BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029122
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 228 bits (580), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 129/167 (77%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
KV+FDI +GGK GRIVM L+ VPKT NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P+FMIQ ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P +I++ G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
KV+FDI + K GRIVM L+ VPKT ENFRALCTGEKG G+SGKPL+YK S FHR+I
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLK---HTGPGVLSMANAGPDTNGSQFFI 146
P+FMIQ ESI+G +F DE+F K HTG G LSMANAGP+TNGSQFFI
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
T T WLDG+HVVFG+V+ G+DVV+K+E G SG+ +S++V+S+ GE+A
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVA 179
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 209 bits (531), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 115/164 (70%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
VYFDI +G P GRI M LF VP T ENFRALCTGEKG+G+SGKPL Y GS FHRIIP
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
FMIQ ESI+G F DENF H P +LSMANAGP+TNGSQFFITTV
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
WLDG+HVVFGKVL GM+VV+ IE G Q+G+P V I+ SG
Sbjct: 142 CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
VY D++ GKP+GR+V+ L VPKT ENFRALCTGEKG G YKGS+FHR+IP
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
SFM Q +SI+G F DENF LKH GPGVLSMANAGP+TNGSQFFI T+
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
T WLDG+HVVFG V+ GMDVV+KIE+ G +SG K+VI++ G+++
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
VY D++ GKP+GR+V+ L VPKT ENFRALCTGEKG G YKGS+FHR+IP
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
SFM Q +SI+G F DENF LKH GPGVLSMANAGP+TNGSQFFI T+
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
T WLDG+HVVFG V+ GMDVV+KIE+ G +SG K+VI++ G+++
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
VY D++ GKP+GR+V+ L VPKT ENFRALCTGEKG G YKGS+FHR+IP
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 59
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
SFM Q +SI+G F DENF LKH GPGVLSMANAGP+TNGSQFFI T+
Sbjct: 60 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 119
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
T WLDG+HVVFG V+ GMDVV+KIE+ G +SG K+VI++ G+++
Sbjct: 120 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 206 bits (525), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
VY D++ GKP+GR+V+ L VPKT ENFRALCTGEKG G YKGS+FHR+IP
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 57
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
SFM Q +SI+G F DENF LKH GPGVLSMANAGP+TNGSQFFI T+
Sbjct: 58 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 117
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
T WLDG+HVVFG V+ GMDVV+KIE+ G +SG K+VI++ G+++
Sbjct: 118 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 204 bits (518), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 121/174 (69%), Gaps = 8/174 (4%)
Query: 26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
KVT +VYFD+E+GGKPIGRIV+GLFGK VPKT NF L KG G Y GS F
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF 56
Query: 86 HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
HR+I FMIQ SI+GE FADENFKLKH G G LSMANAG DTNGSQFF
Sbjct: 57 HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
ITTV T WLDGRHVVFGK+L GMDVVRKIE + G+ PK V+I+ SG +A+
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 117/165 (70%), Gaps = 7/165 (4%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
V+FDI G P+G I LF VPKT NFRALCTGEKG G Y GS FHR+I
Sbjct: 3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM+Q +SI+G FADENF+LKH PG+LSMANAGP+TNGSQFFITTV
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
+TSWLDG+HVVFG+V+ GM+VV+ IEAEG SG+P+S++ I+ G
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 199 bits (506), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 12/183 (6%)
Query: 19 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPL 78
+ +++ KVT KVYFD+ +G + IGR+V+GLFGK VPKTV+NF AL TGEKG G
Sbjct: 3 DEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------ 56
Query: 79 YYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPD 138
YK S FHR+I FMIQ +SI+GE F DENFKLKH GPG +SMANAG D
Sbjct: 57 -YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKD 115
Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE---AEGRQSGEPKSKVVISNSGE 195
TNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E +GR +P V I++ G+
Sbjct: 116 TNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRD--KPLKDVTIADCGK 173
Query: 196 MAL 198
+ +
Sbjct: 174 IEV 176
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 199 bits (506), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 98/167 (58%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
KV+FDI + GRI+ LF P+T ENFRALCTGEK IG GK L+YK S FHRII
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM Q ESI+G SF DENF +KH PG+LSMANAGP+TN SQFFIT V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
WLDG+HVVFGKV+ GM+VVR++E EG +SG K VVI++ GE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
+VY DI++G KP GRI M L VP T ENFR LCT EKG G +KGSSFHRII
Sbjct: 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 65
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM Q +SI+G+ F DENF LKHTGPG+LSMAN+GP+TNGSQFF+T
Sbjct: 66 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
T WLDG+HVVFG+V G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 126 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
+VY DI++G KP GRI M L VP T ENFR LCT EKG G +KGSSFHRII
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 57
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM Q +SI+G+ F DENF LKHTGPG+LSMAN+GP+TNGSQFF+T
Sbjct: 58 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
T WLDG+HVVFG+V G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 118 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 12/183 (6%)
Query: 19 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPL 78
+ +++ KVT KVYFD+ +G + IGR+V+GLFGK VPKTV+NF AL TGEKG G
Sbjct: 3 DEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------ 56
Query: 79 YYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPD 138
YK S FHR+I FMIQ +SI+GE F DENFKLKH GPG +SMANAG D
Sbjct: 57 -YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKD 115
Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE---AEGRQSGEPKSKVVISNSGE 195
TNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E +GR +P V I++ G+
Sbjct: 116 TNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRD--KPLKDVTIADCGK 173
Query: 196 MAL 198
+ +
Sbjct: 174 IEV 176
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 129/184 (70%), Gaps = 8/184 (4%)
Query: 16 LEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSG 75
L + +++ KVT KVYFD+ +G + +GR++ GLFGK VPKTV+NF AL TGEKG G
Sbjct: 3 LGSDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--- 59
Query: 76 KPLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANA 135
YK S FHR+I FMIQ +SI+GE F DENFKLKH GPG +SMANA
Sbjct: 60 ----YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANA 115
Query: 136 GPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSG 194
G DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E+ S +P V+I++ G
Sbjct: 116 GKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 175
Query: 195 EMAL 198
++ +
Sbjct: 176 KIEV 179
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
KVT KVYFD+ +G + +GR++ GLFGK VPKTV+NF AL TGEKG G YK S F
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKF 55
Query: 86 HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
HR+I FMIQ +SI+GE F DENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 56 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 115
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEMAL 198
ITTV T+WLDG+HVVFGKVL GM+VVRK+E+ S +P V+I++ G++ +
Sbjct: 116 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEV 169
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 118/167 (70%), Gaps = 7/167 (4%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
+VYFD+E G+PIGR+V L+ VPKT ENFRALCTGEKG G Y GS FHR+I
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM+Q +SI+G F DENFK H PG+LSMANAGP+TNGSQFFITTV
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
WLDG+HVVFG+V+ G D+V+K+E+ G SG K+++V++ SGE+
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
KV+FDI + GRI+ LF P+T ENFRALCTGEK IG GK L+YK S FHRII
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM Q ESI+G SF DENF +KH PG+LSMANAGP+TN SQF IT V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
WLDG+HVVFGKV+ GM+VVR++E EG +SG K VVI++ GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 192 bits (488), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 21 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 73
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 74 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 133
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 134 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 10 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 62
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 63 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 122
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 123 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+L+MANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 93/166 (56%), Positives = 115/166 (69%), Gaps = 7/166 (4%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
+VY DI++G KP GRI L VP T ENFR LCT EKG G +KGSSFHRII
Sbjct: 14 QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHRII 66
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P F Q +SI+G+ F DENF LKHTGPG+LS AN+GP+TNGSQFF+T
Sbjct: 67 PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
T WLDG+HVVFG+V G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 127 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
+IIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55 KIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV GM++V ++ G ++G+ K+ I++ G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 6 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 58
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 59 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 118
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG HVVFGKV GM++V +E G ++G+ K+ I++ G++
Sbjct: 119 CTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP FM Q +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFG V GM++V +E G ++G+ K+ I++ G++
Sbjct: 114 CTAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
+V+FD+++GG+ +GRIV+ LF VPKT ENFRALCTGEKGIG + GKPL++KG FHRI
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 89 IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
I FMIQ ESI+GE F DENF KH G+LSMANAG +TNGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
V T LDG+HVVFG+V+ GM V + +E + +P VI+ GE+
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 119/167 (71%), Gaps = 7/167 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
V+F+I + KP GRIV L+ +AVPKT +NFR L TG+ G G YK S FHR+IP
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
FM+Q +SI+GE FADENF++KHT PG+LSMANAG +TNGSQFFITTV
Sbjct: 58 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 117
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
TSWLDG+HVVFG+V+ G+D+VRK+E +G SG+ + + I++ G +A
Sbjct: 118 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/179 (55%), Positives = 119/179 (66%), Gaps = 8/179 (4%)
Query: 21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYY 80
R+ VT KV+FD+ +G K +GRIV+GLFGK VPKTVENF AL TGEKG G Y
Sbjct: 8 RKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------Y 60
Query: 81 KGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTN 140
KGS FHR+I FMIQ SI+GE+F DENFKLKH G G +SMANAGPDTN
Sbjct: 61 KGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTN 120
Query: 141 GSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
GSQFFIT +WLDG+HVVFGKV+ GM VV IE + + P + I NSG++ +
Sbjct: 121 GSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
VT KV+FD+ +G K +GRIV+GLFG VPKTVENF AL TGEKG G YKGS FH
Sbjct: 6 VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFH 58
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
R+I FMIQ SI+GE+F DENFKLKH G G +SMANAGPDTNGSQFFI
Sbjct: 59 RVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 118
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
T +WLDG+HVVFGKVL GM VV IE + + P + I NSG++ +
Sbjct: 119 TLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 117/164 (71%), Gaps = 7/164 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
V+F+I + KP GRIV L+ +AVPKT +NFR L TG+ G G YK S FHR+IP
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
FM+Q +SI+GE FADENF++KHT PG+LSMANAG +TNGSQFFITTV
Sbjct: 59 QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 118
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
TSWLDG+HVVFG+V+ G+D+VRK+E +G SG+ + + I++ G
Sbjct: 119 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 183 bits (464), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 111/170 (65%), Gaps = 7/170 (4%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FDI V G+P+GR+ LF VPKT ENFRAL TGEKG G YKGS FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
RIIP F Q +SI+GE F DENF LKHTGPG+LS ANAGP+TNGSQFFI
Sbjct: 54 RIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
T T WLDG+HVVFGKV G ++V E G ++G+ K+ I++ G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 7/167 (4%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
+V+FDI +G GRIVM L VP+T ENFRALCTGE+G G Y FHR+I
Sbjct: 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVI 64
Query: 90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
P FM Q +SI+G F DENF+L+H G GVLSMAN+GP+TNGSQFFI T
Sbjct: 65 PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
WLDG+HVVFG+V+ G +VV+K+E+ G +SG+ K V+IS GE+
Sbjct: 125 KCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 113/172 (65%), Gaps = 9/172 (5%)
Query: 26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
+VT KVYFD+ + +P+GRI +GLFGK P T ENFR LCTGE G G YK S F
Sbjct: 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 86 HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
HR+I +FMIQ +SI+GE FADEN +KH G LSMANAGP+TNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 196
ITT T WLDGRHVVFGKVL GMDVV +IE S + P V I SGE+
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Query: 26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
+VT KVYFD+ + +P+GRI +GLFGK P T ENFR LCTGE G G YK S F
Sbjct: 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 86 HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
HR+I +FMIQ +SI+GE FADEN +KH G LSMANAGP+TNGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 196
ITT T WLDG HVVFGKVL GMDVV +IE S + P V I SGE+
Sbjct: 121 ITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 117/169 (69%), Gaps = 9/169 (5%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
VT KVYFDI +G +P+GR+V+GLFG VPKTVENF+ L +GE G G YKGS FH
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFH 56
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
R+I +FMIQ +SI+G F DEN K+KH G +SMANAGP++NGSQFF+
Sbjct: 57 RVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFV 115
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSG 194
TT T WLDGRHVVFGKV+ GMDVV+K+E + + +PK V I++ G
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 3/171 (1%)
Query: 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
V V+FD+ +GG+ +GR+ + LF VPKT ENFR CTGE K G P+ YKGS+FH
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFH 66
Query: 87 RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
R+I FMIQ SI+ FADENFKL+H+ PG+LSMAN+GP TNG QFFI
Sbjct: 67 RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 196
T WLDG+HVVFGK++ G+ V+RKIE + +PK VVIS GEM
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
+ +FDI + +P GR+V LF PKT ENFR LCTGEKG GKS KPL+YK FHR+
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 89 IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
+ FM+Q ESI+G F DE+F +KH +LSMAN G DTNGSQFFITT
Sbjct: 88 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG-EPKSKVVISNSGEM 196
T LDG HVVFG+V+SG +VVR+IE + + +P ++V I + GE+
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
+ +FDI + +P GR+V LF PKT ENFR LCTGEKG GKS KPL+YK FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 89 IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
+ FM+Q ESI+G F DE+F +KH +LSMAN G DTNGSQFFITT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG-EPKSKVVISNSGEM 196
T LDG HVVFG+V+SG +VVR+IE + + +P ++V I + GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
+ +FDI + +P GR+V LF PKT ENFR LCTGEKG GKS KPL+YK FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 89 IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
+ FM+Q ESI+G F DE+F +KH +LSMAN G DTNGSQFFITT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG-EPKSKVVISNSGEM 196
T LDG HVVFG+V+SG +VVR+IE + + +P ++V I + GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGS 83
+K +V+ D+ + G GRIVM L+ P+T NF LCTG G GK SGKPL+YKGS
Sbjct: 3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 84 SFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQ 143
+FHR+I +FMIQ ESI+G F DE F +KH P V+SMAN GP+TNGSQ
Sbjct: 63 TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 122
Query: 144 FFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEMA 197
FFITT L+ HVVFGKV+SG +VV KIE S P + VVI N GE+
Sbjct: 123 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 104/166 (62%), Gaps = 9/166 (5%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
VYFD+ + +GRIVM L VPKT +NFR LC KG G YKGS+FHRIIP
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIP 82
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
FM+Q SI+GE F DENF+LKHT G+LSMAN G TNGSQFFIT
Sbjct: 83 GFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGK 142
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS--KVVISNSG 194
T WLD +HVVFG+V+ GMDVV KI G +SG+ K ++ I + G
Sbjct: 143 TQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 162 bits (411), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
V+FD+ G+P+GRI M LF VP+T ENFRALCTGEKG G +K S FHR+IP
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIP 61
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
F+ Q +SI+G+ F DENF +KHTGPG+LSMAN G +TN SQF IT
Sbjct: 62 DFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKK 121
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
LD +HVVFG V GMD V+KIE+ G G ++ I+ G++
Sbjct: 122 AEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 160 bits (404), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 108/176 (61%), Gaps = 16/176 (9%)
Query: 30 KVYFDIE-----VGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSS 84
+V+FD+E +GRIV LF K VPKT +NFR LC G G Y+ S+
Sbjct: 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56
Query: 85 FHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQF 144
FHRIIP+FMIQ SI+G+ FADENF KH G+LSMANAGP+TNGSQF
Sbjct: 57 FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 145 FITTVITSWLDGRHVVFGKVLS--GMDVVRKIEAEGRQSGEPKSKVV--ISNSGEM 196
FITT +TSWLDG+HVVFG+V VV++IEA G SG +S I N GE+
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
+ +FDIE+ +P+GRI+ LF PKT +NF LC+GEKG+GK+ GK L YKGS+FHR+
Sbjct: 21 QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 89 IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
+ +FMIQ ESI+G F DENF LKH +LSMAN G TNGSQFFITT
Sbjct: 81 VKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEA-EGRQSGEPKSKVVISNSGEMA 197
LDG HVVFG V+SG +V+ +IE + + P + V + + G +A
Sbjct: 141 KPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 31 VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
V+ DI +G +G+ LF VPKT ENFR CTGE + + P+ YK + FHR+I
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIK 119
Query: 91 SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
FMIQ SI+GE F DENF +KH G+LSMAN+GP+TNG QFFITT
Sbjct: 120 EFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKK 179
Query: 151 TSWLDGRHVVFGKVLSG--MDVVRKIE 175
WLDG++VVFG+++ + +++KIE
Sbjct: 180 CEWLDGKNVVFGRIIDNDSLLLLKKIE 206
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G IV+ L+ K PKT +NF L +G YY G+ FHRII FMIQ
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTG 69
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
SI+G+ F DE + LK TG G+L+MANAGPDTNGSQFF+T T WLDG+H +
Sbjct: 70 TGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128
Query: 161 FGKVLSGMDVVRKI 174
FG+V G+ +V ++
Sbjct: 129 FGRVCQGIGMVNRV 142
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G IV+ L+ K PKT +NF L +G YY G+ FHRII FMIQ
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTG 69
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
SI+G+ F DE + LK TG G+L+MANAGPDTNGSQFF+T T WLDG+H +
Sbjct: 70 TGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128
Query: 161 FGKVLSGMDVVRKI 174
FG+V G+ +V ++
Sbjct: 129 FGRVCQGIGMVNRV 142
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G IV+ L+ K PKT +NF L +G YY G+ FHRII FMIQ
Sbjct: 20 MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTG 69
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
SI+G+ F DE + LK TG G+L+MANAGPDTNGSQFF+T T WLDG+H +
Sbjct: 70 TGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128
Query: 161 FGKVLSGMDVVRKI 174
FG+V G+ +V ++
Sbjct: 129 FGRVCQGIGMVNRV 142
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G I LF PKTVENF C + YY G +FHRII FMIQ
Sbjct: 30 MGDIHTKLFPVECPKTVENF---CVHSRN-------GYYNGHTFHRIIKGFMIQTGDPTG 79
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
ESI+G F DE + L+H P LSMANAG +TNGSQFFIT V T WLD +H V
Sbjct: 80 TGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTV 138
Query: 161 FGKVLSGMDVVRKI 174
FG+V GM+VV++I
Sbjct: 139 FGRVTKGMEVVQRI 152
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G I + LF K KTV+NF YY FHR+I FM+Q
Sbjct: 14 MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSG 63
Query: 102 XXXXXXESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
ESI+G F DE F L H+ P ++SMAN GP+TNGSQFFITTV WLD +H V
Sbjct: 64 DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 161 FGKVLSGMDVVRKIE 175
FGKV G +V IE
Sbjct: 123 FGKVTQGSKIVLDIE 137
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 16/153 (10%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G + + L PKT ENF LC K YY G+ FHR I +F+IQ
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 103 XXXXXESIFGESFADENFK--LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
ES +G+ F DE F+ L HTG G+LSMAN+GP++N SQFFIT ++LD +H +
Sbjct: 79 GTGG-ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 161 FGKVLSGMDVVRKIE--AEGRQSGEPKSKVVIS 191
FG+V+ G DV+ +E ++ PK ++ I
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRID 169
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G + L+ PKT NF LC E G +Y + FHR+IP+F+IQ
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPTG 96
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
+SI+GE F DE N +LKHTG G+LSM+N GP+TN SQFFIT LDG+H +
Sbjct: 97 TGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155
Query: 161 FGKVLSGMDVVRKI 174
F +V M + I
Sbjct: 156 FARVSKNMTCIENI 169
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G I + +F + PKT ENF ALC YY G FHR I FM+Q
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 102 XXXXXXESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
SI+G+ F DE + LKH GV+SMAN GP+TNGSQFFIT LD ++ V
Sbjct: 65 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 161 FGKVLSGMDVVRKIE 175
FGKV+ G++ + ++E
Sbjct: 124 FGKVIDGLETLDELE 138
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 42 IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
+G I + +F + PKT ENF ALC YY G FHR I FM+Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 102 XXXXXXESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
SI+G+ F DE + LKH GV+SMAN GP+TNGSQFFIT LD ++ V
Sbjct: 59 TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 161 FGKVLSGMDVVRKIE 175
FGKV+ G++ + ++E
Sbjct: 118 FGKVIDGLETLDELE 132
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGI---GKSGKP--LYYKGSSFHRIIPSFMIQXX 97
G I + LFG PKTV NF L G K SG P +Y G+ FHR+I FMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 98 XXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGR 157
F + F E L+ P +L+MANAGP TNGSQFFIT T L+ R
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 158 HVVFGKVLSG-----MDVVRKIEAEGRQSGEPKSKVVI 190
H +FG+V+ ++ + K +G P VVI
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGND--RPTDPVVI 185
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G + LF PK +NF AL SG YYK + FH+ I F+IQ
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 103 XXXXXESIFGESFADENF-KLKHTGPGVLSMANAG----PDTNGSQFFITTVITSWLDGR 157
ESI+G F DE + +LK+ G+LSMA+ G P+TNGSQFFIT L+G
Sbjct: 76 GKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 158 HVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISN 192
+V+FGK++ G + + +E +S +P +++I +
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G I + L+ K PK NF LC YY + FHR++P F++Q
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGT 83
Query: 103 XXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
ESI+G F DE + +L+ G+++MANAG NGSQFF T L+ +H +F
Sbjct: 84 GSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIF 142
Query: 162 GKV 164
GKV
Sbjct: 143 GKV 145
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G + + L P+ ++F LC + Y+ + FHR I +FMIQ
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 103 XXXXXESIF-----------GESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
+ + G F DE + +L H G GVLSMAN G +N S+FFIT
Sbjct: 66 QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIE 175
L+ +H +FG+V+ G+DV+R+ E
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWE 150
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQ--XXXXX 100
G IV+ F P+TV+NF C + +Y + FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 101 XXXXXXXESIFGESFADENFKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR-- 157
E I E+ N LK+T G L+MA P + +QFFI V +L+
Sbjct: 59 MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 158 ------HVVFGKVLSGMDVVRKIE--AEGR---QSGEPKSKVVI 190
+ VF +V+ GMDVV KI+ A GR PK V+I
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 72/164 (43%), Gaps = 31/164 (18%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQ--XXXXX 100
G IV+ F P+TV+NF C + +Y + FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 101 XXXXXXXESIFGESFADENFKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR-- 157
E I E+ N LK+T G L+MA P + +QFFI V +L+
Sbjct: 59 MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 158 ------HVVFGKVLSGMDVVRKIE--AEGR---QSGEPKSKVVI 190
+ VF +V+ GMD V KI+ A GR PK V+I
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G I + L + P +V+NF SG +Y ++FHR+IP FMIQ
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 103 XXXXXESIFGESFADENFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLD-GR--- 157
+ ++ AD L++T G ++MA A D+ SQFFI ++LD G+
Sbjct: 64 MQQKKPNPPIKNEADNG--LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 158 -HVVFGKVLSGMDVVRKI 174
+ VFGKV+ GMDV KI
Sbjct: 121 GYAVFGKVVKGMDVADKI 138
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G I + L + P +V+NF SG +Y ++FHR+IP FMIQ
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 103 XXXXXESIFGESFADENFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLD-GR--- 157
+ ++ AD L++T G ++MA A D+ SQFFI ++LD G+
Sbjct: 64 MQQKKPNPPIKNEADNG--LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 158 -HVVFGKVLSGMDVVRKI 174
+ VFGKV+ GMDV KI
Sbjct: 121 GYAVFGKVVKGMDVADKI 138
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGE------KGIGKSGKPLY---- 79
+VY DI + + IGR+ + LF A P VENF L G+ G GK +
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 80 YKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGES-----FADENFKLKHTGPGVLSMAN 134
Y+G FH ++ + I +++ + F D + H G+LS+
Sbjct: 76 YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 135 AGPDTNGSQFFITTVITSW-----------LDGRHVVFGKVLSGMDVVRKIEA 176
D +G++++ +T + + LD VV G+V G+DV+ KI +
Sbjct: 133 PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINS 185
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 55/179 (30%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G I + LF P+T NF K +Y G+ FHR+I FMIQ
Sbjct: 9 GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQ------- 51
Query: 103 XXXXXESIFGESFADENFKLKHTGPGVLSMANAG---------------PDTNGSQFFIT 147
G F + K K T + + AN G P + +QFFI
Sbjct: 52 ---------GGGF-EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFIN 101
Query: 148 TVITSWLDGR--------HVVFGKVLSGMDVVRKIE--AEGRQSGE---PKSKVVISNS 193
++LD + VFG+V+ G DVV +I+ A G ++G P V+I +
Sbjct: 102 VKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKA 160
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
G I + L PKTVENF L +KG +Y G+ FHR+I FMIQ
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQGGGFEPG 62
Query: 103 XXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGR---- 157
A+E N LK+ + P + +QFFI +L+
Sbjct: 63 LKQKPTD---APIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTP 119
Query: 158 ----HVVFGKVLSGMDVVRKIEA-----EGRQSGEPKSKVVI 190
+ VFGKV+ G D+V KI+A +G P VVI
Sbjct: 120 QGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 31/156 (19%)
Query: 30 KVYFDIEVGGK-----PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSS 84
+YF GK +G + + L+ + P NF LC +G YY +
Sbjct: 13 NLYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCL--EG--------YYVNTI 62
Query: 85 FHRIIPSFMIQXXXXXXXXXXXXESIF-GESFADENF-KLKHTGPGVLSMANAGPD---- 138
FHR++ F++Q ++ F G+ F E +LK G++ +AN G
Sbjct: 63 FHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDA 122
Query: 139 ----------TNGSQFFITTVITSWLDGRHVVFGKV 164
TNG+QFFIT L+ + +FGKV
Sbjct: 123 ENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
>pdb|4HD1|A Chain A, Crystal Structure Of Squalene Synthase Hpnc From
Alicyclobacillus Acidocaldarius
Length = 294
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 12 LLWALEGNSREELEKVTHKVYFDIE----VGGKPIGRIVMGLFGKAVPKTVENFRALCTG 67
L +E N R++ K T+ + D+ P+GR+V+G+FG + A CT
Sbjct: 106 FLRLIEANRRDQ-RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCLDDERARLSDATCTA 164
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 320 LKALCLGAKGVG-LGRPFLYANSCYGR 345
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 318 LKALCLGAKGVG-LGRPFLYANSCYGR 343
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 419 LKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 419 LKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 419 LKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 419 LKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 419 LKALCLGAKGVG-LGRPFLYANSCYGR 444
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 61 FRALCTGEKGIGKSGKPLYYKGSSFHR 87
+ALC G KG+G G+P Y S + R
Sbjct: 414 LKALCLGAKGVG-LGRPFLYANSCYGR 439
>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
Length = 344
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 171 VRKIEAEGRQSGEPKSKVVISNSGEM 196
RKI AEG Q G+P S+ + +GEM
Sbjct: 217 CRKI-AEGAQQGDPLSRYIFRKAGEM 241
>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
Length = 347
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 171 VRKIEAEGRQSGEPKSKVVISNSGEM 196
RKI AEG Q G+P S+ + +GEM
Sbjct: 220 CRKI-AEGAQQGDPLSRYIFRKAGEM 244
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 8 VSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTG 67
++ ++ + EG +RE +E +H + + +P TV FR +
Sbjct: 50 LTYSVFYTKEGIARERVENTSHPGEMQVTIQ-------------NLMPATVYIFRVMAQN 96
Query: 68 EKGIGKSGKPL 78
+ G G+S PL
Sbjct: 97 KHGSGESSAPL 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,863,419
Number of Sequences: 62578
Number of extensions: 240144
Number of successful extensions: 791
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 92
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)