BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029123
         (198 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
          Length = 553

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 15/113 (13%)

Query: 85  GSLNNLSSLNKQYG----LSKGSN-EAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVL 139
           G + N  +L  +YG       GS+ E +  +      +++GP    + L DL G F F L
Sbjct: 75  GEIYNHQALRAEYGDRYQFQTGSDCEVILAL-----YQEKGP----EFLDDLQGMFAFAL 125

Query: 140 YDCKAGTIFAALDADEGVRLFWGIAADGSVVISDNLELIKASCAKSFAPFPAG 192
           YD +        D    + L+ G    G + ++  ++ +   C ++   FPAG
Sbjct: 126 YDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAG 177


>pdb|3R3C|A Chain A, Crystal Structure Of Arthrobacter Sp. Strain Su
           4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
           With 4-Hydroxyphenacyl Coa
 pdb|3R3C|B Chain B, Crystal Structure Of Arthrobacter Sp. Strain Su
           4-Hydroxybenzoyl Coa Thioesterase Mutant H64a Complexed
           With 4-Hydroxyphenacyl Coa
          Length = 151

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 131 LDGSFGFVLYDCKAGTIFAALDADEGVRLFWGIAADGS 168
           LDG+ GFV+ +       A+++  + +R  WG+ A G+
Sbjct: 30  LDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVAGGA 67


>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
           Mg-Adp From Pyrococcus Horikoshii Ot3
          Length = 243

 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDA 153
           P    +V++ L G + F+L DC AG    A  A
Sbjct: 98  PRKLPEVIKSLKGKYDFILIDCPAGLQLRAXSA 130


>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
           Division Atpase Mind
 pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
           Division Atpase Mind
          Length = 237

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALDA 153
           P    +V++ L   F F+L DC AG    A+ A
Sbjct: 98  PRKLPEVIKSLKDKFDFILIDCPAGLQLDAMSA 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,859,998
Number of Sequences: 62578
Number of extensions: 224631
Number of successful extensions: 411
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 4
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)