYLVEALVREGL 94 (198)
Q Consensus 61 ~~~~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~ 94 (198)
.....+..|.||=|||+.......+.+.|++.+.
T Consensus 79 ~g~~~~k~VaLTFDdg~~~~~t~~iL~iLkk~~v 112 (268)
T TIGR02873 79 RGHPEKPMVALLINVAWGNEYLPEILQILKKHDV 112 (268)
T ss_pred ecCCCCCEEEEEEeCCCCcchHHHHHHHHHHCCC
Confidence 3445677899999999998889889999999874
No 112
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=22.69 E-value=1.4e+02 Score=22.69 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=35.9
Q ss_pred CCCCeEEEecCCCC-------CCccHHHHHHHHHhcCCCcEEEEecCCCCccccc
Q 029120 64 SSKPVLLVTNGDGI-------ESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGH 111 (198)
Q Consensus 64 ~~~~~ILlTNDDGi-------~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~ 111 (198)
..++||+||=--.. ...-++.|.++|.+.+ .+|++.++..+....|.
T Consensus 38 ~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ld-vEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 38 PGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLD-VEVVVALPAAQRAELGE 91 (97)
T ss_dssp TSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSS-SEEEEEETTCCCGGCCS
T ss_pred CCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCC-cEEEEECCHHHHHhhCC
Confidence 68899999832111 1246889999999998 79999999998887654
No 113
>PRK12342 hypothetical protein; Provisional
Probab=22.37 E-value=1.8e+02 Score=25.85 Aligned_cols=51 Identities=14% Similarity=-0.048 Sum_probs=31.8
Q ss_pred CchHHHHHHHHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
|.-.-+...+|...+.. ..||||+.| ....-.++|-||+.+...+ ++|.|.
T Consensus 91 g~D~~ata~~La~~i~~-~~~DLVl~G------~~s~D~~tgqvg~~lA~~L---g~P~vt 141 (254)
T PRK12342 91 HALPLDTAKALAAAIEK-IGFDLLLFG------EGSGDLYAQQVGLLLGELL---QLPVIN 141 (254)
T ss_pred CCCHHHHHHHHHHHHHH-hCCCEEEEc------CCcccCCCCCHHHHHHHHh---CCCcEe
Confidence 43344445555554432 359999999 2223457889998777665 478764
No 114
>PRK06398 aldose dehydrogenase; Validated
Probab=22.15 E-value=4.6e+02 Score=21.76 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=40.8
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHHH
Q 029120 65 SKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVS 143 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI-~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV~ 143 (198)
+..+||||--. -|| +++++.|.+.| ++|+++.-...+. . . ...+.+|=+--+.+.
T Consensus 5 ~gk~vlItGas----~gIG~~ia~~l~~~G-~~Vi~~~r~~~~~---------~--~--------~~~~~~D~~~~~~i~ 60 (258)
T PRK06398 5 KDKVAIVTGGS----QGIGKAVVNRLKEEG-SNVINFDIKEPSY---------N--D--------VDYFKVDVSNKEQVI 60 (258)
T ss_pred CCCEEEEECCC----chHHHHHHHHHHHCC-CeEEEEeCCcccc---------C--c--------eEEEEccCCCHHHHH
Confidence 34579999532 233 45788898899 7888775332110 0 1 123445544445555
Q ss_pred HHHhcccCCCCCCcEEEe
Q 029120 144 LALSGALFSWSKPLLVIS 161 (198)
Q Consensus 144 laL~~~l~~~~~PDLVIS 161 (198)
-++..+.....++|.+|.
T Consensus 61 ~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 61 KGIDYVISKYGRIDILVN 78 (258)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 555543222346899986
No 115
>PRK06182 short chain dehydrogenase; Validated
Probab=22.09 E-value=1.6e+02 Score=24.55 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCceeEEEcCchHHHHHHH
Q 029120 66 KPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLA 145 (198)
Q Consensus 66 ~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~~~V~GTPaDCV~la 145 (198)
...||||=-.| --| +++++.|.+.| ++|++++...++ .- .+ . ..+...+.+|=+=.+.+.-.
T Consensus 3 ~k~vlItGasg--giG-~~la~~l~~~G-~~V~~~~r~~~~--l~-~~--~---------~~~~~~~~~Dv~~~~~~~~~ 64 (273)
T PRK06182 3 KKVALVTGASS--GIG-KATARRLAAQG-YTVYGAARRVDK--ME-DL--A---------SLGVHPLSLDVTDEASIKAA 64 (273)
T ss_pred CCEEEEECCCC--hHH-HHHHHHHHHCC-CEEEEEeCCHHH--HH-HH--H---------hCCCeEEEeeCCCHHHHHHH
Confidence 45799994332 223 34678888888 788877643221 00 00 0 01233455665555666655
Q ss_pred HhcccCCCCCCcEEEe
Q 029120 146 LSGALFSWSKPLLVIS 161 (198)
Q Consensus 146 L~~~l~~~~~PDLVIS 161 (198)
+..+.....++|.||.
T Consensus 65 ~~~~~~~~~~id~li~ 80 (273)
T PRK06182 65 VDTIIAEEGRIDVLVN 80 (273)
T ss_pred HHHHHHhcCCCCEEEE
Confidence 6544322347899995
No 116
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=22.05 E-value=1.2e+02 Score=22.45 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=46.4
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeee-CCce-eEEEcCchHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGAT-AYEVSGTPVDCVSL 144 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~-~g~~-~~~V~GTPaDCV~l 144 (198)
..+-|+|..|+++.--..|++...+.. .+|++.- ..+..-+.++- .+-.... .|.. .+.++|.=++-+.-
T Consensus 4 ~~v~I~n~~GLHARPAa~lv~~a~~~~-s~v~l~~--~~~~~~akSil-----~lm~Lg~~~G~~v~i~~~G~De~~A~~ 75 (85)
T PRK10850 4 QEVTITAPNGLHTRPAAQFVKEAKGFT-SEITVTS--NGKSASAKSLF-----KLQTLGLTQGTVVTISAEGEDEQKAVE 75 (85)
T ss_pred EEEEECCCCcccHHHHHHHHHHHHhCC-CEEEEEE--CCeEEchHhHH-----HHHhcCCCCCCEEEEEEeCcCHHHHHH
Confidence 458899999999999999999998876 6888752 22333333221 0000000 1333 35677777766666
Q ss_pred HHhccc
Q 029120 145 ALSGAL 150 (198)
Q Consensus 145 aL~~~l 150 (198)
+|..++
T Consensus 76 ~l~~ll 81 (85)
T PRK10850 76 HLVKLM 81 (85)
T ss_pred HHHHHH
Confidence 666543
No 117
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.81 E-value=2e+02 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCC
Q 029120 64 SSKPVLLVTNGDGIESPGLVYLVEALVREGL 94 (198)
Q Consensus 64 ~~~~~ILlTNDDGi~spGI~aL~~aL~~~G~ 94 (198)
..+..|.||=|||+.......+.+.|++.+.
T Consensus 34 ~~~k~VaLTFDDGp~~~~t~~lL~~L~~~~v 64 (224)
T TIGR02884 34 TSKKVIYLTFDNGYENGYTPKILDVLKEKKV 64 (224)
T ss_pred CCCCEEEEEEECCCCccchHHHHHHHHHcCC
Confidence 3445699999999987777788899998874
No 118
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.67 E-value=1.9e+02 Score=25.64 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=0.0
Q ss_pred CCCCCCCeEEEecCCCCCCcc-HHHHHHHHHhcCCCcEEEEe
Q 029120 61 NVDSSKPVLLVTNGDGIESPG-LVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 61 ~~~~~~~~ILlTNDDGi~spG-I~aL~~aL~~~G~~dV~VvA 101 (198)
..+-+.-+|||. ||.+.+-+ +...++.|++.|...|++++
T Consensus 199 ~~~v~Gk~VlIV-DDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 239 (285)
T PRK00934 199 NLDVKGKDVLIV-DDIISTGGTMATAIKILKEQGAKKVYVAC 239 (285)
T ss_pred ccccCCCEEEEE-cCccccHHHHHHHHHHHHHCCCCEEEEEE
No 119
>PRK12367 short chain dehydrogenase; Provisional
Probab=21.52 E-value=1.6e+02 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCeEEEecCCCCCCccH-HHHHHHHHhcCCCcEEEEecCC
Q 029120 57 DSTENVDSSKPVLLVTNGDGIESPGL-VYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 57 ~~~~~~~~~~~~ILlTNDDGi~spGI-~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
+++..++.+...+|||--.| || +++++.|.+.| ++|++++...
T Consensus 5 ~~~~~~~l~~k~~lITGas~----gIG~ala~~l~~~G-~~Vi~~~r~~ 48 (245)
T PRK12367 5 DPMAQSTWQGKRIGITGASG----ALGKALTKAFRAKG-AKVIGLTHSK 48 (245)
T ss_pred chhhHHhhCCCEEEEEcCCc----HHHHHHHHHHHHCC-CEEEEEECCc
Confidence 34445566667899995433 33 55788888889 7898887543
No 120
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=21.18 E-value=1.2e+02 Score=25.85 Aligned_cols=31 Identities=23% Similarity=0.123 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEE
Q 029120 65 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVC 100 (198)
Q Consensus 65 ~~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~Vv 100 (198)
+..+||||= -.+.-..|++.|++.| ++|+.+
T Consensus 2 ~g~~vlvTR----p~~~~~~l~~~l~~~G-~~~~~~ 32 (255)
T PRK05752 2 SGWRLLLTR----PAEECAALAASLAEAG-IFSSSL 32 (255)
T ss_pred CCCEEEECC----cHHHHHHHHHHHHHcC-CCEEEc
Confidence 457899993 3456678899999999 677664
No 121
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.15 E-value=2.1e+02 Score=25.49 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=32.4
Q ss_pred CchHHHHHHHHhcccCCCCCCcEEEecCCCCCCCcCcccchhhHHHHHHHHHcCCCCCccc
Q 029120 136 GTPVDCVSLALSGALFSWSKPLLVISGINRGSSCGHHMCCCRSQRGINLWCTFSVHIPKLE 196 (198)
Q Consensus 136 GTPaDCV~laL~~~l~~~~~PDLVISGIN~G~N~G~~v~ySGTVgAA~EAa~~G~~iPAIa 196 (198)
|.-.-.+...|...+.. ..||||+.|- ...-.++|-||+.+...+ ++|.|.
T Consensus 94 g~D~~~tA~~La~ai~~-~~~DLVl~G~------~s~D~~tgqvg~~lAe~L---g~P~vt 144 (256)
T PRK03359 94 QALPQQTASALAAAAQK-AGFDLILCGD------GSSDLYAQQVGLLVGEIL---NIPAIN 144 (256)
T ss_pred CcCHHHHHHHHHHHHHH-hCCCEEEEcC------ccccCCCCcHHHHHHHHh---CCCcee
Confidence 44444555555554432 3599999992 233457889998777765 478764
No 122
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=21.10 E-value=2.1e+02 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=16.9
Q ss_pred CccHHHHHHHHHhcCCCcEEEEe
Q 029120 79 SPGLVYLVEALVREGLYNVHVCA 101 (198)
Q Consensus 79 spGI~aL~~aL~~~G~~dV~VvA 101 (198)
.|+| +++++|++.| |+|+.++
T Consensus 16 ~Pal-a~a~~l~~~g-~~v~~vg 36 (352)
T PRK12446 16 TPNL-AIIPYLKEDN-WDISYIG 36 (352)
T ss_pred HHHH-HHHHHHHhCC-CEEEEEE
Confidence 4666 4789999888 8999997
No 123
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=21.09 E-value=46 Score=32.42 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCCCeEEEecCCCC--CCccHHHHHHHHHhcCCCcEEEEecCCCC----cccccccCCCCCeEEEEee--eCCceeEEE
Q 029120 63 DSSKPVLLVTNGDGI--ESPGLVYLVEALVREGLYNVHVCAPQSDK----SVSGHSVTLRETIAVSSAE--INGATAYEV 134 (198)
Q Consensus 63 ~~~~~~ILlTNDDGi--~spGI~aL~~aL~~~G~~dV~VvAP~~~q----Sg~g~siTl~~pl~v~~v~--~~g~~~~~V 134 (198)
......|+||+.||+ ..-|-..+.+.+.+.+ +..=+.++++ .|.|.++..++|+.+..-| ......|.|
T Consensus 69 ~~~~~~~~l~D~~G~vL~~~g~~~~~~~~~~~~---~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~~~~~~c 145 (638)
T PRK11388 69 ADRECALLILDETGCILSRNGDPQTLQQLSALG---FNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQALHNWAF 145 (638)
T ss_pred cCCCcEEEEEcCCceEEEEeCCHHHHHHHHHcC---CccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHhccCceE
Confidence 445678999999997 3445445555555544 2233444443 5788888889998776532 112334556
Q ss_pred cCchH
Q 029120 135 SGTPV 139 (198)
Q Consensus 135 ~GTPa 139 (198)
.+.|+
T Consensus 146 ~aaPI 150 (638)
T PRK11388 146 CATPV 150 (638)
T ss_pred EeeEE
Confidence 66654
No 124
>COG1925 FruB Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]
Probab=20.68 E-value=1.6e+02 Score=22.22 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=52.2
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeeeCCcee-EEEcCchHHHHHH
Q 029120 66 KPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATA-YEVSGTPVDCVSL 144 (198)
Q Consensus 66 ~~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~~g~~~-~~V~GTPaDCV~l 144 (198)
+..+.|.|..|+++.=-..|++..++.. .+|.+.-. .+...+.|+-----|-+. .|... +.++|.=+.-+.-
T Consensus 3 ~~~~~i~n~~GLHARPAa~lv~~a~~f~-s~i~l~~~--g~~~~akSim~lm~Lg~~----~G~~i~i~a~G~de~~Al~ 75 (88)
T COG1925 3 SKTVTIKNKNGLHARPAAKLVKLASKFD-SEITLTNN--GKEANAKSIMGLMALGAK----KGDEIELSAEGEDEEEALE 75 (88)
T ss_pred ceEEEEECCCccchhhHHHHHHHHhcCC-ceEEEEeC--CEEechHhHHHHHHhCcC----CCCEEEEEEeCccHHHHHH
Confidence 3468999999999988889999998886 68888877 444444443200000000 13332 5678888888888
Q ss_pred HHhccc
Q 029120 145 ALSGAL 150 (198)
Q Consensus 145 aL~~~l 150 (198)
+|..++
T Consensus 76 aL~~li 81 (88)
T COG1925 76 ALSELI 81 (88)
T ss_pred HHHHHH
Confidence 887754
No 125
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=20.58 E-value=80 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
+..|+++|++.| |+|.++.+...+
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 456889999999 999999997754
No 126
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.32 E-value=1.2e+02 Score=23.38 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=14.8
Q ss_pred CCCCCccHHHHHHHHHhcCCCcEEEE
Q 029120 75 DGIESPGLVYLVEALVREGLYNVHVC 100 (198)
Q Consensus 75 DGi~spGI~aL~~aL~~~G~~dV~Vv 100 (198)
+|--|.|+..-++-+...- .+|..+
T Consensus 9 HG~~A~gl~~s~~~i~G~~-~~i~~i 33 (116)
T TIGR00824 9 HGQAAIALLKSAEMIFGEQ-NNVGAV 33 (116)
T ss_pred cHHHHHHHHHHHHHHcCCc-CCeEEE
Confidence 5557778877777665321 235444
No 127
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=20.13 E-value=1.3e+02 Score=22.28 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=49.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCCcEEEEecCCCCcccccccCCCCCeEEEEeee-CCce-eEEEcCchHHHHHH
Q 029120 67 PVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGAT-AYEVSGTPVDCVSL 144 (198)
Q Consensus 67 ~~ILlTNDDGi~spGI~aL~~aL~~~G~~dV~VvAP~~~qSg~g~siTl~~pl~v~~v~~-~g~~-~~~V~GTPaDCV~l 144 (198)
..+.|+|..|+++.-...|++..++.. .+|++.. ..+..-++++- .+-.... .|.. .+.++|.=.+-+.-
T Consensus 4 ~~~~I~n~~GLHARPAa~lv~~a~~~~-s~i~l~~--~~~~vdakSil-----~lm~Lg~~~G~~v~i~a~G~De~~Al~ 75 (88)
T PRK13780 4 KDFHITAETGIHARPATLLVQTASKFD-SDITLEY--NGKSVNLKSIM-----GVMSLGVGQGADITISAEGADAADAIA 75 (88)
T ss_pred EEEEECCCCcccHHHHHHHHHHHHhCC-CEEEEEE--CCEEEechhHH-----HHHhcCCCCCCEEEEEEeCcCHHHHHH
Confidence 468899999999999999999999876 6888863 22333333221 0000000 2333 36788888888877
Q ss_pred HHhccc
Q 029120 145 ALSGAL 150 (198)
Q Consensus 145 aL~~~l 150 (198)
+|..+|
T Consensus 76 ~l~~~l 81 (88)
T PRK13780 76 AIEETM 81 (88)
T ss_pred HHHHHH
Confidence 777654
No 128
>PRK14098 glycogen synthase; Provisional
Probab=20.10 E-value=93 Score=29.55 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCcEEEEecCC
Q 029120 82 LVYLVEALVREGLYNVHVCAPQS 104 (198)
Q Consensus 82 I~aL~~aL~~~G~~dV~VvAP~~ 104 (198)
+.+|-++|++.| |+|.|+.|.-
T Consensus 28 ~~~Lp~al~~~g-~~v~v~~P~y 49 (489)
T PRK14098 28 MASFPQALEEEG-FEARIMMPKY 49 (489)
T ss_pred HHHHHHHHHHCC-CeEEEEcCCC
Confidence 578899999999 8999999954
No 129
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=20.04 E-value=1.7e+02 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCCeEEEecCC-C-CCCccHHHHHHHHHhcCCCcEEEEecCCCC
Q 029120 65 SKPVLLVTNGD-G-IESPGLVYLVEALVREGLYNVHVCAPQSDK 106 (198)
Q Consensus 65 ~~~~ILlTNDD-G-i~spGI~aL~~aL~~~G~~dV~VvAP~~~q 106 (198)
+.|||||-=++ | =+-.-.++|.++|.+.| ++|++++|....
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g-~~~~~~~d~~~~ 45 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKG-IKDVIVCDLFGE 45 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcC-CCcEEEEEhHHh
Confidence 44677765433 2 12234678888998888 778888887753
No 130
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.01 E-value=1.3e+02 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=20.4
Q ss_pred cHHHHHHHHHhcCCCcEEEEecCCC
Q 029120 81 GLVYLVEALVREGLYNVHVCAPQSD 105 (198)
Q Consensus 81 GI~aL~~aL~~~G~~dV~VvAP~~~ 105 (198)
-+..|+++|.+.| |+|.|+.+...
T Consensus 20 ~~~~la~~L~~~g-~~v~v~~~~~~ 43 (363)
T cd04955 20 FVEELAPRLVARG-HEVTVYCRSPY 43 (363)
T ss_pred HHHHHHHHHHhcC-CCEEEEEccCC
Confidence 4678999999999 89999998654
Done!