Query 029122
Match_columns 198
No_of_seqs 139 out of 1261
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 1.8E-56 4E-61 375.7 14.9 171 27-197 7-179 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 6.1E-55 1.3E-59 339.1 16.7 171 21-198 32-204 (217)
3 PTZ00060 cyclophilin; Provisio 100.0 1.2E-49 2.7E-54 315.4 20.8 169 28-197 15-183 (183)
4 cd01926 cyclophilin_ABH_like c 100.0 1.1E-49 2.4E-54 310.8 20.0 164 29-194 1-164 (164)
5 KOG0879 U-snRNP-associated cyc 100.0 2.4E-48 5.2E-53 285.9 13.4 173 22-196 4-177 (177)
6 PTZ00221 cyclophilin; Provisio 100.0 2.2E-47 4.8E-52 312.8 20.6 170 24-197 48-220 (249)
7 PLN03149 peptidyl-prolyl isome 100.0 2.5E-47 5.4E-52 302.7 18.4 167 28-196 18-186 (186)
8 cd01923 cyclophilin_RING cyclo 100.0 3.4E-44 7.3E-49 278.6 18.6 147 40-197 6-154 (159)
9 KOG0881 Cyclophilin type pepti 100.0 1E-45 2.2E-50 269.1 9.0 153 28-196 9-163 (164)
10 cd01928 Cyclophilin_PPIL3_like 100.0 4.6E-44 1E-48 276.1 17.9 144 40-194 7-152 (153)
11 COG0652 PpiB Peptidyl-prolyl c 100.0 2.7E-44 5.8E-49 276.1 15.3 146 38-196 4-157 (158)
12 cd01927 cyclophilin_WD40 cyclo 100.0 7E-44 1.5E-48 273.8 17.1 142 40-192 4-147 (148)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 6.8E-44 1.5E-48 273.2 16.5 142 40-192 4-146 (146)
14 PRK10903 peptidyl-prolyl cis-t 100.0 4.2E-43 9.2E-48 279.2 20.8 176 4-197 4-190 (190)
15 cd01921 cyclophilin_RRM cyclop 100.0 3.7E-43 8.1E-48 274.5 17.4 147 40-197 4-160 (166)
16 KOG0111 Cyclophilin-type pepti 100.0 6.2E-44 1.4E-48 282.1 10.5 167 24-197 132-298 (298)
17 cd01925 cyclophilin_CeCYP16-li 100.0 1.2E-41 2.6E-46 267.1 18.5 157 25-197 2-161 (171)
18 PRK10791 peptidyl-prolyl cis-t 100.0 5E-40 1.1E-44 256.2 17.9 144 40-196 6-163 (164)
19 KOG0883 Cyclophilin type, U bo 100.0 5.2E-41 1.1E-45 283.4 12.0 156 27-196 274-431 (518)
20 cd01920 cyclophilin_EcCYP_like 100.0 2.8E-39 6E-44 250.0 16.4 141 40-193 4-155 (155)
21 PF00160 Pro_isomerase: Cyclop 100.0 4.4E-39 9.6E-44 248.4 17.4 150 32-195 1-155 (155)
22 KOG0882 Cyclophilin-related pe 100.0 9.8E-40 2.1E-44 280.2 11.8 144 40-194 411-556 (558)
23 KOG0884 Similar to cyclophilin 100.0 4.5E-39 9.7E-44 233.1 11.8 144 40-194 7-153 (161)
24 cd00317 cyclophilin cyclophili 100.0 2.6E-38 5.6E-43 241.9 16.4 141 40-192 4-146 (146)
25 KOG0865 Cyclophilin type pepti 100.0 5.5E-38 1.2E-42 243.0 9.8 163 27-196 2-167 (167)
26 cd01924 cyclophilin_TLP40_like 100.0 1.5E-36 3.3E-41 239.0 15.7 128 39-176 3-164 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 8.4E-36 1.8E-40 250.7 12.2 161 21-197 5-168 (439)
28 KOG0415 Predicted peptidyl pro 100.0 1.6E-35 3.5E-40 247.7 13.7 148 39-197 6-163 (479)
29 KOG0882 Cyclophilin-related pe 97.8 2.1E-05 4.6E-10 69.2 4.9 140 44-194 113-260 (558)
30 TIGR03268 methan_mark_3 putati 97.2 0.0021 4.5E-08 57.6 8.5 101 43-174 201-301 (503)
31 PRK00969 hypothetical protein; 97.2 0.0018 3.8E-08 58.2 8.0 101 43-174 204-304 (508)
32 COG4070 Predicted peptidyl-pro 96.7 0.0065 1.4E-07 53.0 7.4 102 40-174 200-303 (512)
33 TIGR03268 methan_mark_3 putati 96.6 0.025 5.5E-07 50.9 10.6 113 44-176 376-495 (503)
34 PRK00969 hypothetical protein; 96.2 0.065 1.4E-06 48.4 10.6 112 44-176 379-497 (508)
35 COG4070 Predicted peptidyl-pro 95.5 0.072 1.6E-06 46.7 8.0 116 44-177 377-499 (512)
36 PF12903 DUF3830: Protein of u 95.3 0.13 2.9E-06 39.2 8.0 107 44-175 9-129 (147)
37 PF04126 Cyclophil_like: Cyclo 63.4 7.8 0.00017 28.4 2.8 46 125-175 60-112 (120)
38 PF07172 GRP: Glycine rich pro 57.8 5.5 0.00012 28.2 1.1 12 1-12 1-12 (95)
39 PF05913 DUF871: Bacterial pro 54.3 8.3 0.00018 33.8 1.8 49 126-175 299-348 (357)
40 PF08415 NRPS: Nonribosomal pe 26.0 68 0.0015 20.0 2.3 27 165-192 4-30 (58)
41 COG2164 Uncharacterized conser 25.2 12 0.00025 27.0 -1.6 32 144-175 79-116 (126)
42 PF12396 DUF3659: Protein of u 24.2 97 0.0021 20.2 2.7 27 154-182 16-43 (64)
43 COG0219 CspR Predicted rRNA me 22.6 1.5E+02 0.0032 23.0 3.9 33 45-90 3-35 (155)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-56 Score=375.68 Aligned_cols=171 Identities=63% Similarity=1.062 Sum_probs=163.5
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCC-CCCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGI-GKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR 105 (198)
Q Consensus 27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~-~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~ 105 (198)
.+++|||||+|++.+.|||+||||.|.||+||+||..||+|..|. ..+|+.+.|+|+.||||+++|||||||++.++|.
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 478999999999999999999999999999999999999999985 3679999999999999999999999999999999
Q ss_pred CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCc
Q 029122 106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEP 184 (198)
Q Consensus 106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P 184 (198)
||++|||..|+||++.++|+++++||||+.||++||||||||+.+.||||+.|+|||+||+|++|++.|+... +++.+|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999654 455699
Q ss_pred ccceEEeeeeeec
Q 029122 185 KSKVVISNSGEMA 197 (198)
Q Consensus 185 ~~~i~I~~cg~l~ 197 (198)
..+|.|.+||+|.
T Consensus 167 ~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 167 LADVVISDCGELV 179 (372)
T ss_pred ccceEeccccccc
Confidence 9999999999985
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-55 Score=339.13 Aligned_cols=171 Identities=74% Similarity=1.224 Sum_probs=162.5
Q ss_pred cccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhc-CCCCCCCCCCcccccCCEEEEeecCceEEecCC
Q 029122 21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCT-GEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDF 99 (198)
Q Consensus 21 ~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~-g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~ 99 (198)
.+..|+++++|||||++.+...|||+|+||++.+|+||+||.+||. +.++.+ |.|++||||+|||+|||||.
T Consensus 32 ~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~ 104 (217)
T KOG0880|consen 32 YEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDF 104 (217)
T ss_pred cCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCcc
Confidence 3778899999999999999999999999999999999999999999 666554 99999999999999999999
Q ss_pred cCCCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHh-CC
Q 029122 100 TLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA-EG 178 (198)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~-~~ 178 (198)
..+++.++.++||+.+++|++.++|+++|.|||++.||++||||||||+...++||++|+|||||++|||+|.+|+. ..
T Consensus 105 t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~T 184 (217)
T KOG0880|consen 105 TKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKT 184 (217)
T ss_pred ccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995 45
Q ss_pred CCCCCcccceEEeeeeeecC
Q 029122 179 RQSGEPKSKVVISNSGEMAL 198 (198)
Q Consensus 179 ~~~~~P~~~i~I~~cg~l~~ 198 (198)
+++++|.++++|.+||.|+.
T Consensus 185 D~~dkP~e~v~I~~~g~l~~ 204 (217)
T KOG0880|consen 185 DERDKPLEDVVIANCGELPV 204 (217)
T ss_pred CCCCCccccEEEeecCcccc
Confidence 77899999999999999863
No 3
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.2e-49 Score=315.36 Aligned_cols=169 Identities=65% Similarity=1.083 Sum_probs=157.0
Q ss_pred CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122 28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 107 (198)
Q Consensus 28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~ 107 (198)
+++||||+++++++.|+|+||||.+.||++|+||++||++.+.+ ..|+..||+++.||||+|+++||+||+..+.+.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~-~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVG-SSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCccc-ccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 67899999999999999999999999999999999999876542 24567799999999999999999999887778888
Q ss_pred ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 029122 108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 187 (198)
Q Consensus 108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~ 187 (198)
.++++..+++|...++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|++.++++++|+++
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~ 173 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKP 173 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCC
Confidence 88889899999888999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eEEeeeeeec
Q 029122 188 VVISNSGEMA 197 (198)
Q Consensus 188 i~I~~cg~l~ 197 (198)
|+|.+||+|.
T Consensus 174 v~I~~cg~~~ 183 (183)
T PTZ00060 174 VVVTDCGELQ 183 (183)
T ss_pred eEEEEeEEcC
Confidence 9999999983
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.1e-49 Score=310.82 Aligned_cols=164 Identities=74% Similarity=1.259 Sum_probs=152.1
Q ss_pred cEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc
Q 029122 29 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE 108 (198)
Q Consensus 29 ~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~ 108 (198)
|+||||+.++++++|+|+||||.+.||++|+||++||++.+|++. +..||+++.||||+|+++||+||+..+++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 579999999999999999999999999999999999987665432 445899999999999999999998777778888
Q ss_pred cccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccce
Q 029122 109 SIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKV 188 (198)
Q Consensus 109 ~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i 188 (198)
++++..+++|...++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|+++|
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i 158 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV 158 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence 88999999998889999999999999999999999999999999999999999999999999999998777788999999
Q ss_pred EEeeee
Q 029122 189 VISNSG 194 (198)
Q Consensus 189 ~I~~cg 194 (198)
+|.+||
T Consensus 159 ~I~~cG 164 (164)
T cd01926 159 VIADCG 164 (164)
T ss_pred EEEECC
Confidence 999998
No 5
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-48 Score=285.91 Aligned_cols=173 Identities=57% Similarity=0.975 Sum_probs=162.3
Q ss_pred ccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcC
Q 029122 22 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101 (198)
Q Consensus 22 ~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~ 101 (198)
...++.++-||||+++++.++|||.||||.|.+|++++||.+.|+|+-- +.|+..-|++++||||+++|+|||||..+
T Consensus 4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~ 81 (177)
T KOG0879|consen 4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVN 81 (177)
T ss_pred cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceec
Confidence 3455668999999999999999999999999999999999999998742 55677779999999999999999999999
Q ss_pred CCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-C
Q 029122 102 GDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-Q 180 (198)
Q Consensus 102 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~ 180 (198)
+++.+-.++|+..+++|++.++|+.+|+|||+++|+++++.|||||...+.+||++|+|||||++|+.++++|+.+++ .
T Consensus 82 gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~ 161 (177)
T KOG0879|consen 82 GDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGP 161 (177)
T ss_pred CCCceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998775 6
Q ss_pred CCCcccceEEeeeeee
Q 029122 181 SGEPKSKVVISNSGEM 196 (198)
Q Consensus 181 ~~~P~~~i~I~~cg~l 196 (198)
|++|+.+|.|..||++
T Consensus 162 NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 162 NNKPKLPVVIVQCGEM 177 (177)
T ss_pred CCCCCCcEEEeecccC
Confidence 7899999999999975
No 6
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.2e-47 Score=312.83 Aligned_cols=170 Identities=36% Similarity=0.545 Sum_probs=153.4
Q ss_pred ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCC-CCCcccccCCEEEEeecC-ceEEecCCcC
Q 029122 24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPS-FMIQGGDFTL 101 (198)
Q Consensus 24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~rv~~~-~~iq~Gd~~~ 101 (198)
.+..+++||||+.+++++.|+|+||||.+.||++|+||++||+|..+.+. .|+..+|+++.||||+++ ++||+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 45678899999999999999999999999999999999999998876432 355567999999999986 8999999863
Q ss_pred CCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CC
Q 029122 102 GDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQ 180 (198)
Q Consensus 102 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~ 180 (198)
.+.+++|..+++|+..++|+++|+|+|++.++++++||||||+.++|+||++|+|||||++|||||++|+..+ ++
T Consensus 128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~ 203 (249)
T PTZ00221 128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD 203 (249)
T ss_pred ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence 2345678899999989999999999999999999999999999999999999999999999999999999775 56
Q ss_pred CCCcccceEEeeeeeec
Q 029122 181 SGEPKSKVVISNSGEMA 197 (198)
Q Consensus 181 ~~~P~~~i~I~~cg~l~ 197 (198)
+++|+++|+|.+||+|+
T Consensus 204 ~grP~~~V~I~~Cgvl~ 220 (249)
T PTZ00221 204 VGRPLLPVTVSFCGALT 220 (249)
T ss_pred CCCCCCCeEEEECeEec
Confidence 78999999999999986
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.5e-47 Score=302.70 Aligned_cols=167 Identities=59% Similarity=1.006 Sum_probs=151.2
Q ss_pred CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122 28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 107 (198)
Q Consensus 28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~ 107 (198)
.++||||+.+++++.|+|+||||.+.||++|+||++||++... ..|....|+++.||||+|+++||+||+..+++.++
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 4679999999999999999999999999999999999986531 12222349999999999999999999877788888
Q ss_pred ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE-cCHHHHHHHHhCCC-CCCCcc
Q 029122 108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGR-QSGEPK 185 (198)
Q Consensus 108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~-~~~~P~ 185 (198)
.++++..+++|....+|+++|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++.++ ++++|+
T Consensus 96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~ 175 (186)
T PLN03149 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK 175 (186)
T ss_pred ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence 8889999999988889999999999999999999999999999999999999999999 79999999997765 678999
Q ss_pred cceEEeeeeee
Q 029122 186 SKVVISNSGEM 196 (198)
Q Consensus 186 ~~i~I~~cg~l 196 (198)
++|+|.+||++
T Consensus 176 ~~i~I~~cG~~ 186 (186)
T PLN03149 176 LACVISECGEM 186 (186)
T ss_pred CCeEEEeCEeC
Confidence 99999999985
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.4e-44 Score=278.58 Aligned_cols=147 Identities=48% Similarity=0.822 Sum_probs=135.8
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|+||||++.||++|+||++||+.+ ||+++.||||+|+++||+||+. +++.++.++++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~ 74 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCKKG----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF 74 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHhcC----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence 78999999999999999999999999643 8999999999999999999986 667788888899998885
Q ss_pred c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeeeeec
Q 029122 120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSGEMA 197 (198)
Q Consensus 120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg~l~ 197 (198)
. .++|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|+..+ +++++|+++|+|.+|+++.
T Consensus 75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~ 154 (159)
T cd01923 75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV 154 (159)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence 4 6789899999999999999999999999999999999999999999999999999765 4678999999999999975
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=269.06 Aligned_cols=153 Identities=51% Similarity=0.905 Sum_probs=141.7
Q ss_pred CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122 28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG 107 (198)
Q Consensus 28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~ 107 (198)
.+.|+++ |++|.|++|||-+.||++|+||.+|++ +| ||+|+.||||+++|+||||||+ +.++++
T Consensus 9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLar--rg--------YYn~v~FHRii~DFmiQGGDPT-GTGRGG 72 (164)
T KOG0881|consen 9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELAR--RG--------YYNGVIFHRIIKDFMIQGGDPT-GTGRGG 72 (164)
T ss_pred CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHHh--cc--------cccceeeeehhhhheeecCCCC-CCCCCc
Confidence 4678888 899999999999999999999999994 33 9999999999999999999997 899999
Q ss_pred ccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhC-CCCCCCcc
Q 029122 108 ESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE-GRQSGEPK 185 (198)
Q Consensus 108 ~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~-~~~~~~P~ 185 (198)
.++||..|++|-. .++|..+|.|||++.||++++|||||||.+.++||++|++||||+.||+|+.++..+ .+.++||+
T Consensus 73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi 152 (164)
T KOG0881|consen 73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI 152 (164)
T ss_pred cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence 9999999999865 689999999999999999999999999999999999999999999999999999955 45679999
Q ss_pred cceEEeeeeee
Q 029122 186 SKVVISNSGEM 196 (198)
Q Consensus 186 ~~i~I~~cg~l 196 (198)
.+++|.++-.+
T Consensus 153 ~~~kIika~~~ 163 (164)
T KOG0881|consen 153 DEVKIIKAYPS 163 (164)
T ss_pred cceeeEeeecC
Confidence 99999987654
No 10
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.6e-44 Score=276.14 Aligned_cols=144 Identities=47% Similarity=0.793 Sum_probs=132.9
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|+||||++.||++|+||++||+++ ||+++.||||+|++++|+||+. +++.++.++++..+++|.
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 75 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCASG----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF 75 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHhcC----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence 88999999999999999999999999754 8999999999999999999986 667777888888899887
Q ss_pred c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 029122 120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG 194 (198)
Q Consensus 120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg 194 (198)
. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+ +++++|+.+|+|.+|.
T Consensus 76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 5 5788899999999999999999999999999999999999999999999999999765 4678999999999984
No 11
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=276.13 Aligned_cols=146 Identities=49% Similarity=0.781 Sum_probs=129.5
Q ss_pred CCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccC
Q 029122 38 GGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFAD 117 (198)
Q Consensus 38 ~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~ 117 (198)
..|+.|+|+||||++.||+||+||++||+.+ ||+|+.||||+|+|||||||+..+.+.+++ +.++++
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~ 70 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVKEG----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD 70 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHHcC----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence 3488999999999999999999999999632 899999999999999999999977677776 478999
Q ss_pred cccCcccCC--CeEEEeeecC-CCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCC-----CCCcccceE
Q 029122 118 ENFKLKHTG--PGVLSMANAG-PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPKSKVV 189 (198)
Q Consensus 118 e~~~~~~~~--~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~~~i~ 189 (198)
|+....|++ +|+||||+.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|+...+. .+.|..+++
T Consensus 71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~ 150 (158)
T COG0652 71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK 150 (158)
T ss_pred cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence 988777776 9999999988 99999999999999999999999999999999999999975433 356778888
Q ss_pred Eeeeeee
Q 029122 190 ISNSGEM 196 (198)
Q Consensus 190 I~~cg~l 196 (198)
|.+..++
T Consensus 151 i~~~~~~ 157 (158)
T COG0652 151 ILSVKIV 157 (158)
T ss_pred Eeeeeee
Confidence 8887765
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=7e-44 Score=273.76 Aligned_cols=142 Identities=55% Similarity=0.891 Sum_probs=131.5
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|++|+|+||||++.||++|+||++||+++ ||+++.||||+|++++|+||+. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~ 72 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHARNG----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF 72 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence 78999999999999999999999999754 8999999999999999999986 677778888888898887
Q ss_pred c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEee
Q 029122 120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISN 192 (198)
Q Consensus 120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~ 192 (198)
. .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|+..+ +++++|+++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 5 7889889999999999999999999999999999999999999999999999999766 46789999999985
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=6.8e-44 Score=273.20 Aligned_cols=142 Identities=52% Similarity=0.906 Sum_probs=131.0
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|+||||.+.||++|+||++||+.+ ||+++.||||+|++++|+||+. +++.++.++++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~ 72 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAKRG----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI 72 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence 78999999999999999999999999644 8999999999999999999986 566777788888888884
Q ss_pred -cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccceEEee
Q 029122 120 -FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN 192 (198)
Q Consensus 120 -~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i~I~~ 192 (198)
..++|.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++++++|.++|+|.+
T Consensus 73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~ 146 (146)
T cd01922 73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK 146 (146)
T ss_pred ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence 4788989999999999999999999999999999999999999999999999999987776889999999974
No 14
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=4.2e-43 Score=279.23 Aligned_cols=176 Identities=30% Similarity=0.417 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHhccCccccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCC
Q 029122 4 KTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGS 83 (198)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~ 83 (198)
+++++++++++..+..+....++-+.+|.++ |+.|+|+||||++.||++|+||++||+.+ ||||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~ 68 (190)
T PRK10903 4 STLAAMAAVFALSALSPAALAAKGDPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYVNSG----------FYNNT 68 (190)
T ss_pred HHHHHHHHHHHHhhccccccccCCCcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCc
Confidence 4444444444322333333355566677776 78999999999999999999999999643 89999
Q ss_pred EEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCcccCCCeEEEeeecC-CCCCCceEEEEccCCcCCCC-----C
Q 029122 84 SFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----R 157 (198)
Q Consensus 84 ~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld~-----~ 157 (198)
.||||+|+|++|||++....+. ..++.++++|.....|+.+|+|+|++.+ +++++|||||++++.++||+ +
T Consensus 69 ~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ 145 (190)
T PRK10903 69 TFHRVIPGFMIQGGGFTEQMQQ---KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFG 145 (190)
T ss_pred EEEEEeCCceEEeCCcCCCCCC---CCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCC
Confidence 9999999999999997643221 2235567777555556789999999864 89999999999999999984 8
Q ss_pred ceEEEEEEcCHHHHHHHHhCCCC-----CCCcccceEEeeeeeec
Q 029122 158 HVVFGKVLSGMDVVRKIEAEGRQ-----SGEPKSKVVISNSGEMA 197 (198)
Q Consensus 158 ~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~~~i~I~~cg~l~ 197 (198)
|+|||||++|||||++|+..+++ +++|.++|+|.+|+++.
T Consensus 146 ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~ 190 (190)
T PRK10903 146 YAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190 (190)
T ss_pred ccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence 99999999999999999976653 36999999999999873
No 15
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=3.7e-43 Score=274.52 Aligned_cols=147 Identities=39% Similarity=0.656 Sum_probs=130.0
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccC-------
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG------- 112 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~------- 112 (198)
|+.|+|+||||++.||++|+||++||+++ ||+++.||||+|+++||+||+. +++.++.++++
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~ 72 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCKLK----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA 72 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHhcC----------CcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence 78999999999999999999999999754 8999999999999999999986 55666665553
Q ss_pred CcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccC-CcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceE
Q 029122 113 ESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVV 189 (198)
Q Consensus 113 ~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~ 189 (198)
..+++|. ..++|+++|+|+|++.++++++|||||++++ .|+||++|+|||||++|||||++|+..+ +++++|+++|+
T Consensus 73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~ 152 (166)
T cd01921 73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR 152 (166)
T ss_pred cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence 2455554 3678989999999999999999999999975 8999999999999999999999999655 46789999999
Q ss_pred Eeeeeeec
Q 029122 190 ISNSGEMA 197 (198)
Q Consensus 190 I~~cg~l~ 197 (198)
|.+|++|+
T Consensus 153 I~~~~i~~ 160 (166)
T cd01921 153 IKHTHILD 160 (166)
T ss_pred EEEEEEEC
Confidence 99999985
No 16
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-44 Score=282.14 Aligned_cols=167 Identities=62% Similarity=1.043 Sum_probs=161.6
Q ss_pred ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122 24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD 103 (198)
Q Consensus 24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~ 103 (198)
+...+++||+|+.+.+...|||+++|..|..|.+++||..||++++|.+ |.|++||||+|.|++||||.++++
T Consensus 132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~n 204 (298)
T KOG0111|consen 132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGN 204 (298)
T ss_pred hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCC
Confidence 4456788999999999999999999999999999999999999999876 999999999999999999999999
Q ss_pred CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122 104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 183 (198)
Q Consensus 104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~ 183 (198)
+.++.++||..+.+|++.++|..+|+|||+++|++++||||||+.....+||++|+|||.|++||+|+++++..+++.++
T Consensus 205 gtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgk 284 (298)
T KOG0111|consen 205 GTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK 284 (298)
T ss_pred CCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEeeeeeec
Q 029122 184 PKSKVVISNSGEMA 197 (198)
Q Consensus 184 P~~~i~I~~cg~l~ 197 (198)
|.+.|+|.+||++.
T Consensus 285 p~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 285 PQQKVKIVECGEIE 298 (298)
T ss_pred cceEEEEEeccccC
Confidence 99999999999874
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.2e-41 Score=267.12 Aligned_cols=157 Identities=39% Similarity=0.668 Sum_probs=140.9
Q ss_pred cccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCC
Q 029122 25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG 104 (198)
Q Consensus 25 ~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~ 104 (198)
|+.+.+|.++ |++|+|+||||++.||++|+||++||+.+ ||+++.||||+|+++||+||+. +++
T Consensus 2 ~~~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g 65 (171)
T cd01925 2 PPTTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-GTG 65 (171)
T ss_pred CCcccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHhcC----------CCCCCEEEEEcCCcEEEccccC-CCC
Confidence 5566778887 89999999999999999999999999644 8999999999999999999986 667
Q ss_pred CCCccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE-cCHHHHHHHHhCC-CCC
Q 029122 105 RGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEG-RQS 181 (198)
Q Consensus 105 ~~~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~-~~~ 181 (198)
.++.++++..+++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||+ ++++++++|+... +++
T Consensus 66 ~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~ 145 (171)
T cd01925 66 TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKD 145 (171)
T ss_pred ccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCC
Confidence 7888888988988865 577889999999999999999999999999999999999999999 4688899999654 467
Q ss_pred CCcccceEEeeeeeec
Q 029122 182 GEPKSKVVISNSGEMA 197 (198)
Q Consensus 182 ~~P~~~i~I~~cg~l~ 197 (198)
++|.++|+|.+|++++
T Consensus 146 ~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 146 ERPVYPPKITSVEVLE 161 (171)
T ss_pred CCcCCCeEEEEEEEEc
Confidence 8999999999999875
No 18
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=5e-40 Score=256.17 Aligned_cols=144 Identities=35% Similarity=0.581 Sum_probs=120.8
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|+|+||++.||++|+||++||+.+ ||+++.||||+|+|+||||++..+.+. ..++..+++|.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~ 72 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA 72 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcc
Confidence 88999999999999999999999999654 899999999999999999997543322 12345666664
Q ss_pred cCcccCCCeEEEeeecC-CCCCCceEEEEccCCcCCC-------C-CceEEEEEEcCHHHHHHHHhCCCC-----CCCcc
Q 029122 120 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLD-------G-RHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPK 185 (198)
Q Consensus 120 ~~~~~~~~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld-------~-~~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~ 185 (198)
....++.+|+|+|++.+ +++++|||||++++.++|| + +|+|||||++|||||++|++.++. +++|.
T Consensus 73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~ 152 (164)
T PRK10791 73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_pred cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence 43334479999999875 8999999999999988776 3 699999999999999999976653 36999
Q ss_pred cceEEeeeeee
Q 029122 186 SKVVISNSGEM 196 (198)
Q Consensus 186 ~~i~I~~cg~l 196 (198)
.+|+|.+|.+.
T Consensus 153 ~~v~I~~~~i~ 163 (164)
T PRK10791 153 EDVIIESVTVS 163 (164)
T ss_pred CCeEEEEEEEe
Confidence 99999999764
No 19
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-41 Score=283.45 Aligned_cols=156 Identities=46% Similarity=0.792 Sum_probs=142.1
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG 106 (198)
Q Consensus 27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~ 106 (198)
++++-|+.+. |+.|.|.+||++|.+|.+|+||++||.. | ||+|+.|||.+.|||||||||+ +.|.|
T Consensus 274 vKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~--g--------YYnnt~FHRsIrnFmiQGGDPT-GTG~G 339 (518)
T KOG0883|consen 274 VKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKN--G--------YYNNTIFHRSIRNFMIQGGDPT-GTGRG 339 (518)
T ss_pred ccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhc--c--------cccchHHHHHHHHHeeeCCCCC-CCCCC
Confidence 3444566664 5699999999999999999999999943 3 9999999999999999999997 99999
Q ss_pred CccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCc
Q 029122 107 GESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEP 184 (198)
Q Consensus 107 ~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P 184 (198)
|+++||.+|.+|.. .+.|+.||+|||+++|++++||||||+.+++.+||++|+|||||+.|+++|++|+.++ +++++|
T Consensus 340 GeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP 419 (518)
T KOG0883|consen 340 GESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRP 419 (518)
T ss_pred CccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCc
Confidence 99999999999964 6999999999999999999999999999999999999999999999999999999765 567999
Q ss_pred ccceEEeeeeee
Q 029122 185 KSKVVISNSGEM 196 (198)
Q Consensus 185 ~~~i~I~~cg~l 196 (198)
+.+|+|.+.-+.
T Consensus 420 ~e~I~i~~~~VF 431 (518)
T KOG0883|consen 420 KEEIKIEDAIVF 431 (518)
T ss_pred ccceEEeeeEEe
Confidence 999999987653
No 20
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.8e-39 Score=250.02 Aligned_cols=141 Identities=36% Similarity=0.527 Sum_probs=119.7
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|+||||++.||++|+||++||+.+ ||+++.||||+|+++||+|++....+. ..++..+++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~ 70 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVRKG----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA 70 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence 78999999999999999999999999643 899999999999999999998744322 12345666665
Q ss_pred cCcccCCCeEEEeeecC-CCCCCceEEEEccCCcCCCC-----CceEEEEEEcCHHHHHHHHhCCCCC-----CCcccce
Q 029122 120 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----RHVVFGKVLSGMDVVRKIEAEGRQS-----GEPKSKV 188 (198)
Q Consensus 120 ~~~~~~~~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~P~~~i 188 (198)
....|+++|+|+|++.+ +++++|||||++++.|+||. +|+|||||++|||||++|+..++++ ++|+.+|
T Consensus 71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v 150 (155)
T cd01920 71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV 150 (155)
T ss_pred cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence 55556789999999864 89999999999999999995 7999999999999999999766543 5899999
Q ss_pred EEeee
Q 029122 189 VISNS 193 (198)
Q Consensus 189 ~I~~c 193 (198)
+|.+.
T Consensus 151 ~i~~~ 155 (155)
T cd01920 151 IIESA 155 (155)
T ss_pred EEEEC
Confidence 99763
No 21
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=4.4e-39 Score=248.39 Aligned_cols=150 Identities=55% Similarity=0.886 Sum_probs=129.3
Q ss_pred EEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc-cc
Q 029122 32 YFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE-SI 110 (198)
Q Consensus 32 ~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~-~~ 110 (198)
|++|.+++ +|+|+||||++.||++|+||++||+.+ +|+++.|||++|+++||+|++......+.. ..
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc----------ccCCceeecccccceeeeeeccCCCCccccccc
Confidence 78888866 999999999999999999999999744 799999999999999999998754331111 22
Q ss_pred cCCcccCccc--CcccCCCeEEEeeecC--CCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122 111 FGESFADENF--KLKHTGPGVLSMANAG--PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS 186 (198)
Q Consensus 111 ~~~~~~~e~~--~~~~~~~G~ls~~~~~--~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~ 186 (198)
.+..+++|.. .+.| ++|+|+|++.+ +++++|||||+|++.++||++|+|||+|++||++|++|++.++++ +|.+
T Consensus 69 ~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~ 146 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQ 146 (155)
T ss_dssp TBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSS
T ss_pred Cccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCC
Confidence 3445777773 3455 89999999975 788999999999999999999999999999999999999887777 9999
Q ss_pred ceEEeeeee
Q 029122 187 KVVISNSGE 195 (198)
Q Consensus 187 ~i~I~~cg~ 195 (198)
+|+|.+||+
T Consensus 147 ~v~I~~cgv 155 (155)
T PF00160_consen 147 DVTISSCGV 155 (155)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEeEC
Confidence 999999996
No 22
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-40 Score=280.19 Aligned_cols=144 Identities=53% Similarity=0.865 Sum_probs=135.8
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|.|.||+++||++|+||...|+.+ ||||..||||+++||||+|||. ++|.||+++||..+++|.
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~rng----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedef 479 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHSRNG----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEF 479 (558)
T ss_pred ecccceEEEecccccchhhhhhhccccCc----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhc
Confidence 89999999999999999999999999543 9999999999999999999997 999999999999999997
Q ss_pred c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 029122 120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG 194 (198)
Q Consensus 120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg 194 (198)
. .++|+++-+|||++.|+++||||||||+-+.|+||++|+|||||+.||||+++|+.+. ++++||.+++.|.+--
T Consensus 480 h~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis 556 (558)
T KOG0882|consen 480 HPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS 556 (558)
T ss_pred CcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence 6 6999999999999999999999999999999999999999999999999999999654 6679999999998753
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-39 Score=233.09 Aligned_cols=144 Identities=47% Similarity=0.753 Sum_probs=133.3
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|..|+|.||||.+.+|++|+||+.+|..+ ||+++.|||-+|+|++|+|++. ..|.++.++||.++++|.
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~~~----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~ 75 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCASD----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY 75 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhhhh----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence 67899999999999999999999999654 8999999999999999999997 889999999999999997
Q ss_pred c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC--CCCCCcccceEEeeee
Q 029122 120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG--RQSGEPKSKVVISNSG 194 (198)
Q Consensus 120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~--~~~~~P~~~i~I~~cg 194 (198)
. -++|+.||++||+++||++++||||||.+.+||||-+|++||+||+|+|.|++|+..+ .+..||..++.|++..
T Consensus 76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~it 153 (161)
T KOG0884|consen 76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDIT 153 (161)
T ss_pred HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeE
Confidence 6 5899999999999999999999999999999999999999999999999999999665 3347899998888754
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.6e-38 Score=241.94 Aligned_cols=141 Identities=60% Similarity=0.937 Sum_probs=125.0
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN 119 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~ 119 (198)
|+.|+|+||||++.||++|+||++||+++ +|+++.|||++|++++|+|++......+ +.++..+++|.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~ 71 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN 71 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHhcC----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence 67899999999999999999999999755 7999999999999999999987543322 34567788887
Q ss_pred cCcc-cCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEee
Q 029122 120 FKLK-HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISN 192 (198)
Q Consensus 120 ~~~~-~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P~~~i~I~~ 192 (198)
.... |+++|+|+|++.++++++|||||++++.++||++|+|||||++|||+|++|+..++ ++++|.++|+|.+
T Consensus 72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 7655 88999999999999999999999999999999999999999999999999997665 5899999999974
No 25
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-38 Score=242.99 Aligned_cols=163 Identities=64% Similarity=1.151 Sum_probs=155.9
Q ss_pred cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEe---ecCceEEecCCcCCC
Q 029122 27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI---IPSFMIQGGDFTLGD 103 (198)
Q Consensus 27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv---~~~~~iq~Gd~~~~~ 103 (198)
.+++||||+.++++++|+++++||.|..|++++||..||++.+|.+ |.++.|||+ ++++++|+||...++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence 5789999999999999999999999999999999999999988765 999999993 447999999999999
Q ss_pred CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122 104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE 183 (198)
Q Consensus 104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~ 183 (198)
+.+++++|++.+++|+..++|..+|.|+|++.+|++++|||||++....+||++|+|||+|.+||+++++|+.....+++
T Consensus 75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk 154 (167)
T KOG0865|consen 75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGK 154 (167)
T ss_pred CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cccceEEeeeeee
Q 029122 184 PKSKVVISNSGEM 196 (198)
Q Consensus 184 P~~~i~I~~cg~l 196 (198)
|.++|.|.+||+|
T Consensus 155 ~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 155 TSKKITIADCGQL 167 (167)
T ss_pred ccccEEEecCCcC
Confidence 9999999999986
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=1.5e-36 Score=239.00 Aligned_cols=128 Identities=32% Similarity=0.537 Sum_probs=107.8
Q ss_pred CEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCC--------------
Q 029122 39 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG-------------- 104 (198)
Q Consensus 39 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~-------------- 104 (198)
.|+.|+|+||||++.||++|+||++||+.+ ||+++.||||+|+|+|||||+.....
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p 72 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERG----------FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP 72 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhC----------CcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence 478999999999999999999999999633 89999999999999999999864311
Q ss_pred ------CCCccccCCcc-----cCcccCcccCCCeEEEeeecC--CCCCCceEEEEcc-------CCcCCCCCceEEEEE
Q 029122 105 ------RGGESIFGESF-----ADENFKLKHTGPGVLSMANAG--PDTNGSQFFITTV-------ITSWLDGRHVVFGKV 164 (198)
Q Consensus 105 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~ls~~~~~--~~~~~sqF~Itl~-------~~~~ld~~~~vfG~V 164 (198)
..+.++++..+ .++...++|+.+|+|+|++.+ +++++|||||+++ +.|+||++|+|||||
T Consensus 73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V 152 (176)
T cd01924 73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152 (176)
T ss_pred ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence 11223444433 244556778899999999987 6999999999998 789999999999999
Q ss_pred EcCHHHHHHHHh
Q 029122 165 LSGMDVVRKIEA 176 (198)
Q Consensus 165 i~G~~vl~~I~~ 176 (198)
++|||||++|+.
T Consensus 153 veG~dvl~~I~~ 164 (176)
T cd01924 153 TDGLDILRELKV 164 (176)
T ss_pred ecCHHHHHhhcC
Confidence 999999999974
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-36 Score=250.71 Aligned_cols=161 Identities=39% Similarity=0.628 Sum_probs=144.7
Q ss_pred cccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCc
Q 029122 21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT 100 (198)
Q Consensus 21 ~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~ 100 (198)
....|+.+-+|.+. |+.|+|.||||+.+||++|+||++||..+ ||+|+.|||++|+|++||||+.
T Consensus 5 ~~~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOGeg----------yy~nt~fhrlvp~f~~Qggdp~ 69 (439)
T KOG0885|consen 5 YNLEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCLEG----------YYDNTEFHRLVPGFLVQGGDPT 69 (439)
T ss_pred cccCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHHhc----------cccCceeeeeccchhcccCCCC
Confidence 34557788888887 89999999999999999999999999644 9999999999999999999996
Q ss_pred CCCCCCCccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE-cCHHHHHHHHhC-
Q 029122 101 LGDGRGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAE- 177 (198)
Q Consensus 101 ~~~~~~~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~- 177 (198)
++|.||.++||.++.+|.+ ++++.++|+|+|++.+.+.||||||+||++.|+|+++|++||+|+ +-+-.+-+|..+
T Consensus 70 -~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~e 148 (439)
T KOG0885|consen 70 -GTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVE 148 (439)
T ss_pred -CCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccc
Confidence 8999999999999999975 688899999999999999999999999999999999999999999 356666677744
Q ss_pred CCCCCCcccceEEeeeeeec
Q 029122 178 GRQSGEPKSKVVISNSGEMA 197 (198)
Q Consensus 178 ~~~~~~P~~~i~I~~cg~l~ 197 (198)
.+.+.||..+-.|.+|.+|.
T Consensus 149 ida~~Rp~~p~kI~s~EV~~ 168 (439)
T KOG0885|consen 149 IDADDRPVDPPKIKSVEVLI 168 (439)
T ss_pred cccccCCCCccceeeeEeec
Confidence 56689999999999999874
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=247.73 Aligned_cols=148 Identities=43% Similarity=0.655 Sum_probs=135.6
Q ss_pred CEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCc----
Q 029122 39 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGES---- 114 (198)
Q Consensus 39 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~---- 114 (198)
+|++|+|+|+||.+.+|.+|.||++|| |..||+.|.||.|.++|.+|.|||+ +.|.||.++|+..
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q 74 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ 74 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence 389999999999999999999999999 4459999999999999999999998 7999999988644
Q ss_pred ---ccCc-ccCcccCCCeEEEeeecCCCCCCceEEEEccC-CcCCCCCceEEEEEEcCHHHHHHHH-hCCCCCCCcccce
Q 029122 115 ---FADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKV 188 (198)
Q Consensus 115 ---~~~e-~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vfG~Vi~G~~vl~~I~-~~~~~~~~P~~~i 188 (198)
|..| .+.++|.+.|+|||++.|.+.+||||||||++ +..||++|+|||+|.+|+|+|.+|+ +..+.+++|.++|
T Consensus 75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI 154 (479)
T KOG0415|consen 75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI 154 (479)
T ss_pred chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence 3444 34789999999999999999999999999987 6789999999999999999999999 7889999999999
Q ss_pred EEeeeeeec
Q 029122 189 VISNSGEMA 197 (198)
Q Consensus 189 ~I~~cg~l~ 197 (198)
+|++.-+|+
T Consensus 155 RI~HTiiLd 163 (479)
T KOG0415|consen 155 RIKHTIILD 163 (479)
T ss_pred eeeeeEEec
Confidence 999998886
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.1e-05 Score=69.24 Aligned_cols=140 Identities=24% Similarity=0.280 Sum_probs=107.1
Q ss_pred EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc----cccC-CcccC-
Q 029122 44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE----SIFG-ESFAD- 117 (198)
Q Consensus 44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~----~~~~-~~~~~- 117 (198)
-|.|+++.+-.|.-++.|.+.|.-. |+++..|.+|.+.+++|.||.......+|. +..+ ..+++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDG----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccc----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 8999999999999999999999433 899999999999999999987644332221 1111 11222
Q ss_pred -cccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhC-CCCCCCcccceEEeeee
Q 029122 118 -ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE-GRQSGEPKSKVVISNSG 194 (198)
Q Consensus 118 -e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~-~~~~~~P~~~i~I~~cg 194 (198)
.+..++| ..-++...+......+.+|++.-...+-+..+..|+|++.+|.++++.|... .+.+..|+.++.|.+..
T Consensus 183 ~l~~~~K~-eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve 260 (558)
T KOG0882|consen 183 NLNFELKH-ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE 260 (558)
T ss_pred cccccccc-cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence 2345566 3556666665556668899999888999999999999999999999999854 45678899998887754
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.17 E-value=0.0021 Score=57.60 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=65.3
Q ss_pred eEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCc
Q 029122 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL 122 (198)
Q Consensus 43 G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~ 122 (198)
=.+.+||.++ ||.++++|+.+.+.+. + .+.+.. +-+| +.....+...+.|+...
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~G~----------~---~Vd~~t-sTfi-----------~d~~L~g~~~p~En~~~ 254 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMEDGT----------F---RVDYRT-STFI-----------SDDSLRGLDKPEENIEK 254 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhCCe----------E---EEeeee-cceE-----------ecccccCccCCccccCc
Confidence 3577786554 5999999999985441 1 111111 1111 11122355566676543
Q ss_pred ccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHH
Q 029122 123 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI 174 (198)
Q Consensus 123 ~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I 174 (198)
+ .+|+|++.+.|.. ....||...+.+. .-.|+|+|||+.|||+++--
T Consensus 255 R--~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a 301 (503)
T TIGR03268 255 R--RRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIA 301 (503)
T ss_pred c--cceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecc
Confidence 3 5899999998754 4568999877553 34699999999999998743
No 31
>PRK00969 hypothetical protein; Provisional
Probab=97.16 E-value=0.0018 Score=58.19 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=65.7
Q ss_pred eEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCc
Q 029122 43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL 122 (198)
Q Consensus 43 G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~ 122 (198)
=.+.+||.++ ||.++++|+.+.+.+. + .+.+.. +-+|. .....+...+.|+...
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~G~----------f---~Vd~~t-stfI~-----------d~~L~g~~~p~En~~~ 257 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLEDGT----------F---EVDFET-STFIA-----------DDRLQGLKIPEENFEP 257 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhCCe----------E---EEeeee-cceEe-----------eccccCccCCccccCc
Confidence 3577787655 5999999999996441 1 111111 11111 1122355667776543
Q ss_pred ccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHH
Q 029122 123 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI 174 (198)
Q Consensus 123 ~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I 174 (198)
+ ++|+|++.+.|.+ ....||...+.+. .-.|+|+|+|+.|||+++--
T Consensus 258 R--~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a 304 (508)
T PRK00969 258 R--RRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFA 304 (508)
T ss_pred c--ccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecc
Confidence 3 5899999998754 4578999877553 34699999999999998743
No 32
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0065 Score=53.04 Aligned_cols=102 Identities=24% Similarity=0.389 Sum_probs=67.0
Q ss_pred EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEe--ecCceEEecCCcCCCCCCCccccCCcccC
Q 029122 40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI--IPSFMIQGGDFTLGDGRGGESIFGESFAD 117 (198)
Q Consensus 40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv--~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~ 117 (198)
.-+=.+.+||.++ +|+++++|+.|...+. .|| ..|-++. ..+......+.
T Consensus 200 rifTy~eve~s~n-sP~saEH~lalmedG~----------------lri~~~tntfis-----------~~~lq~~~~~~ 251 (512)
T COG4070 200 RIFTYFEVELSRN-SPKSAEHFLALMEDGT----------------LRIDVTTNTFIS-----------DDTLQEEKVPE 251 (512)
T ss_pred EEEEEEEEEeCCC-CchhHHHHHHHhhcce----------------EEEEEeccceee-----------ccccccccCCh
Confidence 3445678888665 5999999999984331 122 2222221 11223455677
Q ss_pred cccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHH
Q 029122 118 ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI 174 (198)
Q Consensus 118 e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I 174 (198)
|+..++ .+|.++..+.|.+ ...-||.-.+.+. -..|.|+|||++|||+++--
T Consensus 252 en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a 303 (512)
T COG4070 252 ENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLA 303 (512)
T ss_pred hhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEec
Confidence 776555 4899999987654 4578888766443 24689999999999998743
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.62 E-value=0.025 Score=50.85 Aligned_cols=113 Identities=20% Similarity=0.346 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCcc
Q 029122 44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK 123 (198)
Q Consensus 44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 123 (198)
=|.|+||.+.||.++..|.++. |-. +-.-|+ ..+|-..++.++.-|+.. +...+.+||.+-.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~-~~~VG~------L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~ 437 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLK-TKPVGR------LPVHFAFKEMIMFKGNKE----------LAKGLIPENTPED 437 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCc-ccccce------eEEEEEeCCeeEeccCch----------hccccCCCCCCCC
Confidence 5889999999999999999986 111 001122 234444555444433322 1233444444333
Q ss_pred cCCCeEEEeeecCCCCCCceEEEEc------cCCc-CCCCCceEEEEEEcCHHHHHHHHh
Q 029122 124 HTGPGVLSMANAGPDTNGSQFFITT------VITS-WLDGRHVVFGKVLSGMDVVRKIEA 176 (198)
Q Consensus 124 ~~~~G~ls~~~~~~~~~~sqF~Itl------~~~~-~ld~~~~vfG~Vi~G~~vl~~I~~ 176 (198)
...+|.+++-|......| -.-|-| +|.. .+++ -.++|+|++++|.|+++..
T Consensus 438 ~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 438 KVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhccccc
Confidence 445677776653211100 112222 2332 2344 4577999999999988864
No 34
>PRK00969 hypothetical protein; Provisional
Probab=96.16 E-value=0.065 Score=48.37 Aligned_cols=112 Identities=20% Similarity=0.315 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCcc
Q 029122 44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK 123 (198)
Q Consensus 44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 123 (198)
=|.|+||.+.||+++..|.++. |-. +-.-|+ ..+|-..++.++.-|+.. +...+.+||.+-.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~-~~~VG~------L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~ 440 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLK-TKPVGK------LPVYFKYEDTYLFKGNIE----------YAKGLLPENTPED 440 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCc-ccccce------eEEEEEeCCeEEEccChh----------hccccCCCCCCCC
Confidence 5889999999999999999986 111 001112 244445566555434332 1233444544433
Q ss_pred cCCCeEEEeeecCCCCCCceEEEEc------cCCc-CCCCCceEEEEEEcCHHHHHHHHh
Q 029122 124 HTGPGVLSMANAGPDTNGSQFFITT------VITS-WLDGRHVVFGKVLSGMDVVRKIEA 176 (198)
Q Consensus 124 ~~~~G~ls~~~~~~~~~~sqF~Itl------~~~~-~ld~~~~vfG~Vi~G~~vl~~I~~ 176 (198)
...+|.+++-|......| -.-|-| +|.. .+++ -.++|||+ ++|-|+++..
T Consensus 441 ~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 441 KVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence 445677766653211100 112222 2332 2333 46789999 9999988864
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.072 Score=46.72 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=57.8
Q ss_pred EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecC--ceEEecCCcCCCCCCCccccCCc-----cc
Q 029122 44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGGESIFGES-----FA 116 (198)
Q Consensus 44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~--~~iq~Gd~~~~~~~~~~~~~~~~-----~~ 116 (198)
=|.||||.+.||.++..|.++.. -.. ..-|| .+.|-..++ .+..-|+.....+...+..+.+. +-
T Consensus 377 iieIELyed~APrSv~yFRr~t~-l~~-kpVGk------L~Vhfay~d~~~vmfegn~~~~K~llPEN~P~d~Ve~g~iG 448 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG-LKT-KPVGK------LKVHFAYDDTYLVMFEGNAVLAKGLLPENTPADTVEAGEIG 448 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc-ccc-ccccc------eEEEEEeCCceEEEEcCChHHhccCCCCCCchhheeccccc
Confidence 48999999999999999998762 110 01122 344555555 22223443322211111111111 11
Q ss_pred CcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhC
Q 029122 117 DENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE 177 (198)
Q Consensus 117 ~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~ 177 (198)
-.|...+| .|+++..-.+.+. | ++..+-=....++|+|++|.+-|..|...
T Consensus 449 vTN~a~r~--~GmIGVRL~dsde----f----GPTGE~Fe~TNiIGrIveg~e~l~~ikeG 499 (512)
T COG4070 449 VTNQAARH--MGMIGVRLEDSDE----F----GPTGEKFEGTNIIGRIVEGPERLIGIKEG 499 (512)
T ss_pred ccccchhc--cceeEEEeccccc----c----CCCCCccccceeehhhccChHHhcccccC
Confidence 11222233 3555544322221 1 22222112356889999999999888753
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=95.34 E-value=0.13 Score=39.23 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=56.7
Q ss_pred EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecC--ceEEecCCcCCCCCCCccccCCcccCcccC
Q 029122 44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGGESIFGESFADENFK 121 (198)
Q Consensus 44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 121 (198)
.++.+|..|.||++|+.|.+.- =|.+..+|-..-+ .++.-++.. ....+.||..
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~T 64 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENHT 64 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SEE
T ss_pred EEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcCc
Confidence 5889999999999999999987 1777777777655 355555532 1123344433
Q ss_pred cccCCCeEEEee--e-cCCC--CC-CceEEEEccCCcCC-CC-----CceEEEEEEcCHHHHHHHH
Q 029122 122 LKHTGPGVLSMA--N-AGPD--TN-GSQFFITTVITSWL-DG-----RHVVFGKVLSGMDVVRKIE 175 (198)
Q Consensus 122 ~~~~~~G~ls~~--~-~~~~--~~-~sqF~Itl~~~~~l-d~-----~~~vfG~Vi~G~~vl~~I~ 175 (198)
. +-.+|-|.+. . +... .. -++.-|..+..+-+ .. .-.+|++|++|+|-|.++.
T Consensus 65 ~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~ 129 (147)
T PF12903_consen 65 V-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEAC 129 (147)
T ss_dssp S-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHH
T ss_pred c-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHH
Confidence 2 2246766665 1 1111 11 24555555433221 11 1368999999999887775
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=63.36 E-value=7.8 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCCeEEEeeecCCCCCCceEEEEccCCc-------CCCCCceEEEEEEcCHHHHHHHH
Q 029122 125 TGPGVLSMANAGPDTNGSQFFITTVITS-------WLDGRHVVFGKVLSGMDVVRKIE 175 (198)
Q Consensus 125 ~~~G~ls~~~~~~~~~~sqF~Itl~~~~-------~ld~~~~vfG~Vi~G~~vl~~I~ 175 (198)
...|.|+....+.+ |.|..++.| .+-....++|||.+|.+.++++.
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~ 112 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK 112 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence 35788888755444 888888775 34456899999999999988876
No 38
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.83 E-value=5.5 Score=28.15 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=8.1
Q ss_pred CchhHHHHHHHH
Q 029122 1 MATKTRLVSVAL 12 (198)
Q Consensus 1 ~~~~~~~~~~~~ 12 (198)
||+|+++++.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 899986555443
No 39
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=54.30 E-value=8.3 Score=33.82 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEc-CHHHHHHHH
Q 029122 126 GPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLS-GMDVVRKIE 175 (198)
Q Consensus 126 ~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~-G~~vl~~I~ 175 (198)
.+|.|.+.+........|.-|++.+.|. |++..|+|+|.+ -+.+|+-|.
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 5899999998766677899999999886 888999999995 678888776
No 40
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=25.97 E-value=68 Score=20.00 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=18.8
Q ss_pred EcCHHHHHHHHhCCCCCCCcccceEEee
Q 029122 165 LSGMDVVRKIEAEGRQSGEPKSKVVISN 192 (198)
Q Consensus 165 i~G~~vl~~I~~~~~~~~~P~~~i~I~~ 192 (198)
.+|.|||+++... .....+.-||..++
T Consensus 4 ~sGv~vlRel~r~-~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR-GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh-cCCCCCcCCEEEeC
Confidence 4799999999976 44445555666554
No 41
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=12 Score=27.03 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=23.6
Q ss_pred EEEEccCCcCCCCC------ceEEEEEEcCHHHHHHHH
Q 029122 144 FFITTVITSWLDGR------HVVFGKVLSGMDVVRKIE 175 (198)
Q Consensus 144 F~Itl~~~~~ld~~------~~vfG~Vi~G~~vl~~I~ 175 (198)
..+.++..|-.|.+ -.++||+++++|.|.++.
T Consensus 79 lClFFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~ 116 (126)
T COG2164 79 LCLFFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVD 116 (126)
T ss_pred EEEEecCCcCcccccCccchHHHHHHHHhhHHhhhccc
Confidence 55555666666654 358999999999998775
No 42
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=24.19 E-value=97 Score=20.15 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=18.2
Q ss_pred CCCCceEEEEEEcCHHHHHHHH-hCCCCCC
Q 029122 154 LDGRHVVFGKVLSGMDVVRKIE-AEGRQSG 182 (198)
Q Consensus 154 ld~~~~vfG~Vi~G~~vl~~I~-~~~~~~~ 182 (198)
+|..-.++|||++| -+++|. ...++++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G 43 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDG 43 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCC
Confidence 45667899999999 455565 3444444
No 43
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=22.60 E-value=1.5e+02 Score=22.96 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=29.1
Q ss_pred EEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeec
Q 029122 45 IVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90 (198)
Q Consensus 45 ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~ 90 (198)
+.|-||.-+-|..+.|.+++| .-.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~c-------------a~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTC-------------AATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHH-------------HhcCCeEEEEcc
Confidence 678899999999999999999 367889999987
Done!